PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= YP_009725308.1 helicase [Severe acute respiratory syndrome
coronavirus 2]
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 1259 0.0
sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 1258 0.0
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 1255 0.0
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 1251 0.0
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 1249 0.0
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 973 0.0
sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 923 0.0
sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 923 0.0
sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 918 0.0
sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 917 0.0
sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 878 0.0
sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 878 0.0
sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 878 0.0
sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 877 0.0
sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 875 0.0
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 866 0.0
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 865 0.0
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 847 0.0
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 845 0.0
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 845 0.0
sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 845 0.0
sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 786 0.0
sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 781 0.0
sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 767 0.0
sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 766 0.0
sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 762 0.0
sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 761 0.0
sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 742 0.0
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 740 0.0
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 740 0.0
sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis ... 57.8 2e-07
sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX... 51.6 3e-05
sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir... 50.4 6e-05
sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nucle... 50.1 7e-05
sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (... 48.9 1e-04
sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis th... 47.8 3e-04
sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus... 45.1 0.002
sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11... 45.4 0.002
sp|A0A1P8ASY1|JHS1_ARATH DNA replication ATP-dependent helicase/n... 43.5 0.007
sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog... 42.7 0.010
sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyoste... 42.0 0.020
sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens ... 42.0 0.023
sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ010... 41.2 0.025
sp|Q9BYK8|HELZ2_HUMAN 3'-5' exoribonuclease HELZ2 OS=Homo sapiens... 41.6 0.027
sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens... 41.2 0.036
sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 O... 40.8 0.039
sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus ... 40.8 0.043
sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C1... 40.8 0.049
sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog... 40.0 0.072
sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus OX=9... 40.0 0.075
sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccha... 40.0 0.076
sp|E9P860|ZNFX1_CAEEL NFX1-type zinc finger-containing protein 1 ... 40.0 0.077
sp|Q0VGT4|ZGRF1_MOUSE 5'-3' DNA helicase ZGRF1 OS=Mus musculus OX... 39.7 0.093
sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caen... 38.9 0.16
sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nucle... 38.5 0.20
sp|P30771|RENT1_YEAST ATP-dependent helicase NAM7 OS=Saccharomyce... 38.5 0.21
sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (s... 38.5 0.25
sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts ... 38.1 0.26
sp|Q9HCE1|MOV10_HUMAN Helicase MOV-10 OS=Homo sapiens OX=9606 GN=... 38.1 0.30
sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dict... 37.7 0.35
sp|E9QAM5|HELZ2_MOUSE 3'-5' exoribonuclease HELZ2 OS=Mus musculus... 37.7 0.41
sp|A0A339|NDHK_COFAR NAD(P)H-quinone oxidoreductase subunit K, ch... 36.2 0.55
sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase... 37.0 0.58
sp|O60306|AQR_HUMAN RNA helicase aquarius OS=Homo sapiens OX=9606... 36.6 0.91
sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase... 36.2 0.96
sp|Q8CFQ3|AQR_MOUSE RNA helicase aquarius OS=Mus musculus OX=1009... 36.2 1.0
sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A1... 36.2 1.0
sp|Q86YA3|ZGRF1_HUMAN 5'-3' DNA helicase ZGRF1 OS=Homo sapiens OX... 36.2 1.2
sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reprodu... 35.8 1.5
sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus OX... 35.8 1.5
sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog... 35.8 1.6
sp|P55500|Y4IQ_SINFN Putative insertion sequence ATP-binding prot... 34.7 2.0
sp|J8HQ06|GAJB_BACC6 Gabija protein GajB OS=Bacillus cereus (stra... 35.0 2.4
sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nucle... 35.0 2.6
sp|F1RCY6|RENT1_DANRE Regulator of nonsense transcripts 1 OS=Dani... 35.0 2.7
sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo... 35.0 2.9
sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus ... 34.7 2.9
sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reprodu... 34.7 3.4
sp|P04867|TGB1_BSMV Movement protein TGB1 OS=Barley stripe mosaic... 34.3 4.0
sp|Q57749|DHPSL_METJA 7,8-dihydropterin-6-methyl-4-(beta-D-ribofu... 33.9 4.2
sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heteroch... 34.3 4.4
sp|P47386|Y140_MYCGE Uncharacterized ATP-dependent helicase MG140... 34.3 4.7
sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprodu... 34.3 5.3
sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reprodu... 34.3 5.3
sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reprodu... 33.9 6.3
sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reprodu... 33.9 6.4
sp|Q923J6|DYH12_RAT Dynein axonemal heavy chain 12 OS=Rattus norv... 33.5 7.4
sp|B7PDC5|GATA_IXOSC Glutamyl-tRNA(Gln) amidotransferase subunit ... 33.1 8.3
sp|Q6D7R8|HDA_PECAS DnaA regulatory inactivator Hda OS=Pectobacte... 32.7 8.4
>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1
SV=1
Length=7096
Score = 1259 bits (3258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/601 (100%), Positives = 601/601 (100%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV
Sbjct 5325 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5384
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY
Sbjct 5385 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5444
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY
Sbjct 5445 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5504
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL
Sbjct 5505 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5564
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP
Sbjct 5565 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5624
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV
Sbjct 5625 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5684
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE
Sbjct 5685 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5744
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI
Sbjct 5745 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 5804
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE
Sbjct 5805 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5864
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL
Sbjct 5865 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 5924
Query 601 Q 601
Q
Sbjct 5925 Q 5925
>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1
Length=7073
Score = 1258 bits (3254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/601 (99%), Positives = 601/601 (100%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV
Sbjct 5302 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5361
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY
Sbjct 5362 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5421
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY
Sbjct 5422 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5481
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL
Sbjct 5482 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5541
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP
Sbjct 5542 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5601
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV
Sbjct 5602 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5661
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE
Sbjct 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5721
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI
Sbjct 5722 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 5781
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE
Sbjct 5782 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5841
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YDYVIFTQTTETAHSCNVNRFNVAITRAK+GILCIMSDRDLYDKLQFTSLEIPRRNVATL
Sbjct 5842 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVATL 5901
Query 601 Q 601
Q
Sbjct 5902 Q 5902
>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus
Rp3/2004 OX=349344 GN=rep PE=3 SV=1
Length=7071
Score = 1255 bits (3248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/601 (99%), Positives = 601/601 (100%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV
Sbjct 5300 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5359
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY
Sbjct 5360 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5419
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY
Sbjct 5420 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5479
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLN+GDYFVLTSHTVMPLSAPTL
Sbjct 5480 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNIGDYFVLTSHTVMPLSAPTL 5539
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP
Sbjct 5540 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5599
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV
Sbjct 5600 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5659
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE
Sbjct 5660 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5719
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK+KSAQCFKMFYKGVI
Sbjct 5720 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGVI 5779
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE
Sbjct 5780 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5839
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YDYVIFTQTTETAHSCNVNRFNVAITRAK+GILCIMSDRDLYDKLQFTSLE+PRRNVATL
Sbjct 5840 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATL 5899
Query 601 Q 601
Q
Sbjct 5900 Q 5900
>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus
279/2005 OX=389167 GN=rep PE=3 SV=1
Length=7079
Score = 1251 bits (3238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/601 (99%), Positives = 600/601 (99%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV
Sbjct 5308 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5367
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYCK HKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY
Sbjct 5368 TQLYLGGMSYYCKLHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5427
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY
Sbjct 5428 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5487
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL
Sbjct 5488 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5547
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP
Sbjct 5548 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5607
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV
Sbjct 5608 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5667
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE
Sbjct 5668 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5727
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK+KSAQCFKMFYKGVI
Sbjct 5728 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGVI 5787
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE
Sbjct 5788 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5847
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YDYVIFTQTTETAHSCNVNRFNVAITRAK+GILCIMSDRDLYDKLQFTSLE+PRRNVATL
Sbjct 5848 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATL 5907
Query 601 Q 601
Q
Sbjct 5908 Q 5908
>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus
HKU3 OX=442736 GN=rep PE=3 SV=1
Length=7067
Score = 1249 bits (3231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/601 (99%), Positives = 601/601 (100%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV
Sbjct 5296 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5355
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY
Sbjct 5356 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5415
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDREL+LSWEVGKPRPPLNRNY
Sbjct 5416 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELYLSWEVGKPRPPLNRNY 5475
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL
Sbjct 5476 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5535
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQEHYVRITGLYPTLNIS+EFSSNVANYQK+GMQKYSTLQGPPGTGKSHFAIGLALYYP
Sbjct 5536 VPQEHYVRITGLYPTLNISNEFSSNVANYQKIGMQKYSTLQGPPGTGKSHFAIGLALYYP 5595
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV
Sbjct 5596 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5655
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE
Sbjct 5656 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5715
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK+KSAQCFKM+YKGVI
Sbjct 5716 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMYYKGVI 5775
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE
Sbjct 5776 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5835
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YDYVIFTQTTETAHSCNVNRFNVAITRAK+GILCIMSDRDLYDKLQFTSLE+PRRNVATL
Sbjct 5836 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATL 5895
Query 601 Q 601
Q
Sbjct 5896 Q 5896
>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus
HKU9 OX=694006 GN=rep PE=1 SV=1
Length=6930
Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/592 (75%), Positives = 518/592 (88%), Gaps = 0/592 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VG CV+CNSQTSLRCG CIRRPFLCCKCCYDHV+ST+HKLVLSV PYVCN P CDV DV
Sbjct 5166 SVGTCVVCNSQTSLRCGGCIRRPFLCCKCCYDHVVSTTHKLVLSVTPYVCNNPSCDVADV 5225
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYC+ H+PPISFPLCANGQVFGLYKN C GS +V DFN++ATCDW+N+ DY
Sbjct 5226 TQLYLGGMSYYCRDHRPPISFPLCANGQVFGLYKNICTGSPDVADFNSLATCDWSNSKDY 5285
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LANT TERLKLFAAETL+ATEE K +Y A V+EVLSDREL LSWE GK RPPLNRNY
Sbjct 5286 VLANTATERLKLFAAETLRATEENAKQAYASAVVKEVLSDRELVLSWETGKTRPPLNRNY 5345
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTG+ +TKNSKVQ+GEY FEKGDYGD V YR +TTYKL VGDYFVLTSH+V PLS+PTL
Sbjct 5346 VFTGFHITKNSKVQLGEYIFEKGDYGDVVNYRSSTTYKLQVGDYFVLTSHSVQPLSSPTL 5405
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
+PQE Y ++ GLYP +N+ + F+SNV +YQ+VGM +Y+T+QGPPGTGKSH +IGLALYYP
Sbjct 5406 LPQERYTKLVGLYPAMNVPESFASNVVHYQRVGMSRYTTVQGPPGTGKSHLSIGLALYYP 5465
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SA+IVYTACSHAAVDALCEKA K LPI++CSRI+PA+ARVECF KFKVN QYVF T+
Sbjct 5466 SAKIVYTACSHAAVDALCEKAHKNLPINRCSRIVPAKARVECFSKFKVNDVGAQYVFSTI 5525
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADI+V DE+SM TNYDLS++NAR+RAKH VY+GDPAQLPAPRTLLTKGTL PE
Sbjct 5526 NALPETTADILVVDEVSMCTNYDLSMINARVRAKHIVYVGDPAQLPAPRTLLTKGTLAPE 5585
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
+FNSVCRLM +GPD+FL TC RCP EIVDTVSALVYD KLKA+K + +C+K +YKG +
Sbjct 5586 HFNSVCRLMVAVGPDIFLATCYRCPKEIVDTVSALVYDKKLKANKVTTGECYKCYYKGSV 5645
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THD SSAIN+PQ+G+V+EFL +NP W+ AVFISPYNSQN+VA ++LGL TQTVDSSQGSE
Sbjct 5646 THDSSSAINKPQLGLVKEFLIKNPKWQSAVFISPYNSQNSVARRMLGLQTQTVDSSQGSE 5705
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI 592
+DYVI+ QT++TAH+ NVNRFNVAITRAK GILC+MSD LY+ L+FT L++
Sbjct 5706 FDYVIYCQTSDTAHALNVNRFNVAITRAKKGILCVMSDSTLYESLEFTPLDV 5757
>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus
HKU5 OX=694008 GN=rep PE=3 SV=1
Length=7182
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/592 (72%), Positives = 501/592 (85%), Gaps = 0/592 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T HK+VLSV+PYVCNAPGCDV DV
Sbjct 5402 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCDVADV 5461
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSY+C H+P SFPLCANG VFGLYKN C GS +VT+FN +ATCDWT +GDY
Sbjct 5462 TKLYLGGMSYFCIDHRPVCSFPLCANGLVFGLYKNMCTGSPSVTEFNRLATCDWTESGDY 5521
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LANT TE LKLFAAETL+ATEE K SY IAT++E++ +REL L WE GK +PPLNRNY
Sbjct 5522 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELLLVWEAGKAKPPLNRNY 5581
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V L APT+
Sbjct 5582 VFTGYHITKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLQAPTI 5641
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
V QE YV+ITGLYPTL + +EF+++VAN+QK G K+ T+QGPPGTGKSHFAIGLA+YYP
Sbjct 5642 VNQERYVKITGLYPTLTVPEEFANHVANFQKAGFSKFVTVQGPPGTGKSHFAIGLAIYYP 5701
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+AR+VYTACSHAAVDALCEKA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F T+
Sbjct 5702 TARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDQFKVNETNSQYLFSTI 5761
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPET+ADI+V DE+SM TNYDLSV+NAR++AKH VY+GDPAQLPAPRTLLT+GTLEPE
Sbjct 5762 NALPETSADILVVDEVSMCTNYDLSVINARIKAKHIVYVGDPAQLPAPRTLLTRGTLEPE 5821
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
FNSV RLM +GPD+FL C RCP EIV+TVSALVY+NKL A K S QCFK+ YKG +
Sbjct 5822 NFNSVTRLMCNLGPDIFLSVCYRCPEEIVNTVSALVYNNKLVAKKPASGQCFKILYKGSV 5881
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THD SSAINRPQ+ V+ F+ NP W KAVFISPYNSQNAVA +LGL TQTVDSSQGSE
Sbjct 5882 THDASSAINRPQLNFVKSFIAANPNWSKAVFISPYNSQNAVARSVLGLTTQTVDSSQGSE 5941
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI 592
Y YVIF QT +TAH+ N+NRFNVA+TRA+ GILC+M+ + L+D L+F + +
Sbjct 5942 YPYVIFCQTADTAHANNINRFNVAVTRAQKGILCVMTSQALFDSLEFAEVSL 5993
>sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East
respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=rep PE=1 SV=1
Length=7078
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/592 (72%), Positives = 503/592 (85%), Gaps = 0/592 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T HK+VLSV+PYVCNAPGC V+DV
Sbjct 5311 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCGVSDV 5370
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSY+C H+P SFPLCANG VFGLYKN C GS ++ +FN +ATCDWT +GDY
Sbjct 5371 TKLYLGGMSYFCVDHRPVCSFPLCANGLVFGLYKNMCTGSPSIVEFNRLATCDWTESGDY 5430
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LANT TE LKLFAAETL+ATEE K SY IAT++E++ +R+L L WE GK +PPLNRNY
Sbjct 5431 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERQLLLVWEAGKSKPPLNRNY 5490
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V L+APT+
Sbjct 5491 VFTGYHITKNSKVQLGEYIFERIDYSDAVSYKSSTTYKLTVGDIFVLTSHSVATLTAPTI 5550
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
V QE YV+ITGLYPT+ + +EF+S+VAN+QK G KY T+QGPPGTGKSHFAIGLA+YYP
Sbjct 5551 VNQERYVKITGLYPTITVPEEFASHVANFQKSGYSKYVTVQGPPGTGKSHFAIGLAIYYP 5610
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+AR+VYTACSHAAVDALCEKA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F T+
Sbjct 5611 TARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNETNSQYLFSTI 5670
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPET+ADI+V DE+SM TNYDLS++NAR++AKH VY+GDPAQLPAPRTLLT+GTLEPE
Sbjct 5671 NALPETSADILVVDEVSMCTNYDLSIINARIKAKHIVYVGDPAQLPAPRTLLTRGTLEPE 5730
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
FNSV RLM +GPD+FL C RCP EIV TVSALVY+NKL A K+ S QCFK+ YKG +
Sbjct 5731 NFNSVTRLMCNLGPDIFLSMCYRCPKEIVSTVSALVYNNKLLAKKELSGQCFKILYKGNV 5790
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THD SSAINRPQ+ V+ F+T NPAW KAVFISPYNSQNAVA +LGL TQTVDSSQGSE
Sbjct 5791 THDASSAINRPQLTFVKNFITANPAWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSE 5850
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI 592
Y YVIF QT +TAH+ N+NRFNVAITRA+ GILC+M+ + L++ L+FT L
Sbjct 5851 YQYVIFCQTADTAHANNINRFNVAITRAQKGILCVMTSQALFESLEFTELSF 5902
>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus
133/2005 OX=389230 GN=rep PE=3 SV=1
Length=7126
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/592 (71%), Positives = 502/592 (85%), Gaps = 0/592 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T+HK+VLSV+PYVCNAPGCDV+DV
Sbjct 5362 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATTHKMVLSVSPYVCNAPGCDVSDV 5421
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC H+P SFPLCANG VFGLYKN C GS ++ +FN +ATCDW+++GDY
Sbjct 5422 TKLYLGGMSYYCNDHRPVCSFPLCANGLVFGLYKNMCTGSSSIMEFNRLATCDWSDSGDY 5481
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LANT TE LKLFAAETL+ATEE K SY IAT++E++ +REL L WEVGK +PPLNRNY
Sbjct 5482 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELILVWEVGKSKPPLNRNY 5541
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V LSAPT+
Sbjct 5542 VFTGYHLTKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLSAPTI 5601
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
V QE Y++ITG+YPT+ + +EF+++V N+QK G KY T+QGPPGTGKSHFAIGLA+YYP
Sbjct 5602 VNQERYLKITGIYPTITVPEEFANHVVNFQKAGFSKYVTVQGPPGTGKSHFAIGLAIYYP 5661
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+ARIVYTACSHAAVDALC KA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F TV
Sbjct 5662 TARIVYTACSHAAVDALCAKAFKYLNIAKCSRIIPAKARVECYDRFKVNDTNAQYLFSTV 5721
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPE + DI+V DE+SM TNYDLS++N+R++AKH VY+GDPAQLPAPRTLLT+GTLEPE
Sbjct 5722 NALPEISVDILVVDEVSMCTNYDLSIINSRVKAKHIVYVGDPAQLPAPRTLLTRGTLEPE 5781
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
FNSV RLM +GPD+FL C RCP EIV+TVSALVY+NKL A KD S QCFK+ +KG +
Sbjct 5782 NFNSVTRLMCNLGPDIFLSVCYRCPKEIVNTVSALVYNNKLSAKKDASGQCFKILFKGSV 5841
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THD SSAINRPQ+ V+ F+ NP W KAVFISPYNSQNAVA +LGL TQTVDSSQGSE
Sbjct 5842 THDASSAINRPQLNFVKTFIAANPNWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSE 5901
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI 592
Y YVIF QT +TAH+ N+NRFNVA+TRA+ GILC+M+ + L+D L+F L +
Sbjct 5902 YPYVIFCQTADTAHANNLNRFNVAVTRAQKGILCVMTSQVLFDSLEFAELSL 5953
>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus
HKU4 OX=694007 GN=rep PE=1 SV=1
Length=7119
Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/592 (71%), Positives = 500/592 (84%), Gaps = 0/592 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T HK+VLSV+PYVCNAPGCDV+DV
Sbjct 5355 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCDVSDV 5414
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC H+P SFPLCANG VFGLYKN C GS ++ +FN +ATCDW+++GDY
Sbjct 5415 TKLYLGGMSYYCNDHRPVCSFPLCANGLVFGLYKNMCTGSSSIMEFNRLATCDWSDSGDY 5474
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LANT TE LKLFAAETL+ATEE K SY IAT++E++ +REL L WEVGK +PPLNRNY
Sbjct 5475 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELILVWEVGKSKPPLNRNY 5534
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V LSAPT+
Sbjct 5535 VFTGYHLTKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLSAPTI 5594
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
V QE Y++ITG+YPT+ + +EF+++V N+QK G KY T+QGPPGTGKSHFAIGLA+YYP
Sbjct 5595 VNQERYLKITGIYPTITVPEEFANHVVNFQKAGFSKYVTVQGPPGTGKSHFAIGLAIYYP 5654
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+ARIVYTACSHAAVDALCEKA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F TV
Sbjct 5655 TARIVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNDTNSQYLFSTV 5714
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPE + DI+V DE+SM TNYDLS++N+R++AKH VY+GDPAQLPAPRTLL +GTLEPE
Sbjct 5715 NALPEISVDILVVDEVSMCTNYDLSIINSRVKAKHIVYVGDPAQLPAPRTLLIRGTLEPE 5774
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
FNSV RLM +GPD+FL C RCP EIV TVSALVY+NKL A KD S QCFK+ +KG +
Sbjct 5775 NFNSVTRLMCNLGPDIFLSVCYRCPKEIVSTVSALVYNNKLSAKKDASGQCFKILFKGSV 5834
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THD SSAINRPQ+ V+ F+ NP W KAVFISPYNSQNAVA +LGL TQTVDSSQGSE
Sbjct 5835 THDASSAINRPQLNFVKTFIAANPNWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSE 5894
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI 592
Y YVIF QT +TAH+ N+NRFNVA+TRA+ GILC+M+ + L+D L+F L +
Sbjct 5895 YPYVIFCQTADTAHANNLNRFNVAVTRAQKGILCVMTSQVLFDSLEFAELSL 5946
>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus
(strain Mebus) OX=11132 GN=rep PE=3 SV=1
Length=7094
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/596 (69%), Positives = 490/596 (82%), Gaps = 5/596 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV
Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY
Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY
Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL
Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF
Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE
Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG
Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG
Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAARRVLGLQTQTVDSAQG 5834
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPR 594
SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + +
Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTVDK 5890
>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus
(strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1
Length=7094
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/596 (69%), Positives = 490/596 (82%), Gaps = 5/596 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV
Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY
Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY
Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL
Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF
Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE
Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG
Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG
Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPR 594
SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + +
Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTLDK 5890
>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus
(strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1
Length=7094
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/596 (69%), Positives = 490/596 (82%), Gaps = 5/596 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV
Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY
Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY
Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL
Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF
Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE
Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG
Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG
Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPR 594
SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + +
Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTLDK 5890
>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus
(strain Quebec) OX=11133 GN=rep PE=3 SV=1
Length=7059
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/596 (69%), Positives = 490/596 (82%), Gaps = 5/596 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV
Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY
Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY
Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL
Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF
Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE
Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG
Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG
Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPR 594
SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + +
Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTVDK 5890
>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus
OC43 OX=31631 GN=rep PE=1 SV=1
Length=7095
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/596 (68%), Positives = 489/596 (82%), Gaps = 5/596 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV
Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY
Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGLVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY
Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL
Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA++
Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVF 5594
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF
Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE
Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S CFK++YKG
Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSLLCFKVYYKG 5774
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG
Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPR 594
SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + +
Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTLDK 5890
>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
(strain A59) OX=11142 GN=rep PE=1 SV=1
Length=7176
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/603 (67%), Positives = 485/603 (80%), Gaps = 5/603 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKC YDHV+ST HK VLSV+PYVCN+PGCDV DV
Sbjct 5383 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5442
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5443 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5502
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN CTERLKLFAAET KATEE FK Y AT+RE++SDREL LSWE+GK RPPLN+NY
Sbjct 5503 VLANECTERLKLFAAETQKATEEAFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5562
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T N K +GEY F+K + + V YR TTTYKL+VGD F+LTSH V LSAPTL
Sbjct 5563 VFTGYHFTNNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPTL 5622
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R +Y ++ + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5623 VPQENYTSIRFASVY---SVPETFQNNVPNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5679
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RV+C+DKFKVN T +YVF
Sbjct 5680 YCTARVVYTAASHAAVDALCEKAHKFLNINDCTRIVPAKVRVDCYDKFKVNDTTRKYVFT 5739
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DI+V DE+SM TNY+LSV+N+R+RAKHYVYIGDPAQLPAPR LL KGTLE
Sbjct 5740 TINALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLE 5799
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P YFNSV +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA D S+ CFK++YKG
Sbjct 5800 PRYFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNKLKAKNDNSSMCFKVYYKG 5859
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
TH+ SSA+N QI ++ +FL NP+W AVFISPYNSQN VA ++LGL TQTVDS+QG
Sbjct 5860 QTTHESSSAVNMQQIHLISKFLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTVDSAQG 5919
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVA 598
SEYD+VI++QT ETAHS NVNRFNVAITRAK GILC+MS L++ L FT+L + + N
Sbjct 5920 SEYDFVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSSMQLFESLNFTTLTLDKINNP 5979
Query 599 TLQ 601
LQ
Sbjct 5980 RLQ 5982
>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus
(strain 2) OX=76344 GN=rep PE=3 SV=1
Length=7124
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/603 (67%), Positives = 485/603 (80%), Gaps = 5/603 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKC YDHV+ST HK VLSV+PYVCN+PGCDV DV
Sbjct 5331 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5390
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5391 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5450
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN CTERLKLFAAET KATEE+FK Y AT+RE++SDREL LSWE+GK RPPLN+NY
Sbjct 5451 VLANECTERLKLFAAETQKATEESFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5510
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T N K +GEY F+K + + V YR TTTYKL+VGD F+LTSH V LSAPTL
Sbjct 5511 VFTGYHFTSNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPTL 5570
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R +Y ++ + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5571 VPQENYTSIRFASVY---SVPETFQNNVPNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5627
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RV+C+DKFKVN T +YVF
Sbjct 5628 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVDCYDKFKVNDTTRKYVFT 5687
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DI+V DE+SM TNY+LSV+N+R+RAKHYVYIGDPAQLPAPR LL KGTLE
Sbjct 5688 TINALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLE 5747
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P YFNSV +LM +GPD+FLGTC RCP EIVDTVSALVY NKLKA D S+ CFK++YKG
Sbjct 5748 PRYFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYHNKLKAKNDNSSMCFKVYYKG 5807
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
TH+ SSA+N QI ++ +FL NP+W AVFISPYNSQN VA ++LGL TQTVDS+QG
Sbjct 5808 QTTHESSSAVNMQQIYLISKFLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTVDSAQG 5867
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVA 598
SEYD+VI++QT ETAHS NVNRFNVAITRAK GILC+MS L++ L F++L + + N
Sbjct 5868 SEYDFVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSSMQLFESLNFSTLTLDKINNP 5927
Query 599 TLQ 601
LQ
Sbjct 5928 RLQ 5930
>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus
(strain JHM) OX=11144 GN=rep PE=1 SV=1
Length=7180
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/603 (66%), Positives = 477/603 (79%), Gaps = 5/603 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKC YDHV+ST HK VLSV+PYVCN+PGCDV DV
Sbjct 5389 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5448
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5449 TKLYLGGMSYYCEAHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5508
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN CTERLKLFAAET KATEE FK Y AT+RE++SDREL LSWE+GK RPPLN+NY
Sbjct 5509 VLANECTERLKLFAAETQKATEEAFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5568
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T N K +GEY F+K + + V YR TTTYKL+VGD F+LTSH V LSAPTL
Sbjct 5569 VFTGYHFTNNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPTL 5628
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y VR Y ++ + F +NV NYQ +G+++Y T+QGPPGTGKSH AIG A+Y
Sbjct 5629 VPQENYTSVRFASAY---SVPETFQNNVPNYQHIGIKRYCTVQGPPGTGKSHLAIGHAVY 5685
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RV+C+DKF VN T +YVF
Sbjct 5686 YCTARVVYTAASHAAVDALCEKAHKFLNINDCARIVPAKLRVDCYDKFNVNDTTRKYVFT 5745
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DI+V DE+SM TNY+LSV+N+R+RAKHYVYIGDPAQLPAPR LL KGTLE
Sbjct 5746 TINALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLE 5805
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P YFNSV +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA D SA CFK++YKG
Sbjct 5806 PRYFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNKLKAKNDNSAMCFKVYYKG 5865
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
TH+ SSA+N QI ++ + L NP+W AVFISPYNSQN VA ++LGL TQT DS+QG
Sbjct 5866 QTTHESSSAVNMQQIHLISKLLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTADSAQG 5925
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVA 598
S YD+VI++QT +TAHS NVNRFNVAITRAK GILC+MS L FT+L + + N
Sbjct 5926 SAYDFVIYSQTAQTAHSVNVNRFNVAITRAKKGILCVMSSMQLIGVFNFTTLTLDKINNP 5985
Query 599 TLQ 601
LQ
Sbjct 5986 RLQ 5988
>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1
Length=7152
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/604 (66%), Positives = 484/604 (80%), Gaps = 9/604 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T+HK VLSV+PYVCNAP CDV+DV
Sbjct 5356 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5415
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5416 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5475
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN C ERLKLFAAET KATEE FK SY AT++E++SDRE+ L WE GK +PPLN+NY
Sbjct 5476 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREIILCWETGKVKPPLNKNY 5535
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T K +GEY F+K + + V YR TTTYKL++GD FVLTSH+V LSAPTL
Sbjct 5536 VFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVANLSAPTL 5595
Query 241 VPQEHY--VRITGLY--PTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLA 296
VPQE+Y +R + +Y P L F +NVANYQ +GM++Y T+QGPPGTGKSH AIGLA
Sbjct 5596 VPQENYASIRFSSVYSVPLL-----FQTNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLA 5650
Query 297 LYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYV 356
+YY +AR+VYTA SHAAVDALCEKA K+L I+ C+RIIPA+ RV+C+DKFK+N T +YV
Sbjct 5651 VYYYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYV 5710
Query 357 FCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGT 416
F T+NALPE DIVV DE+SM TNY+LSV+NAR++AKHYVYIGDPAQLPAPR LL+KG+
Sbjct 5711 FTTINALPELVTDIVVVDEVSMLTNYELSVINARVKAKHYVYIGDPAQLPAPRVLLSKGS 5770
Query 417 LEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFY 476
LEP +FNS+ ++M +GPD+FLG C RCP EIV+TVSALVYDNKLKA D S+ CFK+++
Sbjct 5771 LEPRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYF 5830
Query 477 KGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSS 536
KG TH+ SSA+N QI ++ +FL NP W AVFISPYNSQN VA +ILG+ TQTVDS+
Sbjct 5831 KGQTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRILGVQTQTVDSA 5890
Query 537 QGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRN 596
QGSEYDYVI++QT ETAHS NVNRFNVAITRAK GI C+MS+ L++ L F +L + +
Sbjct 5891 QGSEYDYVIYSQTAETAHSINVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQ 5950
Query 597 VATL 600
TL
Sbjct 5951 NQTL 5954
>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1
Length=7132
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/602 (65%), Positives = 484/602 (80%), Gaps = 5/602 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T+HK VLSV+PYVCNAP CDV+DV
Sbjct 5336 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5395
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5396 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5455
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN C ERLKLFAAET KATEE FK SY AT++E++SDRE+ L WE GK +PPLN+NY
Sbjct 5456 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREVILCWETGKVKPPLNKNY 5515
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T K +GEY F+K + + V YR TTTYKL++GD FVLTSH+V LSAPTL
Sbjct 5516 VFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVASLSAPTL 5575
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R + +Y ++ F +NVANYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5576 VPQENYASIRFSSVY---SVPLVFQNNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5632
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RIIPA+ RV+C+DKFK+N T +YVF
Sbjct 5633 YYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFT 5692
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR++AKHYVYIGDPAQLPAPR LL+KG+LE
Sbjct 5693 TINALPELVTDIVVVDEVSMLTNYELSVINARIKAKHYVYIGDPAQLPAPRVLLSKGSLE 5752
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P +FNS+ ++M +GPD+FLG C RCP EIV+TVSALVYDNKLKA D S+ CFK+++KG
Sbjct 5753 PRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKG 5812
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
TH+ SSA+N QI ++ +FL NP W AVFISPYNSQN VA ++LG+ TQTVDS+QG
Sbjct 5813 QTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRVLGVQTQTVDSAQG 5872
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVA 598
SEYDYVI++QT ETAHS NVNRFNVAITRAK GI C+MS+ L++ L F +L + +
Sbjct 5873 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQ 5932
Query 599 TL 600
TL
Sbjct 5933 TL 5934
>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1
Length=7182
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/602 (65%), Positives = 484/602 (80%), Gaps = 5/602 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T+HK VLSV+PYVCNAP CDV+DV
Sbjct 5386 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5445
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5446 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5505
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN C ERLKLFAAET KATEE FK SY AT++E++SDRE+ L WE GK +PPLN+NY
Sbjct 5506 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREVILCWETGKVKPPLNKNY 5565
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T K +GEY F+K + + V YR TTTYKL++GD FVLTSH+V LSAPTL
Sbjct 5566 VFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVASLSAPTL 5625
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R + +Y ++ F +NVANYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5626 VPQENYASIRFSSVY---SVPLVFQNNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5682
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RIIPA+ RV+C+DKFK+N T +YVF
Sbjct 5683 YYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFT 5742
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR++AKHYVYIGDPAQLPAPR LL+KG+LE
Sbjct 5743 TINALPELVTDIVVVDEVSMLTNYELSVINARIKAKHYVYIGDPAQLPAPRVLLSKGSLE 5802
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P +FNS+ ++M +GPD+FLG C RCP EIV+TVSALVYDNKLKA D S+ CFK+++KG
Sbjct 5803 PRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKG 5862
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
TH+ SSA+N QI ++ +FL NP W AVFISPYNSQN VA ++LG+ TQTVDS+QG
Sbjct 5863 QTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRVLGVQTQTVDSAQG 5922
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVA 598
SEYDYVI++QT ETAHS NVNRFNVAITRAK GI C+MS+ L++ L F +L + +
Sbjct 5923 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQ 5982
Query 599 TL 600
TL
Sbjct 5983 TL 5984
>sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151
GN=rep PE=1 SV=1
Length=6684
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/592 (62%), Positives = 455/592 (77%), Gaps = 1/592 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
A G CV+C SQT LRCG C+RRP LC KC YDHV+ T HK ++S+ PYVC+ GC+V DV
Sbjct 4928 AAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDV 4987
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+L+LGG+SYYC +HKP +SFPLCANG VFGLYK++ VGS+ V DFN +A DWTN DY
Sbjct 4988 TKLFLGGLSYYCMNHKPQLSFPLCANGNVFGLYKSSAVGSEAVEDFNKLAVSDWTNVEDY 5047
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN E LK+FAAET+KA EE+ K Y A ++EV+ +E+ L WE K +PPLNRN
Sbjct 5048 KLANNVKESLKIFAAETVKAKEESVKSEYAYAVLKEVIGPKEIVLQWEASKTKPPLNRNS 5107
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT ++++K++K+Q+GE+ FE+ +YG D+V Y+ T+TYKL G FVLTSH V PL AP
Sbjct 5108 VFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKAPI 5167
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
LV QE Y I+ LYP NI++ +++ V YQ +G QK++T+QGPPG+GKSH IGL LYY
Sbjct 5168 LVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYY 5227
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIVYTACSHAAVDALCEKA K +D+CSRIIP R RV+C+ FK N+T QY+FCT
Sbjct 5228 PQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCT 5287
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE + DIVV DE+SM TNYDLSV+N+RL KH VY+GDP QLPAPRTL+ KG L+P
Sbjct 5288 VNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQP 5347
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
+ +N V + M T+GPD+FL C RCPAEIV TVSALVY+NK +S QCFKMF KG
Sbjct 5348 QDYNVVTKRMCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQ 5407
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ + +S+IN Q+ VV+ FL NP WRKAVFISPYNSQN VA ++LGL TQTVDS+QGS
Sbjct 5408 VQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGS 5467
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLE 591
EYDYVI+TQT++T H+ NVNRFNVAITRAKVGILCIM DR +Y+ L F L+
Sbjct 5468 EYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELK 5519
>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus
(strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2
Length=6709
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/592 (62%), Positives = 454/592 (77%), Gaps = 1/592 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
A G CV+C SQT LRCG C+RRP LC KC YDHV+ T HK ++S+ PYVC+ GC+V DV
Sbjct 4953 AAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDV 5012
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+L+LGG+SYYC HKP +SFPLCANG VFGLYK++ VGS++V DFN +A DWTN DY
Sbjct 5013 TKLFLGGLSYYCMDHKPQLSFPLCANGNVFGLYKSSAVGSEDVEDFNKLAVSDWTNVEDY 5072
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN E LK+FAAET+KA EE+ K Y A ++EV+ +E+ L WE K +PPLNRN
Sbjct 5073 KLANNVKESLKIFAAETVKAKEESVKSEYAYAILKEVIGPKEIVLQWEASKTKPPLNRNS 5132
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT ++++K++K+Q+GE+ FE+ +YG D+V Y+ T+TYKL G FVLTSH V PL A
Sbjct 5133 VFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKATI 5192
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
LV QE Y I+ LYP NI++ +++ V YQ +G QK++T+QGPPG+GKSH IGL LYY
Sbjct 5193 LVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYY 5252
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIVYTACSHAAVDALCEKA K +D+CSRIIP R RV+C+ FK N+T QY+FCT
Sbjct 5253 PQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCT 5312
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE + DIVV DE+SM TNYDLSV+N+RL KH VY+GDP QLPAPRTL+ KG L+P
Sbjct 5313 VNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQP 5372
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
+ +N V + + T+GPD+FL C RCPAEIV TVSALVY+NK +S QCFKMF KG
Sbjct 5373 QDYNVVTQRVCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQ 5432
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ + +S+IN Q+ VV+ FL NP WRKAVFISPYNSQN VA ++LGL TQTVDS+QGS
Sbjct 5433 VQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGS 5492
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLE 591
EYDYVI+TQT++T H+ NVNRFNVAITRAKVGILCIM DR +Y+ L F L+
Sbjct 5493 EYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELK 5544
>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus
NL63 OX=277944 GN=rep PE=1 SV=1
Length=6729
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/602 (61%), Positives = 452/602 (75%), Gaps = 3/602 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
A G CV+C SQT LRCG C+R+P LC KC YDHV T HK +L++ PYVCNA GC V+DV
Sbjct 4971 AAGLCVVCGSQTVLRCGDCLRKPMLCTKCAYDHVFGTDHKFILAITPYVCNASGCGVSDV 5030
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
