[pdbjlvh2]Protein Model on 8h6j_FA

Protein Model on 8h6j_FA_1 (TEMPLATE: 8h6j )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	FA 1 (4U)	polymer(polypeptide(L)) [578 aa]	Probable ATP-dependent RNA helicase DDX23 :DDX23_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8h6j_FA_1 identity=33.2%

queryA         1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                :          * *           ** **   **  *   *    ******** ** **                                         :
8h6j_FA_1    390:IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL---------------------------------------: 450
SecStr          : S TTTS   HHHHHHHHHHT  S  HHHHHHHHHHTTT  EEE   TTSSHHHHHHHHHH---------------------------------------:    
ExpBur          :beeeeeeeeeeeeeeeeeeeeeeeeeebbbbebebeebbbbbeeeeeeeeebeebeeebee---------------------------------------:    

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
8h6j_FA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------------: 286
                :                                                                                                    :
8h6j_FA_1    451:--------------------------------------------------------------------------------------VWITTLPKIDRIEE: 464
SecStr          :--------------------------------------------------------------------------------------HHHHHS HHHH  S:    
ExpBur          :--------------------------------------------------------------------------------------eeeeeeeeeeeeee:    

queryA       287:----PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD: 382
                :    * * *  * **** *       * *       *    ***    **   *  *  **  ***** *      * **     ******     *   :
8h6j_FA_1    465:SDQGPYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGXEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP: 561
SecStr          :S    SEEEE SSHHHHHHHHHHHHHHHGGGT---  EEEE SSS HHHHHHHHHT - EEEE HHHHHHHHHTTSS  TT  EEEESSHHHHHHTT HH:    
ExpBur          :eeeebeeeeebeebeebeeebeeeeeebeeee---eeeeeebeeeeeeeeeeeeeee-eeebbbeebbbebeeeeeeeeeeeebebeeeeeebeeeebee:    

queryA       383:FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN: 480
                :         *                 *  *     *     *   *          *  *               ***  *  *   *         * :
8h6j_FA_1    562:DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFXXT---------MPPAV---------------ERLARSYLRRPAVVYXXX----AG: 633
SecStr          :HHHHHHTTS GGGS  SSGGGG HHHHHHHHHH TTS  EEEE -- ---------  HHH---------------HHHHHHH SS EEE -------  :    
ExpBur          :beeeeeeeeeeeeeeeeeeebeeeeebeeebeeeeebbbbbebe--e---------eeeeb---------------eeeeeeebbeeeebb-------ee:    

queryA       481:SPEMWSEAIKILKGEYAVR----AIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA: 575
                : *    *    *  *   *    ** *   *   ***   *  ** *       *              *        *   *   * *    *  *** :
8h6j_FA_1    634:KPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMG---------YNACTLXXXXXXXXREFALSNLKAGAKDILVATDVX: 724
SecStr          : HHHHSEEEEEE  GGGHHHHHHHHHHT   S EEEE SSHHHHHHHHHHHHHTT---------  EEE -------- HHHHHHHHHTS  EEEE   -:    
ExpBur          :eebeebbeeeeeeeeeebeeeeeeeeeeeeeeebeebbeeeeebeeebeebeeee---------beebee--------eeeeeebbeeeebeeebebee-:    

queryA       576:ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630
                :   ***  *  * *         * ***** ***   * **     *   * *  :
8h6j_FA_1    725:XXXIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL: 779
SecStr          :---      SEEEESS  SSHHHHHHHHGGG SSSS  EEEEEE GGGGGGHHHH:    
ExpBur          :---eeeeebebbebeebeeeeeebeebbeebeeeeeeeebeebeeeebeebbbee:

Protein Model on 8h6j_FA_1 (TEMPLATE: 8h6j )

Input Residue Numbers for Focused Sites