Protein Model on 2j0q_B_1_I_1
(TEMPLATE: 
2j0q
)Protein Model on 2j0q_B_1_I_1
(TEMPLATE: 2j0q
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [390 aa] | ATP-DEPENDENT RNA HELICASE DDX48 :DDX48_HUMAN | |
| 2 | b | I 1 (I) | polymer(polypeptide(L)) [63 aa] | PROTEIN CASC3 :CASC3_HUMAN | 333L(I) 334S(R) 337E(D) 338N(Y) 357G(R) 360N(R) 361L(T) 362S(R) 384I 385N(Y) 388H(Y) 389N(R) 390Q(Y) 391I(L) 392P 393Q(P) 420E(N) 421K 422I(F) 424H(T) 458R 483E 484M(E) 486S(K) 514R(N) 515T 517I(R) 518D(K) 521N(W) 591T(D) 593P 594D(N) 595E(N) 596K(R) 620A(K) 623K(D) 626V(I) 629H(D) (identity: 18.4 %/34.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:2j0q_B_1 identity=34.4% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
: * ** * ** * * * ** * *** *** * * :
2j0q_B_1 38:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------: 97
SecStr :SSGGG HHHHHHHHHHT S HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHH----------------------------------------:
ExpBur :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbebebbbbbbbbe----------------------------------------:
queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
: :
2j0q_B_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293
: *** :
2j0q_B_1 98:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 112
SecStr :-------------------------------------------------------------------------------------T TTS S EEEE :
ExpBur :-------------------------------------------------------------------------------------ebeeeeeebbbbbbb:
Contact : b
queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
:* **** * * *** * * * ***** * * ******* * * * * :
2j0q_B_1 113:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 209
SecStr :SSHHHHHHHHHHHHHHGGGTT--- EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHTTSS S EEEEESHHHHTSTTTHHHHHHHHHHS S:
ExpBur :bbebbbebbbeebeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbbbbeeebbebeebebbbbbbbbebbeeebeeebeebeeebee:
Contact : bb bb b bbb bb bbbbbb
queryA 394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493
: * ** **** * * * * * * ** * * * :
2j0q_B_1 210:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 268
SecStr :S ------EEEEEES - HHHHHHGGGT SS EEE TTT S SSEEEEEEE --------SS------------------------TTHH--HHHHH:
ExpBur :eb------bbbbbbbbb-eeebbebbeebbeebbbbbbeeeebbeeebebbbbeb--------ee------------------------eeeb--bebbb:
Contact : bbb b b bb b
queryA 494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593
: * * ** *** ** * * * *** ** * * * ** *** *** * * ** **:
2j0q_B_1 269:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 354
SecStr :HHHHHHTTS-----EEEEE S HHHHHHHHHHH---------HHTT EEE TTS HHHHHHHHHHHHHTSS EEEE GGGSSS TTEEEEEESS :
ExpBur :ebbebbeee-----bbbbbbeeeebbeebbeeb---------eeeebebbbbbeebebeebeebbeebeebebebbbbbebbbbbbebeebbbbbbbbbb:
Contact : bb bb b b b
queryA 594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
: * ***** ** * * ** * * * *:
2j0q_B_1 355:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 401
SecStr :SSHHHHHHHHTTSSTTS EEEEEEE GGGHHHHHHH-----HHHTT EE:
ExpBur :eeebbbbbbbbbbbbeeeebbbbbbbeeeeeeebeeb-----beebebebee:
Contact :bbb b b b b
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[assembly_id:2]
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