+LYLGG++YYC +HKP +SFPLC+ G +FGLYKN+ GS +V FN +AT DWT+ DY
Sbjct 5031 KKLYLGGLNYYCTNHKPQLSFPLCSAGNIFGLYKNSATGSLDVEVFNRLATSDWTDVRDY 5090
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN + L+LFAAET+KA EE+ K SY AT++EV+ +EL LSWE GK +PPLNRN
Sbjct 5091 KLANDVKDTLRLFAAETIKAKEESVKSSYAFATLKEVVGPKELLLSWESGKVKPPLNRNS 5150
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT ++++K+SK QIGE+ FEK +YG D V Y+ T T KL G FVLTSH V PL APT
Sbjct 5151 VFTCFQISKDSKFQIGEFIFEKVEYGSDTVTYKSTVTTKLVPGMIFVLTSHNVQPLRAPT 5210
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
+ QE Y I L+P N+SD +++ V YQ +G QK +T+QGPPG+GKSH +IGL LYY
Sbjct 5211 IANQEKYSSIYKLHPAFNVSDAYANLVPYYQLIGKQKITTIQGPPGSGKSHCSIGLGLYY 5270
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIV+ AC+HAAVD+LC KA+ IDKC+RIIPARARVEC+ FK N+T QY+F T
Sbjct 5271 PGARIVFVACAHAAVDSLCAKAMTVYSIDKCTRIIPARARVECYSGFKPNNTSAQYIFST 5330
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE ADIVV DE+SM TNYDLSV+N RL KH VY+GDP QLPAPR ++TKG +EP
Sbjct 5331 VNALPECNADIVVVDEVSMCTNYDLSVINQRLSYKHIVYVGDPQQLPAPRVMITKGVMEP 5390
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
+N V + M IGPD+FL C RCPAEIV+TVS LVY+NK K S QCFK+F+KG
Sbjct 5391 VDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKPASKQCFKVFFKGN 5450
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ D S+INR Q+ +V+ FL +NP+W KAVFISPYNSQN VAS+ LGL QTVDSSQGS
Sbjct 5451 VQVDNGSSINRKQLEIVKLFLVKNPSWSKAVFISPYNSQNYVASRFLGLQIQTVDSSQGS 5510
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVAT 599
EYDYVI+ QT++TAH+CNVNRFNVAITRAK GI C+M D+ L+D L+F EI ++ +
Sbjct 5511 EYDYVIYAQTSDTAHACNVNRFNVAITRAKKGIFCVMCDKTLFDSLKF--FEIKHADLHS 5568
Query 600 LQ 601
Q
Sbjct 5569 SQ 5570
>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus
512/2005 OX=693999 GN=rep PE=3 SV=1
Length=6793
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/599 (61%), Positives = 452/599 (75%), Gaps = 1/599 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+ G CV+C+SQT LRCG CIRRP LC KC YDHV+STSHK +L++ PYVC + GC V+DV
Sbjct 5039 SAGLCVVCSSQTVLRCGDCIRRPMLCTKCAYDHVVSTSHKFILAITPYVCCSSGCGVSDV 5098
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGG+SY+C HKP +SFPLC++G VFGLYKN+ GS +V DFN +AT DWT+ DY
Sbjct 5099 TKLYLGGLSYWCVDHKPRLSFPLCSSGNVFGLYKNSATGSPDVDDFNTLATSDWTDVKDY 5158
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN + L+LFAAET+KA EE+ K SY AT+ EV+ +EL L WEVGKPRPPL+RN
Sbjct 5159 KLANDVKDSLRLFAAETIKAKEESVKSSYACATIHEVVGPKELVLKWEVGKPRPPLSRNS 5218
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDY-GDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT Y +TKN+K Q+GE+TFEK DY DAV Y+ T T KL G FVLTSH V PL APT
Sbjct 5219 VFTCYHITKNTKFQVGEFTFEKLDYDNDAVSYKSTATTKLVPGMVFVLTSHNVQPLRAPT 5278
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
++ QE Y + L P NI +++S+ + YQ +G QK +T+QGPPG+GKSH IGL LY+
Sbjct 5279 IINQERYSTLHKLRPAFNIHEDYSNLIPYYQLIGKQKLTTIQGPPGSGKSHCVIGLGLYF 5338
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIV+TACSHAAVD+LC KA D+CSRIIP +AR+EC+D FK N+T QY+F T
Sbjct 5339 PGARIVFTACSHAAVDSLCVKAATAYSSDRCSRIIPQKARIECYDGFKSNNTSAQYLFST 5398
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE ADI V DE+SM TNYDLSV+N R+ +H VY+GDP QLPAPR ++T+G L P
Sbjct 5399 VNALPEVNADICVVDEVSMCTNYDLSVINQRVNYRHIVYVGDPQQLPAPRVMITRGVLVP 5458
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
E +N V R M + PD+FL C RCPAEIV+TVS +VY+N+ K +S +CFK++ +G
Sbjct 5459 EDYNVVTRRMCVLKPDIFLHKCYRCPAEIVNTVSEMVYENQFVPVKSESKECFKIYCRGN 5518
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ D S+INR Q+ VVR FL +NP W KAVFISPYNSQN VA ++LGL QTVDSSQGS
Sbjct 5519 VQVDNGSSINRRQLEVVRMFLAKNPKWAKAVFISPYNSQNYVAGRVLGLQIQTVDSSQGS 5578
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVA 598
EYDYVI+TQT++TAH+ NVNRFNVAITRAK GILCIM DR+L+D L+F L++ V
Sbjct 5579 EYDYVIYTQTSDTAHASNVNRFNVAITRAKKGILCIMCDRELFDILKFYELKLSDLQVG 5637
>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic
diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1
Length=6781
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/593 (62%), Positives = 443/593 (75%), Gaps = 1/593 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+ G CV+C SQT LRCG C+RRP LC KC YDHVI T+HK +L++ PYVC A C V DV
Sbjct 5028 SAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVIGTTHKFILAITPYVCCASDCGVNDV 5087
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGG+SY+C HKP ++FPLC+ G VFGLYKN+ GS +V DFN IAT DWT+ DY
Sbjct 5088 TKLYLGGLSYWCHEHKPRLAFPLCSAGNVFGLYKNSATGSPDVEDFNRIATSDWTDVSDY 5147
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN + L+LFAAET+KA EE+ K SY AT+ EV+ +EL L WEVG+P+PPLNRN
Sbjct 5148 RLANDVKDSLRLFAAETIKAKEESVKSSYACATLHEVVGPKELLLKWEVGRPKPPLNRNS 5207
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDY-GDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT Y +TKN+K QIGE+ FEK +Y DAV Y+ T T KL G FVLTSH V PL APT
Sbjct 5208 VFTCYHITKNTKFQIGEFVFEKAEYDNDAVTYKTTATTKLVPGMVFVLTSHNVQPLRAPT 5267
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
+ QE Y I L+P NI + +SS V YQ +G QK +T+QGPPG+GKSH IGL LYY
Sbjct 5268 IANQERYSTIHKLHPAFNIPEAYSSLVPYYQLIGKQKITTIQGPPGSGKSHCVIGLGLYY 5327
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIV+TACSHAAVD+LC KA DKCSRIIP RARVEC+D FK N+T QY+F T
Sbjct 5328 PGARIVFTACSHAAVDSLCVKASTAYSNDKCSRIIPQRARVECYDGFKSNNTSAQYLFST 5387
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE ADIVV DE+SM TNYDLSV+N R+ +H VY+GDP QLPAPR ++++GTLEP
Sbjct 5388 VNALPECNADIVVVDEVSMCTNYDLSVINQRISYRHVVYVGDPQQLPAPRVMISRGTLEP 5447
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
+ +N V + M + PD+FL C RCPAEIV TVS +VY+N+ S QCFK+F KG
Sbjct 5448 KDYNVVTQRMCALKPDVFLHKCYRCPAEIVRTVSEMVYENQFIPVHPDSKQCFKIFCKGN 5507
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ D S+INR Q+ VVR FL +NP W KAVFISPYNSQN VAS++LGL QTVDSSQGS
Sbjct 5508 VQVDNGSSINRRQLDVVRMFLAKNPRWSKAVFISPYNSQNYVASRLLGLQIQTVDSSQGS 5567
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI 592
EYDYVI+ QT++TAH+ NVNRFNVAITRAK GILCIM DR L+D L+F L++
Sbjct 5568 EYDYVIYAQTSDTAHASNVNRFNVAITRAKKGILCIMCDRSLFDLLKFFELKL 5620
>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus
229E OX=11137 GN=rep PE=1 SV=1
Length=6758
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/593 (60%), Positives = 448/593 (76%), Gaps = 1/593 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
A G CV+C SQT LRCG C+RRP LC KC YDHV T HK +L++ PYVCN GC+V DV
Sbjct 4996 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 5055
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGG++YYC HKP +SFPLC+ G VFGLYK++ +GS ++ FN ++T DW++ DY
Sbjct 5056 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 5115
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN E L+LFAAET+KA EE+ K SY AT++E++ +EL L WE GK +PPLNRN
Sbjct 5116 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 5175
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT +++TK+SK Q+GE+ FEK DYG D V Y+ T T KL G F+LTSH V PL APT
Sbjct 5176 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 5235
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
+ QE Y I L+P+ N+SD +++ V YQ +G Q+ +T+QGPPG+GKSH +IG+ +YY
Sbjct 5236 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 5295
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIV+TACSHAAVD+LC KA+ +DKC+RIIPARARVEC+ FK N+ QYVF T
Sbjct 5296 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 5355
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE ADIVV DE+SM TNYDLSV+N R+ KH VY+GDP QLPAPR L++KG +EP
Sbjct 5356 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 5415
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
+N V + M IGPD+FL C RCPAEIV+TVS LVY+NK K+ S QCFK+F +G
Sbjct 5416 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 5475
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ D S+INR Q+ VV+ F+ +N W KAVFISPYNSQN VA+++LGL TQTVDS+QGS
Sbjct 5476 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 5535
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI 592
EYDYVIF QT++TAH+CN NRFNVAITRAK GI CIMSDR L+D L+F + +
Sbjct 5536 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITM 5588
>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1
Length=6631
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/603 (59%), Positives = 445/603 (74%), Gaps = 9/603 (1%)
Query 3 GACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQ 62
G CV+CNSQT LRCG CIR+PFLCCKCCYDHV+ T HK VLS+NPY+C+ PGC DVT+
Sbjct 4873 GVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQPGCGEADVTK 4932
Query 63 LYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYIL 122
LYLGGMSY+C +HKP +S PL +NG VFG+Y+ C GS+NV DFN +AT +W+ YIL
Sbjct 4933 LYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSTVEPYIL 4992
Query 123 ANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVF 182
AN C + L+ FAAET+KATEE K + A VREVLSDREL LSWE GK RPPLNRNYVF
Sbjct 4993 ANRCVDSLRRFAAETVKATEELHKQQFASAEVREVLSDRELILSWEPGKTRPPLNRNYVF 5052
Query 183 TGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVP 242
TG+ T+ SKVQ+G++TFEKG+ D V YR T+T KL+VGD FVLTSH V+ L APTL P
Sbjct 5053 TGFHFTRTSKVQLGDFTFEKGEGKDVVYYRATSTAKLSVGDIFVLTSHNVVSLIAPTLCP 5112
Query 243 QEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSA 302
Q+ + R L P + + F +N+ Y VG QK +T+QGPPG+GKSHFAIGLA Y+ +A
Sbjct 5113 QQTFSRFVNLRPNVMVPACFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAAYFSNA 5172
Query 303 RIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNA 362
R+V+TACSHAAVDALCEKA K+L +D C+RI+P R ++CF KFK N T ++Y+F T+NA
Sbjct 5173 RVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTIDCFSKFKANDTGKKYIFSTINA 5232
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
LPE + DI++ DE+SM TNY+LS +N ++ ++ VY+GDPAQLPAPRTLL G+L P+ +
Sbjct 5233 LPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSPKDY 5291
Query 423 NSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV--- 479
N V LM + PD+FL C RCP EIVDTVS LVYD K A+ +S QCFK+
Sbjct 5292 NVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRQCFKVIVNNGNSD 5351
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ H+ SA N Q+ V++F+ RN WR+A FISPYN+ N A ++LGL QTVDSSQGS
Sbjct 5352 VGHESGSAYNITQLEFVKDFVCRNKEWREATFISPYNAMNQRAYRMLGLNVQTVDSSQGS 5411
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRD-LYDKLQFTSLEIPRRNVA 598
EYDYVIF T ++ H+ N+NRFNVA+TRAK GIL +M RD LY L+F L+ +VA
Sbjct 5412 EYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFIELD----SVA 5467
Query 599 TLQ 601
+LQ
Sbjct 5468 SLQ 5470
>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain Beaudette CK) OX=160235 GN=rep
PE=3 SV=1
Length=6629
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/593 (59%), Positives = 442/593 (75%), Gaps = 5/593 (1%)
Query 3 GACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQ 62
G CV+CNSQT LRCG CIR+PFLCCKCCYDHV+ T HK VLS+NPY+C+ GC DVT+
Sbjct 4871 GVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQLGCGEADVTK 4930
Query 63 LYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYIL 122
LYLGGMSY+C +HKP +S PL +NG VFG+Y+ C GS+NV DFN +AT +W+ YIL
Sbjct 4931 LYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSIVEPYIL 4990
Query 123 ANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVF 182
AN C++ L+ FAAET+KATEE K + A VREV SDREL LSWE GK RPPLNRNYVF
Sbjct 4991 ANRCSDSLRRFAAETVKATEELHKQQFASAEVREVFSDRELILSWEPGKTRPPLNRNYVF 5050
Query 183 TGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVP 242
TGY T+ SKVQ+G++TFEKG+ D V Y+ T+T KL+VGD FVLTSH V+ L APTL P
Sbjct 5051 TGYHFTRTSKVQLGDFTFEKGEGKDVVYYKATSTAKLSVGDIFVLTSHNVVSLVAPTLCP 5110
Query 243 QEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSA 302
Q+ + R L P + + + F +N+ Y VG QK +T+QGPPG+GKSHFAIGLA+Y+ SA
Sbjct 5111 QQTFSRFVNLRPNVMVPECFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAVYFSSA 5170
Query 303 RIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNA 362
R+V+TACSHAAVDALCEKA K+L +D C+RI+P R V+CF KFK N T ++Y+F T+NA
Sbjct 5171 RVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTVDCFSKFKANDTGKKYIFSTINA 5230
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
LPE + DI++ DE+SM TNY+LS +N ++ ++ VY+GDPAQLPAPRTLL G+L P+ +
Sbjct 5231 LPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSPKDY 5289
Query 423 NSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV--- 479
N V LM + PD+FL C RCP EIVDTVS LVYD K A+ +S +CFK+
Sbjct 5290 NVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGNSD 5349
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ H+ SA N Q+ V++F+ RN WR+A+FISPYN+ N A ++LGL QTVDSSQGS
Sbjct 5350 VGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSSQGS 5409
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRD-LYDKLQFTSLE 591
EYDYVIF T ++ H+ N+NRFNVA+TRAK GIL +M RD LY L+FT L+
Sbjct 5410 EYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELD 5462
>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1
SV=1
Length=6629
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/593 (59%), Positives = 442/593 (75%), Gaps = 5/593 (1%)
Query 3 GACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQ 62
G CV+CNSQT LRCG CIR+PFLCCKCCYDHV+ T HK VLS+NPY+C+ GC DVT+
Sbjct 4871 GVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQLGCGEADVTK 4930
Query 63 LYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYIL 122
LYLGGMSY+C +HKP +S PL +NG VFG+Y+ C GS+NV DFN +AT +W+ YIL
Sbjct 4931 LYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSIVEPYIL 4990
Query 123 ANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVF 182
AN C++ L+ FAAET+KATEE K + A VREV SDREL LSWE GK RPPLNRNYVF
Sbjct 4991 ANRCSDSLRRFAAETVKATEELHKQQFASAEVREVFSDRELILSWEPGKTRPPLNRNYVF 5050
Query 183 TGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVP 242
TGY T+ SKVQ+G++TFEKG+ D V Y+ T+T KL+VGD FVLTSH V+ L APTL P
Sbjct 5051 TGYHFTRTSKVQLGDFTFEKGEGKDVVYYKATSTAKLSVGDIFVLTSHNVVSLVAPTLCP 5110
Query 243 QEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSA 302
Q+ + R L P + + + F +N+ Y VG QK +T+QGPPG+GKSHFAIGLA+Y+ SA
Sbjct 5111 QQTFSRFVNLRPNVMVPECFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAVYFSSA 5170
Query 303 RIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNA 362
R+V+TACSHAAVDALCEKA K+L +D C+RI+P R V+CF KFK N T ++Y+F T+NA
Sbjct 5171 RVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTVDCFSKFKANDTGKKYIFSTINA 5230
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
LPE + DI++ DE+SM TNY+LS +N ++ ++ VY+GDPAQLPAPRTLL G+L P+ +
Sbjct 5231 LPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSPKDY 5289
Query 423 NSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV--- 479
N V LM + PD+FL C RCP EIVDTVS LVYD K A+ +S +CFK+
Sbjct 5290 NVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGNSD 5349
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ H+ SA N Q+ V++F+ RN WR+A+FISPYN+ N A ++LGL QTVDSSQGS
Sbjct 5350 VGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSSQGS 5409
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRD-LYDKLQFTSLE 591
EYDYVIF T ++ H+ N+NRFNVA+TRAK GIL +M RD LY L+FT L+
Sbjct 5410 EYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELD 5462
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis
thaliana OX=3702 GN=MAA3 PE=2 SV=1
Length=818
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 99/251 (39%), Gaps = 47/251 (19%)
Query 369 DIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVC-R 427
D+V+ DE + A +++ R K +GDP QLPA T+++ + Y S+ R
Sbjct 485 DVVIIDEAAQAVE-PATLIPLATRCKQVFLVGDPKQLPA--TVISTVAQDSGYGTSMFER 541
Query 428 LMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQ--------------CFK 473
L K P L T R EI S Y+ L+ D AQ CF
Sbjct 542 LQKAGYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQTTRDWHKYRCFGPFCFF 601
Query 474 MFYKGVITHD---VSSAINRPQIGVV----REFLTRNPAWRKA---VFISPYNSQ----- 518
++G + S +N ++ V +T P + + ISPYN Q
Sbjct 602 DIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFK 661
Query 519 -------NAVASKILGLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNVAIT 566
A K++ + TVD QG E D IF+ + + N R NV IT
Sbjct 662 DRFKEMFGTEAEKVVDI--NTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGIT 719
Query 567 RAKVGILCIMS 577
RAK +L + S
Sbjct 720 RAKSSVLVVGS 730
>sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus
1 OX=360393 GN=rep PE=2 SV=1
Length=6733
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (45%), Gaps = 15/176 (9%)
Query 280 LQGPPGTGKSHFAIG--LALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAR 337
+ GPPGTGK+ F L+ PS R VY A +H V + EK +D +
Sbjct 5541 VMGPPGTGKTTFVYNTYLSKASPSNRFVYCAPTHRLVGDMDEK------VDGAVVVSAYN 5594
Query 338 ARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYV 397
R +K + + + + CT N LP + +++ DE+S+ + + + + K V
Sbjct 5595 DRTYRNPVWKKDDSYD-VLLCTHNTLPFIKSAVLIVDEVSLIPPHVMIKI-LSMGFKKVV 5652
Query 398 YIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVS 453
+GDP QL +P K + + F L++ +L C RCP +I+ S
Sbjct 5653 LLGDPFQL-SPVYKNHKVHFKYDTF----YLLQLATQKRYLTACYRCPPQILSAFS 5703
>sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream
virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180
GN=rep PE=1 SV=1
Length=6872
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/302 (22%), Positives = 126/302 (42%), Gaps = 25/302 (8%)
Query 274 MQKYSTLQGPPGTGKSHFAIG--LALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCS 331
++K + + GPPGTGK+ + + + P+ ++ Y A +H V ++ +
Sbjct 5641 LKKATFIIGPPGTGKTTYVMKNFIDTASPANKVAYIAPTHKLVQSMDQAIWDKYNHTVSV 5700
Query 332 RIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARL 391
++ + ++ + +NS + + T A+ ++FDE++++ + + +
Sbjct 5701 SVVKSELNNNKYN-YPLNSATKTIMLGTPGAVCTHAGCTLIFDEVTLSQLNTIINAISVV 5759
Query 392 RAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDT 451
+ +++GDP QL P T + +L Y N L + L C RCP+ I
Sbjct 5760 KPSQVIFLGDPLQL-GPVTHM--RSLSYSYTN--FPLFQFCNDSRVLSICYRCPSNI--- 5811
Query 452 VSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVF 511
++ +K + D + + G VS + P + L RN + V
Sbjct 5812 -----FNLWVKPYTDSNVRIDPHAAGGDAKIIVSDQCSNPDAYQYVQKLARNNPDK--VL 5864
Query 512 ISPYNSQNAVASKILGLPTQ-TVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKV 570
+ Y I+GL T+DSSQG Y + I T + +NR VA++R+
Sbjct 5865 LCNYKK------PIIGLENAVTIDSSQGKTYKHTIVVLLGNTNFTQVINRAIVAMSRSTH 5918
Query 571 GI 572
I
Sbjct 5919 SI 5920
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (24%), Positives = 39/92 (42%), Gaps = 9/92 (10%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+ C C++ T C C + +C C Y+H++ T H + +V CD TD
Sbjct 5397 SASQCYFCDNATVSTCSDCTVQYPMCAHCAYEHLMLTDHTPTQVLPCHV-----CDQTDP 5451
Query 61 TQL----YLGGMSYYCKSHKPPISFPLCANGQ 88
L +G + C +H ++ PL + +
Sbjct 5452 RHLNHTFVMGTVKVACDNHVEGMALPLVDHAR 5483
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease
DNA2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=DNA2 PE=1 SV=1
Length=1522
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 90/211 (43%), Gaps = 28/211 (13%)
Query 275 QKYSTLQGPPGTGKSHF--AIGLALYYPSARIVYTACSHAAVDALCEK-----------A 321
+ Y+ + G PGTGK+ I L R++ T+ +H+AVD + K
Sbjct 1067 EDYALILGMPGTGKTTVIAEIIKILVSEGKRVLLTSYTHSAVDNILIKLRNTNISIMRLG 1126
Query 322 LKYLPIDKCSRIIPARARVECFDKF--KVNSTLEQYVFCT-VN----ALPETTADIVVFD 374
+K+ + +P A V+ ++ + K+NST C +N L E D V+ D
Sbjct 1127 MKHKVHPDTQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILD 1186
Query 375 EISMATNYDLSVVNARLR-AKHYVYIGDPAQLP--APRTLLTKGTLEPEYFNSVCRLMKT 431
E A+ + V LR ++ +GD QLP G LE F + C
Sbjct 1187 E---ASQISMPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPE 1243
Query 432 IGPDMFLGTCRRCPAEIVDTVSALVYDNKLK 462
++ L R C +IV + L+YDNKLK
Sbjct 1244 SVAELTL-QYRMC-GDIVTLSNFLIYDNKLK 1272
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) OX=284812 GN=sen1 PE=1 SV=1
Length=1687
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/244 (27%), Positives = 104/244 (43%), Gaps = 43/244 (18%)
Query 371 VVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSV-CRLM 429
V+ DE + A D +++ R AK + +GDP QLP T+L+K Y S+ R+
Sbjct 1375 VIIDEAAQAVELD-TIIPLRYGAKKCILVGDPNQLPP--TVLSKKAASLNYSQSLFVRIQ 1431
Query 430 KTIGPDM-FLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFY------------ 476
K M L R +I S YD++L+ + + + ++++
Sbjct 1432 KNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQVWHVNPKFTQYRLFD 1491
Query 477 -KG-VITHDVSSAINRPQ----IGVVREFLTRNP----AWRKAVFISPYNSQ-----NAV 521
+G T + S N + + +V E L + P R V I+PY SQ A
Sbjct 1492 VRGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGV-ITPYRSQLHELRRAF 1550
Query 522 ASK-----ILGLPTQTVDSSQGSEYDYVIFT-QTTETAHSC----NVNRFNVAITRAKVG 571
K + + QTVD QG E D + F+ + + H + R NVA+TRA+
Sbjct 1551 KVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSS 1610
Query 572 ILCI 575
+L I
Sbjct 1611 LLII 1614
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis
thaliana OX=3702 GN=SDE3 PE=1 SV=1
Length=1002
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 144/388 (37%), Gaps = 100/388 (26%)
Query 280 LQGPPGTGKS----HFAIGLALYYPSARIVYTACSHAAVDALCEKAL----------KYL 325
+ GPPGTGK+ + L +AR++ A S++A D + EK L +
Sbjct 419 IHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIF 478
Query 326 PIDKCSR----IIPARARVECFDK--FK------------VNSTLEQYVFCTVNALPETT 367
++ +R I P R FD+ FK V ST +
Sbjct 479 RLNAATRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGH 538
Query 368 ADIVVFDEISMATNYD--LSVVNARLRAKHYVYIGDPAQL-------PAPRTLLTKGTLE 418
++ DE A+ + ++V N L V GDP QL A L K LE
Sbjct 539 FTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLE 598
Query 419 P----EYF-----NSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSA 469
+Y+ N V +L+K RC EI+D S L YD +L A K+ +
Sbjct 599 RLFECDYYCEGDENYVTKLVKNY----------RCHPEILDLPSKLFYDGELVASKEDTD 648
Query 470 QC-----------FKMFYKGVITHDVS-----SAINRPQIGVVREFLTRNPA-----WRK 508
F M + G+ D S NR +I V E + R A
Sbjct 649 SVLASLNFLPNKEFPMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEED 708
Query 509 AVFISPYNSQNAVASKILG------LPTQTVDSSQGSEYDYVIFTQTTET-AHS------ 555
I+PY Q ++L + +V+ QG E +I + T H+
Sbjct 709 IGVITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAY 768
Query 556 -----CNVNRFNVAITRAKVGILCIMSD 578
N RFNVAITRA + +L I+ +
Sbjct 769 CLGFLSNPRRFNVAITRA-ISLLVIIGN 795
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus
auratus OX=10036 GN=IGHMBP2 PE=1 SV=1
Length=989
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/252 (26%), Positives = 96/252 (38%), Gaps = 43/252 (17%)
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
LPE D+VV DE + A + S L+A + GD QLP P T+ K L
Sbjct 363 LPENHFDVVVVDECAQA--LEASCWIPLLKAPKCILAGDHRQLP-PTTISHKAALAGLSR 419
Query 423 NSVCRLMKTIGPDM--FLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYK--- 477
+ + RL++ G L R I S +Y +L AH + K
Sbjct 420 SLMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVAD 479
Query 478 ----------------GVITHDVSSAINRPQIGVVREFLTRNPAWRKA-------VFISP 514
G++ D + ++ G VR A A I+P
Sbjct 480 TEETSVPLLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAP 539
Query 515 YNSQ-----NAVASKILGLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNVA 564
YN Q ++++K L ++VD QG E + VI T + E R NVA
Sbjct 540 YNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVA 599
Query 565 ITRAK--VGILC 574
+TRA+ V ++C
Sbjct 600 VTRARRHVAVIC 611
>sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156
GN=rep PE=1 SV=1
Length=6857
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/178 (27%), Positives = 78/178 (44%), Gaps = 19/178 (11%)
Query 280 LQGPPGTGKSHFAIGLALYYPSA--RIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAR 337
+ GPPGTGK+ F L S+ R VY A +H V + EK +D +
Sbjct 5665 VMGPPGTGKTTFVYDTYLSKASSSNRFVYCAPTHRLVGDMDEK------VDGAVVVSAYN 5718
Query 338 ARVECFDKFKVNSTLEQY--VFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKH 395
R + V + + Y + CT N LP + +++ DE+S+ + + + + K
Sbjct 5719 DRTY---RNPVWNKDDSYGVLLCTHNTLPFIKSAVLIADEVSLIPPHVMIKI-LSMGFKK 5774
Query 396 YVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVS 453
V +GDP QL +P K + + F L++ +L C RCP +I+ S
Sbjct 5775 VVLLGDPFQL-SPVYKNHKVHFKYDTF----YLLQLATQKRYLTACYRCPPQILSAFS 5827
>sp|A0A1P8ASY1|JHS1_ARATH DNA replication ATP-dependent helicase/nuclease
JHS1 OS=Arabidopsis thaliana OX=3702 GN=JHS1 PE=2
SV=1
Length=1331
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 104/439 (24%), Positives = 171/439 (39%), Gaps = 81/439 (18%)
Query 215 TTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLN-ISDEFSSNVANYQKV- 272
+ + N+ FV H + + P+ I P ++ I E S N Q +
Sbjct 873 SVMRFNLMQLFVQNGHNIRKMIVDLEPPRFDNGSILSQDPAISYIWSEKSLNNDQRQAIL 932
Query 273 ---GMQKYSTLQGPPGTGKSHFAIGL--ALYYPSARIVYTACSHAAVDALCEK----ALK 323
+ Y+ + G PGTGK+ + AL + I+ + +++AVD L K ++
Sbjct 933 KILTAKDYALILGMPGTGKTSTMVHAVKALLIRGSSILLASYTNSAVDNLLIKLKAQGIE 992
Query 324 YLPIDKCSRIIPARARVECFDKFK------VNSTLEQYVFCT-----VNA--LPETTADI 370
+L I + + R CF + L+Q +N+ L D+
Sbjct 993 FLRIGR-DEAVHEEVRESCFSAMNMCSVEDIKKKLDQVKVVASTCLGINSPLLVNRRFDV 1051
Query 371 VVFDEISMATNYDLSV-VNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLM 429
+ DE A L V + L A +V +GD QLP P T+ E S+ R +
Sbjct 1052 CIIDE---AGQIALPVSIGPLLFASTFVLVGDHYQLP-PLVQSTEAR-ENGMGISLFRRL 1106
Query 430 KTIGPD---MFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKM---------FYK 477
P + R C I++ +AL+Y ++L + A + + K
Sbjct 1107 SEAHPQAISVLQNQYRMCRG-IMELSNALIYGDRLCCGSAEVADATLVLSTSSSTSPWLK 1165
Query 478 GVI--THDV---------------SSAINRPQ----IGVVREFLTRNPAWRKAV-FISPY 515
V+ T V +AIN P I + E L N K + I+PY
Sbjct 1166 KVLEPTRTVVFVNTDMLRAFEARDQNAINNPVEASIIAEIVEELVNNGVDSKDIGIITPY 1225
Query 516 NSQNAVASKILGLPT-----QTVDSSQGSEYDYVI--FTQTTETAHSC------NVNRFN 562
NSQ ++ +PT T+D QG + D ++ F ++ E S + +R N
Sbjct 1226 NSQASLIQH--AIPTTPVEIHTIDKYQGRDKDCILVSFVRSREKPRSSASSLLGDWHRIN 1283
Query 563 VAITRAKVGILCIMSDRDL 581
VA+TRAK ++ + S R L
Sbjct 1284 VALTRAKKKLIMVGSQRTL 1302
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=2E4.130 PE=3
SV=1
Length=1093
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 93/447 (21%), Positives = 166/447 (37%), Gaps = 110/447 (25%)
Query 224 YFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGP 283
+ L H V APT + + GL P LN +S +A ++V S +QGP
Sbjct 427 FHKLLGHEVQ--VAPTKITMPKKFHVPGL-PELN-----ASQIAAIKQVLSNPLSLIQGP 478
Query 284 PGTGKSHFAIGLALY---YPSARIVYTACSHAAVDALC---------------------E 319
PGTGK+ + + + +++++ A S+ AVD LC E
Sbjct 479 PGTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVE 538
Query 320 KALKYLPIDKCSRIIPARARVECFDKFKVN----STLEQYVFCTVNALPE----TTADIV 371
++ +L + + R+ ++ K K S+ ++ F + E AD+V
Sbjct 539 SSVSFLALHEQVRMNTTNKELDGLVKLKTETGELSSQDEKRFKQLTRQAEREILQNADVV 598
Query 372 --------------------VFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTL 411
+ DE + + + ++ L K V +GD QL P +
Sbjct 599 CCTCVGAGDPRLSKMKFRNVLIDESTQSAEPEC-MIPLVLGCKQVVLVGDHKQL-GPVIM 656
Query 412 ---LTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKS 468
K L F + +L T P R P + + S + Y+ L+ +
Sbjct 657 NKKAAKAGLNQSLFERLVKLQFT--PIRLKVQYRMHPC-LSEFPSNMFYEGSLQNGVTAA 713
Query 469 AQCFK-------------MFYKGVITHDVSSA----INRPQIGVVREFLTR------NPA 505
+ K MF+ + ++S++ +NR + V + +TR PA
Sbjct 714 ERLRKDVDFPWPVPETPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPA 773
Query 506 WRKAVFISPYNSQNAVASKILG------------LPTQTVDSSQGSEYDYVIFT-----Q 548
I+PY Q + + + +VD+ QG E D+++ + +
Sbjct 774 --DIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNE 831
Query 549 TTETAHSCNVNRFNVAITRAKVGILCI 575
+ R NVA+TRAK G++ I
Sbjct 832 NQGIGFLSDPRRLNVALTRAKYGLVII 858
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium
discoideum OX=44689 GN=DDB_G0274399 PE=3 SV=1
Length=967
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 102/241 (42%), Gaps = 39/241 (16%)
Query 369 DIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVC-R 427
DIV+ DE + A +++ + K V +GDP QLPA T+++ ++ +Y S+ R
Sbjct 586 DIVIIDEAAQAVETS-TLIPIQHGCKKVVLVGDPKQLPA--TIISPLAIKYKYDQSLFQR 642
Query 428 LMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKM----FYKGVITHD 483
L + P M L T R + I S Y + L + ++ F+ ++ +D
Sbjct 643 LQEKNSPHM-LTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRATHYHSNPFFGPLVFYD 701
Query 484 VS-SAINRPQIGVV-----------------REFLTRNPAWRKAVFISPYNSQNAVASKI 525
+S S +P G V + + + A R + ISPY Q +I
Sbjct 702 LSWSTETKPGGGSVFNEHECKMAMYLFQLFTKVYPDEDFASRIGI-ISPYRQQVLALREI 760
Query 526 L----GLPTQTVDSSQGSEYDYVIFT-------QTTETAHSCNVNRFNVAITRAKVGILC 574
G+ TVD QG E + +IF+ + +V R NVA+TR + +L
Sbjct 761 FKNYPGISIDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLI 820
Query 575 I 575
+
Sbjct 821 L 821
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens
OX=9606 GN=SETX PE=1 SV=4
Length=2677
Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/242 (25%), Positives = 95/242 (39%), Gaps = 45/242 (19%)
Query 392 RAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSV----CRLMK--------TIGPDMFLG 439
R + +GDP QLP T+++ E Y S+ CRL++ + P + L
Sbjct 2198 RCNKLILVGDPKQLPP--TVISMKAQEYGYDQSMMARFCRLLEENVEHNMISRLPILQLT 2255
Query 440 TCRRCPAEIVDTVSALVYDNKLKAHKDKSA---------QCFKMFY--KGVITHDVSSAI 488
R +I S VY+ LK ++ A Q + +F G D S I
Sbjct 2256 VQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSDWPFQPYLVFDVGDGSERRDNDSYI 2315
Query 489 NRPQIGVVREFLT------RNPAWRKAVFISPYNSQNAVASKILG--------LPTQTVD 534
N +I +V E + ++ ++R I+ Y +Q + K L TVD
Sbjct 2316 NVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVD 2375
Query 535 SSQGSEYDYVIFTQTTETAHS------CNVNRFNVAITRAKVGILCIMSDRDLYDKLQFT 588
+ QG + D VI T + ++ R NV ITRAK + + R L + +
Sbjct 2376 AFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWN 2435
Query 589 SL 590
L
Sbjct 2436 QL 2437
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0104
PE=3 SV=1
Length=663
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 106/247 (43%), Gaps = 52/247 (21%)
Query 369 DIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRL 428
D++V DE S A + S + ++ + + GD QLP P L L+ F RL
Sbjct 396 DVIVIDEGSQAM--EPSCLIPIVKGRKLIMAGDHKQLP-PTVLSENEELKKTLFE---RL 449
Query 429 MKTIGPDM--FLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSS 486
+K P+ L R +I++ + + Y+NKLKA D+S + + ++ +
Sbjct 450 IKKY-PEFSSILEIQYRMNEKIMEFPNKMFYNNKLKA--DESVKNITLL--DLVKEEEID 504
Query 487 AINRPQI-----------GVVREFLTRNPAW-------------RKAV-------FISPY 515
++R I G+ R+ +P++ +K V I+PY
Sbjct 505 EVDRDIINEIPVQFINVEGIERKD-KESPSYYNIEEAEKVLEIVKKLVKYKIPTNVITPY 563
Query 516 NSQNAVASKI-----LGLPTQTVDSSQGSEYDYVI--FTQTTETAHSCNVNRFNVAITRA 568
++Q ++ + + TVD QG E + ++ F +T ++ R NVAITRA
Sbjct 564 DAQVRYLRRLFEEHNIDIEVNTVDGFQGRENEAIVISFVRTKNFGFLKDLRRLNVAITRA 623
Query 569 KVGILCI 575
K ++ I
Sbjct 624 KRKLILI 630
>sp|Q9BYK8|HELZ2_HUMAN 3'-5' exoribonuclease HELZ2 OS=Homo sapiens
OX=9606 GN=HELZ2 PE=1 SV=7
Length=2896
Score = 41.6 bits (96), Expect = 0.027, Method: Composition-based stats.
Identities = 28/91 (31%), Positives = 44/91 (48%), Gaps = 25/91 (27%)
Query 512 ISPYNSQNAVASKIL------GLPTQTVDSSQGSEYDYVIFTQTTETAHS---------- 555
++PYN+Q + SK L G+ ++ SQGSE+ YV+ + A S
Sbjct 2768 LTPYNAQASEISKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSW 2827
Query 556 --------CNVNRFNVAITRAKVGILCIMSD 578
+ N+ NVA+TRA+ G LC++ D
Sbjct 2828 LKKFLGFVVDPNQVNVAVTRAQEG-LCLIGD 2857
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens
OX=9606 GN=IGHMBP2 PE=1 SV=3
Length=993
Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 96/252 (38%), Gaps = 43/252 (17%)
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
LPE+ D+VV DE + A + S L+A+ + GD QLP P T+ K L
Sbjct 364 LPESYFDVVVIDECAQA--LEASCWIPLLKARKCILAGDHKQLP-PTTVSHKAALAGLSL 420
Query 423 NSVCRLMKTIGPDMF--LGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
+ + RL + G + L R I+ S +Y +L AH + +
Sbjct 421 SLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAA 480
Query 481 T----------------------HDVSSAINRPQIGVV----REFLTRNPAWRKAVFISP 514
T D S N ++ +V + + R +SP
Sbjct 481 TEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSP 540
Query 515 YNSQ-----NAVASKILGLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNVA 564
YN Q ++ + L ++VD QG E + VI + + E R NVA
Sbjct 541 YNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVA 600
Query 565 ITRAK--VGILC 574
+TRA+ V ++C
Sbjct 601 VTRARRHVAVIC 612
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
OX=559292 GN=ECM32 PE=1 SV=1
Length=1121
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (56%), Gaps = 5/63 (8%)
Query 518 QNAVASKILGLPTQTVDSSQGSEYDYVIFT---QTTETAHSC--NVNRFNVAITRAKVGI 572
QN V + I GL TVDS QG E ++IF+ TE + R NVA+TRAK G+
Sbjct 1026 QNNVINIINGLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHGL 1085
Query 573 LCI 575
+ +
Sbjct 1086 IVV 1088
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 35/69 (51%), Gaps = 4/69 (6%)
Query 280 LQGPPGTGKSH----FAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
LQGPPGTGK+ I + + + I+ A S+ A+D + EK ++ P K RI+
Sbjct 668 LQGPPGTGKTSTIEEIIIQVIERFHAFPILCVAASNIAIDNIAEKIMENRPQIKILRILS 727
Query 336 ARARVECFD 344
+ + D
Sbjct 728 KKKEQQYSD 736
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus
OX=10090 GN=Setx PE=1 SV=1
Length=2646
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 99/242 (41%), Gaps = 45/242 (19%)
Query 392 RAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSV----CRLMKT------IG--PDMFLG 439
R + +GDP QLP T+++ E Y S+ C+L++ IG P + L
Sbjct 2174 RCNKLILVGDPKQLPP--TVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLT 2231
Query 440 TCRRCPAEIVDTVSALVYDNKLKAHK-DKSAQC-----FKMFY-----KGVITHDVSSAI 488
R +I S VY+ LK ++ +S +C F+ + G D S I
Sbjct 2232 IQYRMHPDICLFPSNYVYNKNLKTNRLTESIRCSSEWPFQPYLVFDVGDGSERRDNDSYI 2291
Query 489 NRPQIGVVREFLT------RNPAWRKAVFISPYNSQNAVASKILG--------LPTQTVD 534
N +I +V E + ++ ++R I+ Y +Q + K L TVD
Sbjct 2292 NVQEIKLVMEIIKLIKEKRKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGPAEVDTVD 2351
Query 535 SSQGSEYDYVIFTQTTETAHS------CNVNRFNVAITRAKVGILCIMSDRDLYDKLQFT 588
+ QG + D +I T +A ++ R NV ITRAK + + R L + +
Sbjct 2352 AFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWY 2411
Query 589 SL 590
L
Sbjct 2412 EL 2413
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2
OS=Caenorhabditis elegans OX=6239 GN=C05C10.2 PE=3 SV=2
Length=1523
Score = 40.8 bits (94), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 84/204 (41%), Gaps = 35/204 (17%)
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMF----LGTCRRCPAEIVDTVSA 454
IGD QLP +G L+ F + + I MF L RC + + +S
Sbjct 1206 IGDIHQLPPYCEEGLEGKLKD--FGIGNTMERAIKEKMFPVCTLRNVYRCHPKTTELLSE 1263
Query 455 LVYDNKLKAHKDKSAQC--------------FKMFY---KGVITHDVSSAINRPQIGVVR 497
L YD L + + A+ F M + G T +S N + +V
Sbjct 1264 LFYDGALVSGVSELARSDFMTKRDDFWPNPKFPMMFVNNTGASTKMGTSTSNSSEKSIVG 1323
Query 498 EFLT------RNPAWRKAV-FISPYNSQNAVASKIL---GLPTQTVDSSQGSEYDYVIFT 547
E + RNP + IS Y++Q ++ ++ L G+ TVD+ QGSE + +I
Sbjct 1324 EIVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHLRGSGVKCGTVDAFQGSEKEIIIMC 1383
Query 548 QTTETAHSCN--VNRFNVAITRAK 569
T E NR NVA++RAK
Sbjct 1384 STNERISDFMQLSNRLNVAMSRAK 1407
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog
OS=Arabidopsis thaliana OX=3702 GN=UPF1 PE=1 SV=2
Length=1254
Score = 40.0 bits (92), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/119 (28%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKIL--GLPTQTVDSS 536
++T + S + QIGV+ P + +I Y ++N + L + +VDS
Sbjct 796 LVTAFLKSGVVPSQIGVI------TPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSF 849
Query 537 QGSEYDYVIFTQTTETAHSC-----NVNRFNVAITRAKVGILC-----IMSDRDLYDKL 585
QG E DY+I + H + R NVA+TRA+ GI+ ++S + L++ L
Sbjct 850 QGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGL 908
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus
OX=9913 GN=MOV10 PE=2 SV=1
Length=1003
Score = 40.0 bits (92), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 94/399 (24%), Positives = 140/399 (35%), Gaps = 108/399 (27%)
Query 282 GPPGTGKSHFAI----GLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAR 337
GPPGTGK+ + + + P A I+ A S++ D LC++ +LP + P+R
Sbjct 524 GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSR 583
Query 338 ARVECFDKFK----VNSTLEQYVFCTVNALPETTADI---------------------VV 372
+ K ++ +VF + L E I +
Sbjct 584 DIHLVPEDIKPCCNWDAKKGDFVFPSKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIF 643
Query 373 FDEISMATNYD--------LSVVNARLRAKHYVYIGDPAQL-PAPRTLLTK----GTLEP 419
DE A + + V A V GDP QL P R LT+ G
Sbjct 644 IDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLL 703
Query 420 EYFNSVCRLMKTIGPDMF--------LGTCRRCPAEIVDTVSALVYDNKLKAHKD----- 466
E + L K GPD + L R P I+D + L YD +L+A D
Sbjct 704 ERLLTFNALYKK-GPDGYNPQFITKLLRNYRSHPT-ILDVPNRLYYDGELQACADVVDRE 761
Query 467 -------KSAQCFKMFYKGVITHD-----VSSAINRPQIGVVREFLTR--NPAWRKAV-- 510
Q F + + GV+ D S N + V +L + P+ +K
Sbjct 762 RFCRWEGLPRQDFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKAR 821
Query 511 -------FISPYNSQ--------NAVASKILG------LPTQTVDSSQGSEYDYVIFTQT 549
ISPY Q + ++ G L +V+ QG E VI T
Sbjct 822 LSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERS-VILIST 880
Query 550 TETAHSC-------------NVNRFNVAITRAKVGILCI 575
++ S N RFNVA+TRAK ++ +
Sbjct 881 VRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVV 919
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=upf1
PE=3 SV=2
Length=925
Score = 40.0 bits (92), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/127 (26%), Positives = 56/127 (44%), Gaps = 25/127 (20%)
Query 474 MFYKGVITHDVSSA----INRPQIG----VVREFLTRNPAWRKAVFISPYNSQ------- 518
MFY ++S++ +NR + +V FL N + ++PY+ Q
Sbjct 675 MFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQY 734
Query 519 ---NAVASKIL--GLPTQTVDSSQGSEYDYVIFTQTTETAHSC-----NVNRFNVAITRA 568
N K L + +VD+ QG E D++I + + H + R NVA+TRA
Sbjct 735 MQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRA 794
Query 569 KVGILCI 575
K G++ +
Sbjct 795 KYGVIVL 801
>sp|E9P860|ZNFX1_CAEEL NFX1-type zinc finger-containing protein
1 homolog OS=Caenorhabditis elegans OX=6239 GN=znfx-1 PE=1
SV=1
Length=2443
Score = 40.0 bits (92), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 60/235 (26%), Positives = 94/235 (40%), Gaps = 46/235 (20%)
Query 394 KHYVYIGDPAQL---PAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVD 450
+H V IGD QL PA L L F RL++ P L R I D
Sbjct 1486 EHVVMIGDHKQLRPNPAVHELGVAYGLRISMFE---RLVERGLPFSQLRQQHRMNLTISD 1542
Query 451 TVSAL-VYDNKLKAHK-----DKSAQCFKMFYKGVITHDVS----SAINRPQI----GVV 496
+ L YDN A D +F+ + + S S +N+ +I +V
Sbjct 1543 KIVKLSFYDNVTDAENVGLYPDVQGMATNLFFWSHTSMEESPDEVSWLNKHEISMTVALV 1602
Query 497 REFLTRNPAWRKAVFISPYNSQNAVA----SKILG-------LPTQTVDSSQGSEYDYVI 545
+ L +N V ++ Y++Q + + + G +P +TVDS QG E VI
Sbjct 1603 KHLLKQNYTTNDIVVLATYSAQKNLMYREYANVFGSTPDSNVIPVETVDSFQGKERKIVI 1662
Query 546 FT---------QTTETAHSCNVNRFNVAITRAKVGILC------IMSDRDLYDKL 585
+ + T NR VA+TRA+ G+ IM++ +L++K+
Sbjct 1663 VSLVRSHRGGRENTGIGFLAVANRICVALTRAQHGMYIIGNGAYIMNNSELWNKI 1717
>sp|Q0VGT4|ZGRF1_MOUSE 5'-3' DNA helicase ZGRF1 OS=Mus musculus
OX=10090 GN=Zgrf1 PE=1 SV=2
Length=1863
Score = 39.7 bits (91), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 96/240 (40%), Gaps = 37/240 (15%)
Query 370 IVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAP---RTLLTKGTLEPEYFNSVC 426
+VV DE S T + AR + + + +GDP QLP + LE F+ +C
Sbjct 1566 VVVLDECSQMTEPASLLPIARFQCEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLC 1625
Query 427 RL----------------MKTIGPDMFL------GTCRRCPAEIVDTVSALVYDNKLKAH 464
+ + I D+F G R + +++ + L + N A
Sbjct 1626 LMGHKPVLLRTQYRCHPAISAIANDLFYEGSLVNGISERERSPVLEWLPTLCFYNVTGAE 1685
Query 465 KDKSAQCF-----KMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519
+ + F F +I ++S + IGV+ L ++ ++ +S + +
Sbjct 1686 QVERENSFVNVAEATFTLKLIQSLMASGVESCMIGVIT--LYKSQMYKICNLLSAVDVGH 1743
Query 520 AVASKILGLPTQTVDSSQGSEYDYVIFT--QTTETAHSCNVNRFNVAITRAKVGILCIMS 577
+ + TVD+ QG+E + I + +T + + R NVA+TR + +L + S
Sbjct 1744 P---DVKAVQVSTVDAFQGAEKEITILSCVRTRQVGFIDSEKRMNVALTRGRRHLLIVGS 1800
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis
elegans OX=6239 GN=smg-2 PE=1 SV=1
Length=1069
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/118 (25%), Positives = 58/118 (49%), Gaps = 16/118 (14%)
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKIL-GLPTQTVDSSQ 537
+++ + + + QIGV+ + +++ ++ ++Q + SK+ + +VD+ Q
Sbjct 750 LVSKLIKAGVQPHQIGVITSY-----EGQRSFIVNYMHTQGTLNSKLYENVEIASVDAFQ 804
Query 538 GSEYDYVIFT-----QTTETAHSCNVNRFNVAITRAKVGILC-----IMSDRDLYDKL 585
G E DY+I T + R NVAITRAK G++ +++ DL+ +L
Sbjct 805 GREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHEL 862
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease
DNA2 OS=Gallus gallus OX=9031 GN=DNA2 PE=2 SV=2
Length=992
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 76/367 (21%), Positives = 132/367 (36%), Gaps = 96/367 (26%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSA--RIVYTACSHAAVDALCEKALKY----LPIDKC 330
Y+ + G PGTGK+ L + ++ T+ +H AVD + K K+ L + +
Sbjct 612 YTLIVGMPGTGKTTTICALVRILSACGFSVLLTSFTHTAVDNILLKLAKFKVGFLRLGRA 671
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPE--------TTADIVVFDEISMATNY 382
++ P KF +V L E TA + + I + +
Sbjct 672 QKVHPD------IRKFTEEEICRSKSIKSVTDLEELYNSQPVVATACMGINHPIFVQKQF 725
Query 383 DLSVVNARLR------------AKHYVYIGDPAQLP------APRTLLTKGTLEPEYFNS 424
D +V+ + +K +V +GD QLP R L +L
Sbjct 726 DFCIVDEASQISQPICLGPLFCSKRFVLVGDHQQLPPLVQNSEARDLGMSESL------- 778
Query 425 VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDV 484
RL + + L R ++I+ + LVY+ KL+ +K +
Sbjct 779 FKRLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGSEKVS--------------- 823
Query 485 SSAINRPQIGVVR-EFLTRNPAWRKAVF-----------------------ISPYNSQNA 520
++ N P + +++ EF + W K V ISPY Q
Sbjct 824 NATANLPNLKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKAGCRPSDIGIISPYRHQLK 883
Query 521 VASKILG------LPTQTVDSSQGSEYDYVIFTQTTET------AHSCNVNRFNVAITRA 568
V + ++ + T+D QG + +I + + A + R NVAITRA
Sbjct 884 VITDLMARLKENRVEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAITRA 943
Query 569 KVGILCI 575
K ++ +
Sbjct 944 KHKLIMV 950
>sp|P30771|RENT1_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NAM7
PE=1 SV=1
Length=971
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (43%), Gaps = 13/110 (12%)
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQ--TVDSS 536
+IT + QIGV+ P + +I Y N K L + + +VD+
Sbjct 712 IITKLFRDGVKPEQIGVI------TPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAF 765
Query 537 QGSEYDYVIFTQTTETAHSC-----NVNRFNVAITRAKVGILCIMSDRDL 581
QG E DY+I + + R NV +TRAK G++ + + R L
Sbjct 766 QGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSL 815
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/122 (29%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query 224 YFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGP 283
Y+ + H V+ +S +P+E + P + SN ++ V + S +QGP
Sbjct 380 YYKILGHQVVDISFDVPLPKEFSI------PNFAQLNSSQSNAVSH--VLQRPLSLIQGP 431
Query 284 PGTGKSHFAIGLALYYPSA----RIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
PGTGK+ +Y+ S RI+ A S+ AVD L K L+ L + +R
Sbjct 432 PGTGKT-VTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAK-LRDLGLKVVRLTAKSRED 489
Query 340 VE 341
VE
Sbjct 490 VE 491
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) OX=559292 GN=SEN1 PE=1 SV=2
Length=2231
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 63/254 (25%), Positives = 95/254 (37%), Gaps = 45/254 (18%)
Query 369 DIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSV-CR 427
D V+ DE T S++ R K + +GDP QLP T+L+ +Y S+ R
Sbjct 1585 DTVIIDEACQCTELS-SIIPLRYGGKRCIMVGDPNQLPP--TVLSGAASNFKYNQSLFVR 1641
Query 428 LMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKA------------HKDKSAQCFKMF 475
+ K P + R P+ I S+ Y +LK H+ + +K F
Sbjct 1642 MEKNSSPYLLDVQYRMHPS-ISKFPSSEFYQGRLKDGPGMDILNKRPWHQLEPLAPYKFF 1700
Query 476 --YKGVITHDVS--SAINRPQIGVV--------REFLTRNPAWRKAVFISPYNSQNAVAS 523
G + S N +I V R+F + K ISPY Q
Sbjct 1701 DIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMR 1760
Query 524 KILG----------LPTQTVDSSQGSEYDYVIFT--QTTETAHSC----NVNRFNVAITR 567
K + T+D QG E + ++ + + +T S + R NVA+TR
Sbjct 1761 KEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTR 1820
Query 568 AKVGILCIMSDRDL 581
AK I + R L
Sbjct 1821 AKTSIWVLGHQRSL 1834
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/49 (35%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query 272 VGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEK 320
V + +S +QGPPGTGK+ +G+ Y+ S + A S + EK
Sbjct 1347 VSKEGFSLIQGPPGTGKTKTILGIIGYFLSTK---NASSSNVIKVPLEK 1392
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts
1 OS=Takifugu rubripes OX=31033 GN=rent1 PE=3 SV=1
Length=1097
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (44%), Gaps = 25/131 (19%)
Query 480 ITHDVSSAINRPQIGVVREFLTR----NPAWRKAVFISPYNSQ-----------NAVASK 524
I +S +NR + V + TR + I+PY Q ++ +K
Sbjct 738 IASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTK 797
Query 525 ILGLPTQTVDSSQGSEYDYVIFTQTTETAHSC-----NVNRFNVAITRAKVGILCI---- 575
+ + +VD+ QG E D++I + H + R NVA+TRAK G++ +
Sbjct 798 LYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPK 857
Query 576 -MSDRDLYDKL 585
+S + L++ L
Sbjct 858 ALSKQPLWNNL 868
>sp|Q9HCE1|MOV10_HUMAN Helicase MOV-10 OS=Homo sapiens OX=9606
GN=MOV10 PE=1 SV=2
Length=1003
Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 94/399 (24%), Positives = 139/399 (35%), Gaps = 108/399 (27%)
Query 282 GPPGTGKSHFAI----GLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAR 337
GPPGTGK+ + + + P A I+ A S++ D LC++ +LP + P+R
Sbjct 524 GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSR 583
Query 338 ARVECFDKFK----VNSTLEQYVFCTVNALPETTADI---------------------VV 372
+ K ++ +YVF L E I +
Sbjct 584 DIRMVPEDIKPCCNWDAKKGEYVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTHIF 643
Query 373 FDEISMATNYDLSVVNARLR--------AKHYVYIGDPAQL-PAPRTLLTK----GTLEP 419
DE + V A L V GDP QL P R+ LT+ G
Sbjct 644 IDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLL 703
Query 420 EYFNSVCRLMKTIGPDMF--------LGTCRRCPAEIVDTVSALVYDNKLKAHKD----- 466
E + L K GPD + L R P I+D + L Y+ +L+A D
Sbjct 704 ERLLTYNSLYKK-GPDGYDPQFITKLLRNYRSHPT-ILDIPNQLYYEGELQACADVVDRE 761
Query 467 -------KSAQCFKMFYKGVITHD-----VSSAINRPQIGVVREFLT--RNPAWRKAV-- 510
Q F + + GV+ D S N + V +L P+ +K
Sbjct 762 RFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKAR 821
Query 511 -------FISPYNSQ--------NAVASKILG------LPTQTVDSSQGSEYDYVIFTQT 549
ISPY Q + ++ G L +V+ QG E VI T
Sbjct 822 LSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERS-VILIST 880
Query 550 TETAHSC-------------NVNRFNVAITRAKVGILCI 575
++ S N RFNVA+TRAK ++ +
Sbjct 881 VRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIV 919
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium
discoideum OX=44689 GN=upf1 PE=3 SV=1
Length=1331
Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 108/259 (42%), Gaps = 43/259 (17%)
Query 371 VVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMK 430
++ DE + A+ + ++ + AK + +GD QL P LL K ++ S+ +
Sbjct 703 ILIDESTQASEPEC-LIPLMMGAKQVILVGDHRQL-GP-VLLCKKVVDAGLSQSLFERLI 759
Query 431 TIG--PDMFLGTCRRCPAEIVDTVSALVYDNKL---KAHKDKSAQCF---------KMFY 476
++G P+ R P+ + + S Y+ +L +H D+ +Q F+
