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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | G 1 (J) | polymer(polypeptide(L)) [453 aa] | ATP-dependent RNA helicase DbpA :DBPA_ECOLI | |
2 | b | J 1 (K) | polymer(polyribonucleotide) | RNA (5'-D(*(POP))-R(P*GP*GP*AP*CP*AP*UP*AP*UP*GP*GP*CP*UP*GP*UP*UP*CP*GP*CP*CP*AP*UP*U)-3') | 294P 295S(T) 296R 324I(C) 325G 346T 347P 348G 349R 379G 380Y(F) 514R(N) 515T 516K 546H 547G 554R 572T 573D 574V 594D(W) (identity: 76.2 %/36.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7pli_G_1 identity=36.4% |
queryA 3:AFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA: 101 :*** * * * * * ** * ** * ** * ****** ** * * * : 7pli_G_1 5:AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ-----------------------------: 75 SecStr : GGGGS S HHHHHHHHHHT S HHHHHHHHHHHTT EEEEE TTS HHHHHHHHHHHT SSS S -----------------------------: ExpBur :ebeebeebeeebeebbeeeebeebeebbeebbebbeeeebbbbbbebbbebbbbbbbbbbeebebeeeebb-----------------------------: queryA 102:FAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG: 201 : : 7pli_G_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 202:HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ: 301 : ** * **** *: 7pli_G_1 75:--------------------------------------------------------------------------------------QALVLCPTRELADQ: 88 SecStr :-------------------------------------------------------------------------------------- EEEE SSHHHHHH: ExpBur :--------------------------------------------------------------------------------------bbbbbbbbebbbee: Contact : bbb queryA 302:TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL: 401 : * * * ** * * * * ***** * * * ** **** * * ** * * : 7pli_G_1 89:VAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------ASR: 180 SecStr :HHHHHHHHGGGSTT E--EEE TTS HHHHHHHTTS SEEEE HHHHHHHHHHTS TT EEEETTHHHHTSHHHHHHHHHHHHHS ------SSS: ExpBur :bbebbeebbebeeebeb--bbbbbeeeeeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeeebeebeebbeebe------eeb: Contact : bb bbbb bb queryA 402:QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501 :* *** * * * * * * * * * * : 7pli_G_1 181:QTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----RLL: 238 SecStr :EEEEEES HH-HHHHGGGG SSEEEEESS TT -----------SEEEEEEE STTHH-------------------------HHHH-----HHH: ExpBur :bbbbbbbbbbee-beeebeebbeeeeebeebeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----ebb: queryA 502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601 : * ** ** ** * * **** * * * ** * * * ******* ** * * * **: 7pli_G_1 239:SLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVH: 329 SecStr :HHH SSEEEE SSHHHHHHHHHHHHHTTB--------- EEEE TTS HHHHHHHHHHHHTTS SEEEE GGGSSS TT EEEESS SSHHHHHH: ExpBur :beeebebbbbbbbeeeebeebbebbeeeeb---------bbbbbbeeeebeebbbbbbebebebbbbbbbbebbbbbbebeebebbbbbbbbeebebbbb: Contact : bbb bb b bbb b queryA 602:RIGRVGRAERMGLAISLVATEKEK: 625 :**** ** ***** * * : 7pli_G_1 330:RIGRTARAGNSGLAISFCAPEEAQ: 353 SecStr :HHTTSS TT EEEEEEE GGGHH: ExpBur :bbbbbbbeeeebbbbbbbbeebee: |