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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | KA 1 (4A) | polymer(polypeptide(L)) [342 aa] | Eukaryotic initiation factor 4A-I :IF4A1_HUMAN | |
2 | b | LA 1 (CD) | polymer(polypeptide(L)) [347 aa] | Programmed cell death protein 4 :PDCD4_HUMAN | 348G 349R 378Q(R) 379G 409T 410L(M) 514R(N) 594D(T) 595E(N) 596K(R) 638C(F) (identity: 36.4 %/32.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8xxn_KA_1 identity=32.7% |
queryA 249:FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP: 347 : * * * * * * * ** * **** * * *** * * * ****: 8xxn_KA_1 64:LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTP: 159 SecStr :S SS EEEE TT-TTTSHHHHHHHHTT TT S EEEE S HHHHHHHHHHHHHHHTTTT EEE--- STTHHHHHHHHHHT SEEEE H: ExpBur :eeeeeeebeeeeeeee-eeeeeeebbeeeeeeeeeeeebbeeebbeeeeebeebbebeeeebeeeeeeeee---eeeeeeeeeeeeeeeeeeebbebbeb: queryA 348:GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP: 447 :** * * ****** ** * * * * ** *** * ** * * * * * : 8xxn_KA_1 160:GRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN: 252 SecStr :HHHHHHHHTTSS SS EEEEE HHHHHHHT HHHHHHHHHHS TT ------EEEEEES H-HHHHHHHHH SS EEEEE BSTTEEEEEEE: ExpBur :ebebebeeeebeeeeebeebeeebbebbeeeebeebeeeeeeebeeeb------beeeebeeeee-ebeeeeeeeeeeeebeeeeeeeeeeeebeebbee: Contact :bb bb bb queryA 448:VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG: 547 :* ** * * * * * ** ** * * * * * : 8xxn_KA_1 253:V--------ER------------------------EEWK--LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHX: 304 SecStr : -------- S------------------------HHHH--HHHHHHHHHHHT S-----SEEEEES HHHHHHHHHHH---------HHTT S EE -: ExpBur :b--------ee------------------------eebe--eeeeeeeeeeeeee-----eeeebeeeeeebeeeeeeb---------eeeeeeeeeee-: Contact : b queryA 548:DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645 : * * * * ** ** ***** * *** ** ** ***** ** * ** * * *** *: 8xxn_KA_1 305:XXXXXXRDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGXKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE: 397 SecStr :------ HHHHHHHHSSSS EEEEEHHHHHHS TT SEEEESS S HHHHHHHH B SS - EEEEEEE HHHHHHHHHH-----HHHHT EEE: ExpBur :------eeeeeeeeeeeeeeeebbeeeeeeeeeeeeeebeebeeeeeeeebbeeeeebeeeee-eeebeeebeeebeeeeeee-----beeeeeeeee: Contact : bbb b |