Sbjct 760 SLGHHPERLTIQYRMHPS-LTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPKDPMFFF 818
Query 477 KGVITHDVSSA----INRPQIGV----VREFLTRNPAWRKAVFISPYNSQNAVASKIL-- 526
+ ++SS+ IN + + V +FL + I+PY Q A + +
Sbjct 819 NCTGSEEISSSGTSFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQK 878
Query 527 ----------GLPTQTVDSSQGSEYDYVIFTQTTETAHSC-----NVNRFNVAITRAKVG 571
+ +VDS QG E DY+I + + + R NVA+TRA+ G
Sbjct 879 SGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARFG 938
Query 572 ILCIMSDRDLYDKLQFTSL 590
++ + + + L + SL
Sbjct 939 LIILGNAKVLSKDPLWNSL 957
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/131 (26%), Positives = 54/131 (41%), Gaps = 12/131 (9%)
Query 202 KGDYGDAVVYRGTTTYK-LNVGDYFVLTSHTVMP------LSAPTLVPQEHYVRITGLYP 254
KG Y +V+R T++ + L+ F + + L P + P +++ +
Sbjct 471 KGSYRMEMVWRSTSSERILSAMKSFAIKEQALSSYLYHALLGHPDIPPAPLDIQLPTNFH 530
Query 255 TLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGK---SHFAIGLALYYPSARIVYTAC-- 309
N+ S ++ KV S +QGPPGTGK S F I + Y C
Sbjct 531 LKNLPRLNESQISAVNKVLTAPLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTP 590
Query 310 SHAAVDALCEK 320
S+ A+D L K
Sbjct 591 SNVAIDQLTGK 601
>sp|E9QAM5|HELZ2_MOUSE 3'-5' exoribonuclease HELZ2 OS=Mus musculus
OX=10090 GN=Helz2 PE=1 SV=1
Length=2947
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/95 (32%), Positives = 45/95 (47%), Gaps = 27/95 (28%)
Query 512 ISPYNSQNAVASK------ILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVN------ 559
++PYN+Q A S+ + G+ ++ SQGSE+ YVI + T T +V+
Sbjct 2819 LTPYNAQAAAISRGLMQRGVTGVTVTSITKSQGSEWRYVIVS-TVRTCPRSDVDQRPTKS 2877
Query 560 -------------RFNVAITRAKVGILCIMSDRDL 581
+ NVAITRA+ LCI+ D L
Sbjct 2878 WLKKFLGFVVDPHQVNVAITRAQEA-LCIIGDHLL 2911
>sp|A0A339|NDHK_COFAR NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic OS=Coffea arabica OX=13443 GN=ndhK PE=3 SV=1
Length=229
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query 404 QLPAPRTLL-------TKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSAL- 455
Q+P P+ ++ T G + +++V + K I D++L C P ++D ++ L
Sbjct 95 QMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLR 154
Query 456 ------VYDNKLKAHKDKSAQCFKMFYKGVITHDVSSA 487
+Y+++++ + +S +CF +K I+ +++
Sbjct 155 KKISREIYEDRIRPQRQRSNRCFTTNHKFHISRSMNTG 192
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase
A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
OX=559292 GN=HCS1 PE=1 SV=1
Length=683
Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/91 (30%), Positives = 42/91 (46%), Gaps = 10/91 (11%)
Query 257 NISDEFSSNVANYQKVGMQ-----KYSTLQGPPGTGKSHFAI----GLALYYPSARIVYT 307
NI + N+ + QK + + + GPPGTGK+ I L + P RI+
Sbjct 199 NIKSFLNPNLNDSQKTAINFAINNDLTIIHGPPGTGKTFTLIELIQQLLIKNPEERILIC 258
Query 308 ACSHAAVDALCEKALKYLPIDKCSRI-IPAR 337
S+ +VD + E+ +P + RI PAR
Sbjct 259 GPSNISVDTILERLTPLVPNNLLLRIGHPAR 289
>sp|O60306|AQR_HUMAN RNA helicase aquarius OS=Homo sapiens OX=9606
GN=AQR PE=1 SV=4
Length=1485
Score = 36.6 bits (83), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 9/102 (9%)
Query 236 SAPTLVPQEHYVRITGLYP---TLNISDEFSSNVANYQKVGMQKYSTLQ-GPPGTGKSHF 291
A TL+ + H + G YP + +F+ + GMQ T+ GPPGTGK+
Sbjct 773 EAKTLIVEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDV 832
Query 292 AIGLA--LY--YPSARIVYTACSHAAVDALCEKALKYLPIDK 329
A+ + +Y +P R + S+ A++ L EK + L ID+
Sbjct 833 AVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIMA-LDIDE 873
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (35%), Positives = 32/52 (62%), Gaps = 4/52 (8%)
Query 525 ILGLPTQ--TVDSSQGSEYDYVIFT--QTTETAHSCNVNRFNVAITRAKVGI 572
++G P + TVD QG + DY++ + +T H +V R VA++RA++G+
Sbjct 1250 LIGRPNKVTTVDRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAMSRARLGL 1301
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase
A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
OX=284812 GN=hcs1 PE=3 SV=1
Length=660
Score = 36.2 bits (82), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (59%), Gaps = 2/51 (4%)
Query 272 VGMQKYSTLQGPPGTGKSHFAIGL--ALYYPSARIVYTACSHAAVDALCEK 320
+ +++ S + GPPGTGK+H + + L + RI+ S+ AVD + ++
Sbjct 222 IAVKELSLIHGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDR 272
>sp|Q8CFQ3|AQR_MOUSE RNA helicase aquarius OS=Mus musculus OX=10090
GN=Aqr PE=1 SV=2
Length=1481
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 9/102 (9%)
Query 236 SAPTLVPQEHYVRITGLYP---TLNISDEFSSNVANYQKVGMQKYSTLQ-GPPGTGKSHF 291
A TL+ + H + G YP + +F+ + GMQ T+ GPPGTGK+
Sbjct 773 EAKTLIVEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDV 832
Query 292 AIGLA--LY--YPSARIVYTACSHAAVDALCEKALKYLPIDK 329
A+ + +Y +P R + S+ A++ L EK + L ID+
Sbjct 833 AVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIMA-LDIDE 873
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (35%), Positives = 32/52 (62%), Gaps = 4/52 (8%)
Query 525 ILGLPTQ--TVDSSQGSEYDYVIFT--QTTETAHSCNVNRFNVAITRAKVGI 572
++G P + TVD QG + DY++ + +T H +V R VA++RA++G+
Sbjct 1254 LIGRPNKVTTVDRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAMSRARLGL 1305
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
OX=284812 GN=SPBC29A10.10c PE=3 SV=1
Length=1944
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 100/270 (37%), Gaps = 65/270 (24%)
Query 371 VVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSV-CRLM 429
V+ DE + A S++ + + V +GDP QLP T+L+K + + Y S+ R+
Sbjct 1513 VIIDEAAQAVELS-SIIPLKYGCESCVMVGDPNQLPP--TVLSKTSAKFGYSQSLYVRMF 1569
Query 430 KTIGPDM-FLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAI 488
K L R EI S Y++KL + SA + +++
Sbjct 1570 KQHNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVTSRPWHED---------- 1619
Query 489 NRPQIGVVREFLTRNPAW----------RKAVFI-----------------------SPY 515
PQ+G+ R F +A FI +PY
Sbjct 1620 --PQLGIYRFFNVHGTEAFSNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVTPY 1677
Query 516 NSQ---------NAVASKILG-LPTQTVDSSQGSEYDYVIFTQTTETAHSC-----NVNR 560
SQ S I L TVD QG E D +IF+ + ++ R
Sbjct 1678 RSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRR 1737
Query 561 FNVAITRAKVGILCIMSDRDLYDKLQFTSL 590
NVA+TRAK + + + + L + F SL
Sbjct 1738 LNVALTRAKSSLYIVGNSKPLMQEDIFYSL 1767
>sp|Q86YA3|ZGRF1_HUMAN 5'-3' DNA helicase ZGRF1 OS=Homo sapiens
OX=9606 GN=ZGRF1 PE=1 SV=3
Length=2104
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 90/241 (37%), Gaps = 43/241 (18%)
Query 370 IVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAP---RTLLTKGTLEPEYFNSVC 426
+VV DE S T + AR + + +GDP QLP + LE F+ +C
Sbjct 1805 VVVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLC 1864
Query 427 RLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKL------------------------- 461
+ + L T RC I + L Y L
Sbjct 1865 LMGHK---PILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPTLCFYNVK 1921
Query 462 ---KAHKDKSAQ--CFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYN 516
+ +D S F +I ++S I IGV+ L ++ ++ +S +
Sbjct 1922 GLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSMIGVIT--LYKSQMYKLCHLLSAVD 1979
Query 517 SQNAVASKILGLPTQTVDSSQGSEYDYVIFT--QTTETAHSCNVNRFNVAITRAKVGILC 574
+ I + TVD+ QG+E + +I + +T + + R NVA+TR K +L
Sbjct 1980 FHHP---DIKTVQVSTVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGKRHLLI 2036
Query 575 I 575
+
Sbjct 2037 V 2037
>sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus (isolate Pig/United
States/SD 01-08/2001) OX=857306 PE=1 SV=2
Length=3838
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/84 (35%), Positives = 45/84 (54%), Gaps = 13/84 (15%)
Query 512 ISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVG 571
++PY+ ++ + S I T+DSSQG+ +D I T + S N +R VAITRA+ G
Sbjct 3337 LTPYH-KDRIGSAI------TIDSSQGATFD--IVTLHLPSPKSLNKSRALVAITRARHG 3387
Query 572 ILCIMSDRDLYDKLQFTSLEIPRR 595
+ D +++LQ IP R
Sbjct 3388 LFIY----DPHNQLQEFFNLIPER 3407
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus
OX=10090 GN=Mov10 PE=1 SV=2
Length=1004
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 95/401 (24%), Positives = 144/401 (36%), Gaps = 112/401 (28%)
Query 282 GPPGTGKSHFAI----GLALYYPSARIVYTACSHAAVDALCEKALKYLPI--------DK 329
GPPGTGK+ + + + P A I+ A S++ D LC++ +LP +
Sbjct 525 GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSR 584
Query 330 CSRIIPARARVEC-FDKFK------VNSTLEQY-----VFCTVNALPETTADI-----VV 372
R++P + C +D K L+QY T + L I +
Sbjct 585 DIRMVPEDIKTCCNWDAKKGEYVYPAKKHLQQYRVLITTLITASRLVSAQFPIDHFTHIF 644
Query 373 FDEISMATNYDLSVVNARLR--------AKHYVYIGDPAQL-PAPRT-LLTKGTLEPEYF 422
DE + V A L V GDP QL P R+ L K L +
Sbjct 645 IDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLG---Y 701
Query 423 NSVCRLMK-----TIGPDMF--------LGTCRRCPAEIVDTVSALVYDNKLKAHKD--- 466
+ + RL+ GP+ + L R P I+D + L YD +L+A D
Sbjct 702 SLLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPT-ILDIPNQLYYDGELQACADVVD 760
Query 467 ---------KSAQCFKMFYKGVITHD-----VSSAINRPQIGVVREFLTR--NPAWRKAV 510
Q F + + GV+ D S N + V +L + P+ +K
Sbjct 761 RERFCRWEGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGK 820
Query 511 ---------FISPYNSQ--------NAVASKILG------LPTQTVDSSQGSEYDYVIFT 547
ISPY Q + ++ G L +V+ QG E VI
Sbjct 821 ARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERS-VILI 879
Query 548 QTTETAHSC-------------NVNRFNVAITRAKVGILCI 575
T ++ S N RFNVA+TRAK ++ +
Sbjct 880 STVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVV 920
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog
OS=Drosophila melanogaster OX=7227 GN=Upf1 PE=1 SV=2
Length=1180
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/118 (25%), Positives = 58/118 (49%), Gaps = 16/118 (14%)
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILG-LPTQTVDSSQ 537
+ T + + I QIG++ + ++A + Q ++ S++ + +VD+ Q
Sbjct 756 ITTRFLKAGIKPEQIGIITPY-----EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQ 810
Query 538 GSEYDYVIFT--QTTETAHSCNVN---RFNVAITRAKVGILC-----IMSDRDLYDKL 585
G E D +I + ++ E +N R NVA+TRAK GI+ +++ + L++ L
Sbjct 811 GREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHL 868
>sp|P55500|Y4IQ_SINFN Putative insertion sequence ATP-binding
protein y4iQ/y4nD/y4sD OS=Sinorhizobium fredii (strain NBRC
101917 / NGR234) OX=394 GN=NGR_a03160 PE=3 SV=1
Length=298
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/30 (57%), Positives = 20/30 (67%), Gaps = 2/30 (7%)
Query 280 LQGPPGTGKSHF--AIGLALYYPSARIVYT 307
L GPPG GKSH AIGLAL R+++T
Sbjct 112 LFGPPGGGKSHLAAAIGLALIENGWRVLFT 141
>sp|J8HQ06|GAJB_BACC6 Gabija protein GajB OS=Bacillus cereus (strain
VD045) OX=1053225 GN=gajB PE=1 SV=1
Length=494
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query 532 TVDSSQGSEYDYVIFTQTTETAH-SCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSL 590
TV S++G E++ VI T + H + + N VA TRAK ++ IM ++ D ++
Sbjct 424 TVHSAKGLEFNQVIITASDYNVHYNRDTNEHYVATTRAKDKLIVIMDNKKYSDYIETLMK 483
Query 591 EIPRRNV 597
E+ +N+
Sbjct 484 ELKIKNI 490
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease
dna2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) OX=284812 GN=dna2 PE=1 SV=2
Length=1397
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/91 (32%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query 496 VREFLTRNPAWRKAVFISPYNSQNAVASKILG----LPTQTVDSSQGSEYDYVIFTQTTE 551
V FL R IS Y SQ + SK L + TVD QG + D ++ +
Sbjct 1225 VSSFLERGVKQSSIGIISIYKSQVELLSKNLKSFTEIEINTVDRYQGRDKDIILISFVRS 1284
Query 552 TAHSC------NVNRFNVAITRAKVGILCIM 576
+ + + +R NVA++RAKV CIM
Sbjct 1285 NSKNLVGELLRDWHRLNVALSRAKVK--CIM 1313
>sp|F1RCY6|RENT1_DANRE Regulator of nonsense transcripts 1 OS=Danio
rerio OX=7955 GN=upf1 PE=2 SV=1
Length=1100
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 34/64 (53%), Gaps = 10/64 (16%)
Query 532 TVDSSQGSEYDYVIFTQTTETAHSC-----NVNRFNVAITRAKVGILCI-----MSDRDL 581
+VD+ QG E D++I + H + R NVA+TRA+ G++ + +S + L
Sbjct 805 SVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPL 864
Query 582 YDKL 585
++ L
Sbjct 865 WNHL 868
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo
sapiens OX=9606 GN=UPF1 PE=1 SV=2
Length=1129
Score = 35.0 bits (79), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 34/64 (53%), Gaps = 10/64 (16%)
Query 532 TVDSSQGSEYDYVIFTQTTETAHSC-----NVNRFNVAITRAKVGILCI-----MSDRDL 581
+VD+ QG E D++I + H + R NVA+TRA+ G++ + +S + L
Sbjct 836 SVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPL 895
Query 582 YDKL 585
++ L
Sbjct 896 WNHL 899
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus
musculus OX=10090 GN=Upf1 PE=1 SV=2
Length=1124
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 34/64 (53%), Gaps = 10/64 (16%)
Query 532 TVDSSQGSEYDYVIFTQTTETAHSC-----NVNRFNVAITRAKVGILCI-----MSDRDL 581
+VD+ QG E D++I + H + R NVA+TRA+ G++ + +S + L
Sbjct 831 SVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPL 890
Query 582 YDKL 585
++ L
Sbjct 891 WNHL 894
>sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus (strain Lelystad) OX=11049
GN=rep PE=1 SV=3
Length=3855
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (55%), Gaps = 15/88 (17%)
Query 499 FLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNV 558
F TR A+ + ++PY+ ++ + S I T+DSSQG+ +D I T + S N
Sbjct 3343 FTTRPVAFGQV--LTPYH-KDRIGSAI------TIDSSQGATFD--IVTLHLPSPKSLNK 3391
Query 559 NRFNVAITRAKVGILCIMSDRDLYDKLQ 586
+R VAITRA+ G+ D +++LQ
Sbjct 3392 SRALVAITRARHGLFIY----DPHNQLQ 3415
>sp|P04867|TGB1_BSMV Movement protein TGB1 OS=Barley stripe mosaic
virus OX=12327 PE=1 SV=1
Length=528
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (67%), Gaps = 1/48 (2%)
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPA 407
++A+P T+D+++ DE ++A + ++ ++ RLRA + +GD AQ A
Sbjct 316 LSAVP-ITSDLLIIDEYTLAESAEILLLQRRLRASMVLLVGDVAQGKA 362
>sp|Q57749|DHPSL_METJA 7,8-dihydropterin-6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate
synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 /
JCM 10045 / NBRC 100440) OX=243232 GN=MJ0301 PE=1 SV=1
Length=294
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (44%), Gaps = 3/103 (3%)
Query 251 GLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACS 310
G++ I DE N +G+ Y G IGLA+ I+ + CS
Sbjct 152 GIFTLGEIEDEEKINFEKKPTIGL--YKLENGRVVLDNVEDEIGLAIVTEKGLIIVSGCS 209
Query 311 HAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLE 353
H + ++ +K++K I+K +I ++ D ++ ST++
Sbjct 210 HPGIVSMVKKSIKISGINKVYAVIGGFHLIDA-DNERIVSTIK 251
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin
assembly 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) OX=284812 GN=hrr1 PE=1 SV=2
Length=999
Score = 34.3 bits (77), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/27 (52%), Positives = 19/27 (70%), Gaps = 0/27 (0%)
Query 263 SSNVANYQKVGMQKYSTLQGPPGTGKS 289
SS + YQ + ++ S +QGPPGTGKS
Sbjct 374 SSQLKAYQSMLTKRLSIIQGPPGTGKS 400
>sp|P47386|Y140_MYCGE Uncharacterized ATP-dependent helicase MG140
OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775
/ NCTC 10195 / G37) OX=243273 GN=MG140 PE=3 SV=1
Length=1113
Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 61/268 (23%), Positives = 98/268 (37%), Gaps = 68/268 (25%)
Query 369 DIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTK-----------GTL 417
D VV DE S + + RA Y+ GD QL ++ G +
Sbjct 697 DYVVIDEASQV--FLERAIPILFRADKYIIAGDTKQLKPANFFQSRAEYDVDEEFEDGNI 754
Query 418 EPE-YFNSVCRLMKTIGPDMFLGTC--RRCPAEIVDTVSALVYDNKL----KAHKDKSAQ 470
E + +S+ +K + L R A+++ + +YDN+L KA+ D+
Sbjct 755 EAAVHSSSLLHFLKNRSRILTLLKFHYRSDSADLIAFTNNRIYDNELIFMNKANADQRV- 813
Query 471 CFKMFYKGVITHDVSSAI--NRPQIGVVR------EFLTRNPAWRKAVFISPYNSQNAVA 522
I HDV I N + R E LT ++K++ + +N A
Sbjct 814 --------FIVHDVIDGIWKNNRNLQEARDVVQRLEQLTTTNDYKKSLGVICFNKNQADL 865
Query 523 SKIL-----------------------GLPTQTVDSSQGSEYDYVIFTQTTE-------- 551
+ L GL + +++ QG E D +IF+ +
Sbjct 866 IEYLIDKQNNPLLNEWRERQNDVGEYEGLFVKNIENVQGDERDIIIFSLGYDRSVNSYGP 925
Query 552 TAHSCNVNRFNVAITRAKVGILCIMSDR 579
+ NR NVAITRAK I ++R
Sbjct 926 ISKQGGENRLNVAITRAKQRIELFKTNR 953
>sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus (strain HB-1) OX=300563
GN=rep PE=2 SV=3
Length=3961
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query 532 TVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLE 591
T+DSSQG+ +D V T T S N R VAITRA+ I R L +
Sbjct 3474 TIDSSQGATFDVV--TLHLPTKDSLNRQRALVAITRARHAIFVYDPHRQLQSMFDLPAKG 3531
Query 592 IP 593
P
Sbjct 3532 TP 3533
>sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus OX=28344 PE=1 SV=2
Length=3931
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query 532 TVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLE 591
T+DSSQG+ +D V T T S N R VAITRA+ I R L +
Sbjct 3444 TIDSSQGATFDVV--TLHLPTKDSLNRQRALVAITRARHAIFVYDPHRQLQSMFDLPAKG 3501
Query 592 IP 593
P
Sbjct 3502 TP 3503
>sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus (strain VR-2332) OX=300559
GN=rep PE=1 SV=2
Length=3960
Score = 33.9 bits (76), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query 532 TVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
T+DSSQG+ +D V T T S N R VAITRA+ I R L
Sbjct 3473 TIDSSQGATFDVV--TLHLPTKDSLNRQRALVAITRARHAIFVYDPHRQL 3520
>sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus (strain 16244B) OX=300561
GN=rep PE=1 SV=3
Length=3961
Score = 33.9 bits (76), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query 532 TVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
T+DSSQG+ +D V T T S N R VAITRA+ I R L
Sbjct 3474 TIDSSQGATFDVV--TLHLPTKDSLNRQRALVAITRARHAIFVYDPHRQL 3521
>sp|Q923J6|DYH12_RAT Dynein axonemal heavy chain 12 OS=Rattus
norvegicus OX=10116 GN=Dnah12 PE=2 SV=2
Length=3092
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/106 (25%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 281 QGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARV 340
+GP GTGK+ LA +V+ C L YL + K + + +
Sbjct 1250 EGPAGTGKTETTKDLAKALAVQCVVFN----------CSDGLDYLAMGKFFKGLASSGAW 1299
Query 341 ECFDKF-----KVNSTLEQYVFCTVNALPETTADIVVFDEISMATN 381
CFD+F +V S + Q + C A+ + ++ VF+ + N
Sbjct 1300 ACFDEFNRIELEVLSVVAQQILCIQRAI-QQKLEVFVFEGTELRLN 1344
>sp|B7PDC5|GATA_IXOSC Glutamyl-tRNA(Gln) amidotransferase subunit
A, mitochondrial OS=Ixodes scapularis OX=6945 GN=gatA PE=3
SV=1
Length=505
Score = 33.1 bits (74), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (53%), Gaps = 7/40 (18%)
Query 161 RELHLSWEVGKPRPPLN-------RNYVFTGYRVTKNSKV 193
RE H W+ GKPR PL+ N+ TG R T S++
Sbjct 53 RESHARWKSGKPRGPLDGVPIAVKDNFCMTGVRTTCGSRM 92
>sp|Q6D7R8|HDA_PECAS DnaA regulatory inactivator Hda OS=Pectobacterium
atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491
GN=hda PE=3 SV=1
Length=238
Score = 32.7 bits (73), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/141 (25%), Positives = 56/141 (40%), Gaps = 29/141 (21%)
Query 235 LSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIG 294
LS P +P + YP N S + N A YQ+ G Y G G+SH
Sbjct 12 LSLPLYLPDDET--FASFYPGENASLLAAVNNALYQEHG--SYIYFWSREGGGRSH---- 63
Query 295 LALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP------ARARVECFDKFKV 348
+++ AC+ + E+A+ Y+P+DK + +P + + C D +
Sbjct 64 ---------LLHAACAELSRQ---ERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIES 111
Query 349 ---NSTLEQYVFCTVNALPET 366
+ E VF N + ET
Sbjct 112 IAGDEAWEMAVFNLYNRIQET 132
Lambda K H a alpha
0.322 0.135 0.415 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 64795407156
Results from round 2
Query= YP_009725308.1 helicase [Severe acute respiratory syndrome
coronavirus 2]
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 1030 0.0
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 1028 0.0
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 1027 0.0
sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 1026 0.0
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 1026 0.0
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 988 0.0
sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 986 0.0
sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 984 0.0
sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 983 0.0
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 982 0.0
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 981 0.0
sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 980 0.0
sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 978 0.0
sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 976 0.0
sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 974 0.0
sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 974 0.0
sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 974 0.0
sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 973 0.0
sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 970 0.0
sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 970 0.0
sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 963 0.0
sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 963 0.0
sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 962 0.0
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 962 0.0
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 962 0.0
sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 957 0.0
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 956 0.0
sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 897 0.0
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 890 0.0
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 890 0.0
sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir... 265 4e-75
sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis th... 240 2e-67
sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX... 208 1e-55
sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nucle... 202 6e-54
sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11... 199 6e-53
sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus... 196 4e-52
sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis ... 194 6e-52
sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (... 180 2e-46
Sequences not found previously or not previously below threshold:
sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegi... 187 5e-49
sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus... 183 8e-48
sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens... 176 2e-45
sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog... 158 3e-39
sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nucle... 153 7e-38
sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccha... 150 9e-37
sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A1... 150 1e-36
sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog... 149 2e-36
sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (s... 149 3e-36
sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nucle... 147 7e-36
sp|P30771|RENT1_YEAST ATP-dependent helicase NAM7 OS=Saccharomyce... 147 8e-36
sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyoste... 145 3e-35
sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nucle... 145 3e-35
sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog... 143 2e-34
sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nucleas... 143 2e-34
sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caen... 142 2e-34
sp|F1RCY6|RENT1_DANRE Regulator of nonsense transcripts 1 OS=Dani... 142 3e-34
sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus ... 142 3e-34
sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo... 142 3e-34
sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nucle... 141 1e-33
sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase... 139 1e-33
sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dict... 140 2e-33
sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus OX... 140 2e-33
sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio... 140 2e-33
sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio... 140 2e-33
sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nucle... 139 3e-33
sp|Q9BXT6|M10L1_HUMAN RNA helicase Mov10l1 OS=Homo sapiens OX=960... 139 4e-33
sp|Q9HCE1|MOV10_HUMAN Helicase MOV-10 OS=Homo sapiens OX=9606 GN=... 137 2e-32
sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ010... 134 1e-31
sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus O... 134 1e-31
sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus OX=9... 134 2e-31
sp|A0A1P8ASY1|JHS1_ARATH DNA replication ATP-dependent helicase/n... 134 2e-31
sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus ... 132 8e-31
sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens ... 130 4e-30
sp|Q99MV5|M10L1_MOUSE RNA helicase Mov10l1 OS=Mus musculus OX=100... 129 6e-30
sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase... 128 8e-30
sp|Q0VGT4|ZGRF1_MOUSE 5'-3' DNA helicase ZGRF1 OS=Mus musculus OX... 128 2e-29
sp|Q86YA3|ZGRF1_HUMAN 5'-3' DNA helicase ZGRF1 OS=Homo sapiens OX... 122 1e-27
sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nucle... 118 3e-26
sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts ... 114 4e-25
sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 O... 112 1e-24
sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila mel... 107 7e-23
sp|E9QAM5|HELZ2_MOUSE 3'-5' exoribonuclease HELZ2 OS=Mus musculus... 106 2e-22
sp|Q9BYK8|HELZ2_HUMAN 3'-5' exoribonuclease HELZ2 OS=Homo sapiens... 103 1e-21
sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C1... 102 3e-21
sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS... 97.5 1e-19
sp|E9P860|ZNFX1_CAEEL NFX1-type zinc finger-containing protein 1 ... 95.9 4e-19
sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 ... 92.1 6e-18
sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 ... 91.3 1e-17
sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS... 86.7 3e-16
sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS... 84.7 1e-15
sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nucle... 81.3 1e-14
sp|Q8CFQ3|AQR_MOUSE RNA helicase aquarius OS=Mus musculus OX=1009... 80.9 2e-14
sp|O60306|AQR_HUMAN RNA helicase aquarius OS=Homo sapiens OX=9606... 80.9 2e-14
sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heteroch... 80.1 3e-14
sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrog... 69.7 6e-11
sp|P47386|Y140_MYCGE Uncharacterized ATP-dependent helicase MG140... 67.8 2e-10
sp|P75033|Y153_MYCPN Uncharacterized ATP-dependent helicase MG140... 64.7 2e-09
sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrog... 64.7 2e-09
sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprodu... 62.4 1e-08
sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reprodu... 62.0 1e-08
sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reprodu... 61.2 2e-08
sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reprodu... 61.2 2e-08
sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reprodu... 61.2 2e-08
sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reprodu... 59.7 7e-08
sp|Q306W8|POLN_EEEV8 Polyprotein P1234 OS=Eastern equine encephal... 58.5 2e-07
sp|Q4QXJ8|POLN_EEEVF Polyprotein P1234 OS=Eastern equine encephal... 57.0 5e-07
sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteriti... 56.6 6e-07
sp|P69514|RDRP_CGMVS Replicase large subunit OS=Cucumber green mo... 56.2 8e-07
sp|Q306W6|POLN_EEEV1 Polyprotein P1234 OS=Eastern equine encephal... 56.2 9e-07
sp|Q9J942|RDRP_TRVPP Replicase large subunit OS=Tobacco rattle vi... 54.7 2e-06
sp|P05080|194K_TRVSY Replicase large subunit OS=Tobacco rattle vi... 54.7 2e-06
sp|Q9YRB3|RDRP_NCBVS Methyltransferase/helicase/RNA-directed RNA ... 54.3 3e-06
sp|Q67724|RDRP_HASV Methyltransferase/helicase/RNA-directed RNA p... 53.5 5e-06
sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhag... 53.9 5e-06
sp|Q9WJC7|POLN_EEVVM Polyprotein P1234 OS=Venezuelan equine encep... 53.5 6e-06
sp|P13896|POLN_WEEV Polyprotein P1234 OS=Western equine encephali... 52.8 9e-06
sp|P27282|POLN_EEVVT Polyprotein P1234 OS=Venezuelan equine encep... 52.4 1e-05
sp|P36327|POLN_EEVV3 Polyprotein P1234 OS=Venezuelan equine encep... 52.0 2e-05
sp|Q5UQ92|YR530_MIMIV Uncharacterized protein R530 OS=Acanthamoeb... 51.6 2e-05
sp|P36328|POLN_EEVVP Polyprotein P1234 OS=Venezuelan equine encep... 51.6 2e-05
sp|Q9QBU0|RDRP_PMTVS Replicase large subunit OS=Potato mop-top vi... 51.6 2e-05
sp|Q8V294|POLN_EEVVC Polyprotein P1234 OS=Venezuelan equine encep... 51.6 2e-05
sp|P20127|POLR_OYMV RNA replicase polyprotein OS=Ononis yellow mo... 51.6 2e-05
sp|P17595|ALPHA_BSMV Replication protein alpha-A OS=Barley stripe... 50.5 4e-05
sp|Q86924|POLN_AURAV Polyprotein P1234 OS=Aura virus OX=44158 PE=... 50.1 6e-05
sp|P27283|POLN_SINDO Polyprotein P1234 OS=Sindbis virus subtype O... 49.7 8e-05
sp|Q08534|R1AB_BYVU Replicase polyprotein 1ab OS=Beet yellows vir... 49.7 9e-05
sp|Q89AB2|RECD_BUCBP RecBCD enzyme subunit RecD OS=Buchnera aphid... 48.5 1e-04
sp|Q00020|1A_BBMV Replication protein 1a OS=Broad bean mottle vir... 48.5 2e-04
sp|Q05983|RDRP_RBDVR Methyltransferase/helicase/RNA-directed RNA ... 48.5 2e-04
sp|Q83044|R1A_LIYV9 Replicase polyprotein 1a OS=Lettuce infectiou... 48.5 2e-04
sp|Q83045|R1AB_LIYV9 Replicase polyprotein 1ab OS=Lettuce infecti... 48.5 2e-04
sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian hep... 47.8 4e-04
sp|P32270|DDA_BPT4 ATP-dependent DNA helicase dda OS=Enterobacter... 47.0 4e-04
sp|Q84133|RDRP_ORSVS Replicase large subunit OS=Odontoglossum rin... 47.4 4e-04
sp|Q89249|RDRP_SBWMN Replicase large subunit OS=Soil-borne wheat ... 47.4 4e-04
sp|O71188|R1A_GLRV3 Replicase protein 1a OS=Grapevine leafroll-as... 47.4 4e-04
sp|O71189|R1AB_GLRV3 Replicase polyprotein 1ab OS=Grapevine leafr... 47.4 4e-04
sp|P03317|POLN_SINDV Polyprotein P1234 OS=Sindbis virus OX=11034 ... 47.4 5e-04
sp|Q58914|Y1519_METJA Uncharacterized protein MJ1519 OS=Methanoca... 46.6 7e-04
sp|P89659|RDRP_ORSVC Replicase large subunit OS=Odontoglossum rin... 46.6 8e-04
sp|P28726|1A_PSVJ Replication protein 1a OS=Peanut stunt virus (s... 46.2 9e-04
sp|P87515|POLN_BFV Polyprotein P1234 OS=Barmah forest virus OX=11... 46.2 9e-04
sp|Q84687|RDRP_PCV87 Replicase large subunit OS=Peanut clump viru... 44.7 0.003
sp|Q65674|TGB1_BNYVS Movement protein TGB1 OS=Beet necrotic yello... 43.9 0.003
sp|P08411|POLN_SFV Polyprotein P1234 OS=Semliki forest virus OX=1... 44.3 0.003
sp|Q9RT63|RECD2_DEIRA ATP-dependent RecD2 DNA helicase OS=Deinoco... 43.9 0.004
sp|P45612|UVRD_MYCCT Probable DNA helicase II homolog OS=Mycoplas... 43.5 0.006
sp|P90211|RDRP_TMOB Replicase large subunit OS=Tobamovirus Ob OX=... 43.5 0.006
sp|P03588|1A_BMV Replication protein 1a OS=Brome mosaic virus OX=... 43.5 0.006
sp|P27752|1A_CCMV Replication protein 1a OS=Cowpea chlorotic mott... 43.1 0.007
sp|Q64962|RDRP_ASPVP RNA replication polyprotein OS=Apple stem pi... 43.1 0.008
sp|P35928|POLR_ELV RNA replicase polyprotein OS=Erysimum latent v... 43.1 0.008
sp|Q5XXP4|POLN_CHIK3 Polyprotein P1234 OS=Chikungunya virus (stra... 43.1 0.008
sp|Q66121|1A_CMVIX Replication protein 1a OS=Cucumber mosaic viru... 42.8 0.009
sp|Q83943|1A_OLV2I Replication protein 1a OS=Olive latent virus 2... 42.4 0.014
sp|Q58889|PRS2_METJA Putative 26S proteasome regulatory subunit h... 41.6 0.016
sp|Q1KZ59|POLG_CILVC RNA replication protein OS=Citrus leprosis v... 42.4 0.016
sp|Q8QZ73|POLN_MAYAB Polyprotein P1234 OS=Mayaro virus (strain Br... 42.0 0.018
sp|Q8QL53|POLN_SLDV Polyprotein P1234 OS=Sleeping disease virus O... 42.0 0.018
sp|Q0IE10|UVRB_SYNS3 UvrABC system protein B OS=Synechococcus sp.... 41.6 0.020
sp|P39369|YJHR_ECOLI Putative uncharacterized protein YjhR OS=Esc... 41.2 0.023
sp|Q8JUX6|POLN_CHIKS Polyprotein P1234 OS=Chikungunya virus (stra... 41.2 0.030
sp|Q04610|POLN_HEVMY Non-structural polyprotein pORF1 OS=Hepatiti... 41.2 0.033
sp|Q8K9A8|RECD_BUCAP RecBCD enzyme subunit RecD OS=Buchnera aphid... 40.8 0.038
sp|O40976|1A_CMVNT Replication protein 1a OS=Cucumber mosaic viru... 40.8 0.044
sp|P17769|1A_CMVFN Replication protein 1a OS=Cucumber mosaic viru... 40.8 0.044
sp|Q8JJX1|POLN_SPDV Polyprotein P1234 OS=Salmon pancreas disease ... 40.4 0.057
sp|P17965|RDRP_PVMR RNA replication polyprotein OS=Potato virus M... 40.4 0.061
sp|O90368|POLN_ONNVS Polyprotein P1234 OS=O'nyong-nyong virus (st... 40.4 0.062
sp|F4J0C0|AATPA_ARATH AAA-ATPase At3g28600 OS=Arabidopsis thalian... 40.1 0.064
sp|P04867|TGB1_BSMV Movement protein TGB1 OS=Barley stripe mosaic... 40.1 0.066
sp|P20122|1A_CMVO Replication protein 1a OS=Cucumber mosaic virus... 40.1 0.067
sp|Q971T7|RGYR1_SULTO Reverse gyrase 1 OS=Sulfurisphaera tokodaii... 40.1 0.071
sp|P06011|1A_CMVQ Replication protein 1a OS=Cucumber mosaic virus... 39.7 0.081
sp|P22706|TRAI2_ECOLX Multifunctional conjugation protein TraI OS... 39.7 0.096
sp|Q12039|HMI1_YEAST ATP-dependent DNA helicase HMI1, mitochondri... 39.3 0.11
sp|P29098|RDRP_PMMVS Replicase large subunit OS=Pepper mild mottl... 39.7 0.11
sp|P89657|RDRP_PMMVJ Replicase large subunit OS=Pepper mild mottl... 39.3 0.12
sp|P13887|POLN_RRVN Polyprotein P1234 OS=Ross river virus (strain... 39.3 0.13
sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=M... 39.3 0.13
sp|J8HQ06|GAJB_BACC6 Gabija protein GajB OS=Bacillus cereus (stra... 38.9 0.14
sp|Q9YKD6|RDRP_TOMS1 Replicase large subunit OS=Tomato mosaic vir... 38.9 0.16
sp|P89202|RDRP_SHMV Replicase large subunit OS=Sunn-hemp mosaic v... 38.9 0.16
sp|O90370|POLN_ONNVI Polyprotein P1234 OS=O'nyong-nyong virus (st... 38.9 0.18
sp|Q83270|1A_CMVII Replication protein 1a OS=Cucumber mosaic viru... 38.5 0.20
sp|A0A0S2T050|RDRP_TBRFV Replicase large subunit OS=Tomato brown ... 38.5 0.20
sp|Q8RY16|PEX6_ARATH Peroxisomal ATPase PEX6 OS=Arabidopsis thali... 38.5 0.20
sp|P13886|POLN_ONNVG Polyprotein P1234 OS=O'nyong-nyong virus (st... 38.5 0.21
sp|P14565|TRAI1_ECOLI Multifunctional conjugation protein TraI OS... 38.5 0.24
sp|P46343|PHOL_BACSU PhoH-like protein OS=Bacillus subtilis (stra... 37.7 0.28
sp|Q0W257|PAN_METAR Proteasome-activating nucleotidase OS=Methano... 37.7 0.29
sp|P33424|POLN_HEVPA Non-structural polyprotein pORF1 OS=Hepatiti... 37.7 0.35
sp|Q81862|POLN_HEVCH Non-structural polyprotein pORF1 OS=Hepatiti... 37.7 0.35
sp|Q9LJJ5|AATPB_ARATH AAA-ATPase At3g28610 OS=Arabidopsis thalian... 37.4 0.36
sp|Q74M79|RGYRB_NANEQ Reverse gyrse subunit B OS=Nanoarchaeum equ... 37.7 0.36
sp|Q67704|RDRP_GVAIS RNA replication protein OS=Grapevine virus A... 37.7 0.36
sp|Q975P6|RGYR2_SULTO Reverse gyrase 2 OS=Sulfurisphaera tokodaii... 37.7 0.36
sp|A7HZ97|PNP_PARL1 Polyribonucleotide nucleotidyltransferase OS=... 37.7 0.37
sp|A5GHU1|UVRB_SYNPW UvrABC system protein B OS=Synechococcus sp.... 37.4 0.39
sp|Q97ZZ8|RGYR1_SACS2 Reverse gyrase 1 OS=Saccharolobus solfatari... 37.4 0.45
sp|Q9YLR1|POLN_HEVUS Non-structural polyprotein pORF1 OS=Hepatiti... 37.4 0.48
sp|Q6J8G2|POLN_HEVMG Non-structural polyprotein pORF1 OS=Hepatiti... 37.4 0.48
sp|F4KFX5|AATPJ_ARATH AAA-ATPase At5g40000 OS=Arabidopsis thalian... 37.0 0.51
sp|Q9YQ08|RDRP_TMVB Replicase large subunit OS=Tobacco mosaic vir... 37.4 0.52
sp|Q5Y389|POLN_GETV Polyprotein P1234 OS=Getah virus OX=59300 PE=... 37.0 0.61
sp|Q8DHC6|UVRB_THEVB UvrABC system protein B OS=Thermosynechococc... 37.0 0.65
sp|Q9FLD5|ASD_ARATH AAA-ATPase ASD, mitochondrial OS=Arabidopsis ... 36.6 0.72
sp|P9WIA3|PHOL_MYCTU PhoH-like protein OS=Mycobacterium tuberculo... 36.2 0.75
sp|P9WIA2|PHOL_MYCTO PhoH-like protein OS=Mycobacterium tuberculo... 36.2 0.75
sp|P0A5S1|PHOL_MYCBO PhoH-like protein OS=Mycobacterium bovis (st... 36.2 0.75
sp|P30738|RDRP_TMVKR Replicase large subunit OS=Tobacco mosaic vi... 36.6 0.78
sp|Q9JGL0|POLN_SAGV Polyprotein P1234 OS=Sagiyama virus OX=59303 ... 36.6 0.85
sp|Q03495|POLN_HEVME Non-structural polyprotein pORF1 OS=Hepatiti... 36.6 0.87
sp|O93058|RDRP_TMVOM Replicase large subunit OS=Tobacco mosaic vi... 36.6 0.88
sp|P03586|RDRP_TMV Replicase large subunit OS=Tobacco mosaic viru... 36.6 0.88
sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm O... 36.6 0.91
sp|Q9IVZ9|POLN_HEVCT Non-structural polyprotein pORF1 OS=Hepatiti... 36.2 1.0
sp|A7ZF27|EFTS_CAMC1 Elongation factor Ts OS=Campylobacter concis... 35.8 1.1
sp|F4KID5|AATPH_ARATH AAA-ATPase At5g17750 OS=Arabidopsis thalian... 35.4 1.6
sp|P60373|RFCL_NANEQ Replication factor C large subunit OS=Nanoar... 35.4 1.8
sp|Q98745|RDRP_TMVRA Replicase large subunit OS=Tobacco mosaic vi... 35.4 1.9
sp|Q08582|RGYR1_SULAC Reverse gyrase 1 OS=Sulfolobus acidocaldari... 35.4 1.9
sp|O07635|YLAK_BACSU Uncharacterized protein YlaK OS=Bacillus sub... 35.0 2.1
sp|Q7UA24|UVRB_PARMW UvrABC system protein B OS=Parasynechococcus... 35.0 2.1
sp|B8HQA9|UVRB_CYAP4 UvrABC system protein B OS=Cyanothece sp. (s... 35.0 2.2
sp|P33561|RHO_BORBU Transcription termination factor Rho OS=Borre... 35.0 2.3
sp|Q64MX8|SYR_BACFR Arginine--tRNA ligase OS=Bacteroides fragilis... 34.7 2.8
sp|P29324|POLN_HEVBU Non-structural polyprotein pORF1 OS=Hepatiti... 34.7 3.2
sp|Q0P9V4|PIF1_CAMJE ATP-dependent DNA helicase pif1 OS=Campyloba... 34.3 3.5
sp|Q8BMU0|ZNF76_MOUSE Zinc finger protein 76 OS=Mus musculus OX=1... 34.3 3.9
sp|Q6GH21|PSTB_STAAR Phosphate import ATP-binding protein PstB OS... 33.9 4.1
sp|P69880|PSTB_STAAW Phosphate import ATP-binding protein PstB OS... 33.9 4.1
sp|Q6G9H4|PSTB_STAAS Phosphate import ATP-binding protein PstB OS... 33.9 4.1
sp|P69879|PSTB_STAAN Phosphate import ATP-binding protein PstB OS... 33.9 4.1
sp|P69878|PSTB_STAAM Phosphate import ATP-binding protein PstB OS... 33.9 4.1
sp|P69881|PSTB_STAAC Phosphate import ATP-binding protein PstB OS... 33.9 4.1
sp|Q2FYQ0|PSTB_STAA8 Phosphate import ATP-binding protein PstB OS... 33.9 4.1
sp|Q2FH51|PSTB_STAA3 Phosphate import ATP-binding protein PstB OS... 33.9 4.1
sp|Q07408|MSP4_ANAMA Major surface antigen 4 OS=Anaplasma margina... 33.9 4.2
sp|Q2YXY2|PSTB_STAAB Phosphate import ATP-binding protein PstB OS... 33.9 4.3
sp|Q9WC28|POLN_HEVHY Non-structural polyprotein pORF1 OS=Hepatiti... 34.3 4.8
sp|Q295E6|SUV3_DROPS ATP-dependent RNA helicase SUV3 homolog, mit... 33.9 6.0
sp|P45158|RECD_HAEIN RecBCD enzyme subunit RecD OS=Haemophilus in... 33.5 6.2
sp|Q8F7Y2|RUVB_LEPIN Holliday junction branch migration complex s... 33.1 6.7
sp|P61534|RUVB_LEPIC Holliday junction branch migration complex s... 33.1 6.7
sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5... 33.9 6.7
sp|Q5AGZ9|RUVB2_CANAL RuvB-like helicase 2 OS=Candida albicans (s... 33.1 7.8
sp|Q04YY5|RUVB_LEPBL Holliday junction branch migration complex s... 32.7 8.7
sp|Q04UI9|RUVB_LEPBJ Holliday junction branch migration complex s... 32.7 8.8
sp|Q7NCS3|ATPA_GLOVI ATP synthase subunit alpha OS=Gloeobacter vi... 33.1 9.2
sp|A0QS28|RECD_MYCS2 RecBCD enzyme subunit RecD OS=Mycolicibacter... 33.1 9.3
>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1
Length=7073
Score = 1030 bits (2663), Expect = 0.0, Method: Composition-based stats.
Identities = 600/601 (99%), Positives = 601/601 (100%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV
Sbjct 5302 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5361
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY
Sbjct 5362 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5421
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY
Sbjct 5422 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5481
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL
Sbjct 5482 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5541
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP
Sbjct 5542 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5601
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV
Sbjct 5602 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5661
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE
Sbjct 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5721
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI
Sbjct 5722 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 5781
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE
Sbjct 5782 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5841
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YDYVIFTQTTETAHSCNVNRFNVAITRAK+GILCIMSDRDLYDKLQFTSLEIPRRNVATL
Sbjct 5842 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEIPRRNVATL 5901
Query 601 Q 601
Q
Sbjct 5902 Q 5902
>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus
Rp3/2004 OX=349344 GN=rep PE=3 SV=1
Length=7071
Score = 1028 bits (2659), Expect = 0.0, Method: Composition-based stats.
Identities = 597/601 (99%), Positives = 601/601 (100%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV
Sbjct 5300 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5359
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY
Sbjct 5360 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5419
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY
Sbjct 5420 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5479
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLN+GDYFVLTSHTVMPLSAPTL
Sbjct 5480 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNIGDYFVLTSHTVMPLSAPTL 5539
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP
Sbjct 5540 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5599
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV
Sbjct 5600 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5659
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE
Sbjct 5660 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5719
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK+KSAQCFKMFYKGVI
Sbjct 5720 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGVI 5779
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE
Sbjct 5780 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5839
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YDYVIFTQTTETAHSCNVNRFNVAITRAK+GILCIMSDRDLYDKLQFTSLE+PRRNVATL
Sbjct 5840 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATL 5899
Query 601 Q 601
Q
Sbjct 5900 Q 5900
>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus
279/2005 OX=389167 GN=rep PE=3 SV=1
Length=7079
Score = 1027 bits (2656), Expect = 0.0, Method: Composition-based stats.
Identities = 597/601 (99%), Positives = 600/601 (99%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV
Sbjct 5308 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5367
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYCK HKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY
Sbjct 5368 TQLYLGGMSYYCKLHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5427
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY
Sbjct 5428 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5487
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL
Sbjct 5488 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5547
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP
Sbjct 5548 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5607
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV
Sbjct 5608 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5667
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE
Sbjct 5668 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5727
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK+KSAQCFKMFYKGVI
Sbjct 5728 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGVI 5787
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE
Sbjct 5788 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5847
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YDYVIFTQTTETAHSCNVNRFNVAITRAK+GILCIMSDRDLYDKLQFTSLE+PRRNVATL
Sbjct 5848 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATL 5907
Query 601 Q 601
Q
Sbjct 5908 Q 5908
>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1
SV=1
Length=7096
Score = 1026 bits (2654), Expect = 0.0, Method: Composition-based stats.
Identities = 601/601 (100%), Positives = 601/601 (100%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV
Sbjct 5325 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5384
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY
Sbjct 5385 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5444
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY
Sbjct 5445 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5504
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL
Sbjct 5505 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5564
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP
Sbjct 5565 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 5624
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV
Sbjct 5625 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5684
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE
Sbjct 5685 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5744
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI
Sbjct 5745 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 5804
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE
Sbjct 5805 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5864
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL
Sbjct 5865 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 5924
Query 601 Q 601
Q
Sbjct 5925 Q 5925
>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus
HKU3 OX=442736 GN=rep PE=3 SV=1
Length=7067
Score = 1026 bits (2653), Expect = 0.0, Method: Composition-based stats.
Identities = 594/601 (99%), Positives = 601/601 (100%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV
Sbjct 5296 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5355
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY
Sbjct 5356 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5415
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDREL+LSWEVGKPRPPLNRNY
Sbjct 5416 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELYLSWEVGKPRPPLNRNY 5475
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL
Sbjct 5476 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 5535
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQEHYVRITGLYPTLNIS+EFSSNVANYQK+GMQKYSTLQGPPGTGKSHFAIGLALYYP
Sbjct 5536 VPQEHYVRITGLYPTLNISNEFSSNVANYQKIGMQKYSTLQGPPGTGKSHFAIGLALYYP 5595
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV
Sbjct 5596 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 5655
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE
Sbjct 5656 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 5715
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK+KSAQCFKM+YKGVI
Sbjct 5716 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMYYKGVI 5775
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE
Sbjct 5776 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 5835
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YDYVIFTQTTETAHSCNVNRFNVAITRAK+GILCIMSDRDLYDKLQFTSLE+PRRNVATL
Sbjct 5836 YDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQFTSLEVPRRNVATL 5895
Query 601 Q 601
Q
Sbjct 5896 Q 5896
>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus
HKU9 OX=694006 GN=rep PE=1 SV=1
Length=6930
Score = 988 bits (2554), Expect = 0.0, Method: Composition-based stats.
