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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | C 1 (3) | polymer(polypeptide(L)) [656 aa] | ATP-dependent RNA helicase DBP10 :DBP10_YEAST | |
2 | b | A 1 (1) | polymer(polyribonucleotide) | 25S ribosomal RNA | 297E 326G 327V(D) 329A(L) 349R 352D(H) 355S(V) 362S(K) 382D(E) (identity: 33.3 %/36.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8v87_C_1 identity=36.9% |
queryA 288:KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRM: 387 : * * ****** ** * * * ** * ** * * **** * * * * * **** * * * : 8v87_C_1 209:RAVILSPSRELAMQTFNVFKDFAR---GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNEL: 305 SecStr :SEEEE SSHHHHHHHHHHHHHHHT---TS EEEE TTS HHHHHHHHHT SEEEE HHHHHHHHHHHT GGG EEEEE HHHHHHHTTHHHHHHH: ExpBur :bbbbbbbeeeebeebbeebeebbe---eeebeebbbbeeeebeebbeebeeebbbbbbbbebbbebbebbeeebeebebbbbbbbbebbeeebeebbeeb: Contact : b bb b b b b b b queryA 388:HNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE: 487 : * * **** * * * * * * : 8v87_C_1 306:LASLPTTR------QTLLFSATLPNSLVDFVKAGLVN-PVLVRLDAETKVSENLEMLFL-----------------------------------------: 357 SecStr :HHHS SS ------EEEEE SS HHHHHHHHHH SS- EEE HHHHS SS B EE-----------------------------------------: ExpBur :beebbeeb------bbbbbbbbbbeebbebbeeebee-eebbbbeeeeebbeebbbbbb-----------------------------------------: queryA 488:AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC-------------------------------------------: 544 : : 8v87_C_1 358:---------------------------------------------------------SSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNXXXXXXX: 400 SecStr :---------------------------------------------------------E STTHHHHHHHHHHTTS HHHHHHHHHH -------: ExpBur :---------------------------------------------------------bbeeeebbbbbbbbbeebbebeeeeeeeeeeeeeee-------: queryA 545:--------------------------------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIH: 582 : * * ** * * * * ******* ** : 8v87_C_1 401:XXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSEKATILFVPTRHHVEYISQLLRDCGYLISY-IYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIP: 499 SecStr :---------------------------- STT EEEE SHHHHHHHHHHHHHHHT EEE-E TTS HHHHHHHHHHHHHTS SEEEE HHHHHTS : ExpBur :----------------------------eeeeebbbbbbbbbbbbebbbebbeebebbbbe-bbeebeeeeeeebbebbeeeebbbbbbbbebbbebebb: queryA 583:GVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA: 620 : *** *** *** ** ** * * * **: 8v87_C_1 500:MLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVA: 537 SecStr : SEEEESS SSHHHHHHHHTTSSTTS EEEEEE : ExpBur :ebbbbbbbbbbbebbbbbebbbebbeeeeebbbbbbbb: |