[pdbjlvh2]Protein Model on 6l5m_A_1_F

Protein Model on 6l5m_A_1_F_1 (TEMPLATE: 6l5m )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [366 aa]	Nucleolar RNA helicase 2 :DDX21_HUMAN
2	b		F 1 (A)	non-polymer(AMP)	ADENOSINE MONOPHOSPHATE	20M(V) 22W(F) 23L 24L(F) 29Q 49G 50S(T) 51G 52K 53T 54G(F) (identity: 54.5 %/33.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6l5m_A_1 identity=33.7%

queryA        20:MDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEW: 119
                :   * *  ***        * *    * ** ***  * ** *      * *   *                                             :
6l5m_A_1      20:VTFLFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGR--------------------------------------------:  73
SecStr          : SS  H--HHHHHHHHHHTT  EEE   TTS TTHHHHHHHHHHHHTT     TT --------------------------------------------:    
ExpBur          :beebee--bbeebbeebeeeebbbbbbeeebebbbbbbbbbbbebbeeeeeeeeeb--------------------------------------------:    
Contact         :b bbb    b                   bbbbbb                                                                 

queryA       120:HGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIP: 219
                :                                                                                                    :
6l5m_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       220:PHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLR: 319
                :                                                                  **  *   * **** *         *     ** :
6l5m_A_1      73:-----------------------------------------------------------------RAPQVLVLAPTRELANQVSKDFSDITK-----KLS: 102
SecStr          :-----------------------------------------------------------------   SEEEE SSHHHHHHHHHHHHHH S-----SS :    
ExpBur          :-----------------------------------------------------------------bbbebbbbbbbeeebeebbebbeebbe-----ebb:    

queryA       320:ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH-SFDVKKL: 418
                :     **     *     ** ** ******  *    *** *      **** *  *  *  *             *              *  * * * :
6l5m_A_1     103:VACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKK: 202
SecStr          :EEEE SSS HHHHHHHHHH  SEEEE HHHHHHHHHTS    SS SEEEE SHHHHHHTT HHHHHHHHHHH  TT TTS EEEEE SS  HHHHHHHHH:    
ExpBur          :bbbbeeeeeeeebeeebeebbbbbbbbbebbeebbeeeebebeebebbbbbebbebeeeebbeebeebbeebbeeeeeebbbbbbbbeebeebbeebbee:    

queryA       419:SEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKID: 518
                :  *                  ** *                 * *                     *             *    *     **** **  :
6l5m_A_1     203:YMKSTYEQVDLXXXXXXXXXXTVEHLAI--------------KCH---------------------WTQRAAVIGD--VIRVYSGHQ-GRTIIFCETKKE: 264
SecStr          :TS SS EEE  ---------- EEEEEE--------------E  ---------------------TTTHHHHHHH--HHHHHT TT-  EEEE SSHHH:    
ExpBur          :bbeeeeeebee----------ebebbbb--------------ebe---------------------eeebbeebee--bbeeebeee-bbbbbbbeeeeb:    

queryA       519:CDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISL: 618
                :   * *          *   *     ****     *   *  *  *    *  * ***** **  *  **    *     * ** ** *** * *  *  :
6l5m_A_1     265:AQELSQ------NSAIKQDAQ----SLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICF: 354
SecStr          :HHHHHT------STTTGGGEE----EESTTS HHHHHHHHHHHHHTS SEEEE SSTTTTS    BSEEEESS  S HHHHHHHHTTB  TT  EEEEEE:    
ExpBur          :beebbe------eeebeeebe----bbbeebeeeeeeebbebbeeeebbbbbbbbebbeeeebbebbbbbbbbbbeebebbeebbeebbeeeeebbbbbb:    

queryA       619:VATEKE: 624
                :     *:
6l5m_A_1     355:YQHKEE: 360
SecStr          :E GGGH:    
ExpBur          :bbeebe:

Protein Model on 6l5m_A_1_F_1 (TEMPLATE: 6l5m )

Input Residue Numbers for Focused Sites