Identities = 445/601 (74%), Positives = 520/601 (87%), Gaps = 0/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VG CV+CNSQTSLRCG CIRRPFLCCKCCYDHV+ST+HKLVLSV PYVCN P CDV DV
Sbjct 5166 SVGTCVVCNSQTSLRCGGCIRRPFLCCKCCYDHVVSTTHKLVLSVTPYVCNNPSCDVADV 5225
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
TQLYLGGMSYYC+ H+PPISFPLCANGQVFGLYKN C GS +V DFN++ATCDW+N+ DY
Sbjct 5226 TQLYLGGMSYYCRDHRPPISFPLCANGQVFGLYKNICTGSPDVADFNSLATCDWSNSKDY 5285
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LANT TERLKLFAAETL+ATEE K +Y A V+EVLSDREL LSWE GK RPPLNRNY
Sbjct 5286 VLANTATERLKLFAAETLRATEENAKQAYASAVVKEVLSDRELVLSWETGKTRPPLNRNY 5345
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTG+ +TKNSKVQ+GEY FEKGDYGD V YR +TTYKL VGDYFVLTSH+V PLS+PTL
Sbjct 5346 VFTGFHITKNSKVQLGEYIFEKGDYGDVVNYRSSTTYKLQVGDYFVLTSHSVQPLSSPTL 5405
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
+PQE Y ++ GLYP +N+ + F+SNV +YQ+VGM +Y+T+QGPPGTGKSH +IGLALYYP
Sbjct 5406 LPQERYTKLVGLYPAMNVPESFASNVVHYQRVGMSRYTTVQGPPGTGKSHLSIGLALYYP 5465
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SA+IVYTACSHAAVDALCEKA K LPI++CSRI+PA+ARVECF KFKVN QYVF T+
Sbjct 5466 SAKIVYTACSHAAVDALCEKAHKNLPINRCSRIVPAKARVECFSKFKVNDVGAQYVFSTI 5525
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPETTADI+V DE+SM TNYDLS++NAR+RAKH VY+GDPAQLPAPRTLLTKGTL PE
Sbjct 5526 NALPETTADILVVDEVSMCTNYDLSMINARVRAKHIVYVGDPAQLPAPRTLLTKGTLAPE 5585
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
+FNSVCRLM +GPD+FL TC RCP EIVDTVSALVYD KLKA+K + +C+K +YKG +
Sbjct 5586 HFNSVCRLMVAVGPDIFLATCYRCPKEIVDTVSALVYDKKLKANKVTTGECYKCYYKGSV 5645
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THD SSAIN+PQ+G+V+EFL +NP W+ AVFISPYNSQN+VA ++LGL TQTVDSSQGSE
Sbjct 5646 THDSSSAINKPQLGLVKEFLIKNPKWQSAVFISPYNSQNSVARRMLGLQTQTVDSSQGSE 5705
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
+DYVI+ QT++TAH+ NVNRFNVAITRAK GILC+MSD LY+ L+FT L++ +
Sbjct 5706 FDYVIYCQTSDTAHALNVNRFNVAITRAKKGILCVMSDSTLYESLEFTPLDVNDYVKPKM 5765
Query 601 Q 601
Q
Sbjct 5766 Q 5766
>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus
HKU5 OX=694008 GN=rep PE=3 SV=1
Length=7182
Score = 986 bits (2550), Expect = 0.0, Method: Composition-based stats.
Identities = 427/599 (71%), Positives = 503/599 (84%), Gaps = 0/599 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T HK+VLSV+PYVCNAPGCDV DV
Sbjct 5402 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCDVADV 5461
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSY+C H+P SFPLCANG VFGLYKN C GS +VT+FN +ATCDWT +GDY
Sbjct 5462 TKLYLGGMSYFCIDHRPVCSFPLCANGLVFGLYKNMCTGSPSVTEFNRLATCDWTESGDY 5521
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LANT TE LKLFAAETL+ATEE K SY IAT++E++ +REL L WE GK +PPLNRNY
Sbjct 5522 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELLLVWEAGKAKPPLNRNY 5581
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V L APT+
Sbjct 5582 VFTGYHITKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLQAPTI 5641
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
V QE YV+ITGLYPTL + +EF+++VAN+QK G K+ T+QGPPGTGKSHFAIGLA+YYP
Sbjct 5642 VNQERYVKITGLYPTLTVPEEFANHVANFQKAGFSKFVTVQGPPGTGKSHFAIGLAIYYP 5701
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+AR+VYTACSHAAVDALCEKA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F T+
Sbjct 5702 TARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDQFKVNETNSQYLFSTI 5761
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPET+ADI+V DE+SM TNYDLSV+NAR++AKH VY+GDPAQLPAPRTLLT+GTLEPE
Sbjct 5762 NALPETSADILVVDEVSMCTNYDLSVINARIKAKHIVYVGDPAQLPAPRTLLTRGTLEPE 5821
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
FNSV RLM +GPD+FL C RCP EIV+TVSALVY+NKL A K S QCFK+ YKG +
Sbjct 5822 NFNSVTRLMCNLGPDIFLSVCYRCPEEIVNTVSALVYNNKLVAKKPASGQCFKILYKGSV 5881
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THD SSAINRPQ+ V+ F+ NP W KAVFISPYNSQNAVA +LGL TQTVDSSQGSE
Sbjct 5882 THDASSAINRPQLNFVKSFIAANPNWSKAVFISPYNSQNAVARSVLGLTTQTVDSSQGSE 5941
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVAT 599
Y YVIF QT +TAH+ N+NRFNVA+TRA+ GILC+M+ + L+D L+F + + + +
Sbjct 5942 YPYVIFCQTADTAHANNINRFNVAVTRAQKGILCVMTSQALFDSLEFAEVSLNNYKLQS 6000
>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus
133/2005 OX=389230 GN=rep PE=3 SV=1
Length=7126
Score = 984 bits (2543), Expect = 0.0, Method: Composition-based stats.
Identities = 422/599 (70%), Positives = 504/599 (84%), Gaps = 0/599 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T+HK+VLSV+PYVCNAPGCDV+DV
Sbjct 5362 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATTHKMVLSVSPYVCNAPGCDVSDV 5421
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC H+P SFPLCANG VFGLYKN C GS ++ +FN +ATCDW+++GDY
Sbjct 5422 TKLYLGGMSYYCNDHRPVCSFPLCANGLVFGLYKNMCTGSSSIMEFNRLATCDWSDSGDY 5481
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LANT TE LKLFAAETL+ATEE K SY IAT++E++ +REL L WEVGK +PPLNRNY
Sbjct 5482 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELILVWEVGKSKPPLNRNY 5541
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V LSAPT+
Sbjct 5542 VFTGYHLTKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLSAPTI 5601
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
V QE Y++ITG+YPT+ + +EF+++V N+QK G KY T+QGPPGTGKSHFAIGLA+YYP
Sbjct 5602 VNQERYLKITGIYPTITVPEEFANHVVNFQKAGFSKYVTVQGPPGTGKSHFAIGLAIYYP 5661
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+ARIVYTACSHAAVDALC KA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F TV
Sbjct 5662 TARIVYTACSHAAVDALCAKAFKYLNIAKCSRIIPAKARVECYDRFKVNDTNAQYLFSTV 5721
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPE + DI+V DE+SM TNYDLS++N+R++AKH VY+GDPAQLPAPRTLLT+GTLEPE
Sbjct 5722 NALPEISVDILVVDEVSMCTNYDLSIINSRVKAKHIVYVGDPAQLPAPRTLLTRGTLEPE 5781
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
FNSV RLM +GPD+FL C RCP EIV+TVSALVY+NKL A KD S QCFK+ +KG +
Sbjct 5782 NFNSVTRLMCNLGPDIFLSVCYRCPKEIVNTVSALVYNNKLSAKKDASGQCFKILFKGSV 5841
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THD SSAINRPQ+ V+ F+ NP W KAVFISPYNSQNAVA +LGL TQTVDSSQGSE
Sbjct 5842 THDASSAINRPQLNFVKTFIAANPNWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSE 5901
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVAT 599
Y YVIF QT +TAH+ N+NRFNVA+TRA+ GILC+M+ + L+D L+F L + + +
Sbjct 5902 YPYVIFCQTADTAHANNLNRFNVAVTRAQKGILCVMTSQVLFDSLEFAELSLNNYKLQS 5960
>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus
HKU4 OX=694007 GN=rep PE=1 SV=1
Length=7119
Score = 983 bits (2542), Expect = 0.0, Method: Composition-based stats.
Identities = 422/599 (70%), Positives = 502/599 (84%), Gaps = 0/599 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T HK+VLSV+PYVCNAPGCDV+DV
Sbjct 5355 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCDVSDV 5414
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC H+P SFPLCANG VFGLYKN C GS ++ +FN +ATCDW+++GDY
Sbjct 5415 TKLYLGGMSYYCNDHRPVCSFPLCANGLVFGLYKNMCTGSSSIMEFNRLATCDWSDSGDY 5474
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LANT TE LKLFAAETL+ATEE K SY IAT++E++ +REL L WEVGK +PPLNRNY
Sbjct 5475 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELILVWEVGKSKPPLNRNY 5534
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V LSAPT+
Sbjct 5535 VFTGYHLTKNSKVQLGEYVFERIDYSDAVSYKSSTTYKLAVGDIFVLTSHSVATLSAPTI 5594
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
V QE Y++ITG+YPT+ + +EF+++V N+QK G KY T+QGPPGTGKSHFAIGLA+YYP
Sbjct 5595 VNQERYLKITGIYPTITVPEEFANHVVNFQKAGFSKYVTVQGPPGTGKSHFAIGLAIYYP 5654
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+ARIVYTACSHAAVDALCEKA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F TV
Sbjct 5655 TARIVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNDTNSQYLFSTV 5714
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPE + DI+V DE+SM TNYDLS++N+R++AKH VY+GDPAQLPAPRTLL +GTLEPE
Sbjct 5715 NALPEISVDILVVDEVSMCTNYDLSIINSRVKAKHIVYVGDPAQLPAPRTLLIRGTLEPE 5774
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
FNSV RLM +GPD+FL C RCP EIV TVSALVY+NKL A KD S QCFK+ +KG +
Sbjct 5775 NFNSVTRLMCNLGPDIFLSVCYRCPKEIVSTVSALVYNNKLSAKKDASGQCFKILFKGSV 5834
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THD SSAINRPQ+ V+ F+ NP W KAVFISPYNSQNAVA +LGL TQTVDSSQGSE
Sbjct 5835 THDASSAINRPQLNFVKTFIAANPNWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSE 5894
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVAT 599
Y YVIF QT +TAH+ N+NRFNVA+TRA+ GILC+M+ + L+D L+F L + + +
Sbjct 5895 YPYVIFCQTADTAHANNLNRFNVAVTRAQKGILCVMTSQVLFDSLEFAELSLNNYKLQS 5953
>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus
(strain 2) OX=76344 GN=rep PE=3 SV=1
Length=7124
Score = 982 bits (2538), Expect = 0.0, Method: Composition-based stats.
Identities = 404/601 (67%), Positives = 482/601 (80%), Gaps = 1/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKC YDHV+ST HK VLSV+PYVCN+PGCDV DV
Sbjct 5331 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5390
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5391 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5450
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN CTERLKLFAAET KATEE+FK Y AT+RE++SDREL LSWE+GK RPPLN+NY
Sbjct 5451 VLANECTERLKLFAAETQKATEESFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5510
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T N K +GEY F+K + + V YR TTTYKL+VGD F+LTSH V LSAPTL
Sbjct 5511 VFTGYHFTSNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPTL 5570
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQE+Y I ++ + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+YY
Sbjct 5571 VPQENYTSI-RFASVYSVPETFQNNVPNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYYC 5629
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RV+C+DKFKVN T +YVF T+
Sbjct 5630 TARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVDCYDKFKVNDTTRKYVFTTI 5689
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPE DI+V DE+SM TNY+LSV+N+R+RAKHYVYIGDPAQLPAPR LL KGTLEP
Sbjct 5690 NALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLEPR 5749
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSV +LM +GPD+FLGTC RCP EIVDTVSALVY NKLKA D S+ CFK++YKG
Sbjct 5750 YFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYHNKLKAKNDNSSMCFKVYYKGQT 5809
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
TH+ SSA+N QI ++ +FL NP+W AVFISPYNSQN VA ++LGL TQTVDS+QGSE
Sbjct 5810 THESSSAVNMQQIYLISKFLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTVDSAQGSE 5869
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YD+VI++QT ETAHS NVNRFNVAITRAK GILC+MS L++ L F++L + + N L
Sbjct 5870 YDFVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSSMQLFESLNFSTLTLDKINNPRL 5929
Query 601 Q 601
Q
Sbjct 5930 Q 5930
>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
(strain A59) OX=11142 GN=rep PE=1 SV=1
Length=7176
Score = 981 bits (2537), Expect = 0.0, Method: Composition-based stats.
Identities = 405/601 (67%), Positives = 482/601 (80%), Gaps = 1/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKC YDHV+ST HK VLSV+PYVCN+PGCDV DV
Sbjct 5383 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5442
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5443 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5502
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN CTERLKLFAAET KATEE FK Y AT+RE++SDREL LSWE+GK RPPLN+NY
Sbjct 5503 VLANECTERLKLFAAETQKATEEAFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5562
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T N K +GEY F+K + + V YR TTTYKL+VGD F+LTSH V LSAPTL
Sbjct 5563 VFTGYHFTNNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPTL 5622
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQE+Y I ++ + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+YY
Sbjct 5623 VPQENYTSI-RFASVYSVPETFQNNVPNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYYC 5681
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RV+C+DKFKVN T +YVF T+
Sbjct 5682 TARVVYTAASHAAVDALCEKAHKFLNINDCTRIVPAKVRVDCYDKFKVNDTTRKYVFTTI 5741
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPE DI+V DE+SM TNY+LSV+N+R+RAKHYVYIGDPAQLPAPR LL KGTLEP
Sbjct 5742 NALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLEPR 5801
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSV +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA D S+ CFK++YKG
Sbjct 5802 YFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNKLKAKNDNSSMCFKVYYKGQT 5861
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
TH+ SSA+N QI ++ +FL NP+W AVFISPYNSQN VA ++LGL TQTVDS+QGSE
Sbjct 5862 THESSSAVNMQQIHLISKFLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTVDSAQGSE 5921
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YD+VI++QT ETAHS NVNRFNVAITRAK GILC+MS L++ L FT+L + + N L
Sbjct 5922 YDFVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSSMQLFESLNFTTLTLDKINNPRL 5981
Query 601 Q 601
Q
Sbjct 5982 Q 5982
>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic
diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1
Length=6781
Score = 980 bits (2533), Expect = 0.0, Method: Composition-based stats.
Identities = 368/597 (62%), Positives = 443/597 (74%), Gaps = 1/597 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+ G CV+C SQT LRCG C+RRP LC KC YDHVI T+HK +L++ PYVC A C V DV
Sbjct 5028 SAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVIGTTHKFILAITPYVCCASDCGVNDV 5087
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGG+SY+C HKP ++FPLC+ G VFGLYKN+ GS +V DFN IAT DWT+ DY
Sbjct 5088 TKLYLGGLSYWCHEHKPRLAFPLCSAGNVFGLYKNSATGSPDVEDFNRIATSDWTDVSDY 5147
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN + L+LFAAET+KA EE+ K SY AT+ EV+ +EL L WEVG+P+PPLNRN
Sbjct 5148 RLANDVKDSLRLFAAETIKAKEESVKSSYACATLHEVVGPKELLLKWEVGRPKPPLNRNS 5207
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDY-GDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT Y +TKN+K QIGE+ FEK +Y DAV Y+ T T KL G FVLTSH V PL APT
Sbjct 5208 VFTCYHITKNTKFQIGEFVFEKAEYDNDAVTYKTTATTKLVPGMVFVLTSHNVQPLRAPT 5267
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
+ QE Y I L+P NI + +SS V YQ +G QK +T+QGPPG+GKSH IGL LYY
Sbjct 5268 IANQERYSTIHKLHPAFNIPEAYSSLVPYYQLIGKQKITTIQGPPGSGKSHCVIGLGLYY 5327
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIV+TACSHAAVD+LC KA DKCSRIIP RARVEC+D FK N+T QY+F T
Sbjct 5328 PGARIVFTACSHAAVDSLCVKASTAYSNDKCSRIIPQRARVECYDGFKSNNTSAQYLFST 5387
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE ADIVV DE+SM TNYDLSV+N R+ +H VY+GDP QLPAPR ++++GTLEP
Sbjct 5388 VNALPECNADIVVVDEVSMCTNYDLSVINQRISYRHVVYVGDPQQLPAPRVMISRGTLEP 5447
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
+ +N V + M + PD+FL C RCPAEIV TVS +VY+N+ S QCFK+F KG
Sbjct 5448 KDYNVVTQRMCALKPDVFLHKCYRCPAEIVRTVSEMVYENQFIPVHPDSKQCFKIFCKGN 5507
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ D S+INR Q+ VVR FL +NP W KAVFISPYNSQN VAS++LGL QTVDSSQGS
Sbjct 5508 VQVDNGSSINRRQLDVVRMFLAKNPRWSKAVFISPYNSQNYVASRLLGLQIQTVDSSQGS 5567
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRN 596
EYDYVI+ QT++TAH+ NVNRFNVAITRAK GILCIM DR L+D L+F L++
Sbjct 5568 EYDYVIYAQTSDTAHASNVNRFNVAITRAKKGILCIMCDRSLFDLLKFFELKLSDLQ 5624
>sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East
respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=rep PE=1 SV=1
Length=7078
Score = 978 bits (2529), Expect = 0.0, Method: Composition-based stats.
Identities = 427/599 (71%), Positives = 505/599 (84%), Gaps = 0/599 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
AVG+CV+C+SQTSLRCG CIRRPFLCCKCCYDHVI+T HK+VLSV+PYVCNAPGC V+DV
Sbjct 5311 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCGVSDV 5370
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSY+C H+P SFPLCANG VFGLYKN C GS ++ +FN +ATCDWT +GDY
Sbjct 5371 TKLYLGGMSYFCVDHRPVCSFPLCANGLVFGLYKNMCTGSPSIVEFNRLATCDWTESGDY 5430
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LANT TE LKLFAAETL+ATEE K SY IAT++E++ +R+L L WE GK +PPLNRNY
Sbjct 5431 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERQLLLVWEAGKSKPPLNRNY 5490
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY +TKNSKVQ+GEY FE+ DY DAV Y+ +TTYKL VGD FVLTSH+V L+APT+
Sbjct 5491 VFTGYHITKNSKVQLGEYIFERIDYSDAVSYKSSTTYKLTVGDIFVLTSHSVATLTAPTI 5550
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
V QE YV+ITGLYPT+ + +EF+S+VAN+QK G KY T+QGPPGTGKSHFAIGLA+YYP
Sbjct 5551 VNQERYVKITGLYPTITVPEEFASHVANFQKSGYSKYVTVQGPPGTGKSHFAIGLAIYYP 5610
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+AR+VYTACSHAAVDALCEKA KYL I KCSRIIPA+ARVEC+D+FKVN T QY+F T+
Sbjct 5611 TARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNETNSQYLFSTI 5670
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPET+ADI+V DE+SM TNYDLS++NAR++AKH VY+GDPAQLPAPRTLLT+GTLEPE
Sbjct 5671 NALPETSADILVVDEVSMCTNYDLSIINARIKAKHIVYVGDPAQLPAPRTLLTRGTLEPE 5730
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
FNSV RLM +GPD+FL C RCP EIV TVSALVY+NKL A K+ S QCFK+ YKG +
Sbjct 5731 NFNSVTRLMCNLGPDIFLSMCYRCPKEIVSTVSALVYNNKLLAKKELSGQCFKILYKGNV 5790
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
THD SSAINRPQ+ V+ F+T NPAW KAVFISPYNSQNAVA +LGL TQTVDSSQGSE
Sbjct 5791 THDASSAINRPQLTFVKNFITANPAWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGSE 5850
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVAT 599
Y YVIF QT +TAH+ N+NRFNVAITRA+ GILC+M+ + L++ L+FT L + +
Sbjct 5851 YQYVIFCQTADTAHANNINRFNVAITRAQKGILCVMTSQALFESLEFTELSFTNYKLQS 5909
>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus
512/2005 OX=693999 GN=rep PE=3 SV=1
Length=6793
Score = 976 bits (2522), Expect = 0.0, Method: Composition-based stats.
Identities = 364/599 (61%), Positives = 452/599 (75%), Gaps = 1/599 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+ G CV+C+SQT LRCG CIRRP LC KC YDHV+STSHK +L++ PYVC + GC V+DV
Sbjct 5039 SAGLCVVCSSQTVLRCGDCIRRPMLCTKCAYDHVVSTSHKFILAITPYVCCSSGCGVSDV 5098
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGG+SY+C HKP +SFPLC++G VFGLYKN+ GS +V DFN +AT DWT+ DY
Sbjct 5099 TKLYLGGLSYWCVDHKPRLSFPLCSSGNVFGLYKNSATGSPDVDDFNTLATSDWTDVKDY 5158
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN + L+LFAAET+KA EE+ K SY AT+ EV+ +EL L WEVGKPRPPL+RN
Sbjct 5159 KLANDVKDSLRLFAAETIKAKEESVKSSYACATIHEVVGPKELVLKWEVGKPRPPLSRNS 5218
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDY-GDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT Y +TKN+K Q+GE+TFEK DY DAV Y+ T T KL G FVLTSH V PL APT
Sbjct 5219 VFTCYHITKNTKFQVGEFTFEKLDYDNDAVSYKSTATTKLVPGMVFVLTSHNVQPLRAPT 5278
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
++ QE Y + L P NI +++S+ + YQ +G QK +T+QGPPG+GKSH IGL LY+
Sbjct 5279 IINQERYSTLHKLRPAFNIHEDYSNLIPYYQLIGKQKLTTIQGPPGSGKSHCVIGLGLYF 5338
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIV+TACSHAAVD+LC KA D+CSRIIP +AR+EC+D FK N+T QY+F T
Sbjct 5339 PGARIVFTACSHAAVDSLCVKAATAYSSDRCSRIIPQKARIECYDGFKSNNTSAQYLFST 5398
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE ADI V DE+SM TNYDLSV+N R+ +H VY+GDP QLPAPR ++T+G L P
Sbjct 5399 VNALPEVNADICVVDEVSMCTNYDLSVINQRVNYRHIVYVGDPQQLPAPRVMITRGVLVP 5458
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
E +N V R M + PD+FL C RCPAEIV+TVS +VY+N+ K +S +CFK++ +G
Sbjct 5459 EDYNVVTRRMCVLKPDIFLHKCYRCPAEIVNTVSEMVYENQFVPVKSESKECFKIYCRGN 5518
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ D S+INR Q+ VVR FL +NP W KAVFISPYNSQN VA ++LGL QTVDSSQGS
Sbjct 5519 VQVDNGSSINRRQLEVVRMFLAKNPKWAKAVFISPYNSQNYVAGRVLGLQIQTVDSSQGS 5578
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVA 598
EYDYVI+TQT++TAH+ NVNRFNVAITRAK GILCIM DR+L+D L+F L++ V
Sbjct 5579 EYDYVIYTQTSDTAHASNVNRFNVAITRAKKGILCIMCDRELFDILKFYELKLSDLQVG 5637
Score = 33.5 bits (75), Expect = 7.8, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query 509 AVFISPYNSQNAV--ASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAIT 566
I+ Y N V A + L D + +VI + +T + N NR
Sbjct 1544 GGAIANYKKSNPVLPAGNCVTLKC---DGF--ISFTFVILPKEGDTNYEKNFNRAIAKFL 1598
Query 567 RAKVGILCIMSDRDLYDKLQFTSL 590
+ K +L ++ D +++K+ S+
Sbjct 1599 KLKGSLLVVVEDSSVFNKISHASV 1622
>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus
(strain Quebec) OX=11133 GN=rep PE=3 SV=1
Length=7059
Score = 974 bits (2518), Expect = 0.0, Method: Composition-based stats.
Identities = 409/597 (69%), Positives = 489/597 (82%), Gaps = 5/597 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV
Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY
Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY
Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL
Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537
Query 241 VPQEHYV--RITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF
Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE
Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG
Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG
Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRR 595
SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + +
Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTVDKV 5891
>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus
(strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1
Length=7094
Score = 974 bits (2518), Expect = 0.0, Method: Composition-based stats.
Identities = 409/597 (69%), Positives = 489/597 (82%), Gaps = 5/597 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV
Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY
Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY
Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL
Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537
Query 241 VPQEHYV--RITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF
Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE
Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG
Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG
Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRR 595
SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + +
Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTLDKV 5891
>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus
(strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1
Length=7094
Score = 974 bits (2518), Expect = 0.0, Method: Composition-based stats.
Identities = 409/597 (69%), Positives = 489/597 (82%), Gaps = 5/597 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV
Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY
Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY
Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL
Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537
Query 241 VPQEHYV--RITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF
Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE
Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG
Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG
Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRR 595
SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + +
Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTLDKV 5891
>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus
(strain Mebus) OX=11132 GN=rep PE=3 SV=1
Length=7094
Score = 973 bits (2516), Expect = 0.0, Method: Composition-based stats.
Identities = 409/597 (69%), Positives = 489/597 (82%), Gaps = 5/597 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV
Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY
Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY
Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL
Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537
Query 241 VPQEHYV--RITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5594
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF
Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE
Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S+ CFK++YKG
Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKG 5774
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG
Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAARRVLGLQTQTVDSAQG 5834
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRR 595
SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + +
Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTVDKV 5891
>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus
OC43 OX=31631 GN=rep PE=1 SV=1
Length=7095
Score = 970 bits (2508), Expect = 0.0, Method: Composition-based stats.
Identities = 408/597 (68%), Positives = 488/597 (82%), Gaps = 5/597 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T HK VLSV+PYVCNAPGCDV DV
Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC+ HKP SF L NG VFGLYK +C GS + DFN IA+C WT+ DY
Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGLVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN CTERLKLFAAET KATEE FK SY AT++E++S+REL LSWE+GK +PPLN+NY
Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY TKN K +GEY F+K + + V YR TTTYKL+VGD FVLTSH+V LSAPTL
Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPTL 5537
Query 241 VPQEHYV--RITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y R +Y L + F +NV NYQ +GM++Y T+QGPPGTGKSH AIGLA++
Sbjct 5538 VPQENYSSIRFASVYSVL---ETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVF 5594
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RVEC+DKFK+N T +YVF
Sbjct 5595 YCTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFT 5654
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR+RAKHYVYIGDPAQLPAPR LL+KGTLE
Sbjct 5655 TINALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLE 5714
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P+YFN+V +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA + S CFK++YKG
Sbjct 5715 PKYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSLLCFKVYYKG 5774
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
V TH+ SSA+N QI ++ +FL NP W KAVFISPYNSQN A ++LGL TQTVDS+QG
Sbjct 5775 VTTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQG 5834
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRR 595
SEYDYVI++QT ETAHS NVNRFNVAITRAK GILC+MS+ L++ LQFT+L + +
Sbjct 5835 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTLDKV 5891
>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus
NL63 OX=277944 GN=rep PE=1 SV=1
Length=6729
Score = 970 bits (2507), Expect = 0.0, Method: Composition-based stats.
Identities = 364/602 (60%), Positives = 452/602 (75%), Gaps = 3/602 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
A G CV+C SQT LRCG C+R+P LC KC YDHV T HK +L++ PYVCNA GC V+DV
Sbjct 4971 AAGLCVVCGSQTVLRCGDCLRKPMLCTKCAYDHVFGTDHKFILAITPYVCNASGCGVSDV 5030
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
+LYLGG++YYC +HKP +SFPLC+ G +FGLYKN+ GS +V FN +AT DWT+ DY
Sbjct 5031 KKLYLGGLNYYCTNHKPQLSFPLCSAGNIFGLYKNSATGSLDVEVFNRLATSDWTDVRDY 5090
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN + L+LFAAET+KA EE+ K SY AT++EV+ +EL LSWE GK +PPLNRN
Sbjct 5091 KLANDVKDTLRLFAAETIKAKEESVKSSYAFATLKEVVGPKELLLSWESGKVKPPLNRNS 5150
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT ++++K+SK QIGE+ FEK +YG D V Y+ T T KL G FVLTSH V PL APT
Sbjct 5151 VFTCFQISKDSKFQIGEFIFEKVEYGSDTVTYKSTVTTKLVPGMIFVLTSHNVQPLRAPT 5210
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
+ QE Y I L+P N+SD +++ V YQ +G QK +T+QGPPG+GKSH +IGL LYY
Sbjct 5211 IANQEKYSSIYKLHPAFNVSDAYANLVPYYQLIGKQKITTIQGPPGSGKSHCSIGLGLYY 5270
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIV+ AC+HAAVD+LC KA+ IDKC+RIIPARARVEC+ FK N+T QY+F T
Sbjct 5271 PGARIVFVACAHAAVDSLCAKAMTVYSIDKCTRIIPARARVECYSGFKPNNTSAQYIFST 5330
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE ADIVV DE+SM TNYDLSV+N RL KH VY+GDP QLPAPR ++TKG +EP
Sbjct 5331 VNALPECNADIVVVDEVSMCTNYDLSVINQRLSYKHIVYVGDPQQLPAPRVMITKGVMEP 5390
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
+N V + M IGPD+FL C RCPAEIV+TVS LVY+NK K S QCFK+F+KG
Sbjct 5391 VDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKPASKQCFKVFFKGN 5450
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ D S+INR Q+ +V+ FL +NP+W KAVFISPYNSQN VAS+ LGL QTVDSSQGS
Sbjct 5451 VQVDNGSSINRKQLEIVKLFLVKNPSWSKAVFISPYNSQNYVASRFLGLQIQTVDSSQGS 5510
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVAT 599
EYDYVI+ QT++TAH+CNVNRFNVAITRAK GI C+M D+ L+D L+F ++ ++ +
Sbjct 5511 EYDYVIYAQTSDTAHACNVNRFNVAITRAKKGIFCVMCDKTLFDSLKFFEIK--HADLHS 5568
Query 600 LQ 601
Q
Sbjct 5569 SQ 5570
>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1
Length=7182
Score = 963 bits (2490), Expect = 0.0, Method: Composition-based stats.
Identities = 394/602 (65%), Positives = 484/602 (80%), Gaps = 5/602 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T+HK VLSV+PYVCNAP CDV+DV
Sbjct 5386 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5445
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5446 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5505
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN C ERLKLFAAET KATEE FK SY AT++E++SDRE+ L WE GK +PPLN+NY
Sbjct 5506 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREVILCWETGKVKPPLNKNY 5565
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T K +GEY F+K + + V YR TTTYKL++GD FVLTSH+V LSAPTL
Sbjct 5566 VFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVASLSAPTL 5625
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R + +Y ++ F +NVANYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5626 VPQENYASIRFSSVY---SVPLVFQNNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5682
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RIIPA+ RV+C+DKFK+N T +YVF
Sbjct 5683 YYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFT 5742
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR++AKHYVYIGDPAQLPAPR LL+KG+LE
Sbjct 5743 TINALPELVTDIVVVDEVSMLTNYELSVINARIKAKHYVYIGDPAQLPAPRVLLSKGSLE 5802
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P +FNS+ ++M +GPD+FLG C RCP EIV+TVSALVYDNKLKA D S+ CFK+++KG
Sbjct 5803 PRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKG 5862
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
TH+ SSA+N QI ++ +FL NP W AVFISPYNSQN VA ++LG+ TQTVDS+QG
Sbjct 5863 QTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRVLGVQTQTVDSAQG 5922
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVA 598
SEYDYVI++QT ETAHS NVNRFNVAITRAK GI C+MS+ L++ L F +L + +
Sbjct 5923 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQ 5982
Query 599 TL 600
TL
Sbjct 5983 TL 5984
>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus
229E OX=11137 GN=rep PE=1 SV=1
Length=6758
Score = 963 bits (2490), Expect = 0.0, Method: Composition-based stats.
Identities = 357/601 (59%), Positives = 449/601 (75%), Gaps = 1/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
A G CV+C SQT LRCG C+RRP LC KC YDHV T HK +L++ PYVCN GC+V DV
Sbjct 4996 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 5055
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGG++YYC HKP +SFPLC+ G VFGLYK++ +GS ++ FN ++T DW++ DY
Sbjct 5056 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 5115
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN E L+LFAAET+KA EE+ K SY AT++E++ +EL L WE GK +PPLNRN
Sbjct 5116 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 5175
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT +++TK+SK Q+GE+ FEK DYG D V Y+ T T KL G F+LTSH V PL APT
Sbjct 5176 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 5235
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
+ QE Y I L+P+ N+SD +++ V YQ +G Q+ +T+QGPPG+GKSH +IG+ +YY
Sbjct 5236 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 5295
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIV+TACSHAAVD+LC KA+ +DKC+RIIPARARVEC+ FK N+ QYVF T
Sbjct 5296 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 5355
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE ADIVV DE+SM TNYDLSV+N R+ KH VY+GDP QLPAPR L++KG +EP
Sbjct 5356 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 5415
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
+N V + M IGPD+FL C RCPAEIV+TVS LVY+NK K+ S QCFK+F +G
Sbjct 5416 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 5475
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ D S+INR Q+ VV+ F+ +N W KAVFISPYNSQN VA+++LGL TQTVDS+QGS
Sbjct 5476 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 5535
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVAT 599
EYDYVIF QT++TAH+CN NRFNVAITRAK GI CIMSDR L+D L+F + + +
Sbjct 5536 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQSES 5595
Query 600 L 600
Sbjct 5596 S 5596
>sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151
GN=rep PE=1 SV=1
Length=6684
Score = 962 bits (2488), Expect = 0.0, Method: Composition-based stats.
Identities = 368/600 (61%), Positives = 457/600 (76%), Gaps = 1/600 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
A G CV+C SQT LRCG C+RRP LC KC YDHV+ T HK ++S+ PYVC+ GC+V DV
Sbjct 4928 AAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDV 4987
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+L+LGG+SYYC +HKP +SFPLCANG VFGLYK++ VGS+ V DFN +A DWTN DY
Sbjct 4988 TKLFLGGLSYYCMNHKPQLSFPLCANGNVFGLYKSSAVGSEAVEDFNKLAVSDWTNVEDY 5047
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN E LK+FAAET+KA EE+ K Y A ++EV+ +E+ L WE K +PPLNRN
Sbjct 5048 KLANNVKESLKIFAAETVKAKEESVKSEYAYAVLKEVIGPKEIVLQWEASKTKPPLNRNS 5107
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT ++++K++K+Q+GE+ FE+ +YG D+V Y+ T+TYKL G FVLTSH V PL AP
Sbjct 5108 VFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKAPI 5167
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
LV QE Y I+ LYP NI++ +++ V YQ +G QK++T+QGPPG+GKSH IGL LYY
Sbjct 5168 LVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYY 5227
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIVYTACSHAAVDALCEKA K +D+CSRIIP R RV+C+ FK N+T QY+FCT
Sbjct 5228 PQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCT 5287
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE + DIVV DE+SM TNYDLSV+N+RL KH VY+GDP QLPAPRTL+ KG L+P
Sbjct 5288 VNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQP 5347
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
+ +N V + M T+GPD+FL C RCPAEIV TVSALVY+NK +S QCFKMF KG
Sbjct 5348 QDYNVVTKRMCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQ 5407
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ + +S+IN Q+ VV+ FL NP WRKAVFISPYNSQN VA ++LGL TQTVDS+QGS
Sbjct 5408 VQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGS 5467
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVAT 599
EYDYVI+TQT++T H+ NVNRFNVAITRAKVGILCIM DR +Y+ L F L+ + +
Sbjct 5468 EYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELKDSKIGLQA 5527
>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1
Length=7132
Score = 962 bits (2488), Expect = 0.0, Method: Composition-based stats.
Identities = 394/602 (65%), Positives = 484/602 (80%), Gaps = 5/602 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T+HK VLSV+PYVCNAP CDV+DV
Sbjct 5336 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5395
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5396 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5455
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN C ERLKLFAAET KATEE FK SY AT++E++SDRE+ L WE GK +PPLN+NY
Sbjct 5456 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREVILCWETGKVKPPLNKNY 5515
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T K +GEY F+K + + V YR TTTYKL++GD FVLTSH+V LSAPTL
Sbjct 5516 VFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVASLSAPTL 5575
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R + +Y ++ F +NVANYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5576 VPQENYASIRFSSVY---SVPLVFQNNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5632
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RIIPA+ RV+C+DKFK+N T +YVF
Sbjct 5633 YYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFT 5692
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR++AKHYVYIGDPAQLPAPR LL+KG+LE
Sbjct 5693 TINALPELVTDIVVVDEVSMLTNYELSVINARIKAKHYVYIGDPAQLPAPRVLLSKGSLE 5752
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P +FNS+ ++M +GPD+FLG C RCP EIV+TVSALVYDNKLKA D S+ CFK+++KG
Sbjct 5753 PRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKG 5812
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
TH+ SSA+N QI ++ +FL NP W AVFISPYNSQN VA ++LG+ TQTVDS+QG
Sbjct 5813 QTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRVLGVQTQTVDSAQG 5872
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVA 598
SEYDYVI++QT ETAHS NVNRFNVAITRAK GI C+MS+ L++ L F +L + +
Sbjct 5873 SEYDYVIYSQTAETAHSVNVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQ 5932
Query 599 TL 600
TL
Sbjct 5933 TL 5934
>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1
Length=7152
Score = 962 bits (2487), Expect = 0.0, Method: Composition-based stats.
Identities = 395/602 (66%), Positives = 484/602 (80%), Gaps = 5/602 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKCCYDHV++T+HK VLSV+PYVCNAP CDV+DV
Sbjct 5356 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5415
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5416 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5475
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN C ERLKLFAAET KATEE FK SY AT++E++SDRE+ L WE GK +PPLN+NY
Sbjct 5476 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREIILCWETGKVKPPLNKNY 5535
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T K +GEY F+K + + V YR TTTYKL++GD FVLTSH+V LSAPTL
Sbjct 5536 VFTGYHFTSTGKTVLGEYVFDKSELTNGVYYRATTTYKLSIGDVFVLTSHSVANLSAPTL 5595
Query 241 VPQEHY--VRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALY 298
VPQE+Y +R + +Y ++ F +NVANYQ +GM++Y T+QGPPGTGKSH AIGLA+Y
Sbjct 5596 VPQENYASIRFSSVY---SVPLLFQTNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVY 5652
Query 299 YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
Y +AR+VYTA SHAAVDALCEKA K+L I+ C+RIIPA+ RV+C+DKFK+N T +YVF
Sbjct 5653 YYTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFT 5712
Query 359 TVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLE 418
T+NALPE DIVV DE+SM TNY+LSV+NAR++AKHYVYIGDPAQLPAPR LL+KG+LE
Sbjct 5713 TINALPELVTDIVVVDEVSMLTNYELSVINARVKAKHYVYIGDPAQLPAPRVLLSKGSLE 5772
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG 478
P +FNS+ ++M +GPD+FLG C RCP EIV+TVSALVYDNKLKA D S+ CFK+++KG
Sbjct 5773 PRHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKG 5832
Query 479 VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQG 538
TH+ SSA+N QI ++ +FL NP W AVFISPYNSQN VA +ILG+ TQTVDS+QG
Sbjct 5833 QTTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRILGVQTQTVDSAQG 5892
Query 539 SEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVA 598
SEYDYVI++QT ETAHS NVNRFNVAITRAK GI C+MS+ L++ L F +L + +
Sbjct 5893 SEYDYVIYSQTAETAHSINVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQNQ 5952
Query 599 TL 600
TL
Sbjct 5953 TL 5954
>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus
(strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2
Length=6709
Score = 957 bits (2475), Expect = 0.0, Method: Composition-based stats.
Identities = 366/600 (61%), Positives = 456/600 (76%), Gaps = 1/600 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
A G CV+C SQT LRCG C+RRP LC KC YDHV+ T HK ++S+ PYVC+ GC+V DV
Sbjct 4953 AAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDV 5012
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+L+LGG+SYYC HKP +SFPLCANG VFGLYK++ VGS++V DFN +A DWTN DY
Sbjct 5013 TKLFLGGLSYYCMDHKPQLSFPLCANGNVFGLYKSSAVGSEDVEDFNKLAVSDWTNVEDY 5072
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
LAN E LK+FAAET+KA EE+ K Y A ++EV+ +E+ L WE K +PPLNRN
Sbjct 5073 KLANNVKESLKIFAAETVKAKEESVKSEYAYAILKEVIGPKEIVLQWEASKTKPPLNRNS 5132
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 239
VFT ++++K++K+Q+GE+ FE+ +YG D+V Y+ T+TYKL G FVLTSH V PL A
Sbjct 5133 VFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKATI 5192
Query 240 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 299
LV QE Y I+ LYP NI++ +++ V YQ +G QK++T+QGPPG+GKSH IGL LYY
Sbjct 5193 LVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYY 5252
Query 300 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 359
P ARIVYTACSHAAVDALCEKA K +D+CSRIIP R RV+C+ FK N+T QY+FCT
Sbjct 5253 PQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCT 5312
Query 360 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 419
VNALPE + DIVV DE+SM TNYDLSV+N+RL KH VY+GDP QLPAPRTL+ KG L+P
Sbjct 5313 VNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQP 5372
Query 420 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 479
+ +N V + + T+GPD+FL C RCPAEIV TVSALVY+NK +S QCFKMF KG
Sbjct 5373 QDYNVVTQRVCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQ 5432
Query 480 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+ + +S+IN Q+ VV+ FL NP WRKAVFISPYNSQN VA ++LGL TQTVDS+QGS
Sbjct 5433 VQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGS 5492
Query 540 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVAT 599
EYDYVI+TQT++T H+ NVNRFNVAITRAKVGILCIM DR +Y+ L F L+ + +
Sbjct 5493 EYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELKDSKIGLQA 5552
>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus
(strain JHM) OX=11144 GN=rep PE=1 SV=1
Length=7180
Score = 956 bits (2472), Expect = 0.0, Method: Composition-based stats.
Identities = 397/601 (66%), Positives = 475/601 (79%), Gaps = 1/601 (0%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+VGACV+C+SQTSLRCG+CIR+P LCCKC YDHV+ST HK VLSV+PYVCN+PGCDV DV
Sbjct 5389 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5448
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSYYC++HKP SF L NG VFGLYK +C GS + DFN IA+C WT DY
Sbjct 5449 TKLYLGGMSYYCEAHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5508
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
+LAN CTERLKLFAAET KATEE FK Y AT+RE++SDREL LSWE+GK RPPLN+NY
Sbjct 5509 VLANECTERLKLFAAETQKATEEAFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5568
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T N K +GEY F+K + + V YR TTTYKL+VGD F+LTSH V LSAPTL
Sbjct 5569 VFTGYHFTNNGKTVLGEYVFDKSELTNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPTL 5628
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
VPQE+Y + ++ + F +NV NYQ +G+++Y T+QGPPGTGKSH AIG A+YY
Sbjct 5629 VPQENYTSV-RFASAYSVPETFQNNVPNYQHIGIKRYCTVQGPPGTGKSHLAIGHAVYYC 5687
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+AR+VYTA SHAAVDALCEKA K+L I+ C+RI+PA+ RV+C+DKF VN T +YVF T+
Sbjct 5688 TARVVYTAASHAAVDALCEKAHKFLNINDCARIVPAKLRVDCYDKFNVNDTTRKYVFTTI 5747
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPE DI+V DE+SM TNY+LSV+N+R+RAKHYVYIGDPAQLPAPR LL KGTLEP
Sbjct 5748 NALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLEPR 5807
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVI 480
YFNSV +LM +GPD+FLGTC RCP EIVDTVSALVY+NKLKA D SA CFK++YKG
Sbjct 5808 YFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNKLKAKNDNSAMCFKVYYKGQT 5867
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSE 540
TH+ SSA+N QI ++ + L NP+W AVFISPYNSQN VA ++LGL TQT DS+QGS
Sbjct 5868 THESSSAVNMQQIHLISKLLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTADSAQGSA 5927
Query 541 YDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
YD+VI++QT +TAHS NVNRFNVAITRAK GILC+MS L FT+L + + N L
Sbjct 5928 YDFVIYSQTAQTAHSVNVNRFNVAITRAKKGILCVMSSMQLIGVFNFTTLTLDKINNPRL 5987
Query 601 Q 601
Q
Sbjct 5988 Q 5988
>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1
Length=6631
Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats.
Identities = 353/605 (58%), Positives = 446/605 (74%), Gaps = 9/605 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+ G CV+CNSQT LRCG CIR+PFLCCKCCYDHV+ T HK VLS+NPY+C+ PGC DV
Sbjct 4871 SCGVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQPGCGEADV 4930
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSY+C +HKP +S PL +NG VFG+Y+ C GS+NV DFN +AT +W+ Y
Sbjct 4931 TKLYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSTVEPY 4990
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN C + L+ FAAET+KATEE K + A VREVLSDREL LSWE GK RPPLNRNY
Sbjct 4991 ILANRCVDSLRRFAAETVKATEELHKQQFASAEVREVLSDRELILSWEPGKTRPPLNRNY 5050
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTG+ T+ SKVQ+G++TFEKG+ D V YR T+T KL+VGD FVLTSH V+ L APTL
Sbjct 5051 VFTGFHFTRTSKVQLGDFTFEKGEGKDVVYYRATSTAKLSVGDIFVLTSHNVVSLIAPTL 5110
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
PQ+ + R L P + + F +N+ Y VG QK +T+QGPPG+GKSHFAIGLA Y+
Sbjct 5111 CPQQTFSRFVNLRPNVMVPACFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAAYFS 5170
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
+AR+V+TACSHAAVDALCEKA K+L +D C+RI+P R ++CF KFK N T ++Y+F T+
Sbjct 5171 NARVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTIDCFSKFKANDTGKKYIFSTI 5230
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPE + DI++ DE+SM TNY+LS +N ++ ++ VY+GDPAQLPAPRTLL G+L P+
Sbjct 5231 NALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSPK 5289
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG-- 478
+N V LM + PD+FL C RCP EIVDTVS LVYD K A+ +S QCFK+
Sbjct 5290 DYNVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRQCFKVIVNNGN 5349
Query 479 -VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQ 537
+ H+ SA N Q+ V++F+ RN WR+A FISPYN+ N A ++LGL QTVDSSQ
Sbjct 5350 SDVGHESGSAYNITQLEFVKDFVCRNKEWREATFISPYNAMNQRAYRMLGLNVQTVDSSQ 5409
Query 538 GSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRD-LYDKLQFTSLEIPRRN 596
GSEYDYVIF T ++ H+ N+NRFNVA+TRAK GIL +M RD LY L+F L+ +
Sbjct 5410 GSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFIELD----S 5465
Query 597 VATLQ 601
VA+LQ
Sbjct 5466 VASLQ 5470
>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain Beaudette CK) OX=160235 GN=rep
PE=3 SV=1
Length=6629
Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats.
Identities = 349/595 (59%), Positives = 443/595 (74%), Gaps = 5/595 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+ G CV+CNSQT LRCG CIR+PFLCCKCCYDHV+ T HK VLS+NPY+C+ GC DV
Sbjct 4869 SCGVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQLGCGEADV 4928
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSY+C +HKP +S PL +NG VFG+Y+ C GS+NV DFN +AT +W+ Y
Sbjct 4929 TKLYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSIVEPY 4988
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN C++ L+ FAAET+KATEE K + A VREV SDREL LSWE GK RPPLNRNY
Sbjct 4989 ILANRCSDSLRRFAAETVKATEELHKQQFASAEVREVFSDRELILSWEPGKTRPPLNRNY 5048
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T+ SKVQ+G++TFEKG+ D V Y+ T+T KL+VGD FVLTSH V+ L APTL
Sbjct 5049 VFTGYHFTRTSKVQLGDFTFEKGEGKDVVYYKATSTAKLSVGDIFVLTSHNVVSLVAPTL 5108
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
PQ+ + R L P + + + F +N+ Y VG QK +T+QGPPG+GKSHFAIGLA+Y+
Sbjct 5109 CPQQTFSRFVNLRPNVMVPECFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAVYFS 5168
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SAR+V+TACSHAAVDALCEKA K+L +D C+RI+P R V+CF KFK N T ++Y+F T+
Sbjct 5169 SARVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTVDCFSKFKANDTGKKYIFSTI 5228
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPE + DI++ DE+SM TNY+LS +N ++ ++ VY+GDPAQLPAPRTLL G+L P+
Sbjct 5229 NALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSPK 5287
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG-- 478
+N V LM + PD+FL C RCP EIVDTVS LVYD K A+ +S +CFK+
Sbjct 5288 DYNVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGN 5347
Query 479 -VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQ 537
+ H+ SA N Q+ V++F+ RN WR+A+FISPYN+ N A ++LGL QTVDSSQ
Sbjct 5348 SDVGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSSQ 5407
Query 538 GSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRD-LYDKLQFTSLE 591
GSEYDYVIF T ++ H+ N+NRFNVA+TRAK GIL +M RD LY L+FT L+
Sbjct 5408 GSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELD 5462
>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1
SV=1
Length=6629
Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats.
