[pdbjlvh2]Protein Model on 8oz0_CB

Protein Model on 8oz0_CB_1 (TEMPLATE: 8oz0 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	CB 1 (3)	polymer(polypeptide(L)) [378 aa]	Eukaryotic initiation factor 4A-I :IF4A1_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8oz0_CB_1 identity=33.9%

queryA       249:FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP: 347
                : *   *      *  *   *          *      *  **   * **** *          *           ***   *     *      * ****:
8oz0_CB_1     64:LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTP: 159
SecStr          :HHHHHTS EEEE  TT-S HHHHHHHHHHHH  SSS S  EEEE S HHHHHHHHHHHHHHTTTTT  EEE---E TTS SHHHHHHHHH   SEEEE H:    
ExpBur          :eeeeeeebbebbbeee-bebeebbbeeebeebeeeeeebbeeeebeeeeebeeebeeeeebbeeeeeeeee---bbeeeeeeebeeeeeeeebbbebbbe:    

queryA       348:GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP: 447
                :**  *      *        ******  ** *  * *          *      **   ***  * **     * *  *     * *             :
8oz0_CB_1    160:GRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN: 252
SecStr          :HHHHHHHHHTSS GGG   B BSS TTTTSHHHHHHHHHHHHTS SSS------  EEEES   H-HHHHHHGGG SS EEEE  SS SS S EE     :    
ExpBur          :ebeeeeeeeeeeeeeebeeeebeeeeebeeeebeeeeeeeeeeeeeee------ebeebbeeeee-eeeeeeeeeeeeeeeeeeeeeeeeeeeeeebbee:    

queryA       448:VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG: 547
                :*        **                        * *      *   *    *      ** **  *    * *                 *     **:
8oz0_CB_1    253:V--------ER------------------------EEWK--LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHG: 304
SecStr          : --------SS------------------------SSHH--HHHHHHHHHHTTTS-----EEEE  SSHHHHHHHHHHH---------HHTTS      T:    
ExpBur          :e--------eb------------------------eeeb--eeebeebbeebeee-----bbeeebeebeebeeeeeeb---------eeeeeeeeebbe:    

queryA       548:DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :*    **      *  *  * ** **  *****   *  ***  **    ** ***** **  * * **  *  *                ***   *:
8oz0_CB_1    305:DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE: 397
SecStr          :TS HHHHHHHHHHHTTT  SEEE  GGGGSS   TTEEEEE SS  SSHHHHHHHHHHS TTS  EE      TTTTHHHHHH-----HHHHT     :    
ExpBur          :ebeeeebeeeeeeeeeeeebbebbbeeeeeeeeeeebebbbeebeeeebeebebbeeebbeeebebebebbebeebbeeeeeb-----beeeeeeebe:

Protein Model on 8oz0_CB_1 (TEMPLATE: 8oz0 )

Input Residue Numbers for Focused Sites