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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [382 aa] | Eukaryotic initiation factor 4A-III, N-terminally processed :IF4A3_HUMAN | |
2 | b | E 1 (E) | polymer(polyribonucleotide) | RNA | 294P 295S(T) 296R 325G 326G 329A(V) 346T 348G 349R 352D 355S(R) 380Y(F) 383F(Q) 514R(N) 515T 516K 546H 547G 554R 572T 573D 574V 594D(N) (identity: 69.6 %/33.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7znj_A_1 identity=33.7% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102 : * ** * ** * * * ** * *** *** * * * : 7znj_A_1 17:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ------------------------------: 86 SecStr :SGGGS HHHHHHHHHHT S TTHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHS SS S ------------------------------: ExpBur :ebeebebeeebbebbeeeeeeebbebbeebbebbeeeebbbbbbebbbebebbbbbbbbbebeeeeeebb------------------------------: queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202 : : 7znj_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT: 302 : *** * **** * : 7znj_A_1 86:-------------------------------------------------------------------------------------QALILAPTRELAVQI: 100 SecStr :------------------------------------------------------------------------------------- EEEE SSHHHHHHH: ExpBur :-------------------------------------------------------------------------------------bbbbbbbbebbbebb: Contact : bbb queryA 303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402 : * *** * * * ***** * * ******* * * * * * *: 7znj_A_1 101:QKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------Q: 191 SecStr :HHHHHHHTTTTT--- EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHTT S TT EEEEETHHHHTSTTTHHHHHHHHHTS TT ------E: ExpBur :bebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebeeebeebeeebeeeb------b: Contact : bb b b bb b b b b queryA 403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK: 502 :* **** * * * * * * ** * * * * * : 7znj_A_1 192:VVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLCDLYDTLTIT: 256 SecStr :EEEEES - HHHHHHGGGT SS EEE TTS S TTEEEEEEE --------SS------------------------GGGH--HHHHHHTHHHHSSS: ExpBur :bbbbbbbb-eeebbebbeebbeebbebbbeeeebbeebbebbbbeb--------ee------------------------eeeb--bebbbebbeebeee: queryA 503:EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR: 602 : ** *** ** * * * *** ** * * * ** *** *** * * ** ** * **: 7znj_A_1 257:-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR: 342 SecStr :-----EEEEE SSHHHHHHHHHHH---------HHTT EE TTS HHHHHHHHHHHHTTSS EEEE TTSTTT TTEEEEEESS SSHHHHHHH: ExpBur :-----bbbbbbeeeebbeebbeeb---------eeeeeebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebebbbbbbbbeeebbbbbb: Contact : bbb bb b bbb b queryA 603:IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645 :*** ** * * ** * * * *: 7znj_A_1 343:IGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 380 SecStr :HTTSSTTS EEEEEEE TTTHHHHHHH-----HHHTT EE: ExpBur :bbbbbbeeeebebbbbbeeeeeeebeeb-----beebebebee: |