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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(DDX1_HUMAN) | E 1 (D) | polymer(polypeptide(L)) [580 aa] | Probable ATP-dependent RNA helicase DDX23 :DDX23_HUMAN |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8rc0_E_1 identity=34.0% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * ** ** ** * * ******** ** ** : 8rc0_E_1 390:IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL---------------------------------------: 450 SecStr : TTTS HHHHHHHHHHT SS HHHHHHHHHHTTT EEEE TTSSHHHHHHHHHH---------------------------------------: ExpBur :bbeeeeeeeeeeeeeeeeeeeeeeeebebbbebeeeebebbebeeeeeeeeeeeeeeeeee---------------------------------------: queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 8rc0_E_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------------: 286 : : 8rc0_E_1 451:--------------------------------------------------------------------------------------VWITTLPKIDRIEE: 464 SecStr :--------------------------------------------------------------------------------------HHHHTS HHHH S: ExpBur :--------------------------------------------------------------------------------------eeeeeeeeeeeeee: queryA 287:----PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD: 382 : * * * * **** * * * * *** ** * * ** ***** * * ** ****** * : 8rc0_E_1 465:SDQGPYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGXEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP: 561 SecStr :S SEEEE SSHHHHHHHHHHHHHHHTTTT--- EEEE TTS HHHHHHHHHH - EEEE HHHHHHHHHTTS TT EEEEESHHHHHHTT HH: ExpBur :eeeebbeebebeeeeeeeeeeeeeeeeeeeee---ebeeeeeeeeeeeeeeeeeeee-eeebbbeebeeeeeeeeeeeeeeeebeeeebeeebeeeebee: queryA 383:FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG--: 478 : * * * * * * * * *** * * ** : 8rc0_E_1 562:DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTAT---------MPPAV---------------ERLARSYLR----------RPAVV: 627 SecStr :HHHHHHHTS GGGS SSGGGG HHHHHHHHHTGGGS EEEEEES --------- HHH---------------HHHHHHH S----------S EEE: ExpBur :eeeeeeeeeeeeeeeeeeeeeebeeebeeebeeeeebebbeebbbee---------eeeee---------------eeeeeeebb----------eeeee: queryA 479:----ANSPEMWSEAIKILKGEYAVR----AIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL: 569 : * * * * * * ** * * *** * ** * * * * * * * *: 8rc0_E_1 628:YIGXAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMG---------YNACTLXXXXXXXXREFALSNLKAGAKDIL: 718 SecStr :EE - HHHHSEEEEEE GGGHHHHHHHHHHT SSEEEE SSHHHHHHHHHHHHHTT--------- EEE -------- HHHHHHHHHTS EE: ExpBur :bee-eeeeeeebbeeeeeeeeeeeeeeeeeeeeeeeeeebeebbebeeebeeeeeeeeeee---------beeeee--------eeeeeeebeeeebeeb: queryA 570:ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630 : *** *** * * * * ***** *** * ** * * * : 8rc0_E_1 719:VATDVXXXXIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL: 779 SecStr :EE ---- SEEEESS SSHHHHHHHHGGG SSSS EEEEEE GGGGGGHHHH: ExpBur :bbeee----eeeeebebeebeeeeeeeeebeeeeebbeeeeeeeeeeebeeeeeeeebbee: |