Identities = 349/595 (59%), Positives = 443/595 (74%), Gaps = 5/595 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+ G CV+CNSQT LRCG CIR+PFLCCKCCYDHV+ T HK VLS+NPY+C+ GC DV
Sbjct 4869 SCGVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQLGCGEADV 4928
Query 61 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 120
T+LYLGGMSY+C +HKP +S PL +NG VFG+Y+ C GS+NV DFN +AT +W+ Y
Sbjct 4929 TKLYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSIVEPY 4988
Query 121 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 180
ILAN C++ L+ FAAET+KATEE K + A VREV SDREL LSWE GK RPPLNRNY
Sbjct 4989 ILANRCSDSLRRFAAETVKATEELHKQQFASAEVREVFSDRELILSWEPGKTRPPLNRNY 5048
Query 181 VFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTL 240
VFTGY T+ SKVQ+G++TFEKG+ D V Y+ T+T KL+VGD FVLTSH V+ L APTL
Sbjct 5049 VFTGYHFTRTSKVQLGDFTFEKGEGKDVVYYKATSTAKLSVGDIFVLTSHNVVSLVAPTL 5108
Query 241 VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP 300
PQ+ + R L P + + + F +N+ Y VG QK +T+QGPPG+GKSHFAIGLA+Y+
Sbjct 5109 CPQQTFSRFVNLRPNVMVPECFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAVYFS 5168
Query 301 SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTV 360
SAR+V+TACSHAAVDALCEKA K+L +D C+RI+P R V+CF KFK N T ++Y+F T+
Sbjct 5169 SARVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTVDCFSKFKANDTGKKYIFSTI 5228
Query 361 NALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
NALPE + DI++ DE+SM TNY+LS +N ++ ++ VY+GDPAQLPAPRTLL G+L P+
Sbjct 5229 NALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSPK 5287
Query 421 YFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKG-- 478
+N V LM + PD+FL C RCP EIVDTVS LVYD K A+ +S +CFK+
Sbjct 5288 DYNVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNGN 5347
Query 479 -VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQ 537
+ H+ SA N Q+ V++F+ RN WR+A+FISPYN+ N A ++LGL QTVDSSQ
Sbjct 5348 SDVGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSSQ 5407
Query 538 GSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRD-LYDKLQFTSLE 591
GSEYDYVIF T ++ H+ N+NRFNVA+TRAK GIL +M RD LY L+FT L+
Sbjct 5408 GSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELD 5462
>sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream
virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180
GN=rep PE=1 SV=1
Length=6872
Score = 265 bits (677), Expect = 4e-75, Method: Composition-based stats.
Identities = 69/330 (21%), Positives = 137/330 (42%), Gaps = 29/330 (9%)
Query 246 YVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIG--LALYYPSAR 303
Y + + + T++ + ++ N ++K + + GPPGTGK+ + + + P+ +
Sbjct 5617 YRKYSKIRRTIHKPRLANRHILN----TLKKATFIIGPPGTGKTTYVMKNFIDTASPANK 5672
Query 304 IVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNAL 363
+ Y A +H V ++ + ++ + ++ + +NS + + T A+
Sbjct 5673 VAYIAPTHKLVQSMDQAIWDKYNHTVSVSVVKSELNNNKYN-YPLNSATKTIMLGTPGAV 5731
Query 364 PETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFN 423
++FDE++++ + + ++ +++GDP QL P T + +L Y N
Sbjct 5732 CTHAGCTLIFDEVTLSQLNTIINAISVVKPSQVIFLGDPLQL-GPVTHMR--SLSYSYTN 5788
Query 424 SVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHD 483
L + L C RCP+ I ++ +K + D + + G
Sbjct 5789 --FPLFQFCNDSRVLSICYRCPSNI--------FNLWVKPYTDSNVRIDPHAAGGDAKII 5838
Query 484 VSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQ-TVDSSQGSEYD 542
VS + P + L RN + V + Y I+GL T+DSSQG Y
Sbjct 5839 VSDQCSNPDAYQYVQKLARNNPDK--VLLCNYK------KPIIGLENAVTIDSSQGKTYK 5890
Query 543 YVIFTQTTETAHSCNVNRFNVAITRAKVGI 572
+ I T + +NR VA++R+ I
Sbjct 5891 HTIVVLLGNTNFTQVINRAIVAMSRSTHSI 5920
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/84 (23%), Positives = 36/84 (43%), Gaps = 1/84 (1%)
Query 1 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 60
+ C C++ T C C + +C C Y+H++ T H + +VC+ +
Sbjct 5397 SASQCYFCDNATVSTCSDCTVQYPMCAHCAYEHLMLTDHTPTQVLPCHVCDQTDPRHLNH 5456
Query 61 TQLYLGGMSYYCKSHKPPISFPLC 84
T +G + C +H ++ PL
Sbjct 5457 T-FVMGTVKVACDNHVEGMALPLV 5479
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis
thaliana OX=3702 GN=SDE3 PE=1 SV=1
Length=1002
Score = 240 bits (612), Expect = 2e-67, Method: Composition-based stats.
Identities = 97/388 (25%), Positives = 142/388 (37%), Gaps = 100/388 (26%)
Query 280 LQGPPGTGKS----HFAIGLALYYPSARIVYTACSHAAVDALCEKAL----------KYL 325
+ GPPGTGK+ + L +AR++ A S++A D + EK L +
Sbjct 419 IHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIF 478
Query 326 PIDKCSR----IIPARARVECFDK--FK------------VNSTLEQYVFCTVNALPETT 367
++ +R I P R FD+ FK V ST +
Sbjct 479 RLNAATRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGH 538
Query 368 ADIVVFDEISMATNYD--LSVVNARLRAKHYVYIGDPAQL-------PAPRTLLTKGTLE 418
++ DE A+ + ++V N L V GDP QL A L K LE
Sbjct 539 FTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLE 598
Query 419 P----EYF-----NSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSA 469
+Y+ N V +L+K RC EI+D S L YD +L A K+ +
Sbjct 599 RLFECDYYCEGDENYVTKLVKN----------YRCHPEILDLPSKLFYDGELVASKEDTD 648
Query 470 QC-----------FKMFYKGVITHDVS-----SAINRPQIGVVREFLTRNPA-----WRK 508
F M + G+ D S NR +I V E + R A
Sbjct 649 SVLASLNFLPNKEFPMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEED 708
Query 509 AVFISPYNSQNAVASKILG------LPTQTVDSSQGSEYDYVIFTQTTET---------- 552
I+PY Q ++L + +V+ QG E +I + T
Sbjct 709 IGVITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAY 768
Query 553 --AHSCNVNRFNVAITRAKVGILCIMSD 578
N RFNVAITRA + +L I+ +
Sbjct 769 CLGFLSNPRRFNVAITRA-ISLLVIIGN 795
>sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus
1 OX=360393 GN=rep PE=2 SV=1
Length=6733
Score = 208 bits (528), Expect = 1e-55, Method: Composition-based stats.
Identities = 115/601 (19%), Positives = 211/601 (35%), Gaps = 101/601 (17%)
Query 4 ACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQL 63
C C + C C LC C Y HV+ +SH + + + C C D+ +L
Sbjct 5292 VCFCCPNPAVSVCEECYVPLPLCAYCYYVHVVISSHCKI--EDKFKCP---CGQDDIREL 5346
Query 64 YLGGMSYYCKSHKPPISFPLCANGQVFGLYK-NTCVGSDNVTDFNAIATCDWTNAGDYIL 122
++ + C +Y+ +CV SD + ++ +
Sbjct 5347 FIVLNNSIC-------------------IYQCRSCVESD------RLRISLLSDVDQVV- 5380
Query 123 ANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVF 182
RL F A + G+A + + + ++ L W + + +N
Sbjct 5381 ------RLPGFKANS------ASIAKNGVAQLLTPVDNVDVSLDWNHQET---VQQNVAR 5425
Query 183 TGYRVTKNSKVQIG----EYTFEKGDYGDAV----VYRGTTT-----YKLNVGDYFVLTS 229
Y +++ I ++ + D A+ ++ T YK G VL
Sbjct 5426 IVYHSANMTQMSIEVVYVNFSLVRNDGSSAILDIPNFKCPDTSYCLFYK--PGKTGVLKF 5483
Query 230 HTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQK---------VGMQKYSTL 280
L++ + ++T P N ++ Q + + +
Sbjct 5484 TGKGTLTSCYDSNNLTWFKVTC--PDFNQPWRLATCFVIQQHDAVYPPIKSTQYENVTFV 5541
Query 281 QGPPGTGKSHFAIGLAL--YYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARA 338
GPPGTGK+ F L PS R VY A +H V + EK +D +
Sbjct 5542 MGPPGTGKTTFVYNTYLSKASPSNRFVYCAPTHRLVGDMDEK------VDGAVVVSAYND 5595
Query 339 RVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVY 398
R +K + + + + CT N LP + +++ DE+S+ + + + + K V
Sbjct 5596 RTYRNPVWKKDDSYD-VLLCTHNTLPFIKSAVLIVDEVSLIPPHVMIKI-LSMGFKKVVL 5653
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
+GDP QL +P K + + F L++ +L C RCP +I+ S D
Sbjct 5654 LGDPFQL-SPVYKNHKVHFKYDTF----YLLQLATQKRYLTACYRCPPQILSAFSKPYCD 5708
Query 459 --NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYN 516
L + +K + + K + N V+ P + V + Y
Sbjct 5709 VGVDLVSFNNKPGKFDIIVSKQLA--------NMQDFSVLSVLSKEYPGY---VILVNYR 5757
Query 517 SQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIM 576
+ A + T+DSSQG+ + + S +NR V +R+ ++ +
Sbjct 5758 AAVDYAMQNGLGDVTTIDSSQGTTAANHLLVLFGASNFSKTINRVIVGCSRSTTHLVVVC 5817
Query 577 S 577
Sbjct 5818 C 5818
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease
DNA2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=DNA2 PE=1 SV=1
Length=1522
Score = 202 bits (514), Expect = 6e-54, Method: Composition-based stats.
Identities = 85/384 (22%), Positives = 138/384 (36%), Gaps = 82/384 (21%)
Query 275 QKYSTLQGPPGTGKSHFA--IGLALYYPSARIVYTACSHAAVDALCEK-----------A 321
+ Y+ + G PGTGK+ I L R++ T+ +H+AVD + K
Sbjct 1067 EDYALILGMPGTGKTTVIAEIIKILVSEGKRVLLTSYTHSAVDNILIKLRNTNISIMRLG 1126
Query 322 LKYLPIDKCSRIIPARARVECFDKF--KVNSTLEQYVFCT-VN----ALPETTADIVVFD 374
+K+ + +P A V+ ++ + K+NST C +N L E D V+ D
Sbjct 1127 MKHKVHPDTQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILD 1186
Query 375 EISMATNYDLSVVNARLRA-KHYVYIGDPAQLPA--PRTLLTKGTLEPEYFNSVCRLMKT 431
E S + + V LR ++ +GD QLP G LE F + C
Sbjct 1187 EASQIS---MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPE 1243
Query 432 IGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDK-----------------------S 468
++ L R +IV + L+YDNKLK ++ S
Sbjct 1244 SVAELTL--QYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQSLELPMPEALSRYRNESANS 1301
Query 469 AQCFKMFYKG---------------VITHDVSSAINRPQIGV----VREFLTRNPAWRKA 509
Q + + + + + N + + V L
Sbjct 1302 KQWLEDILEPTRKVVFLNYDNCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCEDI 1361
Query 510 VFISPYNSQNAVASKIL------GLPTQTVDSSQGSEYDYVIF------TQTTETAHSCN 557
++ Y +Q + KI GL T D QG + +I +Q A
Sbjct 1362 GVMTLYRAQLRLLKKIFNKNVYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGALLKE 1421
Query 558 VNRFNVAITRAKVGILCIMSDRDL 581
+ R NVA+TRAK ++ I S +
Sbjct 1422 LRRVNVAMTRAKSKLIIIGSKSTI 1445
>sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156
GN=rep PE=1 SV=1
Length=6857
Score = 199 bits (507), Expect = 6e-53, Method: Composition-based stats.
Identities = 112/595 (19%), Positives = 207/595 (35%), Gaps = 89/595 (15%)
Query 4 ACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQL 63
C C + C C LC C Y HV+ ++H V + + C C ++ +L
Sbjct 5416 VCFCCPNPAVSVCEECYVPLPLCAYCYYVHVVISNHSKV--EDKFKCF---CGQDNIREL 5470
Query 64 YL----GGMSYYCKS--HKPPISFPLCAN-GQVFGL--YKNTCVGSDNVTDFNAIATCDW 114
Y+ Y CK+ + L ++ Q+ L +K+ + + D
Sbjct 5471 YIVLNNSICMYQCKNCVESDRLRISLLSDVDQIVRLPGFKSNSASIAKNGVAQLLTSVDN 5530
Query 115 TNAG-DYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPR 173
+ D+ + + + + T+ + ++ Y T+ + ++ +
Sbjct 5531 VDVSLDWNYQESVQQNVARIVYHSANMTQMSIEVVYVSFTLVRNDGSSAIL---DIPNFK 5587
Query 174 PPLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDY--------- 224
P + +Y K K + ++T KG + T +K+ D+
Sbjct 5588 CP-DTSYCL----FYKPGKSGVLKFT-GKGTLTSCYDNKNLTWFKVTCPDFNQPWRLATC 5641
Query 225 FVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPP 284
FV+ H V +YP + + + + + GPP
Sbjct 5642 FVIQQHDV-------------------VYPPIKATQ-------------YENVTFVMGPP 5669
Query 285 GTGKSHFAIGLAL--YYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVEC 342
GTGK+ F L S R VY A +H V + EK +D + R
Sbjct 5670 GTGKTTFVYDTYLSKASSSNRFVYCAPTHRLVGDMDEK------VDGAVVVSAYNDRTYR 5723
Query 343 FDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDP 402
+ + + + CT N LP + +++ DE+S+ + + + + K V +GDP
Sbjct 5724 NPVWNKDDSYG-VLLCTHNTLPFIKSAVLIADEVSLIPPHVMIKI-LSMGFKKVVLLGDP 5781
Query 403 AQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLK 462
QL +P K + + F L++ +L C RCP +I+ S D +
Sbjct 5782 FQL-SPVYKNHKVHFKYDTF----YLLQLATQKRYLTACYRCPPQILSAFSKPYCDVGVD 5836
Query 463 AHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVA 522
+ G VS + Q V L++ V + Y + A
Sbjct 5837 LVSFNNKP-------GKFDIIVSKQLANIQDFSVLSVLSKEYPG--YVILVNYRAAVDYA 5887
Query 523 SKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMS 577
+ T+DSSQG+ + + S VNR V +R+ ++ +
Sbjct 5888 MQNGLGDVTTIDSSQGTTAANHLLVLFGASNFSKTVNRVIVGCSRSTTHLVVVCC 5942
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus
auratus OX=10036 GN=IGHMBP2 PE=1 SV=1
Length=989
Score = 196 bits (497), Expect = 4e-52, Method: Composition-based stats.
Identities = 65/257 (25%), Positives = 96/257 (37%), Gaps = 41/257 (16%)
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
LPE D+VV DE + A + S L+A + GD QLP P T+ K L
Sbjct 363 LPENHFDVVVVDECAQA--LEASCWIPLLKAPKCILAGDHRQLP-PTTISHKAALAGLSR 419
Query 423 NSVCRLMKTIGPD--MFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYK--- 477
+ + RL++ G L R I S +Y +L AH + K
Sbjct 420 SLMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVAD 479
Query 478 ----------------GVITHDVSSAINRPQIGVVREFLTRNPAWRKA-------VFISP 514
G++ D + ++ G VR A A I+P
Sbjct 480 TEETSVPLLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAP 539
Query 515 YNSQ-----NAVASKILGLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNVA 564
YN Q ++++K L ++VD QG E + VI T + E R NVA
Sbjct 540 YNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVA 599
Query 565 ITRAKVGILCIMSDRDL 581
+TRA+ + I R +
Sbjct 600 VTRARRHVAVICDSRTV 616
Score = 50.8 bits (120), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/52 (31%), Positives = 28/52 (54%), Gaps = 2/52 (4%)
Query 272 VGMQKYSTLQGPPGTGKSHFAIGLAL--YYPSARIVYTACSHAAVDALCEKA 321
+ ++ + + GPPGTGK+ + + L +I+ A S+ AVD L E+
Sbjct 203 LAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERL 254
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis
thaliana OX=3702 GN=MAA3 PE=2 SV=1
Length=818
Score = 194 bits (493), Expect = 6e-52, Method: Composition-based stats.
Identities = 84/364 (23%), Positives = 126/364 (35%), Gaps = 90/364 (25%)
Query 303 RIVYTACSHAAVDALCEKALKY-LPIDKCSRIIPARARVECFDKFKVNSTL--------- 352
R++ A S++A+D + + L L + P R+ V S
Sbjct 376 RVLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVRIGLKAHHSVASVSLDHLVAQKR 435
Query 353 --------------------------EQYVFCTVN-------ALPETTADIVVFDEISMA 379
VF T++ A D+V+ DE + A
Sbjct 436 GSAIDKPKQGTTGTDIDSIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQA 495
Query 380 TNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVC-RLMKTIGPDMFL 438
+++ R K +GDP QLPA T+++ + Y S+ RL K P L
Sbjct 496 VEP-ATLIPLATRCKQVFLVGDPKQLPA--TVISTVAQDSGYGTSMFERLQKAGYPVKML 552
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQ--------------CFKMFYKGVITHD- 483
T R EI S Y+ L+ D AQ CF ++G +
Sbjct 553 KTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQTTRDWHKYRCFGPFCFFDIHEGKESQHP 612
Query 484 --VSSAINRPQIGVV----REFLTRNPAWRKA---VFISPYNSQ------------NAVA 522
S +N ++ V +T P + + ISPYN Q A
Sbjct 613 GATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFKDRFKEMFGTEA 672
Query 523 SKILGLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNVAITRAKVGILCIMS 577
K++ + TVD QG E D IF+ + + N R NV ITRAK +L + S
Sbjct 673 EKVVDI--NTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAKSSVLVVGS 730
Query 578 DRDL 581
L
Sbjct 731 AATL 734
Score = 35.4 bits (80), Expect = 1.8, Method: Composition-based stats.
Identities = 26/119 (22%), Positives = 45/119 (38%), Gaps = 12/119 (10%)
Query 258 ISDEFSSNVANYQK----VGMQK--YSTLQGPPGTGKSHF---AIGLALYYPSARIVYTA 308
+++ F+ N+ QK VG+ + + +QGPPGTGK+ +G ++ AR+
Sbjct 250 LNEFFNENLNKSQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSILGAIMHATPARVQSKG 309
Query 309 CSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNAL-PET 366
H + + R P V D + + + N L PE
Sbjct 310 TDHEVKRGIQMTIQEKYNHWG--RASPWILGVNPRDAIMPEDGDDGFFPTSGNELKPEV 366
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus
OX=10116 GN=Ighmbp2 PE=1 SV=1
Length=988
Score = 187 bits (474), Expect = 5e-49, Method: Composition-based stats.
Identities = 63/257 (25%), Positives = 94/257 (37%), Gaps = 41/257 (16%)
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
LPE D+VV DE + A + S L+A + GD QLP P T+ K L
Sbjct 363 LPEDYFDVVVVDECAQA--LEASCWIPLLKAPKCILAGDHKQLP-PTTVSHKAALAGLSR 419
Query 423 NSVCRLMKTIGPD--MFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYK--- 477
+ + RL + G L R I S +Y +L AH + K
Sbjct 420 SLMERLAEKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVAD 479
Query 478 ----------------GVITHDVSSAINRPQIGVVREFLTRNPAWRKA-------VFISP 514
G++ + + ++ G VR A A I+P
Sbjct 480 TEETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAP 539
Query 515 YNSQ-----NAVASKILGLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNVA 564
YN Q ++++K L ++VD QG E + VI T + E R NVA
Sbjct 540 YNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVA 599
Query 565 ITRAKVGILCIMSDRDL 581
+TRA+ + I +
Sbjct 600 VTRARRHVAVICDSHTV 616
Score = 50.8 bits (120), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/52 (29%), Positives = 28/52 (54%), Gaps = 2/52 (4%)
Query 272 VGMQKYSTLQGPPGTGKSHFAIGLAL--YYPSARIVYTACSHAAVDALCEKA 321
+ ++ + + GPPGTGK+ + + L +++ A S+ AVD L E+
Sbjct 203 LAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERL 254
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus
OX=10090 GN=Ighmbp2 PE=1 SV=1
Length=993
Score = 183 bits (465), Expect = 8e-48, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 98/269 (36%), Gaps = 42/269 (16%)
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
LPE D+VV DE + A + S L+A + GD QLP P T+ + L
Sbjct 363 LPEDYFDVVVVDECAQA--LEASCWIPLLKAPKCILAGDHRQLP-PTTVSHRAALAGLSR 419
Query 423 NSVCRLMKTIGPD--MFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYK--- 477
+ + RL + G L R I+ S +Y + +H + K
Sbjct 420 SLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTD 479
Query 478 ----------------GVITHDVSSAINRPQIGVVREFLTRNPAWRKA-------VFISP 514
G++ + + ++ G VR A A I+P
Sbjct 480 TEETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAP 539
Query 515 YNSQ-----NAVASKILGLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNVA 564
YN Q ++++K L ++VD QG E + V+ T + E R NVA
Sbjct 540 YNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVA 599
Query 565 ITRAKVGILCIMSDRDLYDKLQFTSLEIP 593
+TRA+ + ++ D + F +
Sbjct 600 VTRARRHV-AVICDSHTVNNHAFLETLVD 627
Score = 50.8 bits (120), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/52 (29%), Positives = 28/52 (54%), Gaps = 2/52 (4%)
Query 272 VGMQKYSTLQGPPGTGKSHFAIGLAL--YYPSARIVYTACSHAAVDALCEKA 321
+ ++ + + GPPGTGK+ + + L +++ A S+ AVD L E+
Sbjct 203 LAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERL 254
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) OX=284812 GN=sen1 PE=1 SV=1
Length=1687
Score = 180 bits (456), Expect = 2e-46, Method: Composition-based stats.
Identities = 61/253 (24%), Positives = 101/253 (40%), Gaps = 41/253 (16%)
Query 367 TADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVC 426
V+ DE + A D +++ R AK + +GDP QLP T+L+K Y S+
Sbjct 1371 NFSTVIIDEAAQAVELD-TIIPLRYGAKKCILVGDPNQLPP--TVLSKKAASLNYSQSLF 1427
Query 427 -RLMKTIGPDM-FLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFY-------- 476
R+ K M L R +I S YD++L+ + + + ++++
Sbjct 1428 VRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQVWHVNPKFTQY 1487
Query 477 ------KGVITHDVSSAINRPQIG----VVREFLTRNPAWR---KAVFISPYNSQNAVAS 523
T + S N ++ +V E L + P + I+PY SQ
Sbjct 1488 RLFDVRGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELR 1547
Query 524 K----------ILGLPTQTVDSSQGSEYDYVIF-TQTTETAHSC----NVNRFNVAITRA 568
+ + + QTVD QG E D + F + + H + R NVA+TRA
Sbjct 1548 RAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRA 1607
Query 569 KVGILCIMSDRDL 581
+ +L I + L
Sbjct 1608 RSSLLIIGNMETL 1620
Score = 49.7 bits (117), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 20/84 (24%)
Query 277 YSTLQGPPGTGKSHFAIGLA-----------LYYPS---------ARIVYTACSHAAVDA 316
++ +QGPPGTGK+ IG+ + P+ +I+ A S+AAVD
Sbjct 1147 FTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTESKQQILLCAPSNAAVDE 1206
Query 317 LCEKALKYLPIDKCSRIIPARARV 340
+ + + ++ + IP R+
Sbjct 1207 VLLRLKRGFLLENGEKYIPRVVRI 1230
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens
OX=9606 GN=IGHMBP2 PE=1 SV=3
Length=993
Score = 176 bits (447), Expect = 2e-45, Method: Composition-based stats.
Identities = 61/257 (24%), Positives = 94/257 (37%), Gaps = 41/257 (16%)
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
LPE+ D+VV DE + A + S L+A+ + GD QLP P T+ K L
Sbjct 364 LPESYFDVVVIDECAQA--LEASCWIPLLKARKCILAGDHKQLP-PTTVSHKAALAGLSL 420
Query 423 NSVCRLMKTIGPD--MFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYK--- 477
+ + RL + G L R I+ S +Y +L AH + +
Sbjct 421 SLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAA 480
Query 478 ----------------GVITHDVSSAINRPQIGVVREFLTRNPAW-------RKAVFISP 514
G+ + ++ G VR A R +SP
Sbjct 481 TEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSP 540
Query 515 YNSQ-----NAVASKILGLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNVA 564
YN Q ++ + L ++VD QG E + VI + + E R NVA
Sbjct 541 YNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVA 600
Query 565 ITRAKVGILCIMSDRDL 581
+TRA+ + I R +
Sbjct 601 VTRARRHVAVICDSRTV 617
Score = 50.5 bits (119), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/52 (29%), Positives = 28/52 (54%), Gaps = 2/52 (4%)
Query 272 VGMQKYSTLQGPPGTGKSHFAIGLAL--YYPSARIVYTACSHAAVDALCEKA 321
+ ++ + + GPPGTGK+ + + L +++ A S+ AVD L E+
Sbjct 204 LSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERL 255
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=2E4.130 PE=3
SV=1
Length=1093
Score = 158 bits (399), Expect = 3e-39, Method: Composition-based stats.
Identities = 89/446 (20%), Positives = 150/446 (34%), Gaps = 102/446 (23%)
Query 227 LTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGT 286
L H V APT + + GL + +S +A ++V S +QGPPGT
Sbjct 430 LLGHEVQ--VAPTKITMPKKFHVPGL------PELNASQIAAIKQVLSNPLSLIQGPPGT 481
Query 287 GKS----HFAIGLALYYPSARIVYTACSHAAVDALCEKAL-------------------- 322
GK+ LA +++++ A S+ AVD LCE+
Sbjct 482 GKTVTSATIIYHLAKMS-NSQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESS 540
Query 323 --------------KYLPIDKCSRIIPARARVECFDKFKVNSTLEQY----------VFC 358
+D ++ + D+ + Q V C
Sbjct 541 VSFLALHEQVRMNTTNKELDGLVKLKTETGELSSQDEKRFKQLTRQAEREILQNADVVCC 600
Query 359 T-VNA----LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLT 413
T V A L + V+ DE + + + ++ L K V +GD QL P +
Sbjct 601 TCVGAGDPRLSKMKFRNVLIDESTQSAEPEC-MIPLVLGCKQVVLVGDHKQL-GPVIMNK 658
Query 414 KGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFK 473
K + RL+K + L R + + S + Y+ L+ + + K
Sbjct 659 KAAKAGLNQSLFERLVKLQFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRK 718
Query 474 MFYK---------------GVITHDVS--SAINRPQIGVVREFLTRN----PAWRKAVFI 512
G S S +NR + V + +TR I
Sbjct 719 DVDFPWPVPETPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPADIGVI 778
Query 513 SPYNSQNA------------VASKILGLPTQTVDSSQGSEYDYVIFT-----QTTETAHS 555
+PY Q + + +VD+ QG E D+++ + +
Sbjct 779 TPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFL 838
Query 556 CNVNRFNVAITRAKVGILCIMSDRDL 581
+ R NVA+TRAK G++ I + + L
Sbjct 839 SDPRRLNVALTRAKYGLVIIGNPKVL 864
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease
DNA2 OS=Gallus gallus OX=9031 GN=DNA2 PE=2 SV=2
Length=992
Score = 153 bits (387), Expect = 7e-38, Method: Composition-based stats.
Identities = 75/384 (20%), Positives = 141/384 (37%), Gaps = 54/384 (14%)
Query 239 TLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSH--FAIGLA 296
+++P E + + LN + + Q + + Y+ + G PGTGK+ A+
Sbjct 578 SVLPPEAKEAVASILKGLNKPQKQAMK----QVLLSRDYTLIVGMPGTGKTTTICALVRI 633
Query 297 LYYPSARIVYTACSHAAVDALCEKALKY----LPIDKCSRIIPARARV------------ 340
L ++ T+ +H AVD + K K+ L + + ++ P +
Sbjct 634 LSACGFSVLLTSFTHTAVDNILLKLAKFKVGFLRLGRAQKVHPDIRKFTEEEICRSKSIK 693
Query 341 ------ECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK 394
E ++ V +T + + D + DE S + + +K
Sbjct 694 SVTDLEELYNSQPVVATACMGI--NHPIFVQKQFDFCIVDEASQISQP--ICLGPLFCSK 749
Query 395 HYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSA 454
+V +GD QLP P ++ + RL + + L R ++I+ +
Sbjct 750 RFVLVGDHQQLP-PLVQNSEARDLGMSESLFKRLEQNQNAVVQLTVQYRMNSKIMSLSNK 808
Query 455 LVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVRE------FLTRNPAW-- 506
LVY+ KL+ +K + + + ++ + V E FL A
Sbjct 809 LVYEGKLECGSEKVSNATANLPNLKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKAGCR 868
Query 507 -RKAVFISPYNSQNAVASKILG------LPTQTVDSSQGSEYDYVIFTQTTET------A 553
ISPY Q V + ++ + T+D QG + +I + + A
Sbjct 869 PSDIGIISPYRHQLKVITDLMARLKENRVEVNTIDKYQGRDKSIIIVSFVRNSNDENLGA 928
Query 554 HSCNVNRFNVAITRAKVGILCIMS 577
+ R NVAITRAK ++ +
Sbjct 929 LLKDWRRLNVAITRAKHKLIMVGC 952
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=upf1
PE=3 SV=2
Length=925
Score = 150 bits (378), Expect = 9e-37, Method: Composition-based stats.
Identities = 86/421 (20%), Positives = 145/421 (34%), Gaps = 98/421 (23%)
Query 257 NISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS----HFAIGLALYYPSAR-----IVYT 307
N+ +S + V + S +QGPPGTGK+ LA R ++
Sbjct 389 NLPKLNASQSEAVRAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVC 448
Query 308 ACSHAAVDALCEK----ALKYLPIDKCSR---------------IIPARARVECFDKFKV 348
A S+ AVD L EK L+ + + SR I + E K+
Sbjct 449 APSNVAVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPELQRLLKL 508
Query 349 NSTL-------------------------EQYVFCT-VNA----LPETTADIVVFDEISM 378
S + CT V A + + V+ DE +
Sbjct 509 RSENNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVGAGDRRISKYKFRSVLIDEATQ 568
Query 379 ATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFL 438
A+ + ++ L AK V +GD QL P + K L + RL+ L
Sbjct 569 ASEPEC-MIPLVLGAKQVVLVGDHQQL-GPVVMNKKVALASLSQSLFERLIILGNSPFRL 626
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMF------------YKGVITHDVSS 486
R + + S Y+ L+ S + + + + S
Sbjct 627 VVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFPWIQPDSPLMFYANFGQEELS 686
Query 487 A-----INRPQIG----VVREFLTRNPAWRKAVFISPYNSQNAVASKIL----------- 526
A +NR + +V FL N + ++PY+ Q + + +
Sbjct 687 ASGTSFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQNNGSMQKDLY 746
Query 527 -GLPTQTVDSSQGSEYDYVIFTQTTETAH-----SCNVNRFNVAITRAKVGILCIMSDRD 580
+ +VD+ QG E D++I + + H + R NVA+TRAK G++ + + +
Sbjct 747 KAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGVIVLGNPKV 806
Query 581 L 581
L
Sbjct 807 L 807
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
OX=284812 GN=SPBC29A10.10c PE=3 SV=1
Length=1944
Score = 150 bits (379), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/262 (23%), Positives = 94/262 (36%), Gaps = 41/262 (16%)
Query 367 TADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSV- 425
T V+ DE + A S++ + + V +GDP QLP T+L+K + + Y S+
Sbjct 1509 TFRTVIIDEAAQAVELS-SIIPLKYGCESCVMVGDPNQLPP--TVLSKTSAKFGYSQSLY 1565
Query 426 CRLMKTIGPDM-FLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQC------------- 471
R+ K L R EI S Y++KL + SA
Sbjct 1566 VRMFKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVTSRPWHEDPQLGIY 1625
Query 472 -FKMFYKGVITHDVSSAINRPQIGVVREFLTRNPA-------WRKAVFISPYNSQNAVAS 523
F + + S N + + R K ++PY SQ
Sbjct 1626 RFFNVHGTEAFSNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLR 1685
Query 524 KILG----------LPTQTVDSSQGSEYDYVIF-----TQTTETAHSCNVNRFNVAITRA 568
L TVD QG E D +IF + + ++ R NVA+TRA
Sbjct 1686 SQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRA 1745
Query 569 KVGILCIMSDRDLYDKLQFTSL 590
K + + + + L + F SL
Sbjct 1746 KSSLYIVGNSKPLMQEDIFYSL 1767
Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 24/132 (18%)
Query 236 SAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGL 295
P+ + +I Y +N ++ Y ++ +QGPPGTGK+ +G+
Sbjct 1252 RLPSNFTDDKKQKIMKSY-GVNEPQAYA----IYASSVNDGFTLIQGPPGTGKTKTILGM 1306
Query 296 A---LYYPS----------------ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
L S +I+ A S+AA+D + + + + + P
Sbjct 1307 IGAVLTSSSQGLQFNVPGQTRKTSKNKILICAPSNAAIDEILLRIKAGVYDHEGIKFFPK 1366
Query 337 RARVECFDKFKV 348
RV D V
Sbjct 1367 VIRVGFGDSISV 1378
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog
OS=Drosophila melanogaster OX=7227 GN=Upf1 PE=1 SV=2
Length=1180
Score = 149 bits (377), Expect = 2e-36, Method: Composition-based stats.
Identities = 80/421 (19%), Positives = 133/421 (32%), Gaps = 93/421 (22%)
Query 251 GLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS----HFAIGLALYYPSARIVY 306
L+ ++ D S V + + S +QGPPGTGK+ L + ++
Sbjct 442 KLFSAPHLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVKLH-GGTVLV 500
Query 307 TACSHAAVDALCEKALK--YLPIDKCSRIIPARA-------------------------- 338
A S+ AVD L EK + + C++ A
Sbjct 501 CAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELKKLQQ 560
Query 339 -----------------RVECFDKFKVNSTLEQYVFCTVNA----LPETTADIVVFDEIS 377
++ + ++ + V A L ++ DE
Sbjct 561 LKDETGELSSADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSILIDESM 620
Query 378 MATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMF 437
+T + +V L AK + +GD QL P + K + RL+
Sbjct 621 QSTEPEC-MVPVVLGAKQLILVGDHCQL-GPVVMCKKAARAGLSQSLFERLVVLGIRPFR 678
Query 438 LGTCRRCPAEIVDTVSALVYDNKLK--------------AHKDKSAQCFKMFYKGVITHD 483
L R E+ S Y+ L+ F + +G
Sbjct 679 LEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQPERPMFFLVTQGQEEIA 738
Query 484 VS--SAINRPQIGVVR----EFLTRNPAWRKAVFISPYNSQNAVASKIL----------- 526
S S +NR + V FL + I+PY Q A + +
Sbjct 739 GSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLY 798
Query 527 -GLPTQTVDSSQGSEYDYVIFTQTTE-----TAHSCNVNRFNVAITRAKVGILCIMSDRD 580
+ +VD+ QG E D +I + + R NVA+TRAK GI+ + + +
Sbjct 799 QEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKV 858
Query 581 L 581
L
Sbjct 859 L 859
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) OX=559292 GN=SEN1 PE=1 SV=2
Length=2231
Score = 149 bits (376), Expect = 3e-36, Method: Composition-based stats.
Identities = 56/259 (22%), Positives = 84/259 (32%), Gaps = 43/259 (17%)
Query 366 TTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSV 425
D V+ DE T S++ R K + +GDP QLP T+L+ +Y S+
Sbjct 1582 IKFDTVIIDEACQCTELS-SIIPLRYGGKRCIMVGDPNQLPP--TVLSGAASNFKYNQSL 1638
Query 426 CRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK--------------DKSAQC 471
M+ L R I S+ Y +LK +
Sbjct 1639 FVRMEKNSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKRPWHQLEPLAPYK 1698
Query 472 FKMFYKGVITHD--VSSAINRPQI--------GVVREFLTRNPAWRKAVFISPYNSQNAV 521
F G + S N +I + R+F + K ISPY Q
Sbjct 1699 FFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQK 1758
Query 522 ASKIL----------GLPTQTVDSSQGSEYDYVIFT------QTTETAHSCNVNRFNVAI 565
K + T+D QG E + ++ + + + R NVA+
Sbjct 1759 MRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVAL 1818
Query 566 TRAKVGILCIMSDRDLYDK 584
TRAK I + R L
Sbjct 1819 TRAKTSIWVLGHQRSLAKS 1837
Score = 47.4 bits (111), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 27/100 (27%)
Query 272 VGMQKYSTLQGPPGTGKSHFAIGLALYYPSA---------------------------RI 304
V + +S +QGPPGTGK+ +G+ Y+ S +I
Sbjct 1347 VSKEGFSLIQGPPGTGKTKTILGIIGYFLSTKNASSSNVIKVPLEKNSSNTEQLLKKQKI 1406
Query 305 VYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFD 344
+ A S+AAVD +C + + + + P RV D
Sbjct 1407 LICAPSNAAVDEICLRLKSGVYDKQGHQFKPQLVRVGRSD 1446
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease
DNA2 OS=Bos taurus OX=9913 GN=DNA2 PE=3 SV=3
Length=1061
Score = 147 bits (372), Expect = 7e-36, Method: Composition-based stats.
Identities = 72/380 (19%), Positives = 121/380 (32%), Gaps = 80/380 (21%)
Query 275 QKYSTLQGPPGTGKSH--FAIGLALYYPSARIVYTACSHAAVDALCEKALKYL------- 325
+ Y+ + G PGTGK+ + LY ++ T+ +H+AVD + K K+
Sbjct 641 KDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLAKFKIGFLRLG 700
Query 326 ----PIDKCSRIIPARA-RVECFDKFKV-----NSTLEQYVFC---TVNALPETTADIVV 372
+ R + + NS L C T D +
Sbjct 701 QIQKVHPDIQKFTEEEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKTFDFCI 760
Query 373 FDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTI 432
DE S + + ++ +V +GD QLP P L + + RL +
Sbjct 761 VDEASQISQPV--CLGPLFFSRRFVLVGDHQQLP-PLVLNREARALGMSESLFKRLEQNK 817
Query 433 GPDMFLGTCRRCPAEIVDTVSALVYDNKLK------------------------------ 462
+ L R ++I+ + L Y+ KL+
Sbjct 818 NAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYADYS 877
Query 463 -------AHKDKSAQCFKMFYK--GVITHDVSSAINRPQIGVVR----EFLTRNPAWRKA 509
A + + CF +K + N + +V F+
Sbjct 878 ENPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPSDI 937
Query 510 VFISPYNSQNAVASKILG------LPTQTVDSSQGSEYDYVIFTQTTETAHSC------N 557
I+PY Q V S +L + TVD QG + V+ + +
Sbjct 938 GIIAPYRQQLKVISDLLAQSSVGMVEVNTVDRYQGRDKSIVVVSFVRSNEDGTLGELLKD 997
Query 558 VNRFNVAITRAKVGILCIMS 577
R NVAITRAK ++ +
Sbjct 998 WRRLNVAITRAKHKLILLGC 1017
>sp|P30771|RENT1_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NAM7
PE=1 SV=1
Length=971
Score = 147 bits (371), Expect = 8e-36, Method: Composition-based stats.
Identities = 94/511 (18%), Positives = 171/511 (33%), Gaps = 119/511 (23%)
Query 165 LSWEVGKPRPPLNRNYVFTGYRVTKNSKV-----QIGEYTFEKGDYGDAVVYRGTTTYKL 219
L + K PP + FT + K + + ++ +K + Y+
Sbjct 330 LELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYK------- 382
Query 220 NVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYST 279
+ H V+ +S +P+E + P + SN V + S
Sbjct 383 -------ILGHQVVDISFDVPLPKEFSI------PNFAQLNSSQSNAV--SHVLQRPLSL 427
Query 280 LQGPPGTGKS----HFAIGLALYYPSARIVYTACSHAAVDALCEK----ALKYLPIDKCS 331
+QGPPGTGK+ L+ + RI+ A S+ AVD L K LK + + S
Sbjct 428 IQGPPGTGKTVTSATIVYHLSKIHKD-RILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKS 486
Query 332 R--------------IIPARARVECFDKFKVNS------------------TLEQYVFCT 359
R ++ A+ E + K+ E +
Sbjct 487 REDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNK 546
Query 360 VNALP-----------ETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAP 408
+ + +T V+ DE + A+ + ++ AK + +GD QL P
Sbjct 547 ADVVCCTCVGAGDKRLDTKFRTVLIDESTQASEPEC-LIPIVKGAKQVILVGDHQQL-GP 604
Query 409 RTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKS 468
L K + RL+ + L R + + S + Y+ L+
Sbjct 605 VILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIE 664
Query 469 AQCFK-----------------MFYKGVITHDVSSAINRPQIGVVREFLTRNPAW----R 507
+ + + I+ + +S +NR + +T+
Sbjct 665 QRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPE 724
Query 508 KAVFISPYNSQNAVASK------------ILGLPTQTVDSSQGSEYDYVIFT-----QTT 550
+ I+PY Q A + + + +VD+ QG E DY+I + +
Sbjct 725 QIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQ 784
Query 551 ETAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
+ R NV +TRAK G++ + + R L
Sbjct 785 AIGFLRDPRRLNVGLTRAKYGLVILGNPRSL 815
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium
discoideum OX=44689 GN=DDB_G0274399 PE=3 SV=1
Length=967
Score = 145 bits (367), Expect = 3e-35, Method: Composition-based stats.
Identities = 59/297 (20%), Positives = 109/297 (37%), Gaps = 35/297 (12%)
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKH 395
+ R D+ + +T + ++ DIV+ DE + A +++ + K
Sbjct 553 SSIRTLVLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETS-TLIPIQHGCKK 611
Query 396 YVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSAL 455
V +GDP QLPA T+++ ++ +Y S+ + ++ L T R + I S
Sbjct 612 VVLVGDPKQLPA--TIISPLAIKYKYDQSLFQRLQEKNSPHMLTTQYRMHSLIRAFPSRH 669
Query 456 VYDNKLKAHKDKSAQ-------------CFKMFYKGVITHDVSSAINRPQ-----IGVVR 497
Y + L + ++ F T ++ + + +
Sbjct 670 FYQDLLLDGPNIPSRATHYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECKMAMYLFQ 729
Query 498 EFLTRNPAW---RKAVFISPYNSQNAVASKI----LGLPTQTVDSSQGSEYDYVIFT--- 547
F P + ISPY Q +I G+ TVD QG E + +IF+
Sbjct 730 LFTKVYPDEDFASRIGIISPYRQQVLALREIFKNYPGISIDTVDGFQGREREIIIFSCVR 789
Query 548 ----QTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATL 600
+ +V R NVA+TR + +L + + + L + L +N L
Sbjct 790 APVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELIQHTQNNQQL 846
Score = 37.7 bits (86), Expect = 0.37, Method: Composition-based stats.
Identities = 13/29 (45%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIV 305
+ +QGPPGTGK+H +GL + IV
Sbjct 352 ITLIQGPPGTGKTHVILGLISVLLHSTIV 380
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease
DNA2 OS=Homo sapiens OX=9606 GN=DNA2 PE=1 SV=3
Length=1060
Score = 145 bits (367), Expect = 3e-35, Method: Composition-based stats.
Identities = 72/379 (19%), Positives = 127/379 (34%), Gaps = 79/379 (21%)
Query 275 QKYSTLQGPPGTGKSH--FAIGLALYYPSARIVYTACSHAAVDALCEKALKY----LPID 328
+ Y+ + G PGTGK+ + LY ++ T+ +H+AVD + K K+ L +
Sbjct 641 KDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLAKFKIGFLRLG 700
Query 329 KCSRIIPA-----RARVECFDKFKV--------NSTLEQYVFC---TVNALPETTADIVV 372
+ ++ PA + K NS L C D +
Sbjct 701 QIQKVHPAIQQFTEQEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKIFDFCI 760
Query 373 FDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTI 432
DE S + + ++ +V +GD QLP P L + + RL +
Sbjct 761 VDEASQISQP--ICLGPLFFSRRFVLVGDHQQLP-PLVLNREARALGMSESLFKRLEQNK 817
Query 433 GPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKD------KSAQCFKM------------ 474
+ L R ++I+ + L Y+ KL+ D + + FK
Sbjct 818 SAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYS 877
Query 475 ---FYKGV------------------ITHDVSSAINRPQIGVVR----EFLTRNPAWRKA 509
+ GV + N + ++ F+ +
Sbjct 878 DNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDI 937
Query 510 VFISPYNSQNAVASKILG-----LPTQTVDSSQGSEYDYVIFTQTTETAHSC------NV 558
I+PY Q + + +L + TVD QG + V+ + +
Sbjct 938 GIIAPYRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDW 997
Query 559 NRFNVAITRAKVGILCIMS 577
R NVAITRAK ++ +
Sbjct 998 RRLNVAITRAKHKLILLGC 1016
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog
OS=Arabidopsis thaliana OX=3702 GN=UPF1 PE=1 SV=2
Length=1254
Score = 143 bits (361), Expect = 2e-34, Method: Composition-based stats.
Identities = 79/416 (19%), Positives = 134/416 (32%), Gaps = 94/416 (23%)
Query 258 ISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS--HFAIGLALYYPSA-RIVYTACSHAAV 314
+ + +S V + V + S +QGPPGTGK+ AI + +++ A S+ AV
Sbjct 486 LPELNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAV 545
Query 315 DAL--------------CEKALKYLPIDK------------------------------- 329
D L C K+ + +
Sbjct 546 DQLAEKISATGLKVVRLCAKSREAVSSPVEYLTLHYQVRHLDTSEKSELHKLQQLKDEQG 605
Query 330 --CSRIIPARARVECFDKFKVNSTLEQYVFCTVNA----LPETTADIVVFDEISMATNYD 383
S ++ + ++ + + V A L V+ DE + AT +
Sbjct 606 ELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQVLIDESTQATEPE 665
Query 384 LSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRR 443
++ L K V +GD QL P + K + RL+ + L R
Sbjct 666 C-LIPLVLGVKQVVLVGDHCQL-GPVIMCKKAARAGLAQSLFERLVTLGIKPIRLQVQYR 723
Query 444 CPAEIVDTVSALVYDNKLK---------------AHKDKSAQCFKMFYKGVITHDVS--S 486
+ + S Y+ L+ + F G S S
Sbjct 724 MHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTS 783
Query 487 AINRPQIGVVREFLTRNPAW----RKAVFISPYNSQNAVASKIL------------GLPT 530
+NR + V + +T + I+PY Q A + +
Sbjct 784 YLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEV 843
Query 531 QTVDSSQGSEYDYVIFTQTTE-----TAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
+VDS QG E DY+I + + R NVA+TRA+ GI+ + + + L
Sbjct 844 ASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVL 899
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease
DNA2 OS=Rattus norvegicus OX=10116 GN=Dna2 PE=3 SV=1
Length=1059
Score = 143 bits (360), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/384 (18%), Positives = 126/384 (33%), Gaps = 82/384 (21%)
Query 275 QKYSTLQGPPGTGKSH--FAIGLALYYPSARIVYTACSHAAVDALCEKALKY----LPID 328
+ Y+ + G PGTGK+ A+ L ++ T+ +H+AVD + K K+ L +
Sbjct 641 KDYTLIVGMPGTGKTTTICALVRILSACGFSVLLTSYTHSAVDNILLKLAKFKIGFLRLG 700
Query 329 KCSRIIPARARV------------------ECFDKFKVNSTLEQYVFCTVNALPETTADI 370
+ ++ P + E ++ V +T + + T D
Sbjct 701 QSHKVHPDIQKFTEEEMCRLRSIASLAHLEELYNSHPVVATTCMGI--SHPMFSRKTFDF 758
Query 371 VVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMK 430
+ DE S + + ++ +V +GD QLP P L + + RL +
Sbjct 759 CIVDEASQISQP--ICLGPLFFSRRFVLVGDHKQLP-PLVLNREARALGMSESLFKRLER 815
Query 431 TIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKD------------------------ 466
+ L R +I+ + L Y+ KL+ D
Sbjct 816 NESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADYS 875
Query 467 -----------KSAQCF--KMFYKGVITHDVSSAINRPQIGVVR----EFLTRNPAWRKA 509
+ CF + N + ++ F+ +
Sbjct 876 DNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCSPSDI 935
Query 510 VFISPYNSQNAVASKILG------LPTQTVDSSQGSEYDYVIFTQTTETAHSC------N 557
I+PY Q + +L + TVD QG + ++ + +
Sbjct 936 GIIAPYRQQLRTITDLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELLKD 995
Query 558 VNRFNVAITRAKVGILCIMSDRDL 581
R NVAITRAK ++ + S L
Sbjct 996 WRRLNVAITRAKHKLILLGSVSSL 1019
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis
elegans OX=6239 GN=smg-2 PE=1 SV=1
Length=1069
Score = 142 bits (359), Expect = 2e-34, Method: Composition-based stats.
