Protein Model on 7pmq_C_1_O_1 (TEMPLATE: 7pmq )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) C 1 (B) polymer(polypeptide(L)) [457 aa] ATP-dependent RNA helicase DbpA :W8TF60_ECOLX
2 b O 1 (B) non-polymer(ADP) ADENOSINE-5'-DIPHOSPHATE 22W(Y) 24L(T) 29Q 47E(K) 49G 50S 51G 52K 53T 305N(E) 580D 582H(K) 608R 609A (identity: 64.3 %/36.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7pmq_C_1 identity=36.5%
queryA         1:MAAFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRG:  99
                :* ***   * *        *   *  *  **   * ** * **   * ****** **     *     *   *                           :
7pmq_C_1       3:MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---------------------------:  75
SecStr          :  BGGGSS S HHHHHHHHHTT  B  HHHHHHHHHHTTT  EEEE  TTSSHHHHHHHHHHHT  SSS S  ---------------------------:    
ExpBur          :eeebeebeebeeebeebbeeeeeeebeebbeebbebbbeeebbebbbebebebbbbbbbbbbeebeeeeeebb---------------------------:    
Contact         :                      b b    b                 b bbbbb                                              

queryA       100:SAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDID: 199
                :                                                                                                    :
7pmq_C_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       200:KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA: 299
                :                                                                                         **   * ****:
7pmq_C_1      75:----------------------------------------------------------------------------------------QALVLCPTRELA:  86
SecStr          :---------------------------------------------------------------------------------------- EEEE SSHHHH:    
ExpBur          :----------------------------------------------------------------------------------------bbbbbbbbebbb:    

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK: 399
                : *             * *   *   **     *   *     * * ***** *    *   *     ** ****  *  * ** *       *       :
7pmq_C_1      87:DQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------A: 178
SecStr          :HHHHHHHHHHTTSSSS  E--EEE TTS HHHHHHHHSS  SEEEE HHHHHHHHHHT   GGG  EEEEETHHHHTSHHHHHHHHHHHTTS ------S:    
ExpBur          :eebbebbeebbebeeebeb--bbbbbeeebeebeeebeebbbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeeeeeebeebeeebe------e:    
Contact         :     b                                                                                              

queryA       400:RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR: 499
                :  *    ***         *      *        *  *           *      *   *  *                           *      *:
7pmq_C_1     179:SRQTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----R: 236
SecStr          :SSEEEEEES   HH-HHHHHGGG SS EEEESS TT   -----------SEEEEEEE  STTHH-------------------------HHHH-----H:    
ExpBur          :ebbbbbbbbbbeee-bbeebeebbeeeeebeebeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----b:    

queryA       500:AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY: 599
                :    *       ** ** **          *          *   ****     * * * **  *  * *  ******* **     * *  *       :
7pmq_C_1     237:LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH: 327
SecStr          :HHHHH  SSEEEE SSHHHHHHHHHHHHHHT --------- EEEE TTS HHHHHHHHHHHHHTS SEEEE GGGSSS   TT  EEEESS  SSHHHH:    
ExpBur          :bbbeeebeebbbbbbeeeebeebbebbeeeeb---------ebbbbbeeeebeebbbbbbbbebebbbbbbbbebbbbbbebeebebbbbbbbbeebbbb:    
Contact         :                                                                                b b                 

queryA       600:VHRIGRVGRAERMGLAISLVATEKEK: 625
                :******  **   *****  * *   :
7pmq_C_1     328:VHRIGRTARAGNSGLAISFCAPEEAQ: 353
SecStr          :HHHHTTSS TT  EEEEEEE HHHHT:    
ExpBur          :bbbbbbbbbeeeebbbbbbbbeebee:    
Contact         :        bb

Input Residue Numbers for Focused Sites

ex) 2,15,123