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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | B 2 (B) | polymer(polypeptide(L)) [206 aa] | ATP-dependent RNA helicase p54 :DDX6_HUMAN | |
2 | b | A 1 (A) | polymer(polypeptide(L)) [206 aa] | ATP-dependent RNA helicase p54 :DDX6_HUMAN | 329A(L) 330R 333L(I) 334S(M) 337E(D) 356T(K) 357G 360N(K) (identity: 25.0 %/39.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:1vec_B_2 identity=39.3% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* * ** * * ** **** * * * * * * ** ** ** : 1vec_B_2 5:FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE-----------------------------------------: 63 SecStr :GGGS HHHHHHHHHHT S HHHHTTHHHHHHT EEEE SSSTTHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebbebbeeeeeeebeebbeebbeebbeeebbbbebeeeeebbbbbbbbbbb-----------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 1vec_B_2 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVEP: 294 : * *: 1vec_B_2 64:------------------------------------------------------------------------------------RLDLKKDNIQAMVIVP: 79 SecStr :------------------------------------------------------------------------------------H TTS S EEEE S: ExpBur :------------------------------------------------------------------------------------ebeeeeeebbbbbbbb: queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV: 394 : **** * * * * ** ** * * * **** ** * * ****** **** ** * * : 1vec_B_2 80:TRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTL: 174 SecStr :SHHHHHHHHHHHHHHTGGGS E--EEE TTS HHHHHHHHTS EEEE HHHHHHHHHTTSS TT EEEEESHHHHTST---TTHHHHHHHHHTS: ExpBur :eeebbeebbebbeebbeebeebeb--bebbeeeeeeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbee---eeeeebeebbeeb: Contact : bb bb b bb b queryA 395:TSDGKRLQVIVCSAT: 409 : * * ***: 1vec_B_2 175:P---KNRQILLYSAT: 186 SecStr : ---TT EEEEEES : ExpBur :e---eebbbbbbbee: |