Identities = 81/414 (20%), Positives = 140/414 (34%), Gaps = 93/414 (22%)
Query 258 ISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS----HFAIGLALYYPSARIVYTACSHAA 313
+ + SS + ++V + S +QGPPGTGK+ L ++ + S+ A
Sbjct 443 LPELNSSQMQAVKQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQKTEGN-VLVCSPSNIA 501
Query 314 VDALCEKALK--YLPIDKCSRIIPARARVECFD--------------------------- 344
VD L EK K + C+R +
Sbjct 502 VDHLAEKIHKTGLKVVRLCARSREHSETTVPYLTLQHQLKVMGGAELQKLIQLKDEAGEL 561
Query 345 KFKVNSTLEQ--------------YVFCTVNA-----LPETTADIVVFDEISMATNYDLS 385
+FK + Q + CT ++ L + V+ DE + AT ++
Sbjct 562 EFKDDLRYMQLKRVKEHELLAAADVICCTCSSAADARLSKIRTRTVLIDESTQATEPEIL 621
Query 386 VVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCP 445
V R + V +GD QL P + K + + RL+ L R
Sbjct 622 VSIMR-GVRQLVLVGDHCQL-GPVVICKKAAIAGLSQSLFERLVLLGIRPFRLQVQYRMH 679
Query 446 AEIVDTVSALVYDNKLKAHKDKSAQ----CFKMFYK-----------GVITHDVS--SAI 488
+ + S + YD L+ ++ + + K G S S +
Sbjct 680 PVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKPAFFWHCSGSEELSASGTSFL 739
Query 489 NRPQIGVVREFLTRNPAW----RKAVFISPYNSQNAVASKIL------------GLPTQT 532
NR + V + +++ + I+ Y Q + + + +
Sbjct 740 NRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYENVEIAS 799
Query 533 VDSSQGSEYDYVIFTQTTE-----TAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
VD+ QG E DY+I T + R NVAITRAK G++ + + + L
Sbjct 800 VDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVL 853
>sp|F1RCY6|RENT1_DANRE Regulator of nonsense transcripts 1 OS=Danio
rerio OX=7955 GN=upf1 PE=2 SV=1
Length=1100
Score = 142 bits (359), Expect = 3e-34, Method: Composition-based stats.
Identities = 78/425 (18%), Positives = 140/425 (33%), Gaps = 94/425 (22%)
Query 248 RITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS----HFAIGLALYYPSAR 303
++ + + D S V + V + S +QGPPGTGK+ LA +
Sbjct 438 QLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR-QGNGP 496
Query 304 IVYTACSHAAVDALCEKALK------------YLPIDKCSRIIPARARVECFDKFK---- 347
++ A S+ AVD L EK + ID + ++ D
Sbjct 497 VLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQK 556
Query 348 ---------------------VNSTLEQYVFCTVNALP------------ETTADIVVFD 374
+ T E+ + + + + ++ D
Sbjct 557 LQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILID 616
Query 375 EISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGP 434
E + AT + +V L AK + +GD QL P + K + RL+
Sbjct 617 ESTQATEPEC-MVPVVLGAKQLILVGDHCQL-GPVVMCKKAAKAGLSQSLFERLVVLGIR 674
Query 435 DMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQC---------------FKMFYKGV 479
+ L R + S + Y+ L+ + + F +G
Sbjct 675 PIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRLKKGFDFQWPQPDKPMFFYVTQGQ 734
Query 480 ITHDVS--SAINRPQIGVVREFLTRN----PAWRKAVFISPYNSQNAVASKIL------- 526
S S +NR + V + TR + I+PY Q + + +
Sbjct 735 EEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLH 794
Query 527 -----GLPTQTVDSSQGSEYDYVIFTQTTE-----TAHSCNVNRFNVAITRAKVGILCIM 576
+ +VD+ QG E D++I + + R NVA+TRA+ G++ +
Sbjct 795 TKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVG 854
Query 577 SDRDL 581
+ + L
Sbjct 855 NPKAL 859
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus
musculus OX=10090 GN=Upf1 PE=1 SV=2
Length=1124
Score = 142 bits (359), Expect = 3e-34, Method: Composition-based stats.
Identities = 77/425 (18%), Positives = 139/425 (33%), Gaps = 94/425 (22%)
Query 248 RITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS----HFAIGLALYYPSAR 303
++ + + D S V + V + S +QGPPGTGK+ LA +
Sbjct 464 QLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR-QGNGP 522
Query 304 IVYTACSHAAVDALCEKALK------------YLPIDKCSRIIPARARVECFDKFK---- 347
++ A S+ AVD L EK + ID + ++ D
Sbjct 523 VLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQK 582
Query 348 ---------------------VNSTLEQYVFCTVNALP------------ETTADIVVFD 374
+ T E+ + + + + ++ D
Sbjct 583 LQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILID 642
Query 375 EISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGP 434
E + AT + +V L AK + +GD QL P + K + RL+
Sbjct 643 ESTQATEPEC-MVPVVLGAKQLILVGDHCQL-GPVVMCKKAAKAGLSQSLFERLVVLGIR 700
Query 435 DMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQC---------------FKMFYKGV 479
+ L R + S + Y+ L+ + + F +G
Sbjct 701 PIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQ 760
Query 480 ITHDVS--SAINRPQIGVVR----EFLTRNPAWRKAVFISPYNSQNAVASKIL------- 526
S S +NR + V + L + I+PY Q + + +
Sbjct 761 EEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLH 820
Query 527 -----GLPTQTVDSSQGSEYDYVIFTQTTE-----TAHSCNVNRFNVAITRAKVGILCIM 576
+ +VD+ QG E D++I + + R NVA+TRA+ G++ +
Sbjct 821 TKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVG 880
Query 577 SDRDL 581
+ + L
Sbjct 881 NPKAL 885
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo
sapiens OX=9606 GN=UPF1 PE=1 SV=2
Length=1129
Score = 142 bits (359), Expect = 3e-34, Method: Composition-based stats.
Identities = 77/425 (18%), Positives = 139/425 (33%), Gaps = 94/425 (22%)
Query 248 RITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS----HFAIGLALYYPSAR 303
++ + + D S V + V + S +QGPPGTGK+ LA +
Sbjct 469 QLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR-QGNGP 527
Query 304 IVYTACSHAAVDALCEKALK------------YLPIDKCSRIIPARARVECFDKFK---- 347
++ A S+ AVD L EK + ID + ++ D
Sbjct 528 VLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQK 587
Query 348 ---------------------VNSTLEQYVFCTVNALP------------ETTADIVVFD 374
+ T E+ + + + + ++ D
Sbjct 588 LQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILID 647
Query 375 EISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGP 434
E + AT + +V L AK + +GD QL P + K + RL+
Sbjct 648 ESTQATEPEC-MVPVVLGAKQLILVGDHCQL-GPVVMCKKAAKAGLSQSLFERLVVLGIR 705
Query 435 DMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQC---------------FKMFYKGV 479
+ L R + S + Y+ L+ + + F +G
Sbjct 706 PIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQ 765
Query 480 ITHDVS--SAINRPQIGVVR----EFLTRNPAWRKAVFISPYNSQNAVASKIL------- 526
S S +NR + V + L + I+PY Q + + +
Sbjct 766 EEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLH 825
Query 527 -----GLPTQTVDSSQGSEYDYVIFTQTTE-----TAHSCNVNRFNVAITRAKVGILCIM 576
+ +VD+ QG E D++I + + R NVA+TRA+ G++ +
Sbjct 826 TKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVG 885
Query 577 SDRDL 581
+ + L
Sbjct 886 NPKAL 890
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease
DNA2 OS=Mus musculus OX=10090 GN=Dna2 PE=1 SV=2
Length=1062
Score = 141 bits (355), Expect = 1e-33, Method: Composition-based stats.
Identities = 70/407 (17%), Positives = 130/407 (32%), Gaps = 93/407 (23%)
Query 275 QKYSTLQGPPGTGKSH--FAIGLALYYPSARIVYTACSHAAVDALCEKALKY----LPID 328
+ Y+ + G PGTGK+ A+ L ++ T+ +H+AVD + K K+ L +
Sbjct 642 KDYTLIVGMPGTGKTTTICALVRILSACGFSVLLTSYTHSAVDNILLKLAKFKVGFLRLG 701
Query 329 KCSRIIPARARV------------------ECFDKFKVNSTLEQYVFCTVNALPETTADI 370
+ ++ P + E ++ + +T + T D
Sbjct 702 QSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMGI--NHPIFSRKTFDF 759
Query 371 VVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMK 430
+ DE S + + ++ +V +GD QLP P + + + RL +
Sbjct 760 CIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLP-PLVVNREARALGMSESLFKRLER 816
Query 431 TIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKD------------------------ 466
+ L R +I+ + L Y KL+ D
Sbjct 817 NESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYAD 876
Query 467 -------------KSAQCF--KMFYKGVITHDVSSAINRPQIGVVR----EFLTRNPAWR 507
+ CF + N + ++ F+ +
Sbjct 877 YSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSPS 936
Query 508 KAVFISPYNSQNAVASKILG------LPTQTVDSSQGSEYDYVIFTQTTETAHSC----- 556
I+PY Q + S +L + TVD QG + ++ +
Sbjct 937 DIGVIAPYRQQLRIISDLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELL 996
Query 557 -NVNRFNVAITRAKVGILCIMSDR---------DLYDKLQFTSLEIP 593
+ R NVA+TRAK ++ + S L+D L L +
Sbjct 997 KDWRRLNVALTRAKHKLILLGSVSSLKRFPPLGTLFDHLNAEQLILD 1043
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase
A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
OX=284812 GN=hcs1 PE=3 SV=1
Length=660
Score = 139 bits (351), Expect = 1e-33, Method: Composition-based stats.
Identities = 83/425 (20%), Positives = 136/425 (32%), Gaps = 116/425 (27%)
Query 272 VGMQKYSTLQGPPGTGKSH--FAIGLALYYPSARIVYTACSH------------------ 311
+ +++ S + GPPGTGK+H I L + RI+ S+
Sbjct 222 IAVKELSLIHGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMV 281
Query 312 ------AAVDALCEKALKYLP---------------IDKC-SRIIPARARVECFDKFK-- 347
+ ++ + +L L ID C S+I + E + +K
Sbjct 282 RLGHPARLLPSILDHSLDVLSRTGDNGDVIRGISEDIDVCLSKITKTKNGRERREIYKNI 341
Query 348 --VNSTLEQY--------------VFCTVNA-----LPETTADIVVFDEISMATNYDLSV 386
+ +Y VFCT++ L D V+ DE S A
Sbjct 342 RELRKDYRKYEAKTVANIVSASKVVFCTLHGAGSRQLKGQRFDAVIIDEASQALEPQ--C 399
Query 387 VNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGP--DMFLGTCRRC 444
L + GD QL +P + Y + RL+K+ G FL R
Sbjct 400 WIPLLGMNKVILAGDHMQL-SPNVQS-----KRPYISMFERLVKSQGDLVKCFLNIQYRM 453
Query 445 PAEIVDTVSALVYDNKLKAHKDKSAQCF--------------KMFYK---GVITHDVSS- 486
I S YD+KL ++ + +++ G D S
Sbjct 454 HELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDRSE 513
Query 487 -------------AINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKIL-----GL 528
+ + L + ++PYN+Q A+ ++L +
Sbjct 514 DMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKEKGIEV 573
Query 529 PTQTVDSSQGSEYDYVIFTQTT-----ETAHSCNVNRFNVAITRAKVGILCIMSDRDLYD 583
+VD QG E + +IF+ E R NVAITR K + I +
Sbjct 574 EMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTVKW 633
Query 584 KLQFT 588
+F
Sbjct 634 ASEFF 638
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium
discoideum OX=44689 GN=upf1 PE=3 SV=1
Length=1331
Score = 140 bits (354), Expect = 2e-33, Method: Composition-based stats.
Identities = 91/480 (19%), Positives = 160/480 (33%), Gaps = 102/480 (21%)
Query 202 KGDYGDAVVYRGTTTYKLNVGD-YFVLTSHTVMP------LSAPTLVPQEHYVRITGLYP 254
KG Y +V+R T++ ++ F + + L P + P +++ +
Sbjct 471 KGSYRMEMVWRSTSSERILSAMKSFAIKEQALSSYLYHALLGHPDIPPAPLDIQLPTNFH 530
Query 255 TLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS---HFAIG-LALYYPSA-RIVYTAC 309
N+ S ++ KV S +QGPPGTGK+ F I L Y +++
Sbjct 531 LKNLPRLNESQISAVNKVLTAPLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTP 590
Query 310 S--------------------------------------HAAVDALCE------------ 319
S H V L +
Sbjct 591 SNVAIDQLTGKLHEIGLKVVRLSSKLREEVASPVEHLTLHKQVYKLDQMGDGELGKLRKL 650
Query 320 -KALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISM 378
+A L + R I R +E K + V L + ++ DE +
Sbjct 651 KEAFGSLSNEDEKRYIYLRRMMEMAILRKADVICATCVGAGDPRLSQFRFPHILIDESTQ 710
Query 379 ATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFL 438
A+ + ++ + AK + +GD QL P L K + RL+ L
Sbjct 711 ASEPEC-LIPLMMGAKQVILVGDHRQL-GPVLLCKKVVDAGLSQSLFERLISLGHHPERL 768
Query 439 GTCRRCPAEIVDTVSALVYDNKLK---AHKDKSAQC--------FKMFYKGVITHDVSSA 487
R + + S Y+ +L +H D+ +Q MF+ + S+
Sbjct 769 TIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPKDPMFFFNCTGSEEISS 828
Query 488 -----INRPQIGVVREFLTRNPAWRK----AVFISPYNSQNAVASKIL------------ 526
IN + + + +T+ I+PY Q A + +
Sbjct 829 SGTSFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQKSGKLNLELYK 888
Query 527 GLPTQTVDSSQGSEYDYVIFTQTTE-----TAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
+ +VDS QG E DY+I + + R NVA+TRA+ G++ + + + L
Sbjct 889 SIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARFGLIILGNAKVL 948
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus
OX=10090 GN=Mov10 PE=1 SV=2
Length=1004
Score = 140 bits (353), Expect = 2e-33, Method: Composition-based stats.
Identities = 83/399 (21%), Positives = 129/399 (32%), Gaps = 102/399 (26%)
Query 280 LQGPPGTGKS----HFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPID------- 328
+ GPPGTGK+ + + P A I+ A S++ D LC++ +LP
Sbjct 523 IFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAP 582
Query 329 -KCSRIIPARARVEC----------FDKFKVNSTLEQYVFCTVNA-------LPETTADI 370
+ R++P + C + K + + A P
Sbjct 583 SRDIRMVPEDIKTCCNWDAKKGEYVYPAKKHLQQYRVLITTLITASRLVSAQFPIDHFTH 642
Query 371 VVFDEISMATNYDLSVVNARLR--------AKHYVYIGDPAQL-PAPRTLLTKGT----- 416
+ DE + V A L V GDP QL P R+ L
Sbjct 643 IFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYS 702
Query 417 -LEPEY-FNSVCRLMKTIGPDMFLGTC---RRCPAEIVDTVSALVYDNKLKAHKDKSA-- 469
LE +NS+ + F+ R I+D + L YD +L+A D
Sbjct 703 LLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDRE 762
Query 470 ----------QCFKMFYKGVITHDVS-----SAINRPQIGVVREFLTRN--PAWRKA--- 509
Q F + + GV+ D S N + V +L + P+ +K
Sbjct 763 RFCRWEGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKAR 822
Query 510 ------VFISPYNSQNAVAS--------------KILGLPTQTVDSSQGSEYDYVIFTQT 549
ISPY Q I L +V+ QG E ++ +
Sbjct 823 LSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTV 882
Query 550 TET------------AHSCNVNRFNVAITRAKVGILCIM 576
+ N RFNVA+TRAK ++ +
Sbjct 883 RSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVG 921
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio
OX=7955 GN=mov10b.2 PE=3 SV=1
Length=1015
Score = 140 bits (352), Expect = 2e-33, Method: Composition-based stats.
Identities = 96/464 (21%), Positives = 147/464 (32%), Gaps = 123/464 (27%)
Query 224 YFVLTSHTVMPLSAPTL--------VPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQ 275
F + S ++ P+S P L + Y + + + +
Sbjct 505 LFPMASRSLNPVSPPALRLFDRKLEYNFQQYSAVCNIVAGTSKPAPY------------- 551
Query 276 KYSTLQGPPGTGKSHFAI----GLALYYPSARIVYTACSHAAVDALCEK--------ALK 323
+ GPPGTGK+ + + P A I+ A S++A D LCEK A K
Sbjct 552 ---LVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQLCEKLITSEHVDAHK 608
Query 324 YLPIDKCSRI---IPARARVECFDK-----FKVNSTLEQY--VFCTV--------NALPE 365
+ SR IP + C F L Y + CT+ E
Sbjct 609 IYRLYASSRNQKDIPKILKDNCNVDEEMIDFPCKEDLMSYKILICTLVTAGRLVTGGFSE 668
Query 366 TTADIVVFDEISMATNYD--LSVVNARLRAK-HYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
DE A + +SV K V GDP QL P
Sbjct 669 DHFTHNFVDEAGHAVESETIISVAGLLNAEKGQLVLAGDPKQL-GPILRSPLAINHGLDV 727
Query 423 NSVCRLMK-----TIGPDMF-------LGTCRRCPAEIVDTVSALVYDNKLKAHKD---K 467
+ + RLM G F L R I++ + L YD +LKA D
Sbjct 728 SLLERLMTQNDLYKRGDVEFDNRYVSKLIMNYRSHPYILEVPNRLFYDGELKACADEISS 787
Query 468 SAQC---------FKMFYKGVITHDVS-----SAINRPQIGVVREFLTRN----PAW--- 506
+ C F + + GV D S N +I ++ ++L + P
Sbjct 788 NQYCMWEHLPSKGFPVIFHGVPGKDERESNSPSFFNIYEINILVDYLKKLLLTQPKKGIS 847
Query 507 ----RKAVFISPYNSQNAVASKILG-------------LPTQTVDSSQGSEYDYVIFTQT 549
+ I+PY Q + + L +V+ QG E ++ +
Sbjct 848 RIFPKDIGIIAPYRKQVEKIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTV 907
Query 550 T------------ETAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
N RFNVA+TRAK ++ + + L
Sbjct 908 RSSVKYISLDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMIL 951
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio
OX=7955 GN=mov10b.1 PE=2 SV=2
Length=1013
Score = 140 bits (352), Expect = 2e-33, Method: Composition-based stats.
Identities = 82/395 (21%), Positives = 133/395 (34%), Gaps = 97/395 (25%)
Query 279 TLQGPPGTGKSHFAI----GLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCS--R 332
+ GPPGTGK+ + + ARI+ A S++A D L EK + +D + R
Sbjct 547 LVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSAADQLGEKLITSQHVDARNIYR 606
Query 333 IIPARARVECFDKFKVNSTLE----------------QYVFCTV--------NALPETTA 368
I + + K N++ + V CT+ P
Sbjct 607 IYASSRNPKEIPKVLENNSNVEGENIIFPCKEDLMPYKIVVCTLVTAGRLVSGGFPVGHF 666
Query 369 DIVVFDEISMATNYDLSVVNARL---RAKHYVYIGDPAQLP-------APRTLLTKGTLE 418
+ DE A ++ + A L V GDP QL A + L LE
Sbjct 667 SHIFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLE 726
Query 419 PEYF-NSVCRLMKTIGPDMF---LGTCRRCPAEIVDTVSALVYDNKLKAHKDK------- 467
N + + T + + L R I+ + L YDN+LKA D+
Sbjct 727 RLMTQNELYQKGDTGFDNRYVTKLLQNYRSHPSILKVPNELFYDNELKACADEISSRQYC 786
Query 468 -----SAQCFKMFYKGVITHDVS-----SAINRPQIGVVREFLTRN-----------PAW 506
+ F + + GV+ D S N +I + ++L + +
Sbjct 787 TWEHLPKRGFPVIFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKISP 846
Query 507 RKAVFISPYNSQNAVASKIL-------------GLPTQTVDSSQGSEYDYVIFTQTT--- 550
+ I+PY Q + + L +V+ QG E +I +
Sbjct 847 KDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSSK 906
Query 551 ---------ETAHSCNVNRFNVAITRAKVGILCIM 576
N RFNVA+TRAK ++ +
Sbjct 907 EHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVG 941
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease
DNA2 OS=Xenopus laevis OX=8355 GN=dna2 PE=1 SV=1
Length=1053
Score = 139 bits (351), Expect = 3e-33, Method: Composition-based stats.
Identities = 72/392 (18%), Positives = 127/392 (32%), Gaps = 85/392 (22%)
Query 275 QKYSTLQGPPGTGKSH--FAIGLALYYPSARIVYTACSHAAVDALCEKALKY----LPID 328
+ Y+ + G PGTGK+ + LY ++ T+ +H+AVD + K K+ L +
Sbjct 642 KDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLKLKKFQVGFLRLG 701
Query 329 KCSRIIP-----ARARVECFDKFKV--------NSTLEQYVFC---TVNALPETTADIVV 372
+ ++ P + + K NS C D +
Sbjct 702 RTQKLHPDVQEFSEEEICKAKSIKSLSALEELYNSQPVVATTCMGVNHPIFTRRRFDFCI 761
Query 373 FDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPA--PRTLLTKGTLEPEYFNSVCRLMK 430
DE S + + A +V +GD QLP + + F + R +
Sbjct 762 VDEASQISQP--ICLGPLFFADRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQE 819
Query 431 TIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKD------------------------ 466
+ L R ++I+ + LVY+ +L+ D
Sbjct 820 AVVQ---LTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRES 876
Query 467 ------------KSAQCFKMFYK--GVITHDVSSAINRPQIGVV----REFLTRNPAWRK 508
+ CF K + T + N + +V + +L
Sbjct 877 QESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPSD 936
Query 509 AVFISPYNSQNAVAS------KILGLPTQTVDSSQGSEYDYVIFTQTTET------AHSC 556
I+PY Q + S + TVD QG + +I +
Sbjct 937 IGIIAPYRQQLKMISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLK 996
Query 557 NVNRFNVAITRAKVGILCIMSDRDL--YDKLQ 586
+ R NVA+TRAK ++ + L +D L+
Sbjct 997 DWRRLNVALTRAKHKLIMLGCVPTLNRFDCLE 1028
>sp|Q9BXT6|M10L1_HUMAN RNA helicase Mov10l1 OS=Homo sapiens OX=9606
GN=MOV10L1 PE=1 SV=1
Length=1211
Score = 139 bits (350), Expect = 4e-33, Method: Composition-based stats.
Identities = 69/381 (18%), Positives = 120/381 (31%), Gaps = 86/381 (23%)
Query 282 GPPGTGKS----HFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCS------ 331
GPPGTGK+ + + P +RI+ A S++A D +C + + + +
Sbjct 770 GPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNA 829
Query 332 -----RIIPARARVECFDKFKVNSTLE---QYVFCTVNAL------PETTADIVVFDEIS 377
I+ + C D + C+ + L V DE
Sbjct 830 TCRFEEIVIDAVKPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAG 889
Query 378 MATNYDLSVVNARLR--AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMK----- 430
A+ + + + + V GDP QL P + + RLM
Sbjct 890 QASEPECLIPLGLMSDISGQIVLAGDPMQL-GPVIKSRLAMAYGLNVSFLERLMSRPAYQ 948
Query 431 ----------TIGPDMF--LGTCRRCPAEIVDTVSALVYDNKLKAHKDKS---------- 468
P + L R ++ S L Y +L+ D +
Sbjct 949 RDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEK 1008
Query 469 --AQCFKMFYKGVITHDVS-----SAINRPQIGVVREF-------LTRNPAWRKAVFISP 514
+ F + + GV + S N + V + ++ + I+P
Sbjct 1009 LPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITP 1068
Query 515 YNSQNAVAS------KILGLPTQTVDSSQGSEYDYVIFTQTTET-----------AHSCN 557
Y Q ++ + +V+ QG EY +I + N
Sbjct 1069 YRKQVEKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSN 1128
Query 558 VNRFNVAITRAKVGILCIMSD 578
RFNVAITR K +L ++ +
Sbjct 1129 SKRFNVAITRPK-ALLIVLGN 1148
>sp|Q9HCE1|MOV10_HUMAN Helicase MOV-10 OS=Homo sapiens OX=9606
GN=MOV10 PE=1 SV=2
Length=1003
Score = 137 bits (345), Expect = 2e-32, Method: Composition-based stats.
Identities = 87/404 (22%), Positives = 133/404 (33%), Gaps = 103/404 (25%)
Query 280 LQGPPGTGKS----HFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPID------- 328
+ GPPGTGK+ + + P A I+ A S++ D LC++ +LP
Sbjct 522 IFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAP 581
Query 329 -KCSRIIPARARVEC----------FDKFKVNSTLEQYVFCTVNA-------LPETTADI 370
+ R++P + C F K + + A P
Sbjct 582 SRDIRMVPEDIKPCCNWDAKKGEYVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTH 641
Query 371 VVFDEISMATNYDLSVVNARLR--------AKHYVYIGDPAQL-PAPRTLLTKGT----- 416
+ DE + V A L V GDP QL P R+ LT+
Sbjct 642 IFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYS 701
Query 417 -LEPE-YFNSVCRLMKTIGPDMFLGTC---RRCPAEIVDTVSALVYDNKLKAHKDKSA-- 469
LE +NS+ + F+ R I+D + L Y+ +L+A D
Sbjct 702 LLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRE 761
Query 470 ----------QCFKMFYKGVITHDVS-----SAINRPQIGVVREFLTRN--PAWRKA--- 509
Q F + + GV+ D S N + V +L P+ +K
Sbjct 762 RFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKAR 821
Query 510 ------VFISPYNSQNAVAS--------------KILGLPTQTVDSSQGSEYDYVIFTQT 549
ISPY Q I L +V+ QG E ++ +
Sbjct 822 LSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTV 881
Query 550 TET------------AHSCNVNRFNVAITRAKVGILCIMSDRDL 581
+ N RFNVA+TRAK +L I+ + L
Sbjct 882 RSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAK-ALLIIVGNPLL 924
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0104
PE=3 SV=1
Length=663
Score = 134 bits (336), Expect = 1e-31, Method: Composition-based stats.
Identities = 54/247 (22%), Positives = 99/247 (40%), Gaps = 38/247 (15%)
Query 368 ADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCR 427
D++V DE S A S + ++ + + GD QLP P L L+ F + +
Sbjct 395 FDVIVIDEGSQAMEP--SCLIPIVKGRKLIMAGDHKQLP-PTVLSENEELKKTLFERLIK 451
Query 428 LMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKA-------------HKDKSAQCFKM 474
L R +I++ + + Y+NKLKA +++ + +
Sbjct 452 KYPEFSS--ILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDRD 509
Query 475 F----------YKGVITHDVSS--AINRPQIGVVREFLTRNPAWRKAV-FISPYNSQNAV 521
+G+ D S N + V E + + ++ I+PY++Q
Sbjct 510 IINEIPVQFINVEGIERKDKESPSYYNIEEAEKVLEIVKKLVKYKIPTNVITPYDAQVRY 569
Query 522 ASKI-----LGLPTQTVDSSQGSEYDYVI--FTQTTETAHSCNVNRFNVAITRAKVGILC 574
++ + + TVD QG E + ++ F +T ++ R NVAITRAK ++
Sbjct 570 LRRLFEEHNIDIEVNTVDGFQGRENEAIVISFVRTKNFGFLKDLRRLNVAITRAKRKLIL 629
Query 575 IMSDRDL 581
I ++ L
Sbjct 630 IGNENLL 636
Score = 46.2 bits (108), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/83 (27%), Positives = 39/83 (47%), Gaps = 9/83 (11%)
Query 260 DEFSSNVANYQKVGMQKYST------LQGPPGTGKS---HFAIGLALYYPSARIVYTACS 310
+ + N+ QK+ ++K + GPPGTGK+ I + + +++ TA S
Sbjct 179 EFYDKNLNESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADS 238
Query 311 HAAVDALCEKALKYLPIDKCSRI 333
+ A D + E +K P K R+
Sbjct 239 NIAADNILEYLIKKYPDLKVVRV 261
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus
OX=9031 GN=MOV10 PE=2 SV=1
Length=967
Score = 134 bits (337), Expect = 1e-31, Method: Composition-based stats.
Identities = 90/418 (22%), Positives = 136/418 (33%), Gaps = 109/418 (26%)
Query 273 GMQKYS--TLQGPPGTGKS----HFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLP 326
GM + + + GPPGTGK+ + + ARI+ A S++A D LC++ L +
Sbjct 505 GMSRPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPSNSAADLLCQRLLTNIA 564
Query 327 IDKCSRI---------IPARARVEC----------FDKFKVNSTLEQYVFCTVNA----- 362
RI +PA R C + K+ + V A
Sbjct 565 PRYIYRIMASSANYKDVPADVRPCCNWDDSEKCYVYPSKKLLKPYRILITTLVTAGRLVS 624
Query 363 --LPETTADIVVFDEISMATNYDLSVVNARL----------RAKHYVYIGDPAQL-PAPR 409
P V DE A + V A L V GDP QL P PR
Sbjct 625 ANFPPGYFSHVFIDECGHAVEPESVVAIAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPR 684
Query 410 T------LLTKGTLEPE-YFNSVCRLMKTIGPDMFLGTC---RRCPAEIVDTVSALVYDN 459
+ L LE N++ F+ R I+ + L YD+
Sbjct 685 SPLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVTKLLWNYRSHKAILKVPNELFYDS 744
Query 460 KLKAHKDKSAQC--------------FKMFYKGVITHDVS-----SAINRPQIGVVREFL 500
+LKA++ + + GV D S N +I VV ++L
Sbjct 745 ELKAYEGSEPDVRNFYCTWEELPNRGVPIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYL 804
Query 501 TRN---------PAW--RKAVFISPYNSQNAVASKILG--------------LPTQTVDS 535
+ P ++ ISPY Q + L +V+
Sbjct 805 QKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEE 864
Query 536 SQGSEYDYVIFT------------QTTETAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
QG E ++ + QT N R NVA+TRAK ++ + + L
Sbjct 865 FQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVL 922
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus
OX=9913 GN=MOV10 PE=2 SV=1
Length=1003
Score = 134 bits (337), Expect = 2e-31, Method: Composition-based stats.
Identities = 85/399 (21%), Positives = 130/399 (33%), Gaps = 102/399 (26%)
Query 280 LQGPPGTGKS----HFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPID------- 328
+ GPPGTGK+ + + P A I+ A S++ D LC++ +LP
Sbjct 522 IFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAP 581
Query 329 -KCSRIIPARARVEC----------FDKFKVNSTLEQYVFCTVNA-------LPETTADI 370
+ ++P + C F K + + A P
Sbjct 582 SRDIHLVPEDIKPCCNWDAKKGDFVFPSKKKLQEYRVLITTLITASRLVSAQFPIDHFTH 641
Query 371 VVFDEISMATNYDLSVVNARLR--------AKHYVYIGDPAQL-PAPRTLLTKGT----- 416
+ DE A + V A L V GDP QL P R LT+
Sbjct 642 IFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYS 701
Query 417 -LEPE-YFNSVCRLMKTIGPDMFLGTC---RRCPAEIVDTVSALVYDNKLKAHKDKSA-- 469
LE FN++ + F+ R I+D + L YD +L+A D
Sbjct 702 LLERLLTFNALYKKGPDGYNPQFITKLLRNYRSHPTILDVPNRLYYDGELQACADVVDRE 761
Query 470 ----------QCFKMFYKGVITHDVS-----SAINRPQIGVVREFLTRN--PAWRKA--- 509
Q F + + GV+ D S N + V +L + P+ +K
Sbjct 762 RFCRWEGLPRQDFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKAR 821
Query 510 ------VFISPYNSQNAVAS--------------KILGLPTQTVDSSQGSEYDYVIFTQT 549
ISPY Q I L +V+ QG E ++ +
Sbjct 822 LSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTV 881
Query 550 TET------------AHSCNVNRFNVAITRAKVGILCIM 576
+ N RFNVA+TRAK ++ +
Sbjct 882 RSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVG 920
>sp|A0A1P8ASY1|JHS1_ARATH DNA replication ATP-dependent helicase/nuclease
JHS1 OS=Arabidopsis thaliana OX=3702 GN=JHS1 PE=2
SV=1
Length=1331
Score = 134 bits (337), Expect = 2e-31, Method: Composition-based stats.
Identities = 87/437 (20%), Positives = 162/437 (37%), Gaps = 73/437 (17%)
Query 213 GTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNI--SDEFSSN---VA 267
+ + N+ FV H + + P+ I P ++ S++ +N A
Sbjct 871 SFSVMRFNLMQLFVQNGHNIRKMIVDLEPPRFDNGSILSQDPAISYIWSEKSLNNDQRQA 930
Query 268 NYQKVGMQKYSTLQGPPGTGKSHFAIG--LALYYPSARIVYTACSHAAVDALCEK----A 321
+ + + Y+ + G PGTGK+ + AL + I+ + +++AVD L K
Sbjct 931 ILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGSSILLASYTNSAVDNLLIKLKAQG 990
Query 322 LKYLPIDKCSRIIPARARVECFD----------KFKVNSTLEQYVFCT-VNA--LPETTA 368
+++L I + + R CF K K++ C +N+ L
Sbjct 991 IEFLRIGR-DEAVHEEVRESCFSAMNMCSVEDIKKKLDQVKVVASTCLGINSPLLVNRRF 1049
Query 369 DIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRL 428
D+ + DE + L A +V +GD QLP + + E S+ R
Sbjct 1050 DVCIIDEAGQIALPVS--IGPLLFASTFVLVGDHYQLPP--LVQSTEARENGMGISLFRR 1105
Query 429 MKTIGPDM--FLGTCRRCPAEIVDTVSALVYDN------------------------KLK 462
+ P L R I++ +AL+Y + LK
Sbjct 1106 LSEAHPQAISVLQNQYRMCRGIMELSNALIYGDRLCCGSAEVADATLVLSTSSSTSPWLK 1165
Query 463 AHKDKSAQCFKMFYKGVITHDVSS--AINRPQ-----IGVVREFLTRNPAWRKAVFISPY 515
+ + + + + AIN P +V E + + I+PY
Sbjct 1166 KVLEPTRTVVFVNTDMLRAFEARDQNAINNPVEASIIAEIVEELVNNGVDSKDIGIITPY 1225
Query 516 NSQNAV---ASKILGLPTQTVDSSQGSEYDYVIFT--------QTTETAHSCNVNRFNVA 564
NSQ ++ A + T+D QG + D ++ + +++ ++ + +R NVA
Sbjct 1226 NSQASLIQHAIPTTPVEIHTIDKYQGRDKDCILVSFVRSREKPRSSASSLLGDWHRINVA 1285
Query 565 ITRAKVGILCIMSDRDL 581
+TRAK ++ + S R L
Sbjct 1286 LTRAKKKLIMVGSQRTL 1302
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus
OX=10090 GN=Setx PE=1 SV=1
Length=2646
Score = 132 bits (333), Expect = 8e-31, Method: Composition-based stats.
Identities = 59/266 (22%), Positives = 94/266 (35%), Gaps = 46/266 (17%)
Query 368 ADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCR 427
V+ DE + + ++ R + +GDP QLP T+++ E Y S+
Sbjct 2151 FSCVIVDEAGQSCEVE-TLSPLIHRCNKLILVGDPKQLPP--TVISMKAQEYGYDQSMMA 2207
Query 428 LMKTIG------------PDMFLGTCRRCPAEIVDTVSALVYDNKLKAHK-DKSAQCFKM 474
+ P + L R +I S VY+ LK ++ +S +C
Sbjct 2208 RFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTESIRCSSE 2267
Query 475 FY----------KGVITHDVSSAINRPQIGVVREFLTRNPAWRK------AVFISPYNSQ 518
+ G D S IN +I +V E + RK I+ Y +Q
Sbjct 2268 WPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEIIKLIKEKRKDISFRNIGIITHYKAQ 2327
Query 519 NAVASKILG--------LPTQTVDSSQGSEYDYVIFT------QTTETAHSCNVNRFNVA 564
+ K L TVD+ QG + D +I T ++ R NV
Sbjct 2328 KTMIQKDLEKEFDKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVT 2387
Query 565 ITRAKVGILCIMSDRDLYDKLQFTSL 590
ITRAK + + R L + + L
Sbjct 2388 ITRAKYSLFILGHLRTLMENQHWYEL 2413
Score = 46.6 bits (109), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/69 (29%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
Query 276 KYSTLQGPPGTGKSHFAIGL------------------ALYYPSARIVYTACSHAAVDAL 317
K + GPPGTGKS +GL R++ A S+AAVD L
Sbjct 1933 KICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDEL 1992
Query 318 CEKALKYLP 326
+K +
Sbjct 1993 MKKIILEFK 2001
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens
OX=9606 GN=SETX PE=1 SV=4
Length=2677
Score = 130 bits (327), Expect = 4e-30, Method: Composition-based stats.
Identities = 58/266 (22%), Positives = 96/266 (36%), Gaps = 46/266 (17%)
Query 368 ADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCR 427
V+ DE + + ++ R + +GDP QLP T+++ E Y S+
Sbjct 2175 FSCVIVDEAGQSCEIE-TLTPLIHRCNKLILVGDPKQLPP--TVISMKAQEYGYDQSMMA 2231
Query 428 LMKTIG------------PDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSA-QCFKM 474
+ P + L R +I S VY+ LK ++ A +C
Sbjct 2232 RFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSD 2291
Query 475 FY----------KGVITHDVSSAINRPQIGVVREFLT------RNPAWRKAVFISPYNSQ 518
+ G D S IN +I +V E + ++ ++R I+ Y +Q
Sbjct 2292 WPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQ 2351
Query 519 NAVASKILG--------LPTQTVDSSQGSEYDYVIF------TQTTETAHSCNVNRFNVA 564
+ K L TVD+ QG + D VI + ++ R NV
Sbjct 2352 KTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVT 2411
Query 565 ITRAKVGILCIMSDRDLYDKLQFTSL 590
ITRAK + + R L + + L
Sbjct 2412 ITRAKYSLFILGHLRTLMENQHWNQL 2437
Score = 46.6 bits (109), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/69 (29%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
Query 276 KYSTLQGPPGTGKSHFAIGL------------------ALYYPSARIVYTACSHAAVDAL 317
K + GPPGTGKS +GL R++ A S+AAVD L
Sbjct 1957 KICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDEL 2016
Query 318 CEKALKYLP 326
+K +
Sbjct 2017 MKKIILEFK 2025
>sp|Q99MV5|M10L1_MOUSE RNA helicase Mov10l1 OS=Mus musculus OX=10090
GN=Mov10l1 PE=1 SV=1
Length=1187
Score = 129 bits (325), Expect = 6e-30, Method: Composition-based stats.
Identities = 70/381 (18%), Positives = 120/381 (31%), Gaps = 86/381 (23%)
Query 282 GPPGTGKS----HFAIGLALYYPSARIVYTACSHAAVDALCEKALKYL--------PIDK 329
GPPGTGK+ + + P +RI+ A S++A D +C + + ++
Sbjct 772 GPPGTGKTVTIIEAVLQVHYALPDSRILVCAPSNSAADLVCLRLHESKVPKPAAMVRVNA 831
Query 330 CSRI---IPARARVECFDKFKVNSTLE---QYVFCTVNAL------PETTADIVVFDEIS 377
R I + C D + C+ L V DE
Sbjct 832 TCRFEETIIDAIKPYCRDGEDIWRASRFRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAG 891
Query 378 MATNYDLSVVNARLRA--KHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMK----- 430
A+ + + + V GDP QL P + + RLM
Sbjct 892 QASEPECLIPLGLISDINGQIVLAGDPMQL-GPVIKSRLAMAYGLNVSMLERLMSRPAYL 950
Query 431 ----------TIGPDMF--LGTCRRCPAEIVDTVSALVYDNKLKAHKD------------ 466
P + L R + ++ S L Y +L+ D
Sbjct 951 RDENAFGACGAYNPLLVTKLVKNYRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEK 1010
Query 467 KSAQCFKMFYKGVITHDVS-----SAINRPQIGVVREF-------LTRNPAWRKAVFISP 514
+ F + + GV ++ S + + V + ++ + + I+P
Sbjct 1011 LPRKGFPLIFHGVRGNEAREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSSKDIGVITP 1070
Query 515 YNSQNAVASKIL------GLPTQTVDSSQGSEYDYVIFTQTTET-----------AHSCN 557
Y Q +L + +V+ QG EY ++ + N
Sbjct 1071 YRKQVEKIKILLRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSN 1130
Query 558 VNRFNVAITRAKVGILCIMSD 578
RFNVAITR K +L I+ +
Sbjct 1131 SKRFNVAITRPK-ALLIILGN 1150
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase
A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
OX=559292 GN=HCS1 PE=1 SV=1
Length=683
Score = 128 bits (321), Expect = 8e-30, Method: Composition-based stats.
Identities = 53/269 (20%), Positives = 91/269 (34%), Gaps = 51/269 (19%)
Query 364 PETTADIVVFDEISMATNYD--LSVVNARLRAKHYVYIGDPAQLPA----PRTLLTKGTL 417
D ++ DE+S A + ++ + + V GD QLP L
Sbjct 385 NFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNL 444
Query 418 EPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFY- 476
E F+ + ++ FL R +I++ S +Y+ KL A + +
Sbjct 445 ETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPT 504
Query 477 ---------------------KGVITHDV-------SSAINRPQIGVVREFLTR----NP 504
+G + S N +I +V+E + N
Sbjct 505 VDATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLRSFNV 564
Query 505 AWRKAVFISPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFTQTT-----ET 552
ISPYN+Q + K++ + TVD QG E D +I + E
Sbjct 565 PENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEV 624
Query 553 AHSCNVNRFNVAITRAKVGILCIMSDRDL 581
R NVA+TR + ++ + + L
Sbjct 625 GFLKEERRLNVAMTRPRRQLVVVGNIEVL 653
Score = 50.5 bits (119), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/101 (27%), Positives = 42/101 (42%), Gaps = 10/101 (10%)
Query 238 PTLVPQEHYVRITG-LYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS----HFA 292
P + + I L P LN S + + N A + + GPPGTGK+
Sbjct 189 PFIPNTNSFQNIKSFLNPNLNDSQKTAINFAI-----NNDLTIIHGPPGTGKTFTLIELI 243
Query 293 IGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRI 333
L + P RI+ S+ +VD + E+ +P + RI
Sbjct 244 QQLLIKNPEERILICGPSNISVDTILERLTPLVPNNLLLRI 284
>sp|Q0VGT4|ZGRF1_MOUSE 5'-3' DNA helicase ZGRF1 OS=Mus musculus
OX=10090 GN=Zgrf1 PE=1 SV=2
Length=1863
Score = 128 bits (321), Expect = 2e-29, Method: Composition-based stats.
Identities = 52/248 (21%), Positives = 89/248 (36%), Gaps = 29/248 (12%)
Query 358 CTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTL 417
C L + +VV DE S T + AR + + + +GDP QLP P +
Sbjct 1554 CAFPCLNDLKFPVVVLDECSQMTEPASLLPIARFQCEKLILVGDPKQLP-PTIQGSDAAH 1612
Query 418 EPEYFNSVCRLMKTIGPD-MFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQ------ 470
E ++ + +G + L T RC I + L Y+ L + +
Sbjct 1613 ENGLEQTLFDRLCLMGHKPVLLRTQYRCHPAISAIANDLFYEGSLVNGISERERSPVLEW 1672
Query 471 ----CFKMFYKGVITHDVSSAINRPQIGV----VREFLTRNPAWRKAVFISPYNSQNAVA 522
CF +S +N + ++ + I+ Y SQ
Sbjct 1673 LPTLCFYNVTGAEQVERENSFVNVAEATFTLKLIQSLMASGVESCMIGVITLYKSQMYKI 1732
Query 523 SKILG-----------LPTQTVDSSQGSEYDYVIFT--QTTETAHSCNVNRFNVAITRAK 569
+L + TVD+ QG+E + I + +T + + R NVA+TR +
Sbjct 1733 CNLLSAVDVGHPDVKAVQVSTVDAFQGAEKEITILSCVRTRQVGFIDSEKRMNVALTRGR 1792
Query 570 VGILCIMS 577
+L + S
Sbjct 1793 RHLLIVGS 1800
>sp|Q86YA3|ZGRF1_HUMAN 5'-3' DNA helicase ZGRF1 OS=Homo sapiens
OX=9606 GN=ZGRF1 PE=1 SV=3
Length=2104
Score = 122 bits (307), Expect = 1e-27, Method: Composition-based stats.
Identities = 51/243 (21%), Positives = 91/243 (37%), Gaps = 31/243 (13%)
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
+ + +VV DE S T + AR + + +GDP QLP P + E
Sbjct 1798 MNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLP-PTIQGSDAAHENGLE 1856
Query 423 NSVCRLMKTIGPD-MFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQ----------C 471
++ + +G + L T RC I + L Y L + + C
Sbjct 1857 QTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPTLC 1916
Query 472 FKMFYKGVITHDVSSAINRP-----QIGVVREFLTRNPAWRKAVFISPYNSQNAVASKIL 526
F KG+ + ++ + + +++ + A I+ Y SQ +L
Sbjct 1917 FYNV-KGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLL 1975
Query 527 -----------GLPTQTVDSSQGSEYDYVIFT--QTTETAHSCNVNRFNVAITRAKVGIL 573
+ TVD+ QG+E + +I + +T + + R NVA+TR K +L
Sbjct 1976 SAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGKRHLL 2035
Query 574 CIM 576
+
Sbjct 2036 IVG 2038
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease
dna2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) OX=284812 GN=dna2 PE=1 SV=2
Length=1397
Score = 118 bits (295), Expect = 3e-26, Method: Composition-based stats.
Identities = 106/513 (21%), Positives = 169/513 (33%), Gaps = 105/513 (20%)
Query 156 EVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQ-IGE----YTFEKGDYGDAV- 209
EV + LH+ W + P +N VF G ++SK+ IG Y +K ++ +
Sbjct 832 EVRTRHRLHIPW-LKMPNFDFKKNQVFFGNY--EDSKLSFIGSNHTRYRIDKDEFSSGIA 888
Query 210 VYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANY 269
RGT + D ++ ++ L P + I EF +
Sbjct 889 SIRGTLMSSVLP-DAPLIIRDMIIRLKPPKFCN------------SALIDPEFLKCLNED 935
Query 270 QKVGMQK------YSTLQGPPGTGKSHFAIGL--ALYYPSARIVYTACSHAAVDALCEKA 321
Q ++K YS + G PGTGK+ L +L +I+ T+ +H AVD + K
Sbjct 936 QITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKKKKILLTSFTHLAVDNILIKL 995
Query 322 ----LKYLPIDKCSRIIPARARVECFDKFKVNS--------TLEQYVFCT-----VNALP 364
+ + +I P + + Q V C+ +
Sbjct 996 KGCDSTIVRLGSPHKIHPLVKEFCLTEGTTFDDLASLKHFYEDPQIVACSSLGVYHSIFN 1055
Query 365 ETTADIVVFDEISMATNYDLSVVNARLR-AKHYVYIGDPAQLPA--PRTLLTKGTLEPEY 421
+ D + DE S L + L+ A+ +V +GD QLP + +K L
Sbjct 1056 KRKFDYCIIDEASQIP---LPICLGPLQLAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSL 1112
Query 422 FNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQ---CFKMFYKG 478
F + L R +I S L+Y L +Q +
Sbjct 1113 FKLLSEKHPE--AVTTLRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLS 1170
Query 479 VITHDVSSA----------------INRPQI---------------------GVVREFLT 501
D SS+ N I V FL
Sbjct 1171 DGLPDSSSSLHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLE 1230
Query 502 RNPAWRKAVFISPYNSQNAVASKIL----GLPTQTVDSSQGSEYDYVIFTQTTETAHSC- 556
R IS Y SQ + SK L + TVD QG + D ++ + + +
Sbjct 1231 RGVKQSSIGIISIYKSQVELLSKNLKSFTEIEINTVDRYQGRDKDIILISFVRSNSKNLV 1290
Query 557 -----NVNRFNVAITRAKVGILCIMSDRDLYDK 584
+ +R NVA++RAKV + S L
Sbjct 1291 GELLRDWHRLNVALSRAKVKCIMFGSLSTLSSS 1323
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts
1 OS=Takifugu rubripes OX=31033 GN=rent1 PE=3 SV=1
Length=1097
Score = 114 bits (285), Expect = 4e-25, Method: Composition-based stats.
