[pdbjlvh2]Protein Model on 1s2m_A

Protein Model on 1s2m_A_1 (TEMPLATE: 1s2m )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [377 aa]	Putative ATP-dependent RNA helicase DHH1 :DHH1_YEAST

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1s2m_A_1 identity=35.8%

queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *       *      *     *  ** * **    * * *  *  * *** ** **    *   *   *                              :
1s2m_A_1      22:TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ------------------------------:  91
SecStr          : GGGG   HHHHHHHHHTT  S  HHHHHHHHHHHHT  EEEE  TTS HHHHHHHHHHHH  TTS S  ------------------------------:    
ExpBur          :bbeeeebeeebbebbeeeebebbbbbbeebbebbeeeebbbbbbeeebebbbbbbbbbbeebeeeeeebb------------------------------:    

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
1s2m_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT: 302
                :                                                                                  *   ***  * **** **:
1s2m_A_1      88:----------------------------------------------------------------------------------NKIQALIMVPTRELALQT: 105
SecStr          :---------------------------------------------------------------------------------- S  EEEE SSHHHHHHH:    
ExpBur          :----------------------------------------------------------------------------------eebbbbbbbeeeebbeeb:    

queryA       303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402
                :        *             **   **    *   * * ******  ** *     **       ****  **      *       *         *:
1s2m_A_1     106:SQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH------Q: 196
SecStr          :HHHHHHHTTTTT---  EEEE SSS HHHHHHHTTS  SEEEE HHHHHHHHHTT S  TT  EEEEESHHHHSSHHHHHHHHHHHTTS SS ------E:    
ExpBur          :bebbeebbeebe---bebbbbbeeeeeeebeeebeeebbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeeebebbeebbeebeeeb------b:    

queryA       403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501
                :    ***     **    *  * *    *  *      *     *    *   *     *  *                                     :
1s2m_A_1     197:SLLFSATF-PLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQI-------------------------------------: 258
SecStr          :EEEEES  - HHHHHHHHHH SS EEES  SS B TTEEEEEEE  GGGHHHHHHHHHHHS  -------------------------------------:    
ExpBur          :bbbbbeeb-eebbeebbeeebeeeeebebeeebebeebebbebebeeeebbebbeebbeebeb-------------------------------------:    

queryA       502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601
                :      ******        *       *          **   *   *  **      *  * ** * * *   *****  *  ***   *     * *:
1s2m_A_1     259:-----NQAIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLH: 344
SecStr          :-----SEEEEE SSHHHHHHHHHHHHHHT---------  EEEE TTS HHHHHHHHHHHHTTSSSEEEESS SSSS   TTEEEEEESS  SSHHHHHH:    
ExpBur          :-----ebbbbbbeebeebeebbeebeeee---------bebeebbeebebeebbebbbbbeeeebebbbbbebbbbbbebeebbbbbbbbbbeebeebbe:    

queryA       602:RIGRVGRAERMGLAISLV: 619
                :**** **    **** * :
1s2m_A_1     345:RIGRSGRFGHLGLAINLI: 362
SecStr          :HH BSS TT  EEEEEEE:    
ExpBur          :bbbbeeeeeeebbbbbbb:

Protein Model on 1s2m_A_1 (TEMPLATE: 1s2m )

Input Residue Numbers for Focused Sites