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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | OA 1 (x) | polymer(polypeptide(L)) [374 aa] | Probable ATP-dependent RNA helicase DDX28 :DDX28_HUMAN | |
2 | b | QA 1 (z) | polymer(polypeptide(L)) [253 aa] | rRNA methyltransferase 3, mitochondrial :MRM3_HUMAN | 490K(H) 529Q(D) 538H (identity: 33.3 %/34.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7oi6_OA_1 identity=34.1% |
queryA 3:AFSEMGVMPEIAQAVEEM--DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * * * * ** * ** * * * ********* : 7oi6_OA_1 127:SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSY--------------------------------------------: 182 SecStr : GGGT HHHHHHHHHTTTS SS HHHHHHHHHHHTT EEEE TTSSHHHHH--------------------------------------------: ExpBur :eeeeeeeeebeeeeeeeeeeeeeeeeeebeebbeebeeeeeeeeebeeeeebeebb--------------------------------------------: queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 7oi6_OA_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN---------------: 285 : : 7oi6_OA_1 183:-------------------------------------------------------------------------------------LLPLLQRLLGQPSLD: 197 SecStr :-------------------------------------------------------------------------------------HHHHHHHHHTS GGG: ExpBur :-------------------------------------------------------------------------------------eebeeeeeeeeeeee: queryA 286:-----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII--------GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA: 372 : ** * ****** * * * * * * *** * * *** * * * *******: 7oi6_OA_1 198:SLPIPAPRGLVLVPSRELAQQV--------RAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLS-RQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEA: 288 SecStr :G SS SEEEE SSHHHHHHH--------HHHHHHHTTSSS EEEE TTS HHHHT TTT-TSS SEEEE HHHHHHHHHTTSS STT EEEEETH: ExpBur :eeeeebbbeeeebeeeeebeee--------beeeeeeeeeeeeeebebbeeeeeeeeebeee-beebeeebbebeeeebebeeeeeeeeebbebeebeee: queryA 373:DGLLSQGYSDFINRMHNQIPQVTSD-------GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV-DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI: 464 :* ** * ** ** * * ** * * : 7oi6_OA_1 289:DTLLDESFLELVDYILXXXXXXXXXXXXXXXFNPKAQLVLVGAT---------------FPEGVGQLLNKVASPDAVTTIT---SSKLHCIMPHVKQTFL: 370 SecStr :HHHTSHHHHHHHHHH --------------- TTSEEEEEES --------------- HHHHHHHGGG SS EEEE S--- SS S TT B : ExpBur :eebeeeebeebeeeee---------------eeeeebeebeeee---------------eeeeeeeeeeeeeeeeeeeebe---eeeeeeeeeeeeeeee: queryA 465:RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG: 564 :* ** * *** ** ** * * * * * * * * : 7oi6_OA_1 371:RLK----------GADK---VAELVHILK--HRDRAERTGPSGTVLVFCNSS-STVNWLGYILDD--------HKIQHLRLQGQMPALMRVGIFQSFQKS: 446 SecStr : S ----------STTH---HHHHHHHHH--HHHHHHHSSS EEEEE S H-HHHHHHHHHHHH--------TT EEEE TTS HHHHHHHHHHHHTT: ExpBur :eee----------eeeb---eeeeeeeee--ebeeeeeeeeeebeebbbeee-eebeeeeeebee--------eeeeebebbeebeeeebeebeeeeeee: Contact : b b b queryA 565:DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR--AERMGLAISLV: 619 : * *** * ** * ** * * * * * ** ***** * * ** *: 7oi6_OA_1 447:SRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFV: 503 SecStr : SEEEE GGGSS TTEEEEEESS SSHHHHHHHHHHSSTT SSS EEEE : ExpBur :ebebbbbbeeeeeeeeeeebbbbebebbeeeeeebebbeebbebeeeeeeeeeeebe: |