Identities = 72/416 (17%), Positives = 131/416 (31%), Gaps = 98/416 (24%)
Query 258 ISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS----HFAIGLALYYPSARIVYTACSHAA 313
+ D S V + V + S +QGPPGTGK+ L+ + ++ A S+ A
Sbjct 450 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLSR-QGNGPVLVCAPSNIA 508
Query 314 VDAL--------------CEKALKYLPIDKCSRIIPARARV------------------- 340
VD L C K+ + + + +
Sbjct 509 VDQLTEKIDKTGLKVVRLCAKSREAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGE 568
Query 341 ------ECFDKFK-------VNSTLEQYVFCTVNALPETT---ADIVVFDEISMATNYDL 384
+ + K + + + C P ++ DE + AT
Sbjct 569 LSSADEKRYRALKRTAERELLMNADVIWCTCVRAGDPRLAKMQFRSILIDESTQATEPKC 628
Query 385 SVVNARLRAKHYVYIGDPAQLPAP--RTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCR 442
+ L AK + ++ A + K + RL+ + L
Sbjct 629 -IGPVELGAKQLIL----GEITASWSCVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQY 683
Query 443 RCPAEIVDTVSALVYDNKLKAHKDKSAQC---------------FKMFYKGVITHDVS-- 485
R + S + Y+ L+ + F +G S
Sbjct 684 RMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQPEKPMFFYVTQGQEEIASSGT 743
Query 486 SAINRPQIGVVREFLTRN----PAWRKAVFISPYNSQN-----------AVASKILGLPT 530
S +NR + V + TR + I+PY Q ++ +K+ +
Sbjct 744 SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQVEI 803
Query 531 QTVDSSQGSEYDYVIFTQTTE-----TAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
+VD+ QG E D++I + + R NVA+TRAK G++ + + + L
Sbjct 804 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKAL 859
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
OX=559292 GN=ECM32 PE=1 SV=1
Length=1121
Score = 112 bits (281), Expect = 1e-24, Method: Composition-based stats.
Identities = 77/441 (17%), Positives = 141/441 (32%), Gaps = 133/441 (30%)
Query 270 QKVGMQKYSTLQGPPGTGKSHFAIGLALY----YPSARIVYTACSHAAVDALCEKALK-- 323
+ V + LQGPPGTGK+ + + + + I+ A S+ A+D + EK ++
Sbjct 658 EHVLNNSITILQGPPGTGKTSTIEEIIIQVIERFHAFPILCVAASNIAIDNIAEKIMENR 717
Query 324 --------------------------------YLPIDKCSRIIPARAR----------VE 341
Y + +++ + R +
Sbjct 718 PQIKILRILSKKKEQQYSDDHPLGEICLHNIVYKNLSPDMQVVANKTRRGEMISKSEDTK 777
Query 342 CFDK-----FKVNSTLEQYVFCTVNALPE-----TTADIVVFDEISMATNYDLSVVNARL 391
+ + KV S + + A +V+ DE + ++ V +
Sbjct 778 FYKEKNRVTNKVVSQSQIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLP 837
Query 392 RAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDT 451
+++V++GD QL + LE F V T + L T R +I +
Sbjct 838 GIRNFVFVGDEKQL---SSFSNIPQLETSLFERVLS-NGTYKNPLMLDTQYRMHPKISEF 893
Query 452 VSALVYDNKLKAHKDKSAQCFK------MFYKGVITHDVSSAINRPQI------------ 493
+Y+ +LK + + FY+ + + + I
Sbjct 894 PIKKIYNGELKDGVTDEQKAWPGVQHPLFFYQCDLGPESRVRSTQRDIVGFTYENKHECV 953
Query 494 GVVR----EFLTRNPAWRKAVFISPYNSQNAVASKIL----------------------- 526
+V+ L + + I+PY++Q + S IL
Sbjct 954 EIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELF 1013
Query 527 ---------------------GLPTQTVDSSQGSEYDYVIFTQTTE-----TAHSCNVNR 560
GL TVDS QG E ++IF+ + R
Sbjct 1014 NAAGSQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRR 1073
Query 561 FNVAITRAKVGILCIMSDRDL 581
NVA+TRAK G++ + + L
Sbjct 1074 LNVALTRAKHGLIVVGNKNVL 1094
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila
melanogaster OX=7227 GN=armi PE=1 SV=4
Length=1188
Score = 107 bits (268), Expect = 7e-23, Method: Composition-based stats.
Identities = 78/442 (18%), Positives = 130/442 (29%), Gaps = 124/442 (28%)
Query 253 YPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAI----GLALYYPSARIVYTA 308
NI + N+ L GPPG+GK+ I L P ARI+
Sbjct 704 RAVFNILRGEAENIPY----------VLFGPPGSGKTMTLIETLLQLVRNLPGARILVGT 753
Query 309 CSHAAVDALCEKALKY-------------LPIDKCSRIIPARARVE----------CFDK 345
S+++ D + ++ + + I P C DK
Sbjct 754 PSNSSADLVTKRLIDSKALLQGDFIRLVSYNQVEKDLIPPEIMSYCATSDVGAVGSCEDK 813
Query 346 FKVNSTLEQ------------YVFCTVNAL--------PETTADIVVFDEISMATNYD-- 383
V + + T L P V+FDE T +
Sbjct 814 MMVTESGLKLRCQAKFIGTHRITISTCTTLGNFLQLGFPAGHFTHVLFDEAGQCTEPETM 873
Query 384 LSVVNARLRAKHYVYIGDPAQLPAPRT--LLTKGT---------LEPEYFNSVCRLMKTI 432
+ +V + V GDP QL + T + +K LE + +
Sbjct 874 VPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPYRKDLQRFPES 933
Query 433 --GPDMFLGTC---RRCPAEIVDTVSALVYDNKLKAHKDKSA------------------ 469
+ L R I+ S L YD++L +
Sbjct 934 SGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFESEK 993
Query 470 ---QCFKMFYKGVIT-----HDVSSAINRPQIGVV----REFLTRNPAWRKAVFISPYNS 517
Q F+ G+I +D S N ++ V N + I+PY
Sbjct 994 DIPQAHGTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIALYRANVTADQIGIITPYQK 1053
Query 518 QNAVASKI-LGLP-----TQTVDSSQGSEYDYVIFTQTTET------------AHSCNVN 559
Q + + +G +V+ QG E D ++ + +
Sbjct 1054 QVKMLRSMFIGTDVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVRCSK 1113
Query 560 RFNVAITRAKVGILCIMSDRDL 581
R NVA++RA+ ++ I + L
Sbjct 1114 RLNVAVSRAR-AMMIIFGNPHL 1134
>sp|E9QAM5|HELZ2_MOUSE 3'-5' exoribonuclease HELZ2 OS=Mus musculus
OX=10090 GN=Helz2 PE=1 SV=1
Length=2947
Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/263 (22%), Positives = 92/263 (35%), Gaps = 57/263 (22%)
Query 371 VVFDEISMATNYD--LSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRL 428
++ DE MAT + + +V + V +GD QL P + + R
Sbjct 2654 ILIDEAGMATEPETLIPLVCFSKTVEKVVLLGDHKQL-RPVVKSEQLQSLGMDRSLFERY 2712
Query 429 MKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKS------AQCFK----MFYKG 478
+ + L T R +I S Y KLK D K + +
Sbjct 2713 HR---DAIMLDTQYRMHKDICSFPSVEFYGGKLKTWSDLRRLPSILGHTGKPSCSVIFGS 2769
Query 479 VITHD-----------VSSAINRPQIGVVREFLTRNPAWR-----KAVFISPYNSQNAVA 522
V H+ +S N ++ V + + R ++PYN+Q A
Sbjct 2770 VQGHEQKLLVSTEDGNENSRANPEEVTQVVRIIKQLTLDRTVDPKDIAVLTPYNAQAAAI 2829
Query 523 SK------ILGLPTQTVDSSQGSEYDYVIFTQTTE------------------TAHSCNV 558
S+ + G+ ++ SQGSE+ YVI + +
Sbjct 2830 SRGLMQRGVTGVTVTSITKSQGSEWRYVIVSTVRTCPRSDVDQRPTKSWLKKFLGFVVDP 2889
Query 559 NRFNVAITRAKVGILCIMSDRDL 581
++ NVAITRA+ LCI+ D L
Sbjct 2890 HQVNVAITRAQEA-LCIIGDHLL 2911
Score = 69.7 bits (169), Expect = 6e-11, Method: Composition-based stats.
Identities = 58/382 (15%), Positives = 102/382 (27%), Gaps = 77/382 (20%)
Query 279 TLQGPPGTGKSHFAIGLAL---YYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ GP GTGK++ AL P +++ +++A D + P
Sbjct 787 LIYGPFGTGKTYTLAMAALEVVQQPHTKVLICTHTNSAADIYIREYFHDYVSSGHPEATP 846
Query 336 ARARVECFDKFKVNSTLEQY------------------------VFCTVNA----LPETT 367
R + + T QY V T A +P
Sbjct 847 LRVMYADRPPRQTDPTTLQYCCLTEDRQAFRPPTGPELVHHRLVVTTTSQARELQVPAGF 906
Query 368 ADIVVFDEISMATNYDLSVVNA-RLRAKHYVYIGDPAQLPA-----PRTLLTKGTLEPEY 421
+ DE + + + + L V GD Q+ PR + TL
Sbjct 907 FSHIFIDEAAQMLECEALIPLSYALSLTRVVLAGDHMQVTPRLFSVPRDKSARHTLLHRL 966
Query 422 FNSVCRLMKTIGPD--MFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQC 471
F + I + R A I++ VS Y K +
Sbjct 967 FLYYQQEAHKIAQQSRIIFHENYRSTAAIINFVSHHFYLAKGNPIQASGKVPRHPQHYPL 1026
Query 472 FKMFYKGVITHDVS--SAINRPQIGVVREFLTR-NPAW---------------RKAVFIS 513
G D+S S +N ++ V E + W +S
Sbjct 1027 MFCHVAGSPEQDMSMTSWLNSAEVTQVVEKVREIYNTWPHCWGPREQRHICAVSHGAQVS 1086
Query 514 PYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTE-----------TAHSCNVNRFN 562
Q + + + + G E+ V+ + + N
Sbjct 1087 ALR-QELRRRNLGEVSVGSFEILPGREFRVVVLSSVHNRNSLLSPGAPTSEFFTEPRVLN 1145
Query 563 VAITRAKVGILCIMSDRDLYDK 584
+TRA+ ++ + L
Sbjct 1146 TVMTRAQSQLVAVGDAVALCSS 1167
Score = 37.7 bits (86), Expect = 0.41, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 64/191 (34%), Gaps = 30/191 (16%)
Query 275 QKYSTLQGPPGTGKSHFAIGLALYYPSAR----------------------IVYTACSHA 312
++++ +QGPPGTGK+ +G + Y R ++Y S+
Sbjct 2463 KQFTVIQGPPGTGKT--VVGFHIVYWFHRSNQEQMPTDSSPSGEEQLGGPCVLYCGPSNK 2520
Query 313 AVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVV 372
+VD L L+ K R+ +A F V++ ++ I +
Sbjct 2521 SVDVLGGLLLRRKTEMKPLRVYGEQAEATEFPLPGVSNRSLFGKTSQEGRPNQSLRSITL 2580
Query 373 FDEISMATNY---DLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLM 429
I A N ++ +A+LR D L R +L K +SV
Sbjct 2581 HHRIRQAPNPYAAEIRKFDAQLREGKIFSKED---LRVYRRVLGKARKHELERHSVILCT 2637
Query 430 KTIGPDMFLGT 440
+ L
Sbjct 2638 CSCAASKSLKI 2648
>sp|Q9BYK8|HELZ2_HUMAN 3'-5' exoribonuclease HELZ2 OS=Homo sapiens
OX=9606 GN=HELZ2 PE=1 SV=7
Length=2896
Score = 103 bits (257), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/263 (21%), Positives = 92/263 (35%), Gaps = 58/263 (22%)
Query 371 VVFDEISMATNYDLSVVNARL--RAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRL 428
++ DE MAT + +++ +A+ V +GD QL P + + R
Sbjct 2604 ILVDEAGMATEPE-TLIPLVQFPQAEKVVLLGDHKQL-RPVVKNERLQNLGLDRSLFERY 2661
Query 429 MKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLK--------------AHKDKSAQCFKM 474
+ L T R I S Y +KLK A K+ F
Sbjct 2662 HEDAH---MLDTQYRMHEGICAFPSVAFYKSKLKTWQGLRRPPSVLGHAGKESCPVIFGH 2718
Query 475 FYKGVITH-------DVSSAINRPQIGVVREFLTRNPAWR-----KAVFISPYNSQNAVA 522
+ + +S N ++ V + R ++PYN+Q +
Sbjct 2719 VQGHERSLLVSTDEGNENSKANLEEVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEI 2778
Query 523 SKIL------GLPTQTVDSSQGSEYDYVIFTQTTE------------------TAHSCNV 558
SK L G+ ++ SQGSE+ YV+ + +
Sbjct 2779 SKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDP 2838
Query 559 NRFNVAITRAKVGILCIMSDRDL 581
N+ NVA+TRA+ G LC++ D L
Sbjct 2839 NQVNVAVTRAQEG-LCLIGDHLL 2860
Score = 65.1 bits (157), Expect = 1e-09, Method: Composition-based stats.
Identities = 60/383 (16%), Positives = 118/383 (31%), Gaps = 85/383 (22%)
Query 279 TLQGPPGTGKSHFAIGLALYY------PSARIVYTACSHAAVD-ALCEKALKYLP--IDK 329
+ GP GTGK+ LA+ P +++ +++A D + E ++ +
Sbjct 788 LIYGPFGTGKT---YTLAMASLEVIRRPETKVLICTHTNSAADIYIREYFHSHVSGGHPE 844
Query 330 CS--RII----------PARARVECFDK----FKVNSTLE-----QYVFCTVNA----LP 364
+ R++ P + C F+ + E V T A +P
Sbjct 845 ATPLRVMYTDRPLSQTDPVTLQYCCLTDDRQAFRPPTRAELARHRVVVTTTSQARELRVP 904
Query 365 ETTADIVVFDEISMATNYD-LSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFN 423
++ DE + + L+ + V GD Q+ PR E+
Sbjct 905 VGFFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDHMQV-TPRLFSVARARAAEH-T 962
Query 424 SVCRLMKTIGPD---------MFLGTCRRCPAEIVDTVSALVY---------DNKLKAHK 465
+ RL + + RC IV +S Y K+ H
Sbjct 963 LLHRLFLCYQQETHEVARQSRLVFHENYRCTDAIVSFISRHFYVAKGNPIHARGKVPPHP 1022
Query 466 DKSAQCFKMFYKG-VITHDVSSAINRPQIGVVREFLT-RNPAW--------RKAVFISPY 515
F ++S +N +I V E + W ++ + + +
Sbjct 1023 RHYPLMFCHVAGSPDRDMSMASWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVSH 1082
Query 516 NSQNAVASKIL---GLPTQTVDSSQ---GSEYDYVIFTQTTETA-----------HSCNV 558
+Q + + L L +V S + G ++ V+ + +
Sbjct 1083 GAQVSALRQELRRRDLGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDA 1142
Query 559 NRFNVAITRAKVGILCIMSDRDL 581
N +TRA+ ++ + L
Sbjct 1143 RVLNTVLTRAQSQLVVVGDAVAL 1165
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2
OS=Caenorhabditis elegans OX=6239 GN=C05C10.2 PE=3 SV=2
Length=1523
Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/241 (26%), Positives = 95/241 (39%), Gaps = 31/241 (13%)
Query 367 TADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTL-EPEYFNSV 425
V DE S L + + IGD QLP +G L + N++
Sbjct 1174 DVCAVQIDEASQLAECTLLGLLKSFNNASFGLIGDIHQLPPYCEEGLEGKLKDFGIGNTM 1233
Query 426 CRLMKT-IGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQC------------- 471
R +K + P L RC + + +S L YD L + + A+
Sbjct 1234 ERAIKEKMFPVCTLRNVYRCHPKTTELLSELFYDGALVSGVSELARSDFMTKRDDFWPNP 1293
Query 472 -FKMFY---KGVITHDVSSAINRPQIGVVREFLT------RNP-AWRKAVFISPYNSQNA 520
F M + G T +S N + +V E + RNP IS Y++Q +
Sbjct 1294 KFPMMFVNNTGASTKMGTSTSNSSEKSIVGEIVQNLINDPRNPVNPSDIGVISFYSAQTS 1353
Query 521 VASKIL---GLPTQTVDSSQGSEYDYVIFTQTTE--TAHSCNVNRFNVAITRAKVGILCI 575
+ ++ L G+ TVD+ QGSE + +I T E + NR NVA++RAK + I
Sbjct 1354 ILTEHLRGSGVKCGTVDAFQGSEKEIIIMCSTNERISDFMQLSNRLNVAMSRAKQVTIII 1413
Query 576 M 576
Sbjct 1414 G 1414
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain
OS=Danio rerio OX=7955 GN=helz PE=2 SV=1
Length=1860
Score = 97.5 bits (241), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/390 (16%), Positives = 113/390 (29%), Gaps = 95/390 (24%)
Query 278 STLQGPPGTGKSHF---AIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRII 334
+ GP GTGK+ A+ L P +R++ S++A D + L
Sbjct 657 VLIIGPYGTGKTFTLAQAVKHILKQPESRVLICTHSNSAADLYIKDYLHPYVEAGNPHAR 716
Query 335 PARARVECFDKF-----KVNSTLE-----------------------QYVFCTVNALPET 366
P RV +++ + T L +
Sbjct 717 P--LRVYFRNRWVKTVHPLVQQYCLISGAHFTFQMPTRQDVERHRVVVVTLSTSQYLCQL 774
Query 367 T-----ADIVVFDEISMATNYDLSV-VNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
++ DE + A + + + +++ V GD QL ++ E
Sbjct 775 DLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVVLAGDHMQLSPFVY--SEFARERN 832
Query 421 YFNSVCRLMKTIGPD-----MFLGTCRRCPAEIVDTVSALVYDNKLK------AHKDKSA 469
S+ + P + L R I++ S L Y+ KL HKD
Sbjct 833 LHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSDLFYEGKLMASGKQPPHKDFYP 892
Query 470 QCFKMFYKGVITHDVSSA-INRPQIGVVREFL----TRNP------AWRKAVFISPYNSQ 518
F + S+A N ++ + E + + P +SPY Q
Sbjct 893 LTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVSWGKLEEGSIGVVSPYADQ 952
Query 519 NA------VASKILGLPTQTVDSSQGSEYDYVIFTQTT---------------------- 550
++ + + V + QG ++ + +
Sbjct 953 VFRIRAELRKKRMSEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDS 1012
Query 551 ----ETAHSCNVNRFNVAITRAKVGILCIM 576
+ N N AITRA+ + +
Sbjct 1013 TEDLDYGFLSNYKLLNTAITRAQSLVAVVG 1042
>sp|E9P860|ZNFX1_CAEEL NFX1-type zinc finger-containing protein
1 homolog OS=Caenorhabditis elegans OX=6239 GN=znfx-1 PE=1
SV=1
Length=2443
Score = 95.9 bits (237), Expect = 4e-19, Method: Composition-based stats.
Identities = 58/257 (23%), Positives = 101/257 (39%), Gaps = 43/257 (17%)
Query 370 IVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVC-RL 428
I++ +E + + +H V IGD QL P + + + S+ RL
Sbjct 1463 ILIVEEAAEVLEAHIISAMIS-TVEHVVMIGDHKQL-RPNPAVHELGVAYGLRISMFERL 1520
Query 429 MKTIGPDMFLGTCRRCPAEIVDTVSAL-VYDNKLKA-----HKDKSAQCFKMFYKGVITH 482
++ P L R I D + L YDN A + D +F+ +
Sbjct 1521 VERGLPFSQLRQQHRMNLTISDKIVKLSFYDNVTDAENVGLYPDVQGMATNLFFWSHTSM 1580
Query 483 DVS----SAINRPQIGV----VREFLTRNPAWRKAVFISPYNSQNAVASK----ILG--- 527
+ S S +N+ +I + V+ L +N V ++ Y++Q + + + G
Sbjct 1581 EESPDEVSWLNKHEISMTVALVKHLLKQNYTTNDIVVLATYSAQKNLMYREYANVFGSTP 1640
Query 528 ----LPTQTVDSSQGSEYDYVIFTQTTE---------TAHSCNVNRFNVAITRAKVGILC 574
+P +TVDS QG E VI + NR VA+TRA+ G+
Sbjct 1641 DSNVIPVETVDSFQGKERKIVIVSLVRSHRGGRENTGIGFLAVANRICVALTRAQHGMYI 1700
Query 575 ------IMSDRDLYDKL 585
IM++ +L++K+
Sbjct 1701 IGNGAYIMNNSELWNKI 1717
Score = 42.0 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 8/63 (13%)
Query 274 MQKYSTLQGPPGTGKSHFAIGLALYYPSAR--------IVYTACSHAAVDALCEKALKYL 325
+ S +QGPPGTGK+H + + R I+ +++ +D L E+ + +
Sbjct 1053 KYELSLIQGPPGTGKTHIGVQIVKTILQNRSYWKITEPILVVCFTNSGLDNLLERIYQMI 1112
Query 326 PID 328
D
Sbjct 1113 END 1115
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein
1 OS=Mus musculus OX=10090 GN=Znfx1 PE=1 SV=3
Length=1909
Score = 92.1 bits (227), Expect = 6e-18, Method: Composition-based stats.
Identities = 49/237 (21%), Positives = 87/237 (37%), Gaps = 26/237 (11%)
Query 370 IVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLM 429
IV+ +E + ++ +H + IGD QL + + RL+
Sbjct 995 IVIVEEAAEVLEAH-TIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLV 1053
Query 430 KTIGPDMFLGTCRRCPAEIVDTVSALVYDN--------KLKAHKDKSAQCFKMFYKGVIT 481
K P + L R EI ++ +Y + K + K S+ F + +
Sbjct 1054 KVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYEQIKGVSSNLFFVEHNFPEQ 1113
Query 482 --HDVSSAINRPQIGVVREF----LTRNPAWRKAVFISPYNSQNAVASKIL------GLP 529
+ S N+ + V E L + + ++ Y Q K++ G+
Sbjct 1114 EIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQITILTTYTGQLFCLRKLMPVKTFAGIK 1173
Query 530 TQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
VD QG E D ++ + Q + NR VA++RAK G+ CI + + L
Sbjct 1174 VHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQML 1230
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein
1 OS=Homo sapiens OX=9606 GN=ZNFX1 PE=1 SV=2
Length=1918
Score = 91.3 bits (225), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 26/237 (11%)
Query 370 IVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLM 429
IV+ +E + ++ +H + IGD QL + + RL+
Sbjct 1002 IVIVEEAAEVLEAH-TIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLV 1060
Query 430 KTIGPDMFLGTCRRCPAEIVDTVSALVYDN--------KLKAHKDKSAQCFKMFYKGVIT 481
K P + L R EI ++ +Y + K + K S+ F + +
Sbjct 1061 KVNIPFVRLNYQHRMCPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQ 1120
Query 482 --HDVSSAINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL------GLP 529
+ S N+ + V E FL + + ++ Y Q K++ G+
Sbjct 1121 EIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVR 1180
Query 530 TQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
VD QG E D ++ + Q + NR VA++RAK G+ CI + + L
Sbjct 1181 VHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQML 1237
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain
OS=Mus musculus OX=10090 GN=Helz PE=1 SV=2
Length=1964
Score = 86.7 bits (213), Expect = 3e-16, Method: Composition-based stats.
Identities = 66/390 (17%), Positives = 107/390 (27%), Gaps = 95/390 (24%)
Query 278 STLQGPPGTGKSHFAIGLA---LYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRII 334
+ GP GTGK+ A L RI+ S++A D + L +
Sbjct 664 VLIIGPYGTGKTFTLAQAAKHILQQQETRILICTHSNSAADLYIKDYLHPYVEAGNPQAR 723
Query 335 PARARVECFDKF-----KVNSTLE-----------------------QYVFCTVNALPET 366
P RV +++ V T L +
Sbjct 724 P--LRVYFRNRWVKTVHPVVHQYCLISSTQSTFQMPQKEDILKHRVVVVTLSTSQYLCQL 781
Query 367 T-----ADIVVFDEISMATNYDLSV-VNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
V+ DE + A + + + + V GD QL ++ E
Sbjct 782 DLEPGFFTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVY--SEFARERN 839
Query 421 YFNSVCRLMKTIGPDMF-----LGTCRRCPAEIVDTVSALVYDNKLK------AHKDKSA 469
S+ + P F L R I++ S L Y+ KL AHKD
Sbjct 840 LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP 899
Query 470 QCFKMFYKGVITHDVSSAI--NRPQIGVVREFLTRNPAWRKA---------VFISPYNSQ 518
F + S+A N VV W A ++PY Q
Sbjct 900 LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ 959
Query 519 NA------VASKILGLPTQTVDSSQGSEYDYVIFTQTT---------------------- 550
++ + + V + QG ++ + +
Sbjct 960 VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS 1019
Query 551 ----ETAHSCNVNRFNVAITRAKVGILCIM 576
+ N N AITRA+ + +
Sbjct 1020 TEDLDYGFLSNYKLLNTAITRAQSLVAVVG 1049
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain
OS=Homo sapiens OX=9606 GN=HELZ PE=1 SV=2
Length=1942
Score = 84.7 bits (208), Expect = 1e-15, Method: Composition-based stats.
Identities = 65/390 (17%), Positives = 108/390 (28%), Gaps = 95/390 (24%)
Query 278 STLQGPPGTGKSHF---AIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRII 334
+ GP GTGK+ A+ L RI+ S++A D + L +
Sbjct 664 VLIIGPYGTGKTFTLAQAVKHILQQQETRILICTHSNSAADLYIKDYLHPYVEAGNPQAR 723
Query 335 PARARVECFDKF-----KVNSTLE-----------------------QYVFCTVNALPET 366
P RV +++ V T L +
Sbjct 724 P--LRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLCQL 781
Query 367 T-----ADIVVFDEISMATNYDLSV-VNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPE 420
++ DE + A + + + + V GD QL ++ E
Sbjct 782 DLEPGFFTHILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPFVY--SEFARERN 839
Query 421 YFNSVCRLMKTIGPDMF-----LGTCRRCPAEIVDTVSALVYDNKLK------AHKDKSA 469
S+ + P F L R I++ S L Y+ KL AHKD
Sbjct 840 LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP 899
Query 470 QCFKMFYKGVITHDVSSAI--NRPQIGVVREFLTRNPAWRKA---------VFISPYNSQ 518
F + S+A N VV W A ++PY Q
Sbjct 900 LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ 959
Query 519 NA------VASKILGLPTQTVDSSQGSEYDYVIFTQTT---------------------- 550
++ + + V + QG ++ + +
Sbjct 960 VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS 1019
Query 551 ----ETAHSCNVNRFNVAITRAKVGILCIM 576
+ N N AITRA+ + +
Sbjct 1020 TEDLDYGFLSNYKLLNTAITRAQSLVAVVG 1049
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease
DNA2 OS=Xenopus tropicalis OX=8364 GN=dna2 PE=3 SV=1
Length=1048
Score = 81.3 bits (199), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/383 (17%), Positives = 112/383 (29%), Gaps = 84/383 (22%)
Query 275 QKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRII 334
+ Y+ + G PGTGK+ L + C+ VD E A + +
Sbjct 642 KDYTLIVGMPGTGKTTTICTLVST-----LHLKTCTSCLVDDHREAAGTHRSHRHSKGTV 696
Query 335 -----PARARVECFDKF---KVNSTLEQYVFCTVNALPET----TADIVVFDEISMATNY 382
+ RV K S E V L + I+V + + N
Sbjct 697 NLGKQKRQHRVTSTTSSTSAKCRSKTEPAVSAENKKLQKLISGSHVCIMVNGHKTFSQNN 756
Query 383 DLSVVNARLRAKH------YVYIGDPAQL----PAPRTLLTKGTLEPEYFNSVCRLMKTI 432
+ + L K + Q +L+ + + F + R + +
Sbjct 757 YIIFFDNILLLKKLPLHYMCAFALIHHQCFKGCVKSVSLVRELGMSESLFKRLERNQEAV 816
Query 433 GPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKD-------------------------- 466
L R ++I+ + LVY+ +L+ D
Sbjct 817 VQ---LTVQYRMNSQIMALSNKLVYEGRLECASDRVSNAVVKLPHIKTLLLELEFRESQE 873
Query 467 ----------KSAQCFKMFYK--GVITHDVSSAINRPQIGVV----REFLTRNPAWRKAV 510
+ CF K + T + N + +V + FL
Sbjct 874 SMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFCLTKLFLKAGCRPSDIG 933
Query 511 FISPYNSQNAVAS------KILGLPTQTVDSSQGSEYDYVIFTQTTET------AHSCNV 558
I+PY Q V S + TVD QG + +I + +
Sbjct 934 IIAPYRQQLKVISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDW 993
Query 559 NRFNVAITRAKVGILCIMSDRDL 581
R NVA+TRAK ++ + L
Sbjct 994 RRLNVALTRAKHKLIMLGCVPTL 1016
>sp|Q8CFQ3|AQR_MOUSE RNA helicase aquarius OS=Mus musculus OX=10090
GN=Aqr PE=1 SV=2
Length=1481
Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/294 (19%), Positives = 95/294 (32%), Gaps = 67/294 (23%)
Query 348 VNSTLEQYVFCTVNALPETT-------ADIVVFDEISMATNYDLSVVNARL--------R 392
V + CT AL D ++ +E + + + + L R
Sbjct 1033 VKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIE-TFIPLLLQNPQDGFSR 1091
Query 393 AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRR-----CP-- 445
K ++ IGD QLP + + R ++ P + L R C
Sbjct 1092 LKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLY 1151
Query 446 ----------------AEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAIN 489
E + L+YD +L +D G + N
Sbjct 1152 NWRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDFQGV-------GESEPNPYFYQN 1204
Query 490 RPQIGVVREF-----LTRNPAWRKAVFISPYNSQNAVASKILGL------------PTQT 532
+ V L PA + + ++ YN Q + I+ T
Sbjct 1205 LGEAEYVVALFMYMCLLGYPADKIS-ILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTT 1263
Query 533 VDSSQGSEYDYVIFT--QTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDK 584
VD QG + DY++ + +T H +V R VA++RA++G L I + L+
Sbjct 1264 VDRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAMSRARLG-LYIFARVSLFQN 1316
Score = 40.8 bits (94), Expect = 0.047, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 10/95 (11%)
Query 237 APTLVPQEHYVRITGLYPTLNISDEFSSNVANYQ----KVGMQK-YSTLQGPPGTGKSHF 291
A TL+ + H + G YP N + + Q + GMQ + + GPPGTGK+
Sbjct 774 AKTLIVEPHVIPNRGPYP-YNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDV 832
Query 292 AIG----LALYYPSARIVYTACSHAAVDALCEKAL 322
A+ + +P R + S+ A++ L EK +
Sbjct 833 AVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIM 867
>sp|O60306|AQR_HUMAN RNA helicase aquarius OS=Homo sapiens OX=9606
GN=AQR PE=1 SV=4
Length=1485
Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/294 (19%), Positives = 95/294 (32%), Gaps = 67/294 (23%)
Query 348 VNSTLEQYVFCTVNALPETT-------ADIVVFDEISMATNYDLSVVNARL--------R 392
V + CT AL D ++ +E + + + + L R
Sbjct 1029 VKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIE-TFIPLLLQNPQDGFSR 1087
Query 393 AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRR-----CP-- 445
K ++ IGD QLP + + R ++ P + L R C
Sbjct 1088 LKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLY 1147
Query 446 ----------------AEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAIN 489
E + L+YD +L +D G + N
Sbjct 1148 NWRYKNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDFQGV-------GESEPNPYFYQN 1200
Query 490 RPQIGVVREF-----LTRNPAWRKAVFISPYNSQNAVASKILGL------------PTQT 532
+ V L PA + + ++ YN Q + I+ T
Sbjct 1201 LGEAEYVVALFMYMCLLGYPADKIS-ILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTT 1259
Query 533 VDSSQGSEYDYVIFT--QTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDK 584
VD QG + DY++ + +T H +V R VA++RA++G L I + L+
Sbjct 1260 VDRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAMSRARLG-LYIFARVSLFQN 1312
Score = 40.8 bits (94), Expect = 0.047, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 10/95 (11%)
Query 237 APTLVPQEHYVRITGLYPTLNISDEFSSNVANYQ----KVGMQK-YSTLQGPPGTGKSHF 291
A TL+ + H + G YP N + + Q + GMQ + + GPPGTGK+
Sbjct 774 AKTLIVEPHVIPNRGPYP-YNQPKRNTIQFTHTQIEAIRAGMQPGLTMVVGPPGTGKTDV 832
Query 292 AIG----LALYYPSARIVYTACSHAAVDALCEKAL 322
A+ + +P R + S+ A++ L EK +
Sbjct 833 AVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIM 867
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin
assembly 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) OX=284812 GN=hrr1 PE=1 SV=2
Length=999
Score = 80.1 bits (196), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/253 (19%), Positives = 87/253 (34%), Gaps = 35/253 (14%)
Query 363 LPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYF 422
L I +E + + + V IGD QL R + L + F
Sbjct 700 LERINPKICFIEEAADVLEGPIIPAVFP-SLEQLVLIGDHKQL---RPGCSTYALRQDPF 755
Query 423 NS----VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN------KLKAHKDKSAQCF 472
N RL++ L RR +I VS++ D K +
Sbjct 756 NLSISMFERLVENDMEYTRLTMQRRMHPQIRRLVSSVYEDLSDYEITKYWPSIPGMGEIR 815
Query 473 KMFYKGVITHDV---SSAINRPQIGVVREF----LTRNPAWRKAVFISPYNSQNAVASKI 525
+ F D +S IN + ++ +F + +K ++ Y +Q + ++
Sbjct 816 RFFLTHSRIEDNDGFASKINLFEAQMLVQFAVYLINNGVEPQKITCLTFYAAQKDLIERL 875
Query 526 LG---------LPTQTVDSSQGSEYDYVIFTQTT-----ETAHSCNVNRFNVAITRAKVG 571
L + TVD QG E D V+ + E + +R V+++RA+ G
Sbjct 876 LSESLNREKHFIKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRG 935
Query 572 ILCIMSDRDLYDK 584
+ + + + +
Sbjct 936 LFIFGNAQLVAES 948
Score = 37.4 bits (85), Expect = 0.42, Method: Composition-based stats.
Identities = 23/66 (35%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query 263 SSNVANYQKVGMQKYSTLQGPPGTGKSHF---AIGLALYYPSARIV--YTAC-SHAAVDA 316
SS + YQ + ++ S +QGPPGTGKS AI L + ++ AC ++ AVD
Sbjct 374 SSQLKAYQSMLTKRLSIIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAVDQ 433
Query 317 LCEKAL 322
+ + L
Sbjct 434 ILIRLL 439
>sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrogenase
elevating virus (strain Plagemann) OX=300016 GN=rep
PE=1 SV=2
Length=3616
Score = 69.7 bits (169), Expect = 6e-11, Method: Composition-based stats.
Identities = 64/314 (20%), Positives = 102/314 (32%), Gaps = 71/314 (23%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + G PGTGK+ + + + ++YT +H + + KALK D P
Sbjct 2986 RSQFVTGAPGTGKTTYLLSVV---RDDDVIYT-PTHRTMLDV-VKALKVCRFD------P 3034
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKH 395
+ F T +P + DE + D+ V ++
Sbjct 3035 PKDTPLEFPV--PGRTGPTVRLIGAGFVP---GRVSYLDEAAYCNPLDVLKVLSK---TP 3086
Query 396 YVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSAL 455
V +GD QLP P FN C ++ P L R +V+++
Sbjct 3087 LVCVGDLNQLP------------PVGFNGPCFAF-SLMPGRQLIEVFRFGPAVVNSI-KK 3132
Query 456 VYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPY 515
Y +L + +FL + + ++PY
Sbjct 3133 FYKEELVPRGPDTG---------------------------VKFLKQYQPY--GQVLTPY 3163
Query 516 NSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCI 575
+ + T+DSSQG YD V T T S N R VA+TRA+ +
Sbjct 3164 HRDRVDGA-------ITIDSSQGCTYDVV--TVYLPTPKSLNSARALVALTRARHYVFIY 3214
Query 576 MSDRDLYDKLQFTS 589
L LQ
Sbjct 3215 DPYDQLQQYLQVFE 3228
>sp|P47386|Y140_MYCGE Uncharacterized ATP-dependent helicase MG140
OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775
/ NCTC 10195 / G37) OX=243273 GN=MG140 PE=3 SV=1
Length=1113
Score = 67.8 bits (164), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/277 (20%), Positives = 98/277 (35%), Gaps = 52/277 (19%)
Query 351 TLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRT 410
TLE T N D VV DE S + RA Y+ GD QL
Sbjct 681 TLESAATLTPNQ--RGLYDYVVIDEASQVFLERA--IPILFRADKYIIAGDTKQLKPANF 736
Query 411 LLTKGTLEPE------------YFNSVCRLMKTIGPDMFLGT-CRRC-PAEIVDTVSALV 456
++ + + + +S+ +K + L R A+++ + +
Sbjct 737 FQSRAEYDVDEEFEDGNIEAAVHSSSLLHFLKNRSRILTLLKFHYRSDSADLIAFTNNRI 796
Query 457 YDNKL----KAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFI 512
YDN+L KA+ D+ G+ ++ + R + + + T N + I
Sbjct 797 YDNELIFMNKANADQRVFIVHDVIDGIWKNNRNLQEARDVVQRLEQLTTTNDYKKSLGVI 856
Query 513 SPYNSQNAVASKIL----------------------GLPTQTVDSSQGSEYDYVIFTQTT 550
+Q + ++ GL + +++ QG E D +IF+
Sbjct 857 CFNKNQADLIEYLIDKQNNPLLNEWRERQNDVGEYEGLFVKNIENVQGDERDIIIFSLGY 916
Query 551 ETAHSC--------NVNRFNVAITRAKVGILCIMSDR 579
+ + + NR NVAITRAK I ++R
Sbjct 917 DRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNR 953
Score = 37.0 bits (84), Expect = 0.58, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 49/110 (45%), Gaps = 8/110 (7%)
Query 256 LNISDEFS-SNVANYQKVGMQKYST----LQGPPGTGKSHFAIGL--ALYYPSARIVYTA 308
++ D + S++ YQ+ +++ ++GPPGTGKS + + L + ++++ +
Sbjct 282 FDLKDTYLFSHLDIYQQYAVKQALLGDLIIEGPPGTGKSETIVNILVNLVLNNKKVLFVS 341
Query 309 CSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFC 358
A+D + + + I + + A + +++F T F
Sbjct 342 EKVTALDVVYNRLGSFKHIALFNASVAAEKK-RFYNQFAEFETYFTTYFS 390
>sp|P75033|Y153_MYCPN Uncharacterized ATP-dependent helicase MG140
homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129
/ Subtype 1) OX=272634 GN=MPN_153 PE=3 SV=1
Length=1113
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/282 (18%), Positives = 90/282 (32%), Gaps = 60/282 (21%)
Query 351 TLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRT 410
T E T N D VV DE S Y + R Y+ GD QL
Sbjct 681 TFESAALLTPNQ--RRLYDYVVIDEASQV--YLERAIPILYRGAKYIIAGDTKQLKPSNF 736
Query 411 LLTKGTLEPE------------YFNSVCRLMKTIGPDMFLGT-CRRC-PAEIVDTVSALV 456
+ + + + S+ +K + L R A ++ + +
Sbjct 737 FQARAEYDVDEEFEDGNVEAAVHSTSLLHFLKNRSRILTLLKFHYRSDSANLIAFTNNRI 796
Query 457 YDNKLK-AHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAW-------RK 508
Y+N+L +K + + + + N + R+ + R +
Sbjct 797 YNNELIFMNKATADKQVFIVH----DVIDGIWRNNRNLQEARDVVQRLEQLTQTAEYQKS 852
Query 509 AVFISPYNSQNAVASKIL----------------------GLPTQTVDSSQGSEYDYVIF 546
I +Q + ++ GL + +++ QG E D +IF
Sbjct 853 LGVICFNKNQAELIEYMIDKQNNPLLNEWRDRVNAQGEYVGLFVKNIENVQGDERDIIIF 912
Query 547 TQTTETAHSC--------NVNRFNVAITRAKVGILCIMSDRD 580
+ + + + NR NVAITRAK I ++R
Sbjct 913 SLGYDRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNRA 954
>sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrogenase
elevating virus (strain C) OX=300015 GN=rep PE=3 SV=2
Length=3637
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/314 (19%), Positives = 93/314 (30%), Gaps = 71/314 (23%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + G PGTGK+ + L ++YT +H + + + R P
Sbjct 3007 RSQFITGAPGTGKTTY---LLSVVRDDDVIYT-PTHRTMLDVVKAL-------GTCRFDP 3055
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKH 395
+ F + T +P + DE + D+ + L
Sbjct 3056 PKDTPLEFPV--PSRTGPCVRLIRAGFIP---GRVSYLDEAAYCNPLDVLKI---LSKTP 3107
Query 396 YVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSAL 455
V +GD QLP P F C + L R IV+
Sbjct 3108 LVCVGDLNQLP------------PVDFIGPCYAF-ALMLGRQLIEVFRFGPSIVN-PIKK 3153
Query 456 VYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPY 515
Y +L + + +FL + ++PY
Sbjct 3154 FYREELVSRGPDTG---------------------------VKFLKSYQPY--GQVLTPY 3184
Query 516 NSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCI 575
+ + T+DSSQG YD + T T S N R VAITRA+ +
Sbjct 3185 HRDRVDGA-------ITIDSSQGCTYDVI--TVYLPTPKSLNSARALVAITRARFYVFVY 3235
Query 576 MSDRDLYDKLQFTS 589
L L +
Sbjct 3236 DPHNQLEQYLNMSE 3249
>sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus (strain HB-1) OX=300563
GN=rep PE=2 SV=3
Length=3961
Score = 62.4 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 64/307 (21%), Positives = 99/307 (32%), Gaps = 73/307 (24%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALK-YLPIDKCSRII 334
+ + GPPG GK+H+ + ++YT +H + + + + +
Sbjct 3287 RSRFIIGPPGAGKTHWLLQQV---QDGDVIYT-PTHQTMLDMIRALGTCRFNVPAGTTL- 3341
Query 335 PARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK 394
+F S +V + DE + + D V L
Sbjct 3342 ----------QFPAPSRTGPWVRILAGGWCPGKNSFL--DEAAYCNHLD---VLRLLSKT 3386
Query 395 HYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSA 454
+GD QL P F+S C + I P L T R I D +
Sbjct 3387 TLTCLGDFKQL------------HPVGFDSHCYVF-DIMPQTQLKTIWRFGQNICDAIQP 3433
Query 455 LVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
Y +KL S +N ++ V + R ++P
Sbjct 3434 D-YRDKLV-----------------------SMVNTTRVTYVEK------PVRYGQVLTP 3463
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILC 574
Y+ + T+DSSQG+ +D V T T S N R VAITRA+ I
Sbjct 3464 YHRDREDGA-------ITIDSSQGATFDVV--TLHLPTKDSLNRQRALVAITRARHAIFV 3514
Query 575 IMSDRDL 581
R L
Sbjct 3515 YDPHRQL 3521
>sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus OX=28344 PE=1 SV=2
Length=3931
Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 64/307 (21%), Positives = 99/307 (32%), Gaps = 73/307 (24%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALK-YLPIDKCSRII 334
+ + GPPG GK+H+ + ++YT +H + + + + +
Sbjct 3257 RSRFIIGPPGAGKTHWLLQQV---QDGDVIYT-PTHQTMLDMIRALGTCRFNVPAGTTL- 3311
Query 335 PARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK 394
+F S +V + DE + + D V L
Sbjct 3312 ----------QFPAPSRTGPWVRILAGGWCPGKNSFL--DEAAYCNHLD---VLRLLSKT 3356
Query 395 HYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSA 454
+GD QL P F+S C + I P L T R I D +
Sbjct 3357 TLTCLGDFKQL------------HPVGFDSHCYVF-DIMPQTQLKTIWRFGQNICDAIQP 3403
Query 455 LVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
Y +KL S +N ++ V + R ++P
Sbjct 3404 D-YRDKL-----------------------MSMVNTTRVTYVEK------PVRYGQVLTP 3433
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILC 574
Y+ + T+DSSQG+ +D V T T S N R VAITRA+ I
Sbjct 3434 YHRDREDGA-------ITIDSSQGATFDVV--TLHLPTKDSLNRQRALVAITRARHAIFV 3484
Query 575 IMSDRDL 581
R L
Sbjct 3485 YDPHRQL 3491
>sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus (isolate Pig/United
States/SD 01-08/2001) OX=857306 PE=1 SV=2
Length=3838
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/312 (19%), Positives = 97/312 (31%), Gaps = 73/312 (23%)
Query 279 TLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKA-LKYLPIDKCSRIIPAR 337
+ GPPG+GK+ + + ++YT +H + + + I S +
Sbjct 3166 FIVGPPGSGKTTWLLSQV---QDDDVIYT-PTHQTMFDIVSALKVCRYSIPGASGL---- 3217
Query 338 ARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYV 397
F + +V + + DE + D + L V
Sbjct 3218 -------PFPPPARSGPWVRLVASGHVPGRTSYL--DEAGYCNHLD---ILRLLSKTPLV 3265
Query 398 YIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVY 457
+GD QL P F+S C + + P L T R I + Y
Sbjct 3266 CLGDLQQL------------HPVGFDSYCYVFDQM-PQKQLTTIYRFGPNICAAI-QPCY 3311
Query 458 DNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNS 517
KL++ + F + ++PY+
Sbjct 3312 REKLESKARNTRVVFTTW-----------------------------PVAFGQVLTPYHK 3342
Query 518 QNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMS 577
+G T+DSSQG+ +D I T + S N +R VAITRA+ G+
Sbjct 3343 DR------IGSAI-TIDSSQGATFD--IVTLHLPSPKSLNKSRALVAITRARHGLFIYDP 3393
Query 578 DRDLYDKLQFTS 589
L +
Sbjct 3394 HNQLQEFFNLIP 3405
>sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus (strain VR-2332) OX=300559
GN=rep PE=1 SV=2
Length=3960
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 64/307 (21%), Positives = 99/307 (32%), Gaps = 73/307 (24%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALK-YLPIDKCSRII 334
+ + GPPG GK+++ + ++YT +H + + + + +
Sbjct 3286 RSRFIIGPPGAGKTYWLLQQV---QDGDVIYT-PTHQTMLDMIRALGTCRFNVPAGTTL- 3340
Query 335 PARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK 394
+F V S +V + DE + + D V L
Sbjct 3341 ----------QFPVPSRTGPWVRILAGGWCPGKNSFL--DEAAYCNHLD---VLRLLSKT 3385
Query 395 HYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSA 454
+GD QL P F+S C + I P L T R I D +
Sbjct 3386 TLTCLGDFKQL------------HPVGFDSHCYVF-DIMPQTQLKTIWRFGQNICDAIQP 3432
Query 455 LVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
Y +KL S +N ++ V + R ++P
Sbjct 3433 D-YRDKL-----------------------MSMVNTTRVTYVEK------PVRYGQVLTP 3462
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILC 574
Y+ T+DSSQG+ +D V T T S N R VAITRA+ I
Sbjct 3463 YHRDRED-------DAITIDSSQGATFDVV--TLHLPTKDSLNRQRALVAITRARHAIFV 3513
Query 575 IMSDRDL 581
R L
Sbjct 3514 YDPHRQL 3520
>sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus (strain 16244B) OX=300561
GN=rep PE=1 SV=3
Length=3961
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 64/307 (21%), Positives = 99/307 (32%), Gaps = 73/307 (24%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALK-YLPIDKCSRII 334
+ + GPPG GK+++ + ++YT +H + + + + +
Sbjct 3287 RSRFIIGPPGAGKTYWLLQQV---QDGDVIYT-PTHQTMLDMIRALGTCRFNVPAGTTL- 3341
Query 335 PARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK 394
+F V S +V + DE + + D V L
Sbjct 3342 ----------QFPVPSRTGPWVRILAGGWCPGKNSFL--DEAAYCNHLD---VLRLLSKT 3386
Query 395 HYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSA 454
+GD QL P F+S C + I P L T R I D +
Sbjct 3387 TLTCLGDFKQL------------HPVGFDSHCYVF-DIMPQTQLKTIWRFGQNICDAIQP 3433
Query 455 LVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
Y +KL S +N ++ V + R ++P
Sbjct 3434 D-YRDKL-----------------------MSMVNTTRVTYVEK------PVRYGQVLTP 3463
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILC 574
Y+ T+DSSQG+ +D V T T S N R VAITRA+ I
Sbjct 3464 YHRDRED-------DAITIDSSQGATFDVV--TLHLPTKDSLNRQRALVAITRARHAIFV 3514
Query 575 IMSDRDL 581
R L
Sbjct 3515 YDPHRQL 3521
>sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reproductive
and respiratory syndrome virus (strain Lelystad) OX=11049
GN=rep PE=1 SV=3
Length=3855
Score = 59.7 bits (143), Expect = 7e-08, Method: Composition-based stats.
