Protein Model on 7ppz_B_1 (TEMPLATE: 7ppz )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description
1 a A(DDX1_HUMAN) B 1 (B) polymer(polypeptide(L)) [371 aa] Eukaryotic initiation factor 4A-I :IF4A1_HUMAN
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7ppz_B_1 identity=31.7%
queryA       249:FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG: 348
                : *   *      *  *   *          *      *  **   * **** *          *          *                  * *****:
7ppz_B_1      52:LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASC--HACIXXXXXXXXVQKLXXXAPHIIVGTPG: 148
SecStr          :HHHHTT  EEE   TT-GGGSHHHHHHHHTT  TTS S  EEEE SSHHHHHHHHHHHHHHHHHHT  E--EEE --------    ---  SEEEE HH:    
ExpBur          :bbbeeeebbbbbbeeb-bbebbbbbbbbbebbeeeeebbbbbbbbbbeebbeebbebbebbbeebebeb--ebbe--------eeee---ebbbbbbbbe:    

queryA       349:RLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPV: 448
                :*  *      *        ******  ** *  * *          *      **   ***  * **     * *  *     * *             *:
7ppz_B_1     149:RVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINV: 241
SecStr          :HHHHHHHTTSS  TT  EEEEETHHHHHHTT HHHHHHHHHTS TT ------EEEEE S   H-HHHHHHHHH SS EEEEEE  SSB TT EEEEEEE:    
ExpBur          :ebeebbeeeebeeeebebbbbbbbbbbbeeebeeebeebeeebeeeb------bbbbbbbebee-ebeebbeebbeebbebebeeeeeebeebebbeeeb:    

queryA       449:NPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD: 548
                :        **                        * *      *   *    *      ** **  *    * *                 *     ***:
7ppz_B_1     242:--------ER------------------------EEWK--LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHGD: 293
SecStr          :--------ES------------------------GGGH--HHHHHHHHHHS  S----- EEEE S HHHHHHHHHHH---------HHTT  EEE  TT:    
ExpBur          :--------ee------------------------eeeb--bebbbebeeebebe-----bbbbbbeeeebbeebeeeb---------eeeebebbbbbee:    

queryA       549:RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :    **      *  *  * ** **     **   *  ***  **    ** ***** **  * * **  *  *                ***   *:
7ppz_B_1     294:MDQKERDVIMREFRSGSSRVLITTDXXXXXIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE: 385
SecStr          :S HHHHHHHHHHHHHTS SEEEE  -----   S  SEEEESS  SSHHHHHHHH B SSS    EEEEEEEHHHHHHHS H-----HHHHTS  EE:    
ExpBur          :beeeeeeebbeebeeeebebbbbbe-----eeeeeeebbbbbbbbeeeeebbebbbeeeeeebeebbbbbbbeeeeeebeeb-----eeebebebee:

Input Residue Numbers for Focused Sites

ex) 2,15,123