#WARNING:no index is registered index "YP_009725309.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725309.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [512 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | |
2 | b | L 1 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | 209L 210C (identity: 100.0 %/92.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5nfy_A_1 identity=92.7% |
queryA 3:NVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREAVG: 102 :*********** **************** ******************************************************************* ***: 5nfy_A_1 10:NVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDAVG: 109 SecStr : STT B B S TTTT SSGGGS GGGEETTEE TTS S EEEE TT SB HHHHHHT SSEEEEEEEEEEE SSB S: ExpBur :eeeeeeeebbeeeebbbeebbeeeeebbeebeeeeeeeeeeeeeeeeebebbbbbeeeeeeeeeeeeeebebeeeebbeebbbbbbbbbbbbebbeebee: queryA 103:TNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVKIG: 202 :************************* *** * ** ************************************** **************************: 5nfy_A_1 110:TNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVKIG: 209 SecStr : EEEEEEEESSS EEEB EEEEEESSSEEEEE EE SSSTTGGGSGGGSS B HHHHHHHHHHHHHHHHTTT SS EEEESSHHHHHHHHTTTB : ExpBur :bebbbbbbbebeeebbbbbbbbbebeeeeeeeebebeebeeeeeeebeebbeeeeebeebbeebbebbbeebeebeebbbbbbbeeebbbbbbebbbeeb: queryA 203:PERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIGDE: 302 :********* ******* ******* ** *************************** ******************************** ********: 5nfy_A_1 210:PERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDE: 309 SecStr :S B SSS SB EEETTTTEEE TTT SS EE S EEEESGGGT SS HHHHHHTT SSS SSHHHHHHHHHHHHHHTTTTS TT SS : ExpBur :eeeebeebeebbbbbbeeeeebbbbeebeebbbbbbbbbbbbeeeeeeeebeebbeeebeeeeeeeebbbebebbbbbbbbbbbeeebeeebebeeeeeb: Contact : bb queryA 303:LKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCRFD: 402 :* * *********** ************************* ************************** * ********************* ******: 5nfy_A_1 310:LRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYAIHHDKFTDGVCLFWNCNVDRYPANAIVCRFD: 409 SecStr :HHHHHHHHHHHHHHHHHHHHHS SEEEEET SS SSTT SEEEEEESS STT TTEEE HHHHTTT SSEEEEES SS SSEEEEEE : ExpBur :eebbebbeebbebbbebbbebeebebbbbbebbebeebbeeeebebebbbeebeeeeeeebeebebbeeebeeebeebbbbbbebebeebbebbbbbbbb: queryA 403:TRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNMMI: 502 :********************************** **************** **************************** *********: 5nfy_A_1 410:TRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCEXXXXXXXXXXXYVPLKSATCITRCNLGGAVCRHHANEYRQYLDAYNMMI: 509 SecStr :TT SSSEEE STT EEEESSSEEEE GGGGTT EE EEE S ----------- SSEEESS SSS HHHHHHHHHHHHHHHHHH: ExpBur :beeeeebbbebbeebbbbbbebbebbeebeeebbeebeebebbbbbeeeee-----------eeeeeeeebbbebbeeeeebeebbeebeebeebbeebe: queryA 503:SAGFSLWVYKQFDTYNLWNTFTR: 525 :******* ***************: 5nfy_A_1 510:SAGFSLWIYKQFDTYNLWNTFTR: 532 SecStr :HTTEEEEE TT THHHHTTT : ExpBur :eebbbbbbbeebeeeebbeebee: |