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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | BB 1 (SW) | polymer(polypeptide(L)) [444 aa] | ATP-dependent RNA helicase DDX18 :DDX18_HUMAN | |
2 | b | RA 1 (SL) | polymer(polypeptide(L)) [243 aa] | Ribosomal L1 domain-containing protein 1 :RL1D1_HUMAN | 586Y(W) (identity: 0.0 %/38.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8fkv_BB_1 identity=38.7% |
queryA 15:QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR: 114 : * ** * ** ** * * * * ** ****** ** ** : 8fkv_BB_1 192:KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI--------------------------------------------------: 241 SecStr :HHHHHHT B HHHHHHHHHHHHT EEEE TTSSHHHHHHHHHHHHH--------------------------------------------------: ExpBur :ebbeebeeeebeebbbebbebbeeeebbbbbbebeeebbbbbbbbbbbbb--------------------------------------------------: queryA 115:EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL: 214 : : 8fkv_BB_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 215:AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYI: 313 : * * * ** * **** ** * : 8fkv_BB_1 241:--------------------------------------------------------------IVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH: 278 SecStr :--------------------------------------------------------------HHHHT TTT EEEE SSHHHHHHHHHHHHHHGGG : ExpBur :--------------------------------------------------------------beeeebeeeebbbbbbbbbbbbbbebbeebbebbbeeb: queryA 314:DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS: 412 : ** ** * ** * * **** ** * ** **** * * * * * *** : 8fkv_BB_1 279:VHTYG---LIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT------RRQTMLFSAT---: 366 SecStr : S EE---E TTS HHHHHHHHHH SEEEE HHHHHHHHHH TT TT EEEE SHHHHHHHT HHHHHHHHHHS S------S EEEEEESS---: ExpBur :ebeeb---ebbeeeeeeebeeebeebbbbbbbbbebbbebbeebeebeeeebbbbbbbbbbbbbeeeeeeebeebbeebee------ebbbbbbbbe---: queryA 413:FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF: 512 : : 8fkv_BB_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 513:CRTKIDCDNLEQYFIQQGGGPDKKGHQFS-----------------------------------------------------------------------: 541 : : 8fkv_BB_1 367:-----------------------------QTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMS: 437 SecStr :----------------------------- HHHHHHHHHHS SS EEEE TTSEEEEEE STTHHHHHHHHHHHTTTSEEEEEESSHHH: ExpBur :-----------------------------eeeebeebbeebbeeeeeebebeeeeeeeeeeebebbbbebebeebbbbbbbbbeebeeebbbbbbbbbbb: Contact : b bbb b queryA 542:---------------CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR: 605 : ** * * * * * ******** ** * ** * ** **: 8fkv_BB_1 438:VKYHYELLNYIDLP-VLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGR: 515 SecStr :HHHHHHHHHHTT - EEE TTS HHHHHHHHHHHHH SSEEEEEEHHHHTT SEEEE S S HHHHHHHHHH: ExpBur :bebbeebbeeeebe-bebbbbebebeebeebbeebeeeeeebbbbbbbbbbeeebbebebbbbbbbbebbebbbebbbe: Contact : b |