[pdbjlvh2]Protein Model on 7pmq_D_1_S

Protein Model on 7pmq_D_1_S_1 (TEMPLATE: 7pmq )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	D 1 (D)	polymer(polypeptide(L)) [455 aa]	ATP-dependent RNA helicase DbpA :W8TF60_ECOLX
2	b		S 1 (D)	non-polymer(BEF)	BERYLLIUM TRIFLUORIDE ION	52K 371E 578G 605R 608R (identity: 100.0 %/36.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7pmq_D_1 identity=36.4%

queryA         3:AFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA: 101
                :***   * *        *   *  *  **   * ** * **   * ****** **     *     *   *                             :
7pmq_D_1       5:AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ-----------------------------:  75
SecStr          : TT TT S HHHHHHHHHHT  S  HHHHHHHHHHTTT  EEEE  TTSSHHHHHHHHHHHT  SS  S  -----------------------------:    
ExpBur          :ebeeeeebeeebeebbeeeeeeebeebbeebbebbbeeebbebbbebbbebbbbbbbbbbeebeeeeeebb-----------------------------:    
Contact         :                                                  b                                                 

queryA       102:FAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG: 201
                :                                                                                                    :
7pmq_D_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       202:HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ: 301
                :                                                                                       **   * **** *:
7pmq_D_1      75:--------------------------------------------------------------------------------------QALVLCPTRELADQ:  88
SecStr          :-------------------------------------------------------------------------------------- EEEE SSHHHHHH:    
ExpBur          :--------------------------------------------------------------------------------------bbbbbbbbebbbee:    

queryA       302:TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL: 401
                :             * *   *   **     *   *     * * ***** *    *   *     ** ****  *  * ** *       *         :
7pmq_D_1      89:VAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------ASR: 180
SecStr          :HHHHHHHHTTSSSS  E--EEE TTS HHHHHHHHSS  SEEEE HHHHHHHHHHT   GGG  EEEEESHHHHTSSSSHHHHHHHHHTS ------SSS:    
ExpBur          :bbebbeebbebbeebeb--bbbbbeeebeebeeebeebbbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebeeebeebbeebe------eeb:    
Contact         :                                                                     b                              

queryA       402:QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501
                :*    ***         *      *        *  *           *      *   *  *                           *      *  :
7pmq_D_1     181:QTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----RLL: 238
SecStr          :EEEEEES   HH-HHHHGGGGSSS EEEE S TT   -----------SEEEEEEE  STTHH-------------------------HHHH-----HHH:    
ExpBur          :bbbbbbbbbeee-bbeebeebbeeeeebeeeeeeeeb-----------ebebebbebeeeebe-------------------------ebbb-----bbb:    

queryA       502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601
                :  *       ** ** **          *          *   ****     * * * **  *  * *  ******* **     * *  *       **:
7pmq_D_1     239:SLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVH: 329
SecStr          :HHH  SSEEEE SSHHHHHHHHHHHHHTT --------- EEEE TTS HHHHHHHHHHHHHTS SEEEE GGGSSS   TT  EEEESS  SSHHHHHH:    
ExpBur          :beeebebbbbbbbeeeebeebbebbeeeeb---------ebbbbbeeeebeebbbbbbbbebebbbbbbbbebbbbbbebeebebbbbbbbbeebbbbbb:    
Contact         :                                                                            b                       

queryA       602:RIGRVGRAERMGLAISLVATEKEK: 625
                :****  **   *****  * *   :
7pmq_D_1     330:RIGRTARAGNSGLAISFCAPEEAQ: 353
SecStr          :HHTTSS TT  EEEEEEE GGGHH:    
ExpBur          :bbbbbbbeeeebbbbbbbbeebee:    
Contact         :   b  b

Protein Model on 7pmq_D_1_S_1 (TEMPLATE: 7pmq )

Input Residue Numbers for Focused Sites