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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(DDX1_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [455 aa] | ATP-dependent RNA helicase DbpA :W8TF60_ECOLX |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7pmq_D_1 identity=36.4% |
queryA 3:AFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA: 101 :*** * * * * * ** * ** * ** * ****** ** * * * : 7pmq_D_1 5:AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ-----------------------------: 75 SecStr : TT TT S HHHHHHHHHHT S HHHHHHHHHHTTT EEEE TTSSHHHHHHHHHHHT SS S -----------------------------: ExpBur :ebeeeeebeeebeebbeeeeeeebeebbeebbebbbeeebbebbbebbbebbbbbbbbbbeebeeeeeebb-----------------------------: queryA 102:FAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG: 201 : : 7pmq_D_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 202:HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ: 301 : ** * **** *: 7pmq_D_1 75:--------------------------------------------------------------------------------------QALVLCPTRELADQ: 88 SecStr :-------------------------------------------------------------------------------------- EEEE SSHHHHHH: ExpBur :--------------------------------------------------------------------------------------bbbbbbbbebbbee: queryA 302:TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL: 401 : * * * ** * * * * ***** * * * ** **** * * ** * * : 7pmq_D_1 89:VAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------ASR: 180 SecStr :HHHHHHHHTTSSSS E--EEE TTS HHHHHHHHSS SEEEE HHHHHHHHHHT GGG EEEEESHHHHTSSSSHHHHHHHHHTS ------SSS: ExpBur :bbebbeebbebbeebeb--bbbbbeeebeebeeebeebbbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebeeebeebbeebe------eeb: queryA 402:QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501 :* *** * * * * * * * * * * : 7pmq_D_1 181:QTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----RLL: 238 SecStr :EEEEEES HH-HHHHGGGGSSS EEEE S TT -----------SEEEEEEE STTHH-------------------------HHHH-----HHH: ExpBur :bbbbbbbbbeee-bbeebeebbeeeeebeeeeeeeeb-----------ebebebbebeeeebe-------------------------ebbb-----bbb: queryA 502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601 : * ** ** ** * * **** * * * ** * * * ******* ** * * * **: 7pmq_D_1 239:SLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVH: 329 SecStr :HHH SSEEEE SSHHHHHHHHHHHHHTT --------- EEEE TTS HHHHHHHHHHHHHTS SEEEE GGGSSS TT EEEESS SSHHHHHH: ExpBur :beeebebbbbbbbeeeebeebbebbeeeeb---------ebbbbbeeeebeebbbbbbbbebebbbbbbbbebbbbbbebeebebbbbbbbbeebbbbbb: queryA 602:RIGRVGRAERMGLAISLVATEKEK: 625 :**** ** ***** * * : 7pmq_D_1 330:RIGRTARAGNSGLAISFCAPEEAQ: 353 SecStr :HHTTSS TT EEEEEEE GGGHH: ExpBur :bbbbbbbeeeebbbbbbbbeebee: |