[pdbjlvh2]Protein Model on 8v84_J_1_A

Protein Model on 8v84_J_1_A_1 (TEMPLATE: 8v84 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	J 1 (D)	polymer(polypeptide(L)) [423 aa]	ATP-dependent RNA helicase HAS1 :HAS1_YEAST
2	b		A 1 (1)	polymer(polyribonucleotide)	Saccharomyces cerevisiae 25S ribosomal RNA	328A(N) 330R 331D(Q) 334S(E) 335V(K) (identity: 20.0 %/37.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8v84_J_1 identity=37.4%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :* *         * * *     *  **  **  * * *** ** ****** ** ** *                                          :
8v84_J_1      44:FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLH--------------------------------------: 105
SecStr          :TTTS   HHHHHHHHHHT  B  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHHHHHH--------------------------------------:    
ExpBur          :beebebbebbeebbeebeeeebeebbeebbebbeeeebbbbbbebeeebbbbbbbbbbbebe--------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8v84_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT---KFLP-NAPKALIVEPSRELA: 299
                :                                                                                ** * *        * ****:
8v84_J_1     106:-----------------------------------------------------------------------------SL-KFKPRNGTGIIVITPTRELA: 127
SecStr          :-----------------------------------------------------------------------------HH-T  GGG   EEEE SSHHHH:    
ExpBur          :-----------------------------------------------------------------------------ee-ebeeeebbbbbbbbbbbbbb:    

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG: 398
                : *                      ***   *     *  **     **** ** *  *          *  ****  *  *  *         *      :
8v84_J_1     128:LQIFGVARELMEFHSQ---TFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILP------: 218
SecStr          :HHHHHHHHHHGGGSSS--- EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHH SS   TT  EEEE  HHHHHHHT HHHHHHHHHHS ------:    
ExpBur          :ebbbbbbebbbeebeb---eebbbbbeeeeeebbeebeebbbbbbbbbebbbebbeebeebebeebebbbbbbbbbbbeeeeeeebeebbeebe------:    
Contact         :                            b bb  bb                                                                

queryA       399:KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV: 498
                :                                                                                                    :
8v84_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       499:RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC------------------------------------------------------: 544
                :                                                                                                    :
8v84_J_1     219:----------------------------------------------NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVXXXXXXXXXXXXXQGYVVCD: 272
SecStr          :---------------------------------------------- SS EEEEEESS  HHHHHHHHHHS SS EEEE ------------- EEEE  :    
ExpBur          :----------------------------------------------eeebbbbbbbeeeeeebeebbeebbeeeeeebee-------------ebbbebe:    

queryA       545:-----------------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ: 597
                :                                               ***  *   *      *       ********** **  *   *    **   :
8v84_J_1     273:SDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLE-LHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPR: 371
SecStr          :STTHHHHHHHHHHHTTTSEEEEEES HHHHHHHHHHHHHTT   EE-E TTS HHHHHHHHHHHHH SSEEEEEEHHHHSS      SEEEE S  S HH:    
ExpBur          :bbebbbbbbbbbeeeeeebbbbbbbbbbbbebbbebbeeeebebeb-bbbebebeebeebbeebeeeeeebbbbbbbbbbeeebeebebebbbbbbbbbe:    

queryA       598:NYV: 600
                : * :
8v84_J_1     372:DYI: 374
SecStr          :HH :    
ExpBur          :eee:

Protein Model on 8v84_J_1_A_1 (TEMPLATE: 8v84 )

Input Residue Numbers for Focused Sites