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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | I 1 (D) | polymer(polypeptide(L)) [423 aa] | ATP-dependent RNA helicase HAS1 :HAS1_YEAST | |
2 | b | IA 1 (i) | polymer(polypeptide(L)) [84 aa] | 60S ribosomal protein L36-A :RL36A_YEAST | 337E(M) 357G(K) 358K(G) (identity: 0.0 %/37.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8v83_I_1 identity=37.4% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* * * * * * ** ** * * *** ** ****** ** ** * : 8v83_I_1 44:FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLH--------------------------------------: 105 SecStr :TTTS HHHHHHHHHHT B HHHHHHHHHHHHT EEEE TTSSHHHHHHHHHHHHHH--------------------------------------: ExpBur :beebebbeebeebbeebeeeebeebbeebbebbeeeebbbbbbebeeebbbbbbbbbbbebe--------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 8v83_I_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT---KFLP-NAPKALIVEPSRELA: 299 : ** * * * ****: 8v83_I_1 106:-----------------------------------------------------------------------------SL-KFKPRNGTGIIVITPTRELA: 127 SecStr :-----------------------------------------------------------------------------HH-T GGG EEEE SSHHHH: ExpBur :-----------------------------------------------------------------------------ee-ebeeeebbbbbbbbbbbbbb: queryA 300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG: 398 : * *** * * ** **** ** * * * **** * * * * : 8v83_I_1 128:LQIFGVARELMEFHSQ---TFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILP------: 218 SecStr :HHHHHHHHHHGGGSSS--- EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHH TT TT EEEEESHHHHHHHT HHHHHHHHHHS ------: ExpBur :ebbbbbbebbbeebeb---eebbbbbeeeeeebbeebeebbbbbbbbbebbbebbeebeebeeeebebbbbbbbbbbbeeeebeebeebbeebe------: Contact : b bb queryA 399:KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV: 498 : : 8v83_I_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 499:RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC------------------------------------------------------: 544 : : 8v83_I_1 219:----------------------------------------------NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVXXXXXXXXXXXXXQGYVVCD: 272 SecStr :---------------------------------------------- SS EEEEEESS HHHHHHHHHHS SS EEEE ------------- EEEE : ExpBur :----------------------------------------------eeebbbbbbbeeeeeebeebbeebbeeeeeebee-------------ebbbebe: queryA 545:-----------------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ: 597 : *** * * * ********** ** * * ** : 8v83_I_1 273:SDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLE-LHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPR: 371 SecStr :HHHHHHHHHHHHHHTTTSEEEEEES HHHHHHHHHHHHHTT EE-E TTS HHHHHHHHHHHHH SSEEEEEEHHHHTT SEEEE S S HH: ExpBur :beebbbbbbbbbeeeeeebbbbbbbbbbbbebbbebbeeeebebeb-bbbebebeebeebbeebeeeeeebbbbbbbbbbeeeeeebebebbbbbbbbbe: queryA 598:NYV: 600 : * : 8v83_I_1 372:DYI: 374 SecStr :HH : ExpBur :eee: |