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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | AA 1 (NI) | polymer(polypeptide(L)) [598 aa] | ATP-dependent RNA helicase DDX54 :DDX54_HUMAN | |
2 | b | N 1 (LG) | polymer(polypeptide(L)) [134 aa] | 60S ribosomal protein L23 :RL23_HUMAN | 544C(H) 546H(Y) 548D(A) 550K(D) 552H(T) 553E(A) 556Q(I) (identity: 0.0 %/34.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8fkt_AA_1 identity=34.9% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* ** ** ** ** ** * ** * ****** * * : 8fkt_AA_1 98:FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE-----------------------------------------: 156 SecStr :HHHHT HHHHHHHHHHT S HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHH-----------------------------------------: ExpBur :eeeeeeeeebeebeeeeeeeeeeebbeebeeebeeeebbeeeeeeeeeeeebeeeebbe-----------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 8fkt_AA_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-----------KALIV: 292 : *** : 8fkt_AA_1 157:------------------------------------------------------------------------------------RLKTHSAQTGARALIL: 172 SecStr :------------------------------------------------------------------------------------HS S SS S EEEE: ExpBur :------------------------------------------------------------------------------------eeeeeeeeeeebbeee: queryA 293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP: 392 : * **** *** * * * ** ** ** * ** ***** * * * * **** * * *: 8fkt_AA_1 173:SPTRELALQTLKFTKELGKFTG---LKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP: 269 SecStr : SSHHHHHHHHHHHHHHTTTT --- EEEE TTS HHHHHHHHTT SEEEE HHHHHHHHHHHT TT EEEEETHHHHHHTT HHHHHHHHHHS : ExpBur :beeeeebeeeeeeeeeeeeebe---eeebebeeeeeeeebeeeeeeebbebbbbeebeeeeeeeeeeeeeebebeeeeeebbbbeeebeebeeeeeeebe: queryA 393:QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL: 492 : * * **** * * * * * * * ** : 8fkt_AA_1 270:----GGH--QTVLFSATLPKLLVE-FARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDT--------KAAVLLHLLH--NVVRP---------------: 337 SecStr :----TT --EEEEEES B HHHHH-HHHHH SS EEE HHHHS TT EEEEEE STT--------HHHHHHHHHH--TTS T---------------: ExpBur :----eeb--eeeebbeeeeeebee-eeeeebeeeeeeeeeeeeebeeebebbbbbbeeeb--------bbbbbbbbbe--eebee---------------: queryA 493:KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL: 592 : ** * ** * * ** * ** ** * * ** ** **** ** *** : 8fkt_AA_1 338:-------------QDQTVVFVATKHHAEYLTELLTTQ---------RVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSF: 415 SecStr :-------------TS EEEEESSHHHHHHHHHHHHHT---------T EEEE TTS HHHHHHHHHHHHHTS SEEEEEHHHHTTS SEEEESS : ExpBur :-------------ebbbbbbbbbeebbebbbebbeee---------ebebbebbeebeeeeeeebbeebeeeebebbbbbeebbeebebeebbbbbbbbb: Contact : b b b b bb b queryA 593:PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR-LKEDGGC: 649 :* ** *** ** * * * **** * * *** * : 8fkt_AA_1 416:PAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPLKEPSGV: 473 SecStr : SSHHHHHHHTTTT BTTB EEEEEE GGGHHHHHHHHHHHT EE SSS H: ExpBur :bbebeebbebbeebeeeeeebbbbbbbbeebbbbbbbbbeebeeeeeebeeeeeeeee: |