[pdbjlvh2]Protein Model on 3nbf_B

Protein Model on 3nbf_B_1 (TEMPLATE: 3nbf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [206 aa]	Heat resistant RNA dependent ATPase :Q72GF3_THET2

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3nbf_B_1 identity=36.7%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*      ***  *        ** * *   ** * * *    * ** *** **  *           *  * *      *                    :
3nbf_B_1       3:FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPS---QERGRKPRALVLT--------------------:  79
SecStr          :GGGS   HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE  TTS  THHHHHHHHHH    ---  TT   SEEEE --------------------:    
ExpBur          :beebebeeebeebbeeeeeeebbebbeebbeebeeeebbbbbbeeeeeeebbbbbbbbeebeee---eeeebebbbbbbb--------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
3nbf_B_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303
                :                                                                                   * **   * **** *  :
3nbf_B_1      73:-----------------------------------------------------------------------------------PRALVLTPTRELALQVA:  89
SecStr          :----------------------------------------------------------------------------------- SEEEE SSHHHHHHHH:    
ExpBur          :-----------------------------------------------------------------------------------bbbbbbbbbeebbeebb:    

queryA       304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403
                :            * *      **     *   *  * * ** ****  *    * * ** *   ******  ** *            *         * :
3nbf_B_1      90:SELTAVA-----PHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------PSRQT: 178
SecStr          :HHHHHH -----TTS EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHHTSS  TT SEEEEE HHHHHHTT HHHHHHHHHTS ------TTSEE:    
ExpBur          :eebeebb-----eebebbbbbbeeeeeebeebbeebbbbbbbbbebbbebeeeebbebeebebbbbbebbebeeeeeeeebbebbeebe------eebbb:    

queryA       404:IVCSATLHSFDVKKLSEKIMHFPTWVDL: 431
                :   **** *   * * *  *  *     :
3nbf_B_1     179:LLFSATLPSW-AKRLAERYMKNPVLINV: 205
SecStr          :EEE SS  HH-HHHHHHHH SS EEEE :    
ExpBur          :bbbbeebeeb-beebbeebbeeeeebee:

Protein Model on 3nbf_B_1 (TEMPLATE: 3nbf )

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