[pdbjlvh2]Protein Model on 8pnk_A

Protein Model on 8pnk_A_1 (TEMPLATE: 8pnk )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [256 aa]	ATP-dependent RNA helicase DED1 :DED1_YEAST

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8pnk_A_1 identity=39.1%

queryA        25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124
                :**  *  * *    * *    * ******* *  **      *                                                         :
8pnk_A_1      85:PTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKT---------------------------------------------------------: 127
SecStr          :  TTHHHHHHHHHTT  EEEE  GGGTHHHHHHHHHHHHHHHH---------------------------------------------------------:    
ExpBur          :bebbbebbbbbbeeebbbbbbbeeebebbbbbbbbbbbbbbee---------------------------------------------------------:    

queryA       125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224
                :                                                                                                    :
8pnk_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA------------------PKALIVEPSRELAEQTLNNI: 306
                :                                                                                * * *  * **** *     :
8pnk_A_1     128:--------------------------------------------------------------GPSPQPEXXXXXXXRKAYPTAVIMAPTRELATQIFDEA: 165
SecStr          :--------------------------------------------------------------       -------  B  SEEEE SSHHHHHHHHHHH:    
ExpBur          :--------------------------------------------------------------beeeeee-------eebbbbbbbbbbeeebbeebbeeb:    

queryA       307:KQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC: 406
                :* *               **     **   * * *  * ***** **   **  *  *  *******  *  *    *          *  * * *    :
8pnk_A_1     166:KKFTY---RSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDC-DMTPVGER-QTLMF: 260
SecStr          :HHHTT---TSS  EEEE SSS HHHHHHHHHT  SEEEE HHHHHHHHHTT B  TT  EEEESSHHHHHHTT HHHHHHHHHTS-    BTTB-EEEEE:    
ExpBur          :eebbb---bbbbebbbbbeebebeebbeebeeebbbbbbbbbbbbebbeeebbbbebbebbbbbbbbebbeeebeeebbebbeee-ebbeeeeb-bbbbb:    

queryA       407:SATLHSFDVKKLSEKIM: 423
                :***    *   *     :
8pnk_A_1     261:SATFPA-DIQHLARDFL: 276
SecStr          : S   H-HHHHHHHHH :    
ExpBur          :beeeee-ebeebbeebb:

Protein Model on 8pnk_A_1 (TEMPLATE: 8pnk )

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