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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [443 aa] | ATP-dependent RNA helicase DBP2 :DBP2_YEAST | |
2 | b | F 1 (F) | polymer(polypeptide(L)) [443 aa] | ATP-dependent RNA helicase DBP2 :DBP2_YEAST | 456W(N) 527I(R) 528Q(E) 529Q(D) 530G 541S(P) 542C(A) 543V(L) 560R(E) 565D(R) 566V(S) (identity: 9.1 %/38.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8arp_A_1 identity=38.5% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * * * ** ** * * * * * ****** * * : 8arp_A_1 112:ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGI---------------------------------------: 172 SecStr : SGGGS HHHHHHHHHHT S HHHHHHHHHHTBT EEEE TTSSHHHHHHHHHH---------------------------------------: ExpBur :beebebbbbeeebbebbeeeeeeebebbbbbbbbbbbbbbbbbbbbebeebbbbbbbbbbb---------------------------------------: queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 8arp_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------------NAPK: 288 : * : 8arp_A_1 173:------------------------------------------------------------------------------------VHINAQPLLAPGDGPI: 188 SecStr :------------------------------------------------------------------------------------HHHTTS SS S: ExpBur :------------------------------------------------------------------------------------bbbeebeebeeeebbb: queryA 289:ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMH: 388 : * * **** * * * *** * * * ** ***** * ** ** * ******* * * * : 8arp_A_1 189:VLVLAPTRELAVQIQTECSKFGH---SSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIV: 285 SecStr :EEEE SSHHHHHHHHHHHTTSST---TTT EEEE SSS SHHHHHHHTT SEEEE HHHHHHHHHTTS SS EEEE HHHHHHTT HHHHHHHG: ExpBur :bbbbbbebbbbbbbebebeebbe---ebebebbbbbeebeeeebeeebeebbbbbbbbbebbbebeeeeeeebebbbbbbbbbbbbbeeeebeeebeebb: queryA 389:NQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVN--PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW: 485 : ** * *** ** * * * * * * * * *** * ** : 8arp_A_1 286:DQI------RPDRQTLMWSATWPK-EVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL--------ETASQDN-----------: 359 SecStr :GGS------ TT EEEEEES H-HHHHHHHHH SS EEEE S TTSEEEEEE TTTHHHHHHHHH--------HHHTTSS-----------: ExpBur :bbb------beebbbbbbbbbeee-ebeebbeebbeeebebebeeeeeebeeebebebbebeeeebeeebbeeb--------eebeeee-----------: Contact : b queryA 486:SEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP: 585 : ** ** ** ** * * *** ** * * * ********* * : 8arp_A_1 360:---------EY-----------KTLIFASTKRMCDDITKYLREDG---------WPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGIN: 430 SecStr :---------S ----------- EEEE SSHHHHHHHHHHHHHHT--------- EE SSS SSHHHHHHHHHHTTSSSEEEE TTTTTT : ExpBur :---------eb-----------bbbbbbeebeebeebbeebeeee---------bebebbbbeebeeebeebbeebeeeebbbbbbbbbbbeebebeebe: Contact : bbbb bbb b bb queryA 586:YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625 :**** * ******* *** * *** ** *: 8arp_A_1 431:YVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF-TEQNK: 469 SecStr : EEESS SSHHHHHHHHTTS SSS EEEEEE- GGGH: ExpBur :ebbbbbbbebbbbbbebbebbeeeeeebebbbbb-beebe: |