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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [404 aa] | Prp28 :G0SBQ7_CHATD | |
2 | b | C 1 (A) | non-polymer(MG) | MAGNESIUM ION | 50S 51G 52K 53T (identity: 100.0 %/29.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5dtu_A_1 identity=29.7% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 :* * * * ** ** ** * * * ****** ** * * : 5dtu_A_1 41:MRNWEESGLPRRLLDIVYRVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISE----------------------------------: 106 SecStr : S GGGSSS HHHHHHHHHTT S HHHHHHHHHHSSS EEE TTSSHHHHHHHHHHHHH ----------------------------------: ExpBur :beebeebebeeebbebbeeeeeeebeebbbbbbbbbeeebbbbbbbeeebebebbbbbbbbeebee----------------------------------: Contact : bbbb queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 5dtu_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP----------NAPKAL: 290 : * **: 5dtu_A_1 107:------------------------------------------------------------------------------------XXXXXEYNKNDGPYAL: 122 SecStr :----------------------------------------------------------------------------------------- SS S SEE: ExpBur :-----------------------------------------------------------------------------------------eeeeeebbebb: queryA 291:IVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQ: 390 :* * *** * * * * ** * * ** * * ***** * * ** **** ** : 5dtu_A_1 123:ILAPTRELVQQIES---EARKFADPLGFTVVSIVGGHSLEEQAFALRNGAEIIVATPGRLVDCIERRLLVFSQCCYVIMDEADRMIDQGFEEPLTKILDA: 219 SecStr :EE SSHHHHHHHHH---HHHHHHGGGT EEEE SSS HHHHTT TT SEEEE HHHHTTTTTTTSS SS EEEEETHHHHHTTT HHHHHH : ExpBur :bbbbeeebbeebee---ebeebbeebebebbbbbbeeeeeeeeeeeebbbbbbbbbbeebbebbeeeeeebeebebebbbbbbebbeeebeebbeebeee: queryA 391:IPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIK: 490 : * * ** * * * * * : 5dtu_A_1 220:LXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTMMYTA--------TMPPTV---------------EKIAKKYLRRPAIVTIGNXXXXXXTVE---QRVE: 293 SecStr : ---------------------------- EEEEEES-------- HHH---------------HHHHHTT SS EEEE ------ ---B E: ExpBur :e----------------------------ebbbbbbe--------eeeeeb---------------eebbeeebeeebbbbbee------eeb---ebbb: queryA 491:ILKGEYAVRAIKEHKMDQA------IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV: 584 : ** * * * * * * ** * *** * * * * ** * **** *: 5dtu_A_1 294:FIAGEDKRKRRLQEILNSGQFKPPIIVFVNIKRNCEMVAK---------DIKSWGFSTVTLHGSKTQEQREASLAALRNGQAHILVATDLAGRGIDVPDV: 384 SecStr :EE SSSHHHHHHHHHHHT S S EEEE S HHHHHHHHH---------HHHHTT EEE TTS HHHHHHHHHHHHTTS EEEE TTTTSS TT : ExpBur :eeeeeeebeeebeebbeeeebeebbbbbbeeeebbeebbe---------ebeeeeeebbebeeeeeeeebeebbeebeeeebebbbbbeebbeebebeeb: queryA 585:PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630 : * * * * ***** *** * ** * * * : 5dtu_A_1 385:SLVVNFNMPSTIEAYTHRIGRTGRAGKSGVAITFLGNEDADVMYDL: 430 SecStr :SEEEESS SSHHHHHHHHTSS SSS EEEEEE GGGHHHHHHH: ExpBur :bbbbbbbbbeebebbeebbebbeeeebebbbbbbbbeebeebbeeb: |