Protein Model on 5sup_C_1_H_1
(TEMPLATE: 
5sup
)Protein Model on 5sup_C_1_H_1
(TEMPLATE: 5sup
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [381 aa] | ATP-dependent RNA helicase SUB2 :SUB2_YEAST | |
| 2 | b | H 1 (E) | polymer(polyribonucleotide) | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | 294P(N) 295S(A) 296R 324I(Y) 325G 326G 327V(T) 346T 347P 348G 349R 352D(A) 374G(K) 378Q(E) 384I(M) 514R(K) 515T(S) 516K(T) 546H 547G 548D(H) 554R 572T 573D 574V (identity: 52.0 %/31.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5sup_C_1 identity=31.8% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
:* ** * * * ** * *** * * *** * * :
5sup_C_1 8:FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-----------------------------------------: 66
SecStr : GGG HHHHHHHHHTT S HHHHHHHHHHTTT EEEE TTSSSHHHHHHHHHH-----------------------------------------:
ExpBur :eeebebeeebbebbeebeeeeebebbeebbeebbeeebbbbbbbbbeebebbbbbbbbb-----------------------------------------:
queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
: :
5sup_C_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELA: 299
: * ****:
5sup_C_1 67:-------------------------------------------------------------------------------QLDPVPGEVAVVVICNARELA: 87
SecStr :-------------------------------------------------------------------------------H TT EEEE SSHHHH:
ExpBur :-------------------------------------------------------------------------------ebeeeeeebbbbbbbbbebbb:
Contact : bbb
queryA 300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS: 396
: * * * ** * ** * * *** ***** ** ** * * ** * * * * * :
5sup_C_1 88:YQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATP: 182
SecStr :HHHHHHHHHHSTT --TT EEEE TTS HHHHHHHHHSTTT SEEEE HHHHHHHHTTTSS TT EEEEETHHHHHHSHH---HHHHHHHHHTSS :
ExpBur :ebbeeebeebbeeb--eebebbbbbbeeeeeebbeebeeeeebbbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeee---beebbeebbeebe:
Contact : bbbb bbbb b b b b
queryA 397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496
: * ** **** * * * * * * * * * :
5sup_C_1 183:RDK--QVMMFSATL-SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------LQQYYIKLEE---REKNRKLA-----------------: 242
SecStr :SSS--EEEEEES - TTTHHHHHTT SS --EEE SGGGGS TT---------------EEEEEEE G---GGHHHHHH-----------------:
ExpBur :eeb--bbbbbbbbb-eeebbeebeebbeee--eebeeeeeeebbbeb---------------bebbebebee---eebeeebb-----------------:
queryA 497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK: 596
: * *** * * ** * ** ** * *** ***** ** * * :
5sup_C_1 243:--QLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEA: 331
SecStr :--HHHHHS SEEEEE SSHHHHHHHHHHH---------HHTT EEEE SSS HHHHHHHHHHHHTTS SEEEE GGGTSS TTEEEEEESS SSH:
ExpBur :--ebbeebebebbbbbbeebeebeebbeeb---------eeeebebbbbbeebebeebbeebebbeeeeeebbbbbebbbbbbebeebbbbbbbbbbeeb:
Contact : bbb bbb b bbb
queryA 597:QNYVHRIGRVGRAERMGLAISLVATEKEK: 625
: * ** ** ** ***** * :
5sup_C_1 332:DQYLHRVGRAGRFGTKGLAISFVSSKEDE: 360
SecStr :HHHHHHHTTSSTTS EEEEEEE SHHHH:
ExpBur :bbbbbbbbbbbbeeeebbbbbbbbeeebe:
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[assembly_id:3]
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