[pdbjlvh2]Protein Model on 6aib_A

Protein Model on 6aib_A_1 (TEMPLATE: 6aib )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [201 aa]	DEAD-box ATP-dependent RNA helicase CshA :CSHA_STAAR

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6aib_A_1 identity=37.1%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :* * *      *  * *    ** **  ***  * * * *  * ** ****** ** *  *                                       :
6aib_A_1       4:FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKV---------------------------------------:  64
SecStr          : GGGT  HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEE   SSGGGHHHHHHHHHHHH---------------------------------------:    
ExpBur          :beebebeeebbebbeeeeeeebeebbeebbeebeeeebbbbebeeeeebbbbbbbbbbeeb---------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
6aib_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP------KALIVEPSRE: 297
                :                                                                                            **  * **:
6aib_A_1      65:------------------------------------------------------------------------------------VGKQGVQSLILAPTRE:  80
SecStr          :------------------------------------------------------------------------------------TT  S  EEEE SSHH:    
ExpBur          :------------------------------------------------------------------------------------eeeeebbbbbbbbeee:    

queryA       298:LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD: 397
                :** *       *               **     *   *  *  ********  *      *       * *****     *  *        ** *   :
6aib_A_1      81:LAMQVAEQLREFSR---GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV---: 174
SecStr          :HHHHHHHHHHHHTT---TS   EEEE TTS HHHHHHHHHT  SEEEE HHHHHHHHHHTSS  TT  EEEEESHHHHHHTT HHHHHHHHHHS  T---:    
ExpBur          :bbeebbebbeebbe---ebebebbbbbeeeebeebbeebeeebbbbbbbbebbbebbeeeebeeeebebbbbbbbbebeeeebeeebeebbeebeee---:    

queryA       398:GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV: 429
                :    *    ***        *    *  *   :
6aib_A_1     175:--QRQTMLFSATMPK-AIQALVQQFMKSPKII: 203
SecStr          :--T EEEEE SS  H-HHHHHHHHHS S EEE:    
ExpBur          :--ebbbbbbbeeeee-ebebbbeebbeebeeb:

Protein Model on 6aib_A_1 (TEMPLATE: 6aib )

Input Residue Numbers for Focused Sites