[pdbjlvh2]Protein Model on 8q7w_F

Protein Model on 8q7w_F_1 (TEMPLATE: 8q7w )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	F 1 (E)	polymer(polypeptide(L)) [529 aa]	Probable ATP-dependent RNA helicase DDX23 :DDX23_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8q7w_F_1 identity=33.7%

queryA         1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                :          * *           ** **   **  *   *    ******** ** **                                         :
8q7w_F_1     390:IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL---------------------------------------: 450
SecStr          :   SSS  S HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHH---------------------------------------:    
ExpBur          :eeeeeeeeeeeeeeeeeeeeeeeeeeebbbbeeebeebebbbeeeeeeeeeeeebeeebee---------------------------------------:    

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
8q7w_F_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------------: 286
                :                                                                                                    :
8q7w_F_1     451:--------------------------------------------------------------------------------------VWITTLPKIDRIEE: 464
SecStr          :--------------------------------------------------------------------------------------HHHHTS HHHH  S:    
ExpBur          :--------------------------------------------------------------------------------------eeeeeeeeeeeeee:    

queryA       287:----PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD: 382
                :    * * *  * **** *       * *       *    ***    **   *  *  **  ***** *      * **     ******     *   :
8q7w_F_1     465:SDQGPYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGXEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP: 561
SecStr          :S    SEEEE SSHHHHHHHHHHHHHHHTTTT---  EEEE SSS HHHHHHHHHT - EEEE HHHHHHHHTTTSS  SS  EEEEE HHHHHHHT HH:    
ExpBur          :eeeebeeeeebeeeeebeeebeeeeeebeeee---eeeeeebeeeeeeebeebeeee-eeebbbeebbbebeeeeeeeeeeeebeeeeeebbbeeeebee:    

queryA       383:FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGA-: 479
                :         *                 *  *     *     *   *          *  *               ***  *  *          **   :
8q7w_F_1     562:DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTAT---------MPPAV---------------ERLARSYLR----------RPAVV: 627
SecStr          :HHHHHHHTS GGG   SSGGGS HHHHHHHHTTGGG   EEEEEESS---------  HHH---------------HHHHHHH S----------S EEE:    
ExpBur          :eeeeeeeeeeeeeeeeeeeeebeeeebeeeeeeeeebebbeeebbee---------eeeeb---------------eeeeeeebb----------eeeee:    

queryA       480:-----NSPEMWSEAIKILKGEYAVR----AIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL: 569
                :       *    *    *  *   *    ** *   *   ***   *  ** *       *              *        *   *   * *    *:
8q7w_F_1     628:YIGXXXXPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMG---------YNACTLXXXXXXXXREFALSNLKAGAKDIL: 718
SecStr          :EE ---- TTTSEEEEEE  GGGHHHHHHHHHHT   S EEEE SSHHHHHHHHHHHHHTT---------  EEE -------- HHHHHHHHHTS  EE:    
ExpBur          :bee----eeeebbeeeeeeeeeebeeeeeeeeeeeeeeebeebbeeeeebeeebeebeeee---------beebee--------eeeeeebbeeeebeee:    

queryA       570:ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630
                :  ***    ***  *  * *         * ***** ***   * **     *   * *  :
8q7w_F_1     719:VATDVXXXXIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL: 779
SecStr          :EE   ----      SEEEESS  SSHHHHHHHHGGG SSSS  EEEEEE GGGGGGHHHH:    
ExpBur          :bebee----eeeeebebbebeebeeeeeebeebbebbeeeeeeeebeebeeeebeebbbee:

Protein Model on 8q7w_F_1 (TEMPLATE: 8q7w )

Input Residue Numbers for Focused Sites