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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(DDX1_HUMAN) | F 1 (F) | polymer(polypeptide(L)) [361 aa] | ATP-dependent RNA helicase SUB2 :SUB2_YEAST |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7apx_F_1 identity=34.6% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* ** * * * ** * *** * * *** * * : 7apx_F_1 18:FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-----------------------------------------: 76 SecStr :GGGG HHHHHHHHTTT S HHHHHHHHHHTTT EEE TTSSHHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebbbbbeebeeeeeeeebeebbeebbeeebbebebeeeeebeebbbbbbbb-----------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 7apx_F_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELA: 299 : * ****: 7apx_F_1 77:-------------------------------------------------------------------------------QLDPVPGEVAVVVICNARELA: 97 SecStr :-------------------------------------------------------------------------------H TT EEEE S HHHH: ExpBur :-------------------------------------------------------------------------------ebeeeeebbbbbbbbebeeeb: queryA 300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS: 396 : * * * ** * ** * * *** ***** ** ** * * ** * * * * * : 7apx_F_1 98:YQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATP: 192 SecStr :HHHHHHHHHH TT -- S EEEE TTS HHHHHHHHH TTT SEEEE HHHHHHHHHTTSS TT EEEEETHHHHHHSHH---HHHHHHHHHHTS : ExpBur :eebbebbeebbeee--eebeebbbeeeeeeeebbeebeeeeebbbbbbbbbebbeebbeeeebebeebebbbbbebbebeeeee---beebbeebbeebe: queryA 397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496 : * ** **** : 7apx_F_1 193:RDK--QVMMFSATL--------------------------------------------------------------------------------------: 204 SecStr :SS --EEEEE S --------------------------------------------------------------------------------------: ExpBur :eeb--ebbebbeee--------------------------------------------------------------------------------------: queryA 497:AVRAIKEH------------------------------------------------------KMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC: 542 : * *** * * : 7apx_F_1 205:--------SQEIXXXXXXXXQNPXXXXXXXXXXXXXXGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPA: 287 SecStr :-------- TT -------- -------------- EEEEEEE GGGHHHHHHHHHHHS SEEEEE S HHHHHHHHHHH---------HHTT E: ExpBur :--------eeee--------eee--------------eeebbbbeeeeeebeeebeebbeebeeebbbbbbeeeeebeebbeeb---------eeeeeeb: queryA 543:VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625 : ** * ** ** * *** ***** ** * * * ** ** ** ***** * : 7apx_F_1 288:ITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDE: 370 SecStr :EEE SSS HHHHHHHHHHHHTTS SEEEE GGGSSS SSEEEEEESS SSHHHHHHHHTTSSTTS EEEEEEE SHHHH: ExpBur :bbbbeeeeeebeeeeeeebeeeeeebbbbbeebbeeeebeebbbbbbbbbbeebebbeebbebbebeeeebbbbbbbeeeebe: |