[pdbjlvh2]Protein Model on 5sup_A_1_J

Protein Model on 5sup_A_1_J_1 (TEMPLATE: 5sup )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [383 aa]	ATP-dependent RNA helicase SUB2 :SUB2_YEAST
2	b		J 1 (A)	non-polymer(ADP)	ADENOSINE-5'-DIPHOSPHATE	4F 22W(F) 24L(H) 25P 26T(S) 29Q 47E(K) 49G 50S(L) 51G 52K 53T 580D 608R 609A(F) (identity: 60.0 %/31.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5sup_A_1 identity=31.8%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*      **   *        *   *   **    * ***  *  * ***  *     *                                         :
5sup_A_1       8:FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-----------------------------------------:  66
SecStr          :GGGG   HHHHHHHHHTT  S  HHHHHHHHHHTTT  EEEE  TTSSSHHHHHHHHHH-----------------------------------------:    
ExpBur          :beebebeeebbebbeebeeeebbebbeebbeebeeeebbbbbbbbbeebebbbbbbbbb-----------------------------------------:    
Contact         :b                 b bbb  b                 b bbbbb                                                  

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
5sup_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELA: 299
                :                                                                                    *           ****:
5sup_A_1      67:-------------------------------------------------------------------------------QLDPVPGEVAVVVICNARELA:  87
SecStr          :-------------------------------------------------------------------------------H    TT   EEEE SSHHHH:    
ExpBur          :-------------------------------------------------------------------------------ebeeeeebbbbbbbbebebbb:    

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS: 396
                : *  *    * **   *        **         * *      *** *****  **      ** *   * ** *  *         *    *   * :
5sup_A_1      88:YQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATP: 182
SecStr          :HHHHHHHHHHTTT --TT  EEEE TTS HHHHHHHHH TTT  SEEEE HHHHHHHHTTTSS  TT  EEEEETHHHHHHSHH---HHHHHHHHHTTS :    
ExpBur          :ebbeeebeebbeeb--eebebbbbbbeeeeeebbeebeeeeebbbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeee---beebbeebbeebe:    

queryA       397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496
                :  *  **   **** *             *        *    * *                *    *           *  *                 :
5sup_A_1     183:RDK--QVMMFSATL-SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------LQQYYIKLEE---REKNRKLA-----------------: 242
SecStr          :SSS--EEEEEES  - TTTHHHHHTT SS --EEE   SGGGGS TT---------------EEEEEEE  G---GGHHHHHH-----------------:    
ExpBur          :eeb--bbbbbbbbb-beebbeebeebbeee--eebeeeebeebbbee---------------bebbbbebee---eebeebbe-----------------:    

queryA       497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK: 596
                :           * ***         *                 *     **  *  **      **    *    ***  *****      **  *  * :
5sup_A_1     243:--QLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEA: 331
SecStr          :--HHHHHS  SEEEEE SSHHHHHHHHHHH---------HHTT  EEEE SSS HHHHHHHHHHHHTTS SEEEE GGGSSS   TTEEEEEESS  SSH:    
ExpBur          :--ebbeebebebbbbbbeeeeebeebbeeb---------eeeebebbbbbeebebeebbeebebbeeeeeebbbbbebbbbbbebeebbbbbbbbbbeeb:    
Contact         :                                                                                   b                

queryA       597:QNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :  * ** ** **    ***** *      :
5sup_A_1     332:DQYLHRVGRAGRFGTKGLAISFVSSKEDE: 360
SecStr          :HHHHHHHTTSSGGG  EEEEEEE SHHHH:    
ExpBur          :bbbbbbbbbbbbeeeebbbbbbbbeeebe:    
Contact         :           bb

Protein Model on 5sup_A_1_J_1 (TEMPLATE: 5sup )

Input Residue Numbers for Focused Sites