[pdbjlvh2]Protein Model on 3eiq_C

Protein Model on 3eiq_C_1 (TEMPLATE: 3eiq )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	C 1 (D)	polymer(polypeptide(L)) [371 aa]	Eukaryotic initiation factor 4A-I :IF4A1_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3eiq_C_1 identity=32.7%

queryA       249:FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP: 347
                : *   *      *  *   *          *      *  **   * **** *          *           ***   *     *      * ****:
3eiq_C_1      72:LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTP: 167
SecStr          :HHHHTT  EEE  SS -SSSHHHHHHHHHHH  TTS S  EEEE SSHHHHHHHHHHHHHHGGGTT  EEE---    TTHHHHHHHHTTT  SEEEE H:    
ExpBur          :ebbbeeebbbbbbeee-ebbbbbbbbbbbeebeeeeebbbbbbbbbeeebbeebbebbeebbeebebebbb---bbeeeeeeebbeebeeebbbbbbbbb:    

queryA       348:GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP: 447
                :**  *      *        ******  ** *  * *          *      **   ***  * **     * *  *     * *             :
3eiq_C_1     168:GRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN: 260
SecStr          :HHHHHHHHHTSS STT  EEEE SHHHHHHTTTHHHHHHHHTTS TT ------EEEEE SS  H-HHHHHHHTT SS EEE         TT EEEEEE:    
ExpBur          :eebbebbeeeebeeeebebbbbbbbbebbeeebeeebeebbeebeeeb------bbbbbbeebee-ebeebbeeebeebbebebeeeeeebeebebbbee:    

queryA       448:VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG: 547
                :*        **                        * *      *   *    *      ** **  *    * *                 *       :
3eiq_C_1     261:V--------ER------------------------EEWK--LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMXX: 312
SecStr          : --------SS------------------------SHHH--HHHHHHHHHHS  S-----S EEE S HHHHHHHHHHH---------HTTT   EE --:    
ExpBur          :b--------ee------------------------eeeb--beebbebeeeeeee-----ebbbbbeeeeebeebbeeb---------eeeebebeeb--:    

queryA       548:DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :*    **      *       ** **  *****   *  ***  **    ** ***** **  * * **  *  *                ***   *:
3eiq_C_1     313:DMDQKERDVIMREFXXXXXXVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE: 405
SecStr          :  HHHHHHHHHHH ------ EEE SSGGGGS GGG SEEEESS  SSTHHHHHHS   SSSS   EEEEEE STHHHHHHHH-----HHHTT   EE:    
ExpBur          :eeeeebeebbeeee------bbbbbeebbeebebeebebbbbbbbbeeeebbeebbbbbeeeeebeebbbbbbeeeeeebeeb-----eeebebebee:

Protein Model on 3eiq_C_1 (TEMPLATE: 3eiq )

Input Residue Numbers for Focused Sites