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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [379 aa] | Spliceosome RNA helicase DDX39B :DX39B_HUMAN | |
2 | b | D 1 (M) | polymer(polyribonucleotide) | RNA | 294P(H) 295S(T) 296R 324I(F) 325G 326G 346T 347P 348G 349R 352D(A) 380Y(D) 384I(M) 514R(K) 515T(S) 516K(V) 546H 547G(R) 554R 572T 573D(N) 574V(L) (identity: 45.5 %/33.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8enk_A_1 identity=33.8% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* ** * * * * ** * *** * * *** * * : 8enk_A_1 9:FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ-----------------------------------------: 67 SecStr : GGG HHHHHHHHHTT S HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebeebbeeeeeeebbebbeebbeebbeeebbbbbbebbbebebbbbbbbbb-----------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 8enk_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK----------ALIVE: 293 : * : 8enk_A_1 68:-------------------------------------------------------------------------------------QLEPVTGQVSVLVMC: 82 SecStr :-------------------------------------------------------------------------------------H TTS EEEE : ExpBur :-------------------------------------------------------------------------------------bbeeeeebbbbbbbb: queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP: 392 : **** * * ** * * ** ** * ******** * *** *** * * * * * : 8enk_A_1 83:HTRELAFQISKEYERFSKYMPNVKVA--VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIF: 177 SecStr :SSHHHHHHHHHHHHHHTTT TT EE--EE TTS HHHHHHHHHHS SEEEE HHHHHHHHHTTSS TT EEEEESHHHHHHSHH---HHHHHHHHH: ExpBur :bbbbbbbbbbebbeebbebbeebeeb--ebbbeeeeeebeeebeeeebbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeee---beeebeebe: Contact :bbb bbb bbbb b b b queryA 393:QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSE: 487 : * * ** **** * * * * * * * * * * * * ** : 8enk_A_1 178:RMTPHEK--QVMMFSATL-SKEIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLKDNEKNRKLFDLL--------DVL-----------------: 247 SecStr :HTS SSS--EEEEEES - TTTHHHHHTT SS EEE GGGG--S TTEEEEEEE HHHHHHHHHHHH--------HHS-----------------: ExpBur :eebeeeb--bbbbbbbbb-beebbebbeebbeebbebebeeeeeb--bbeebebbebebeeeebeeebbebb--------eeb-----------------: queryA 488:AIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV: 587 : * ** * * * * * * ** ** * * * ** ** * : 8enk_A_1 248:-----------------EFNQVVIFVKSVQRCIALAQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA: 321 SecStr :----------------- SEEEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHTTS SEEEE GGGSSS TTEEEE: ExpBur :-----------------ebebbbbbbeeeeebeebbeebeeee---------bebbbbbeebebeebbeebebbeeeeeebbbbbebbbbbbebeebbbb: Contact : bbb bb b bbb queryA 588:INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE: 624 : * * * ** * ** **** * * : 8enk_A_1 322:FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND: 358 SecStr :EESS SSHHHHHHHHTTSSGGG EEEEEEE SHHH: ExpBur :bbbbbbeeebbbbbbbbbbbbeeeebbbbbbbeeeeb: |