[pdbjlvh2]Protein Model on 1qde_A

Protein Model on 1qde_A_1 (TEMPLATE: 1qde )

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[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [203 aa]	TRANSLATION INITIATION FACTOR 4A :IF4A_YEAST

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1qde_A_1 identity=35.9%

queryA        25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124
                :*  **   *  *  * ***  *  * **** ***   *      *  *                                                    :
1qde_A_1      37:PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ----------------------------------------------------:  84
SecStr          :  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHHH  TT  S  ----------------------------------------------------:    
ExpBur          :beebbbbbbbbbbeeebbbbebeeeeebbbbbbbbbbeebeeeeebbb----------------------------------------------------:    

queryA       125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224
                :                                                                                                    :
1qde_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII: 324
                :                                                             ** **   * **** *            *         *:
1qde_A_1      82:-------------------------------------------------------------APQALMLAPTRELALQIQKVVMALAFHMD---IKVHACI: 117
SecStr          :-------------------------------------------------------------S  EEEE SSHHHHHHHHHHHHHHTTTS ---  EEEE :    
ExpBur          :-------------------------------------------------------------bbbbbbbbbeeebbeebeebbeebbeebe---bebebbe:    

queryA       325:GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH: 424
                :*          *     ********  *                *****  ** *    *       *  *      **   ***    **     * * :
1qde_A_1     118:GXXXXXXXXXGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT------QVVLLSATMPN-DVLEVTTKFMR: 209
SecStr          :----------  TT -SEEEE HHHHHHHHHTTSS  TT  EEEEETHHHHHHTT HHHHHHHHHHS TT ------EEEEEESS  H-HHHHHHHHH S:    
ExpBur          :----------ebeeb-bbbbbbbeebbebbeeeebebeebebbbbbbbbebbeeeeeeebbebbeebeeeb------bbbbbbbeeee-ebeebbeebbe:    

queryA       425:FPTWV: 429
                : *   :
1qde_A_1     210:NPVRI: 214
SecStr          :S EEE:    
ExpBur          :ebbeb:

Protein Model on 1qde_A_1 (TEMPLATE: 1qde )

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