[pdbjlvh2]Protein Model on 8arp_F_1_D

Protein Model on 8arp_F_1_D_1 (TEMPLATE: 8arp )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	F 1 (F)	polymer(polypeptide(L)) [443 aa]	ATP-dependent RNA helicase DBP2 :DBP2_YEAST
2	b		D 1 (D)	polymer(polypeptide(L)) [444 aa]	ATP-dependent RNA helicase DBP2 :DBP2_YEAST	517I(R) 525Y (identity: 50.0 %/38.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8arp_F_1 identity=38.5%

queryA         1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                :   * * *        *       ** **    *  * * *    * ******     * *                                       :
8arp_F_1     112:ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI---------------------------------------: 172
SecStr          : SSGGGS   HHHHHHHHHTT  S  HHHHHHHHHHTBT  EEEE  TTSSTTHHHHHHHH---------------------------------------:    
ExpBur          :beebebbebeeebbebbeeeeeeebebbbbbbbbbbbbbebbbbbbebeebbbbbbbbbbb---------------------------------------:    

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
8arp_F_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------------NAPK: 288
                :                                                                                                  * :
8arp_F_1     173:------------------------------------------------------------------------------------VHINAQPLLAPGDGPI: 188
SecStr          :------------------------------------------------------------------------------------HHHHTS   TTT   S:    
ExpBur          :------------------------------------------------------------------------------------bbbeebeebeeeebbb:    

queryA       289:ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH: 388
                : *   * **** *       *         *     ***    *   *  *  **  ***** *    ** **  *  *******  *  *    *    :
8arp_F_1     189:VLVLAPTRELAVQIQTECSKFGH---SSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIV: 285
SecStr          :EEEE SSHHHHHHHHHHHTTTST---TTT  EEEE SSS GGGTHHHHTT  SEEEE HHHHHHHHTTTS   SS  EEEES HHHHHTTT HHHHHHHH:    
ExpBur          :bbbbbbbebbbbebeebbeebbe---ebebebbbbebeeeeeebeeebeebbbbbbbbbebbbebbeeeebbbebbbbbbbbbbbebbeeebeeebeebb:    

queryA       389:NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVN--PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW: 485
                : **          *    ***     ** *       *  *     * *        *  *    * ***   *             **           :
8arp_F_1     286:DQI------RPDRQTLMWSATWPK-EVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL--------ETASQDN-----------: 359
SecStr          :TTS------ TTSEEEEEES   H-HHHHHHHHH SS EEEE   S     TT EE  EE  TTTTTTHHHHHH--------HHHHTST-----------:    
ExpBur          :beb------beebbbbbbbbeeee-ebeebbeebbeeebebebeeeeeebeeebebebbebeeeebeebbeebb--------eebeeee-----------:    
Contact         :                                                               b                                    

queryA       486:SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP: 585
                :         **              **  **  **    *    *               ***    **   *  *  *       *********  *  :
8arp_F_1     360:---------EY-----------KTLIFASTKRMCDDITKYLREDG---------WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGIN: 430
SecStr          :---------T ----------- EEEE SSSTTHHHHHHHHHHHT---------  EEEE TTS HHHHHHHHHHHHTTS SEEEE TTTSSS       :    
ExpBur          :---------eb-----------bbbbbbbebeebeebbeebeeee---------bebbbbbbebeeeebeebbebbeeeebebbbbbbebbeebebeebe:    
Contact         :                               b       b                                                            

queryA       586:YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :****   *     ******* ***   * ***   **  *:
8arp_F_1     431:YVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF-TEQNK: 469
SecStr          : EEESS  SSHHHHHHHHTTS SSS   EEEEEE- GGGG:    
ExpBur          :bbbbbebbebebbbbebbeebbeeeeebbbbbbb-beeee:

Protein Model on 8arp_F_1_D_1 (TEMPLATE: 8arp )

Input Residue Numbers for Focused Sites