[pdbjlvh2]Protein Model on 8enk_A_1_G

Protein Model on 8enk_A_1_G_1 (TEMPLATE: 8enk )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [379 aa]	Spliceosome RNA helicase DDX39B :DX39B_HUMAN
2	b		G 1 (A)	non-polymer(BEF)	BERYLLIUM TRIFLUORIDE ION	49G 52K 371E 408A 578G 605R 608R (identity: 100.0 %/33.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8enk_A_1 identity=33.8%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*      **   *        *   * * **    * ***  *  * ***  *     *                                         :
8enk_A_1       9:FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ-----------------------------------------:  67
SecStr          : GGG   HHHHHHHHHTT  S  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHH-----------------------------------------:    
ExpBur          :beebebeeebeebbeeeeeeebbebbeebbeebbeeebbbbbbebbbebebbbbbbbbb-----------------------------------------:    
Contact         :                                             b  b                                                   

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8enk_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK----------ALIVE: 293
                :                                                                                                *   :
8enk_A_1      68:-------------------------------------------------------------------------------------QLEPVTGQVSVLVMC:  82
SecStr          :-------------------------------------------------------------------------------------H    TTS  EEEE :    
ExpBur          :-------------------------------------------------------------------------------------bbeeeeebbbbbbbb:    

queryA       294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP: 392
                :  **** *       * **  * *       **        **  *   ********   *     ***       *** *  * *       *    * :
8enk_A_1      83:HTRELAFQISKEYERFSKYMPNVKVA--VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIF: 177
SecStr          :SSHHHHHHHHHHHHHHTTT TT  EE--EE TTS HHHHHHHHHHS  SEEEE HHHHHHHHHTTSS  TT  EEEEESHHHHHHSHH---HHHHHHHHH:    
ExpBur          :bbbbbbbbbbebbeebbebbeebeeb--ebbbeeeeeebeeebeeeebbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeee---beeebeebe:    
Contact         :                                                                              b                     

queryA       393:QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE: 487
                :  *   *  **   **** *        * *  *       *     * *      *    * *   *   *        **                  :
8enk_A_1     178:RMTPHEK--QVMMFSATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL--------DVL-----------------: 247
SecStr          :HTS SSS--EEEEEES  - TTTHHHHHTT SS EEE    GGGG--S TTEEEEEEE  HHHHHHHHHHHH--------HHS-----------------:    
ExpBur          :eebeeeb--bbbbbbbbb-beebbebbeebbeebbebebeeeeeb--bbeebebbebebeeeebeeebbebb--------eeb-----------------:    
Contact         :               b                                                                                    

queryA       488:AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV: 587
                :                    *  **      *  * *    *          *     *      **      **    * *  *    ** **  *   :
8enk_A_1     248:-----------------EFNQVVIFVKSVQRCIALAQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA: 321
SecStr          :-----------------  SEEEEE SSHHHHHHHHHHHHHTT---------  EEEE TTS HHHHHHHHHHHHTTS SEEEE GGGSSS   TTEEEE:    
ExpBur          :-----------------ebebbbbbbeeeeebeebbeebeeee---------bebbbbbeebebeebbeebebbeeeeeebbbbbebbbbbbebeebbbb:    
Contact         :                                                                                          b         

queryA       588:INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE: 624
                : *   *     * **  * **    ****  *  *  :
8enk_A_1     322:FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND: 358
SecStr          :EESS  SSHHHHHHHHTTSSGGG  EEEEEEE SHHH:    
ExpBur          :bbbbbbeeebbbbbbbbbbbbeeeebbbbbbbeeeeb:    
Contact         :                 b  b

Protein Model on 8enk_A_1_G_1 (TEMPLATE: 8enk )

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