Identities = 59/315 (19%), Positives = 99/315 (31%), Gaps = 79/315 (25%)
Query 279 TLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKA-LKYLPIDKCSRIIPAR 337
+ GPPG+GK+ + + ++YT +H + + + I S +
Sbjct 3183 FIVGPPGSGKTTWLLSQV---QDDDVIYT-PTHQTMFDIVSALKVCRYSIPGASGL---- 3234
Query 338 ARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYV 397
F + +V + + DE + D + L V
Sbjct 3235 -------PFPPPARSGPWVRLIASG--HVPGRVSYLDEAGYCNHLD---ILRLLSKTPLV 3282
Query 398 YIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVY 457
+GD QL P F+S C + + P L T R I + Y
Sbjct 3283 CLGDLQQL------------HPVGFDSYCYVFDQM-PQKQLTTIYRFGPNICAAI-QPCY 3328
Query 458 DNKLKAHKDKSAQCF---KMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
KL++ + F + + ++P
Sbjct 3329 REKLESKARNTRVVFTTRPVAFG--------------------------------QVLTP 3356
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILC 574
Y+ +G T+DSSQG+ +D I T + S N +R VAITRA+ G+
Sbjct 3357 YHKDR------IGSAI-TIDSSQGATFD--IVTLHLPSPKSLNKSRALVAITRARHGLFI 3407
Query 575 IMSDRDLYDKLQFTS 589
L + T
Sbjct 3408 YDPHNQLQEFFNLTP 3422
>sp|Q306W8|POLN_EEEV8 Polyprotein P1234 OS=Eastern equine encephalitis
virus (strain PE-3.0815) OX=374597 PE=1 SV=3
Length=2474
Score = 58.5 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 56/294 (19%), Positives = 99/294 (34%), Gaps = 56/294 (19%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS G+ + R + + + C+ II R
Sbjct 717 VYGVPGSGKS----GIIKSAVTKRDLVVSA----------------KKENCTEIIKDVKR 756
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI 399
+ D T++ + N + + D + DE L + A ++ K V
Sbjct 757 MRGMDI--AARTVDSVLL---NGV-KHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLC 810
Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN 459
GDP Q + K + RRC + VS L YD
Sbjct 811 GDPKQCGFFNMMCLKVHFN----------HEICTEVYHKSISRRCTKTVTAIVSTLFYDK 860
Query 460 KLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519
+++ S + +++ +PQ + LT W K + I N +
Sbjct 861 RMRTVNPCSDKI----------IIDTTSTTKPQRDDII--LTCFRGWVKQLQIDYKNHEI 908
Query 520 AVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGIL 573
A+ GL + V + + + ++ QT+E NV +TR + I+
Sbjct 909 MTAAASQGLTRKGVYAVRYKVNENPLYAQTSE--------HVNVLLTRTEKRIV 954
>sp|Q4QXJ8|POLN_EEEVF Polyprotein P1234 OS=Eastern equine encephalitis
virus (strain Florida 91-469) OX=374598 PE=1 SV=3
Length=2494
Score = 57.0 bits (136), Expect = 5e-07, Method: Composition-based stats.
Identities = 55/294 (19%), Positives = 96/294 (33%), Gaps = 56/294 (19%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS G+ + R + + + C II R
Sbjct 717 VYGVPGSGKS----GIIKSAVTKRDLVVSA----------------KKENCMEIIKDVKR 756
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI 399
+ D T++ + N + + + D + DE L + A ++ K V
Sbjct 757 MRGMDI--AARTVDSVLL---NGV-KHSVDTLYIDEAFACHAGTLLALIAIVKPKKVVLC 810
Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN 459
GDP Q + K + RRC + VS L YD
Sbjct 811 GDPKQCGFFNMMCLKVHFN----------HEICTEVYHKSISRRCTKTVTSIVSTLFYDK 860
Query 460 KLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519
+++ + + D +S + LT W K + I N +
Sbjct 861 RMRTVNPCNDKII---------IDTTST---TKPLKDDIILTCFRGWVKQLQIDYKNHEI 908
Query 520 AVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGIL 573
A+ GL + V + + + ++ QT+E NV +TR + I+
Sbjct 909 MTAAASQGLTRKGVYAVRYKVNENPLYAQTSE--------HVNVLLTRTEKRIV 954
>sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteritis
virus (strain Bucyrus) OX=299386 GN=rep PE=1 SV=3
Length=3175
Score = 56.6 bits (135), Expect = 6e-07, Method: Composition-based stats.
Identities = 69/340 (20%), Positives = 112/340 (33%), Gaps = 64/340 (19%)
Query 251 GLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKS-HFAIGLALYYPSARIVYTAC 309
G + + + D V N ++GPPG+GK+ H + SA +V
Sbjct 2497 GSHIAVPLQDTLKGVVVNKALKNAAASEYVEGPPGSGKTFHLVKDVLAVVGSATLVV--P 2554
Query 310 SHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTAD 369
+HA++ K + ++P ++ + S V T
Sbjct 2555 THASMLDCINKLKQAG--ADPYFVVPKYTVLDFP---RPGSGNITVRLPQVGTSEGETF- 2608
Query 370 IVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLM 429
DE++ + DL+ + + R K Y GD QL L +F S+
Sbjct 2609 ---VDEVAYFSPVDLARILTQGRVKGY---GDLNQLGCVGPASVPRNLWLRHFVSLEP-- 2660
Query 430 KTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAIN 489
L C R A + D + +Y + + + K+ +
Sbjct 2661 --------LRVCHRFGAAVCDLI-KGIY-----PYYEPAPHTTKVVF------------- 2693
Query 490 RPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQT 549
NP + K V I+ Y+ GL +T+DS QG + V T
Sbjct 2694 -----------VPNPDFEKGVVITAYHKDR-------GLGHRTIDSIQGCTFPVV--TLR 2733
Query 550 TETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTS 589
T S R VA+TRA + L L+FT
Sbjct 2734 LPTPQSLTRPRAVVAVTRASQELYIYDPFDQLSGLLKFTK 2773
>sp|P69514|RDRP_CGMVS Replicase large subunit OS=Cucumber green
mottle mosaic virus (strain watermelon SH) OX=12236 PE=3 SV=1
Length=1648
Score = 56.2 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 48/301 (16%), Positives = 93/301 (31%), Gaps = 52/301 (17%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
+ + G PG GK+ I + + A + +A +
Sbjct 858 ITLVDGVPGCGKTAEIIARVNWKTD---LVLTPGREAAAMIRRRACALHKSPVAT----- 909
Query 337 RARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHY 396
V FD F +N + D V DE M L+ K
Sbjct 910 NDNVRTFDSFVMNRKI-------------FKFDAVYVDEGLMVHTGLLNFALKISGCKKA 956
Query 397 VYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALV 456
GD Q+P ++ +Y + L+ ++ RCP ++ ++ +
Sbjct 957 FVFGDAKQIPFINRVMN-----FDYPKELRTLIVDNVERRYVT--HRCPRDVTSFLNTI- 1008
Query 457 YDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVR-EFLTRNPAWRKAVFISPY 515
+K A + + + I RP++ ++ + +T + ++++ S Y
Sbjct 1009 -------YKAAVATTSPVVHSVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIKSGY 1061
Query 516 NSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVN---RFNVAITRAKVGI 572
N TV QG ++ + T T VA+TR +
Sbjct 1062 N------------DVNTVHEIQGETFEETAVVRATPTPIGLIARDSPHVLVALTRHTKAM 1109
Query 573 L 573
+
Sbjct 1110 V 1110
>sp|Q306W6|POLN_EEEV1 Polyprotein P1234 OS=Eastern equine encephalitis
virus (strain PE-0.0155) OX=374596 PE=1 SV=3
Length=2471
Score = 56.2 bits (134), Expect = 9e-07, Method: Composition-based stats.
Identities = 56/294 (19%), Positives = 96/294 (33%), Gaps = 56/294 (19%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS G+ + R + + + C+ II R
Sbjct 717 VYGVPGSGKS----GIIKSAVTKRDLVVSA----------------KKENCTEIIKDVKR 756
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI 399
+ D T++ + N + + D + DE L + A ++ K V
Sbjct 757 MRGMDV--AARTVDSVLL---NGV-KHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLC 810
Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN 459
GDP Q + K + RRC + VS L YD
Sbjct 811 GDPKQCGFFNMMCLKVHFN----------HEICTEVYHKSISRRCTRTVTAIVSTLFYDK 860
Query 460 KLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519
+++ S + D +S + LT W K + I N +
Sbjct 861 RMRTVNPCSDKII---------IDTTST---TKPLKDDIILTCFRGWVKQLQIDYKNHEI 908
Query 520 AVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGIL 573
A+ GL + V + + + ++ QT+E NV +TR + I+
Sbjct 909 MTAAASQGLTRKGVYAVRYKVNENPLYAQTSE--------HVNVLLTRTEKRIV 954
>sp|Q9J942|RDRP_TRVPP Replicase large subunit OS=Tobacco rattle
virus (isolate PpK20) OX=652939 PE=3 SV=2
Length=1707
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 59/301 (20%), Positives = 102/301 (34%), Gaps = 50/301 (17%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
+ + G PG GKS + P +V + AA D L E+ S+ P
Sbjct 899 FELVDGVPGCGKSTMIVN--SANPCVDVVL-STGRAATDDLIERF--------ASKGFPC 947
Query 337 RA--RVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK 394
+ RV+ D F + C +L T D++ FDE MA + AK
Sbjct 948 KLKRRVKTVDSF--------LMHCVDGSL---TGDVLHFDEALMAHAGMVYFCAQIAGAK 996
Query 395 HYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSA 454
+ GD Q+ + + F+S+ + R PA++ ++
Sbjct 997 RCICQGDQNQISFK----PRVSQVDLRFSSLVGKFDIVTEKR---ETYRSPADVAAVLNK 1049
Query 455 LVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
Y ++ H + V ++ FL + +K +
Sbjct 1050 -YYTGDVRTHNATANSM------TVRKIVSKEQVSLKPGAQYITFL---QSEKKELV--- 1096
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR--FNVAITRAKVGI 572
N +A + + TV SQG + V+ +T T S R VA++R +
Sbjct 1097 ----NLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGREYLIVALSRHTQSL 1152
Query 573 L 573
+
Sbjct 1153 V 1153
>sp|P05080|194K_TRVSY Replicase large subunit OS=Tobacco rattle
virus (strain SYM) OX=12298 PE=3 SV=2
Length=1707
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 59/301 (20%), Positives = 102/301 (34%), Gaps = 50/301 (17%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
+ + G PG GKS + P +V + AA D L E+ S+ P
Sbjct 899 FELVDGVPGCGKSTMIVN--SANPCVDVVL-STGRAATDDLIERF--------ASKGFPC 947
Query 337 RA--RVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK 394
+ RV+ D F + C +L T D++ FDE MA + AK
Sbjct 948 KLKRRVKTVDSF--------LMHCVDGSL---TGDVLHFDEALMAHAGMVYFCAQIAGAK 996
Query 395 HYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSA 454
+ GD Q+ + + F+S+ + R PA++ ++
Sbjct 997 RCICQGDQNQISFK----PRVSQVDLRFSSLVGKFDIVTEKR---ETYRSPADVAAVLNK 1049
Query 455 LVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
Y ++ H + V ++ FL + +K +
Sbjct 1050 -YYTGDVRTHNATANSM------TVRKIVSKEQVSLKPGAQYITFL---QSEKKELV--- 1096
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR--FNVAITRAKVGI 572
N +A + + TV SQG + V+ +T T S R VA++R +
Sbjct 1097 ----NLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGREYLIVALSRHTQSL 1152
Query 573 L 573
+
Sbjct 1153 V 1153
>sp|Q9YRB3|RDRP_NCBVS Methyltransferase/helicase/RNA-directed
RNA polymerase OS=Nudaurelia capensis beta virus (isolate Pine
emperor moth/South Africa) OX=652108 PE=3 SV=1
Length=1925
Score = 54.3 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 57/171 (33%), Gaps = 29/171 (17%)
Query 282 GPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVE 341
GPPG+GKS A ++Y A + DAL E S + P+ RV
Sbjct 566 GPPGSGKSRAAKPRFADLQGG-VLYCAPTRTLRDALDE-----------SVVHPS--RVC 611
Query 342 CFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD 401
T + D++V DE + ++ + V +GD
Sbjct 612 ---------TYHNALHVAAKESGNRPFDVIVIDEAETTPACYVGTMHHASPSSRIVCLGD 662
Query 402 PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTV 452
P Q+ K L+P ++ T RCP ++++
Sbjct 663 PHQIGYIDFSDRKDDLKP------FSIIAAECRTRRFNTTYRCPQDVLNLP 707
>sp|Q67724|RDRP_HASV Methyltransferase/helicase/RNA-directed RNA
polymerase OS=Helicoverpa armigera stunt virus OX=37206 PE=2
SV=1
Length=1704
Score = 53.5 bits (127), Expect = 5e-06, Method: Composition-based stats.
Identities = 56/301 (19%), Positives = 96/301 (32%), Gaps = 69/301 (23%)
Query 273 GMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSR 332
G++ Y +GPPG+GK+ I AL + +Y A + +A+ + K +
Sbjct 603 GLEMY---EGPPGSGKTGTLIA-ALEAAGGKALYVAPTRELREAMDRRI-KPPSASRTQH 657
Query 333 IIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLR 392
+ A R T P VV DE M +++V+A
Sbjct 658 VALAILRR-----------------ATAEGAP---FATVVIDECFMFPLVYVAIVHALSP 697
Query 393 AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPD---MFLGTCRRCPAEIV 449
+ V +GD Q+ G ++ + ++ L++ + +RCPA++V
Sbjct 698 SSRIVLVGDVHQI---------GFIDFQGTSANMPLVRDVVKQCRRRTFNQTKRCPADVV 748
Query 450 DTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKA 509
T L ++ C I+H N + L +
Sbjct 749 ATTFFQ----SLYPGCTTTSGCV-----ASISHVAPDYRNSQ-----AQTLCFTQEEKS- 793
Query 510 VFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAH---SCNVNRFNVAIT 566
+ TV +QG + VI TA + V IT
Sbjct 794 --------------RHGAEGAMTVHEAQGRTFASVILHYNGSTAEQKLLAEKSHLLVGIT 839
Query 567 R 567
R
Sbjct 840 R 840
>sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhagic
fever virus OX=38143 GN=rep PE=2 SV=4
Length=3595
Score = 53.9 bits (128), Expect = 5e-06, Method: Composition-based stats.
Identities = 57/296 (19%), Positives = 90/296 (30%), Gaps = 69/296 (23%)
Query 279 TLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARA 338
+ GPPG+GK+ F L +VY +H ++ + +P
Sbjct 2894 FVVGPPGSGKTTFISNLL---DDDAVVYC-PTHVSL------IAYSKSLPAARFSVPRGQ 2943
Query 339 RVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVY 398
+ ++ Q + +P DE A +D+ + L
Sbjct 2944 DPAEYGTPALSGPTLQ--LLSAGYVPGAKH---YLDEACYANPFDVFKL---LSKTPITA 2995
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
IGDPAQL + + V LMK L R I +
Sbjct 2996 IGDPAQLTP---------VGFDTPLYVFELMKKNA----LHAIYRFGQNICNA------- 3035
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
+ +++ V P + ++PY+
Sbjct 3036 ------------IQPCYSTKLVSQRQGDT-------EVIFQTKFAPRGK---VLTPYHRD 3073
Query 519 NAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILC 574
A+ T+DSSQGS YD V T T S + R V ITRA+ +
Sbjct 3074 RVGAA-------VTIDSSQGSTYDVV--TLYLPTKGSLTLARGLVGITRARERLYV 3120
>sp|Q9WJC7|POLN_EEVVM Polyprotein P1234 OS=Venezuelan equine encephalitis
virus (strain Mena II) OX=36384 PE=3 SV=3
Length=2499
Score = 53.5 bits (127), Expect = 6e-06, Method: Composition-based stats.
Identities = 52/297 (18%), Positives = 88/297 (30%), Gaps = 62/297 (21%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS G+ + + + + + C+ II
Sbjct 719 VYGVPGSGKS----GIIKSAVTKKDLVVSA----------------KKENCAEIIRD--- 755
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI 399
V+ VN+ V + + + DE L + A +R K V
Sbjct 756 VKKMKGLDVNARTVDSVLLNG---CKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLC 812
Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN 459
GDP Q + K + RRC + VS L YD
Sbjct 813 GDPKQCGFFNMMCLKVHFN----------HEICTQVFHKSISRRCTKSVTSVVSTLFYDK 862
Query 460 KLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519
+++ + ++ S ++ + LT W K + I Y
Sbjct 863 RMRTTNPRDSKIEID--------TTGSTKSKKE----DLILTCFRGWVKQLQID-YK--- 906
Query 520 AVASKILGLPTQTVDSSQGSEYDYVI---FTQTTETAHSCNVNRFNVAITRAKVGIL 573
G T +SQG V + ++ NV +TR + I+
Sbjct 907 -------GNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKIV 956
>sp|P13896|POLN_WEEV Polyprotein P1234 OS=Western equine encephalitis
virus OX=11039 PE=3 SV=3
Length=2467
Score = 52.8 bits (125), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/209 (19%), Positives = 68/209 (33%), Gaps = 30/209 (14%)
Query 365 ETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS 424
+ + + DE L + A ++ K V GDP Q + K +
Sbjct 776 KHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDICTE 835
Query 425 VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDV 484
V RRC + VS L YD ++K + + +
Sbjct 836 VYHK----------SISRRCTQTVTAIVSTLFYDKRMKTVNPCADKI------------I 873
Query 485 SSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYV 544
+ LT W K + I N + A+ GL + V + + +
Sbjct 874 IDTTGTTKPHKDDLILTCFRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENP 933
Query 545 IFTQTTETAHSCNVNRFNVAITRAKVGIL 573
+++QT+E NV +TR + I+
Sbjct 934 LYSQTSE--------HVNVLLTRTEKRIV 954
>sp|P27282|POLN_EEVVT Polyprotein P1234 OS=Venezuelan equine encephalitis
virus (strain Trinidad donkey) OX=11038 PE=1 SV=3
Length=2493
Score = 52.4 bits (124), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/297 (18%), Positives = 85/297 (29%), Gaps = 62/297 (21%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS G+ + + + + + C+ II
Sbjct 719 VYGVPGSGKS----GIIKSAVTKKDLVVSA----------------KKENCAEIIRD--- 755
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI 399
V+ VN+ V + + + DE L + A +R K V
Sbjct 756 VKKMKGLDVNARTVDSVLLNG---CKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLC 812
Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN 459
GDP Q + K + RRC + VS L YD
Sbjct 813 GDPKQCGFFNMMCLKVHFN----------HEICTQVFHKSISRRCTKSVTSVVSTLFYDK 862
Query 460 KLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519
K++ K + V + LT W K + I Y
Sbjct 863 KMRTTNPKETKI------------VIDTTGSTKPKQDDLILTCFRGWVKQLQID-YK--- 906
Query 520 AVASKILGLPTQTVDSSQGSEYD---YVIFTQTTETAHSCNVNRFNVAITRAKVGIL 573
G T +SQG V + ++ NV +TR + I+
Sbjct 907 -------GNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRIV 956
>sp|P36327|POLN_EEVV3 Polyprotein P1234 OS=Venezuelan equine encephalitis
virus (strain 3880) OX=36382 PE=3 SV=3
Length=2485
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 55/297 (19%), Positives = 91/297 (31%), Gaps = 62/297 (21%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS G+ + + + + + C+ II R
Sbjct 719 VYGVPGSGKS----GIIKSAVTKKDLVVSA----------------KKENCAEIIRDVKR 758
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI 399
++ D VN+ V + + + DE L + A +R K V
Sbjct 759 IKGLD---VNARTVDSVLLNG---CKYPVETLYIDEAFACHAGTLRALIAIIRPKKAVLC 812
Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN 459
GDP Q + K + RRC + VS L YD
Sbjct 813 GDPKQCGFFNMMCLKVHFN----------HEICTQVFHKSISRRCTKSVTSVVSTLFYDK 862
Query 460 KLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519
+++ K + D + + Q ++ LT W K + I Y
Sbjct 863 RMRTTNPKETKI---------EIDTTGSTKPKQDDLI---LTCFRGWVKQLQID-YK--- 906
Query 520 AVASKILGLPTQTVDSSQGSEYD---YVIFTQTTETAHSCNVNRFNVAITRAKVGIL 573
G T +SQG V + ++ NV +TR + I+
Sbjct 907 -------GNEVMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRIV 956
>sp|Q5UQ92|YR530_MIMIV Uncharacterized protein R530 OS=Acanthamoeba
polyphaga mimivirus OX=212035 GN=MIMI_R530 PE=4 SV=1
Length=494
Score = 51.6 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/220 (19%), Positives = 85/220 (39%), Gaps = 26/220 (12%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIV----YTACSHAAVDALCEKALKYLPIDKCS 331
K L G G+GK++ + + ++ Y A +H A+ L ++ I+
Sbjct 23 KIFYLIGFAGSGKTYTISKITKKFLVDELIENIYYCAPTHKALKVL--ESYIKSNINASD 80
Query 332 RIIPARARV---ECFDKFKV---NSTLEQYVFCTVNA--LPETTADIVVFDEISMATNYD 383
+ + + + +FK T + T + L + ++VV DE SM +
Sbjct 81 KDLSNKIKFMTIHKLLEFKPIIQTETGSKVFKSTKESKFLKNISKNLVVIDECSMISQEM 140
Query 384 LSVVNARLR--AKHYVYIGDPAQLPA----PRTLLTKGTLEPEYFNSVCRLMKTIGPDMF 437
+ +N + +Y+GDP QLP + + +Y + +M+T D+
Sbjct 141 VDELNKYINLYPIKIIYMGDPKQLPPVGEVESLIFSTIPNNYQYHIVLDEIMRTNSVDIK 200
Query 438 LGTCRRCPAEIVDTVSALVYDNKLKAH-KDKSAQCFKMFY 476
C + I + + KL + + + F+M++
Sbjct 201 -AVC----SVIRNWNLNDQINQKLIDVFNNSTTRRFRMYH 235
>sp|P36328|POLN_EEVVP Polyprotein P1234 OS=Venezuelan equine encephalitis
virus (strain P676) OX=36385 PE=1 SV=2
Length=2493
Score = 51.6 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/297 (18%), Positives = 85/297 (29%), Gaps = 62/297 (21%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS G+ + + + + + C+ II
Sbjct 719 VYGVPGSGKS----GIIKSAVTKKDLVVSA----------------KKENCAEIIRD--- 755
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI 399
V+ VN+ V + + + DE L + A +R K V
Sbjct 756 VKKMKGLDVNARTVDSVLLNG---CKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLC 812
Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN 459
GDP Q + K + RRC + VS L YD
Sbjct 813 GDPKQCGFFNMMCLKVHFN----------HEICTQVFHKSISRRCTKSVTSVVSTLFYDK 862
Query 460 KLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519
+++ K + V + LT W K + I Y
Sbjct 863 RMRTTNPKETKI------------VIDTTGSTKPKQDDLILTCFRGWVKQLQID-YK--- 906
Query 520 AVASKILGLPTQTVDSSQGSEYD---YVIFTQTTETAHSCNVNRFNVAITRAKVGIL 573
G T +SQG V + ++ NV +TR + I+
Sbjct 907 -------GNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRIV 956
>sp|Q9QBU0|RDRP_PMTVS Replicase large subunit OS=Potato mop-top
virus (isolate Potato/Sweden/Sw) OX=652839 GN=rep PE=3 SV=3
Length=1812
Score = 51.6 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/311 (18%), Positives = 104/311 (33%), Gaps = 62/311 (20%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + + G PG GKS + + A + V T AA D + K +++
Sbjct 1008 RITLVDGVPGCGKSTYVVKEANL--VNQYVVTIGREAAED--LRERFKSERNATATQLK- 1062
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKH 395
RV D + +N T ++ A+++ FDE MA + L A+
Sbjct 1063 ---RVRTVDSYLLNDT-------------QSRANVLHFDEALMAHAGMVYFCADDLSARS 1106
Query 396 YVYIGDPAQLP--APRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVS 453
+ GD Q+P +T + E N V + + R P ++ ++
Sbjct 1107 VICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLT-----------YRSPLDVASYLT 1155
Query 454 ALVYDNK--LKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVF 511
+ + + + + +T S + + P + F
Sbjct 1156 KKNFYGTSVVTSANPLVRSLKTVGPRDGMTSIYS--------------IPKIPGTQYLTF 1201
Query 512 ISPYNSQNAVASKILG---LPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFN------ 562
+ S+ + LG TV SQG YD V+ + T + N
Sbjct 1202 L---QSEKEEMRQYLGRGNWNVNTVHESQGKTYDNVVLCRLKATDNEIYPGGRNSSPYMV 1258
Query 563 VAITRAKVGIL 573
V +TR + ++
Sbjct 1259 VGVTRHRRSLV 1269
>sp|Q8V294|POLN_EEVVC Polyprotein P1234 OS=Venezuelan equine encephalitis
virus (strain CPA201) OX=376610 PE=3 SV=3
Length=2497
Score = 51.6 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/297 (17%), Positives = 85/297 (29%), Gaps = 62/297 (21%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS G+ + + + + + C+ II
Sbjct 719 VYGVPGSGKS----GIIKSAVTKKDLVVSA----------------KKENCAEIIRD--- 755
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI 399
V+ VN+ V + + + DE L + A +R K V
Sbjct 756 VKKMKGLDVNARTVDSVLLNG---CKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLC 812
Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN 459
GDP Q + K + RRC + VS L YD
Sbjct 813 GDPKQCGFFNMMCLKVHFN----------HEICTQVFHKSISRRCTKSVTSVVSTLFYDK 862
Query 460 KLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519
+++ + ++ + LT W K + I Y
Sbjct 863 RMRTTNPRDSKI------------EIDTTGSTKPKKDDLILTCFRGWVKQLQID-YK--- 906
Query 520 AVASKILGLPTQTVDSSQGSEYD---YVIFTQTTETAHSCNVNRFNVAITRAKVGIL 573
G T +SQG V + ++ NV +TR + I+
Sbjct 907 -------GNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKIV 956
>sp|P20127|POLR_OYMV RNA replicase polyprotein OS=Ononis yellow
mosaic virus OX=12153 PE=3 SV=1
Length=1776
Score = 51.6 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/300 (19%), Positives = 91/300 (30%), Gaps = 69/300 (23%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG GKSH L L A ++ + + R
Sbjct 897 IAGFPGCGKSHPIQKL---------------------LQTPAFRHFRLSVPT----NELR 931
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNAR-LRAKHYVY 398
E + E + CT +++I+V DEI L ++ + +
Sbjct 932 SEWKRDLNLPE-SEVWRLCTWETALFKSSNILVVDEIYKLPRGYLDLILLADPSIQLVIM 990
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
+GDP Q + + RL K I D + RCP + D ++
Sbjct 991 LGDPLQ--GEYHSSHPSSSNSRLESETTRLSKYI--DCYCWWTYRCPKAVADLFGVKTFN 1046
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAV-FISPYNS 517
+ G +R L+ P V I+ N+
Sbjct 1047 S--------------------------------NEGFIRAVLSHPPNLPNLVNSIATANT 1074
Query 518 QNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMS 577
++ L T+ SSQG Y + + VA+TR++ GI I S
Sbjct 1075 MQSLGHHAL-----TISSSQGMTYSDPVTVLLDRHSLLITPQTALVALTRSRSGIYFIGS 1129
>sp|P17595|ALPHA_BSMV Replication protein alpha-A OS=Barley stripe
mosaic virus OX=12327 PE=1 SV=1
Length=1139
Score = 50.5 bits (119), Expect = 4e-05, Method: Composition-based stats.
Identities = 56/298 (19%), Positives = 100/298 (34%), Gaps = 40/298 (13%)
Query 262 FSSNVANYQKVGMQ--KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCE 319
++ V Y V + ++ + G PG GKS + R V A D L E
Sbjct 816 YNKLVDVYALVADRPLRFELIDGVPGCGKSTMILN---SCDIRREVVVGEGRNATDDLRE 872
Query 320 KALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMA 379
+ + ++ + A RV D AD FDE
Sbjct 873 RFKRKKNLNSKT----ANHRVRTLD-----------SLLLAEGPCVPQADRFHFDEALKV 917
Query 380 TNYDLSVVNARLRAKHYVYIGDPAQLP--APRTLLTKGTLEPEYFNSVCRLMKTIGPDMF 437
+ +L A + GD AQLP + P+Y ++ I P +
Sbjct 918 HYGAIMFCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTI------INPKL- 970
Query 438 LGTCRRCPAEIVDTVSAL-VYDNKLKAHKDKSAQCFK--MFYKGVITHDVSSAINRPQIG 494
R P ++ +SA Y K K ++ K ++ +G T + ++ +
Sbjct 971 --RSYRIPGDVAFYLSAKEFYKVKGIPQKVITSNSVKRSLYARGETTPERFVSLLDVPVR 1028
Query 495 VVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTET 552
+LT A ++++ + + + T+ +QG Y+ VI + T
Sbjct 1029 KDTHYLTFLQAEKESLM------SHLIPKGVKKESISTIHEAQGGTYENVILVRLQRT 1080
>sp|Q86924|POLN_AURAV Polyprotein P1234 OS=Aura virus OX=44158
PE=3 SV=3
Length=2499
Score = 50.1 bits (118), Expect = 6e-05, Method: Composition-based stats.
Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 62/254 (24%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS + + + + T+ + K + +R + +
Sbjct 723 VIGTPGSGKS----AIIKSTVTLKDLVTSGKKENCKEIENDVQKMRGMTIATRTVDSVL- 777
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
+ +K D++ DE L + A ++ + V
Sbjct 778 ---LNGWK------------------KAVDVLYVDEAFACHAGTLMALIAIVKPRRKVVL 816
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q P + K FN+ R + T ++ RRC + VS L YD
Sbjct 817 CGDPKQWPFFNLMQLKV-----NFNNPERDLCTSTHYKYIS--RRCTQPVTAIVSTLHYD 869
Query 459 NKL------------------KAHK-DKSAQCFKMFYK-------GVITHDVSSAI--NR 490
K+ K K D CF+ + K G HD +++ R
Sbjct 870 GKMRTTNPCKRAIEIDVNGSTKPKKGDIVLTCFRGWVKQGQIDYPGPGGHDRAASQGLTR 929
Query 491 PQIGVVREFLTRNP 504
+ VR+ + NP
Sbjct 930 RGVYAVRQKVNENP 943
>sp|P27283|POLN_SINDO Polyprotein P1234 OS=Sindbis virus subtype
Ockelbo (strain Edsbyn 82-5) OX=31699 PE=3 SV=2
Length=2515
Score = 49.7 bits (117), Expect = 8e-05, Method: Composition-based stats.
Identities = 62/292 (21%), Positives = 93/292 (32%), Gaps = 60/292 (21%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS + +AR + T+ + C I R
Sbjct 724 VIGTPGSGKS----AIIKSTVTARDLVTS----------------GKKENCREIEADVLR 763
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVY 398
+ ++ S V +++ DE L + A +R K V
Sbjct 764 LR---GMQITSKTVDSVMLNG---CHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVL 817
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K FN R + T F+ RRC + VS L YD
Sbjct 818 CGDPKQCGFFNMMQLKVH-----FNHPERDICTKTFYKFIS--RRCTQPVTAIVSTLHYD 870
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
K+K K I D++ A +P+ G + LT W K + I
Sbjct 871 GKMKTTNP---------CKKNIEIDITGA-TKPKPGDII--LTCFRGWVKQLQI------ 912
Query 519 NAVASKILGLPTQTVDSSQGSEYDYVIFTQ---TTETAHSCNVNRFNVAITR 567
G T +SQG V + ++ NV +TR
Sbjct 913 -----DYPGHEVMTAAASQGLTRKGVYAVRQKVNENALYAITSEHVNVLLTR 959
>sp|Q08534|R1AB_BYVU Replicase polyprotein 1ab OS=Beet yellows
virus (isolate Ukraine) OX=478555 GN=1a-1b PE=1 SV=2
Length=3094
Score = 49.7 bits (117), Expect = 9e-05, Method: Composition-based stats.
Identities = 49/299 (16%), Positives = 96/299 (32%), Gaps = 44/299 (15%)
Query 283 PPGTGKSHFAIGLA--LYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARV 340
PPG GK+ I + + ++ TA + ++ + + K + +D+ + R R+
Sbjct 2250 PPGGGKTTTLIKVFCETFSKVNSLILTA-NKSSREEILAKVNRI-VLDEGDTPLQTRDRI 2307
Query 341 ECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG 400
D + +N+ ++ DE M + + G
Sbjct 2308 LTIDSYLMNNRGLT-------------CKVLYLDECFMVHAGAAVACIEFTKCDSAILFG 2354
Query 401 DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPD--MFLGTCRRCPAEIVDTVSALVYD 458
D Q + G + L + + + ++ RCP ++ +S Y
Sbjct 2355 DSRQ-------IRYGRCSELDTAVLSDLNRFVDDESRVYGEVSYRCPWDVCAWLST-FY- 2405
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREF--LTRNPAWRKAVFISPYN 516
K+ + G + V + + EF LT + +K + S
Sbjct 2406 -------PKTVATTNLVSAGQSSMQVREIESVDDVEYSSEFVYLTMLQSEKKDLLKSFGK 2458
Query 517 SQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTT---ETAHSCNVNRFNVAITRAKVGI 572
+ K L TV +QG Y V +T + N VA++R +
Sbjct 2459 RSRSSVEKPTVL---TVHEAQGETYRKVNLVRTKFQEDDPFRSE-NHITVALSRHVESL 2513
>sp|Q89AB2|RECD_BUCBP RecBCD enzyme subunit RecD OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=recD
PE=3 SV=1
Length=618
Score = 48.5 bits (114), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/162 (21%), Positives = 67/162 (41%), Gaps = 20/162 (12%)
Query 262 FSSNVANYQKVGM-----QKYSTLQGPPGTGKSH-----FAIGLALYYPSARIVYTACSH 311
F++N+ + QK+ + + + G PGTGK+ + + L+ I TA +
Sbjct 149 FNTNIDDTQKLAIILSIINNITFIIGGPGTGKTTIILKILLVLIRLHKKKINIKLTALTG 208
Query 312 AAVDALCEKAL---KYLPIDKCSRIIPARARVECFD--KFKVNSTLEQYVFCTVNALPET 366
A + L E K L + + + I + + K N + C N L
Sbjct 209 KAANRLSESIHENIKKLNLTEHEKNIFNQKTTTLHNLLDLKPNKSFNYS--CCKNKL--Y 264
Query 367 TADIVVFDEISMATNYDLSVVNARL-RAKHYVYIGDPAQLPA 407
++++ DE SM + + + + + +++GD QLP+
Sbjct 265 NLNLLIIDEASMIDITIMDKLISSIPKTTKIIFLGDYNQLPS 306
>sp|Q00020|1A_BBMV Replication protein 1a OS=Broad bean mottle
virus OX=12301 GN=ORF1a PE=3 SV=1
Length=966
Score = 48.5 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 55/305 (18%), Positives = 93/305 (30%), Gaps = 56/305 (18%)
Query 278 STLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAR 337
+ G G GK+ + I+ TA +A D R
Sbjct 686 VMVDGVAGCGKTTAI--KETFRFEKDIIVTANRKSAED---------------VRKAIFG 728
Query 338 ARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYV 397
+ KV T + + + LPE ++ DE + L V + +
Sbjct 729 DASDSEVALKVVRTADSAIM---HGLPECHR--LLVDEAGLLHYGQLLAVADLCKCSEVL 783
Query 398 YIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALV- 456
GD Q+ T +Y N + RCP ++V V L
Sbjct 784 AFGDTEQI---SFKSRDATFRMKYCNI------EYDKRDIVSKTFRCPQDVVSAVKILKR 834
Query 457 --------YDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRK 508
Y+ + S++ K K I +IN+ + + +LT A +
Sbjct 835 KCANRSSKYNGWV-----SSSKVEKSLSKSRIV-----SINQVSMEKHKFYLTMTEADKA 884
Query 509 AVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETA---HSCNVNRFNVAI 565
A + + + +TV +QG D+V+ + T VA+
Sbjct 885 A--LCSRAKDVGLDKTWVESNMETVHEAQGKAVDHVVLVRLKSTKCDLFKSEEYCL-VAL 941
Query 566 TRAKV 570
TR K
Sbjct 942 TRHKR 946
>sp|Q05983|RDRP_RBDVR Methyltransferase/helicase/RNA-directed
RNA polymerase OS=Raspberry bushy dwarf virus (isolate Malling
Jewel raspberry/R15) OX=652675 PE=3 SV=1
Length=1694
Score = 48.5 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 57/304 (19%), Positives = 98/304 (32%), Gaps = 58/304 (19%)
Query 279 TLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARA 338
+ G G GK+ + Y P I+ + A VD + K
Sbjct 856 LVDGVTGCGKTTEIVRR--YRPG--ILILSVCKANVDEIRRKLAAV-------------- 897
Query 339 RVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVY 398
K T++ Y+ + D + DE ++ L + +
Sbjct 898 ------DSKFIRTVDSYLLSPSVT---GSCDELFIDEYGLSHPGILLLAIHISGIRKVTL 948
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GD Q+P + P +NSV + ++ T RCP +I ++ +
Sbjct 949 FGDSEQIP----FCNRLADFPLKYNSVEDVGLNFDREIR-STTYRCPQDITLSLQKMY-- 1001
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
K K K S V S+I I E N ++I
Sbjct 1002 -KTKPIKTVST--------------VESSITIKPIKSEFEIPLPNAFDGPVLYICMTKHD 1046
Query 519 NAV-----ASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR----FNVAITRAK 569
++ A + + +TV ++QG Y V++ + T T + R VAI+R
Sbjct 1047 ESLLKLRWAKENISSEVRTVHAAQGLSYKNVVYFRLTRTDNDLYTKRKLPYHLVAISRHT 1106
Query 570 VGIL 573
I+
Sbjct 1107 DKIV 1110
>sp|Q83044|R1A_LIYV9 Replicase polyprotein 1a OS=Lettuce infectious
yellows virus (isolate United States/92) OX=651355 GN=ORF1a
PE=4 SV=1
Length=1873
Score = 48.5 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/297 (19%), Positives = 103/297 (35%), Gaps = 51/297 (17%)
Query 283 PPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVEC 342
PPG GK+ L ++ A S+ V L + + L D I V+
Sbjct 1574 PPGAGKTTTIAKLMSKDLKNKVKCLALSYTKVGRL--ELIDKLKKDG---IEKPEKYVKT 1628
Query 343 FDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDP 402
+D F +N+ + VN DE+ M + ++ ++ GD
Sbjct 1629 YDSFLMNNDN---ILEIVNLYC---------DEVFMMHAGHFLTLLTKIAYQNGYCYGDV 1676
Query 403 AQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLK 462
Q+P + + P Y + + + D + RCP + +S L
Sbjct 1677 NQIP----FINRDPYTPAYLSREFFRKQDLNYDTY---TYRCPLDTCYLLSNL------- 1722
Query 463 AHKDKSAQCFKMFYKGVITHDVS----SAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
KD+ ++ GV + ++N I VV E P A +++ +
Sbjct 1723 --KDEMGNI--IYAGGVKNVNEVYPTIRSLNLFGINVVGEV----PVEYNAKYLTFTQDE 1774
Query 519 NAVASKILGLP------TQTVDSSQGSEYDYVIFTQTT--ETAHSCNVNRFNVAITR 567
+ + TV+ +QG + V + + ++N+F VAI+R
Sbjct 1775 KLNLQRHIDSQGGCRNAVSTVNEAQGCTFSEVNLVRLVQFDNPVMSDINQFVVAISR 1831
>sp|Q83045|R1AB_LIYV9 Replicase polyprotein 1ab OS=Lettuce infectious
yellows virus (isolate United States/92) OX=651355 PE=3
SV=2
Length=2379
Score = 48.5 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/297 (19%), Positives = 103/297 (35%), Gaps = 51/297 (17%)
Query 283 PPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVEC 342
PPG GK+ L ++ A S+ V L + + L D I V+
Sbjct 1574 PPGAGKTTTIAKLMSKDLKNKVKCLALSYTKVGRL--ELIDKLKKDG---IEKPEKYVKT 1628
Query 343 FDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDP 402
+D F +N+ + VN DE+ M + ++ ++ GD
Sbjct 1629 YDSFLMNNDN---ILEIVNLYC---------DEVFMMHAGHFLTLLTKIAYQNGYCYGDV 1676
Query 403 AQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLK 462
Q+P + + P Y + + + D + RCP + +S L
Sbjct 1677 NQIP----FINRDPYTPAYLSREFFRKQDLNYDTY---TYRCPLDTCYLLSNL------- 1722
Query 463 AHKDKSAQCFKMFYKGVITHDVS----SAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
KD+ ++ GV + ++N I VV E P A +++ +
Sbjct 1723 --KDEMGNI--IYAGGVKNVNEVYPTIRSLNLFGINVVGEV----PVEYNAKYLTFTQDE 1774
Query 519 NAVASKILGLP------TQTVDSSQGSEYDYVIFTQTT--ETAHSCNVNRFNVAITR 567
+ + TV+ +QG + V + + ++N+F VAI+R
Sbjct 1775 KLNLQRHIDSQGGCRNAVSTVNEAQGCTFSEVNLVRLVQFDNPVMSDINQFVVAISR 1831
>sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian
hepatitis E virus (isolate Chicken/California/Meng) OX=516993
GN=ORF1 PE=3 SV=1
Length=1531
Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/260 (20%), Positives = 80/260 (31%), Gaps = 55/260 (21%)
Query 253 YPTLNISDEFSSNVANYQKVGMQ-KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSH 311
Y + ++ V + M KY+ + G PG+GKS
Sbjct 788 YGLATEPEPYNELVKGVEVAPMTVKYALIAGVPGSGKS---------------------- 825
Query 312 AAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIV 371
++VD I P + ++ +A PE V
Sbjct 826 SSVD-----------HRGAVVITPTKTLAR---EWSARGATAVTPHVAASAAPEGR---V 868
Query 372 VFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPR------TLLTKGTLEPEYFNSV 425
+ DE + L V + R RA+ V +GDP Q+PA T L+P + +V
Sbjct 869 IVDEAYAIPPH-LLVASLR-RARDVVMLGDPHQIPALDFDGRCLTSAVDLGLQPTSWRTV 926
Query 426 CRLMKTIGPDMFLGTCRRCPAEIVDTVSAL---VYDNKLKAHKDKSAQCFKMFYKGVITH 482
+FL T I T L V+ + K Q K G IT
Sbjct 927 SHR-CPWDVCIFLRTDY---PTITTTSRVLRSVVFTGETIGQKIVFTQVAKQSNPGSITV 982
Query 483 DVSSAINRPQIGVVREFLTR 502
+ Q ++ R
Sbjct 983 HEAQGSTFDQTTIIATLDAR 1002
>sp|P32270|DDA_BPT4 ATP-dependent DNA helicase dda OS=Enterobacteria
phage T4 OX=10665 GN=dda PE=1 SV=2
Length=439
Score = 47.0 bits (110), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/153 (23%), Positives = 57/153 (37%), Gaps = 22/153 (14%)
Query 274 MQKYSTLQGPPGTGKSH---FAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKC 330
+ + T+ GP GTGK+ F I + I+ A +HAA +K L L +
Sbjct 24 KKHHVTINGPAGTGKTTLTKFIIEALISTGGTGIILAAPTHAA-----KKILSKLSGKEA 78
Query 331 SRIIPARARVECFDKFKVNS-TLEQYVFCTVNALPETTAD-IVVFDEISMATNYDLSVVN 388
S I K+N T E+ V +P+ +++ DE+SM + L +
Sbjct 79 STI---------HSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSM-YDRKLFKIL 128
Query 389 ARLRAKHY--VYIGDPAQLPAPRTLLTKGTLEP 419
+ IGD Q+ + P
Sbjct 129 LSTIPPWCTIIGIGDNKQIRPVEPGENTAYISP 161
>sp|Q84133|RDRP_ORSVS Replicase large subunit OS=Odontoglossum
ringspot virus (isolate Singapore 1) OX=138662 PE=3 SV=2
Length=1612
Score = 47.4 bits (111), Expect = 4e-04, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 99/301 (33%), Gaps = 45/301 (15%)
Query 274 MQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRI 333
M K + + G PG GK+ + + + A + ++A +K +
Sbjct 818 MPKVTLVDGVPGCGKTKEILETVNFDED---LILVPGKEACKMIIKRA------NKSGHV 868
Query 334 IPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRA 393
R V D F ++ + Y + + DE M ++ + A
Sbjct 869 RATRDNVRTVDSFLMHLKPKTY-------------NKLFIDEGLMLHTGCVNFLVALSHC 915
Query 394 KHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVS 453
+ + GD Q+P + P++F C + + L RCPA++ ++
Sbjct 916 REAMVFGDAEQIPFINRVANFPY--PKHFRYTCLYHREV---RRLSL--RCPADVTHFMN 968
Query 454 ALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFIS 513
+ YD K+ D +G + S +P G + F + A K
Sbjct 969 SK-YDGKVLCTNDVIRSVDAEVVRGKGVFNPKS---KPLKGKIITFTQSDKAELK----- 1019
Query 514 PYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAH---SCNVNRFNVAITRAKV 570
+ G TV QG ++ V + T T S + VA+TR
Sbjct 1020 ---ERGYEEVSTFG-EINTVHEIQGETFEDVSVVRLTPTPLELISKSSPHVLVALTRHTK 1075
Query 571 G 571
Sbjct 1076 S 1076
>sp|Q89249|RDRP_SBWMN Replicase large subunit OS=Soil-borne wheat
mosaic virus (strain United States/Nebraska/1981) OX=652673
GN=rep PE=3 SV=1
Length=1828
Score = 47.4 bits (111), Expect = 4e-04, Method: Composition-based stats.
Identities = 61/343 (18%), Positives = 108/343 (31%), Gaps = 57/343 (17%)
Query 245 HYVRITGLYPTLNISDEFSSN---VANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS 301
Y+ ++ L +N + + V ++ + + G PG GKS + L P
Sbjct 987 QYLLLSDLSFMMNELVIYRNLQQVVKKKERTKQARITLRDGVPGCGKSTWI--LNNANPM 1044
Query 302 ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVN 361
+V A + L EK +K K T++ ++ +
Sbjct 1045 KDMVLCV-GKEATEDLKEKFMKKHK--------------CAESDLKRIRTVDSFLMHDYD 1089
Query 362 ALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEY 421
A V FDE MA + L AK + GD Q+P + ++ +Y
Sbjct 1090 KF---RAATVHFDEALMAHAGIVYFCADILGAKKVICQGDSQQIP---FINRVESITLQY 1143
Query 422 FNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSAL-VYDNKLKAHKDKSAQCFKMFYKGVI 480
I ++ R P ++ ++ Y K+ + K+
Sbjct 1144 AKL------AIDETEYVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNSVLRSMKVVGPRDA 1197
Query 481 THDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILG----LPTQTVDSS 536
S P R A +++ S+ A K L + TV +
Sbjct 1198 KPMTSVHC--------------VPYHRDAQYLTFTQSEKADLYKALRAKGPVEVNTVHET 1243
Query 537 QGSEYDYVIFTQTTETAHSCNVN------RFNVAITRAKVGIL 573
QG +D VI + T + VA TR + ++
Sbjct 1244 QGKTFDDVIVVRLKTTENEIYPGGRKGQPYEIVATTRHRRSLV 1286
>sp|O71188|R1A_GLRV3 Replicase protein 1a OS=Grapevine leafroll-associated
virus 3 (isolate United States/NY1) OX=651354 GN=1a
PE=3 SV=2
Length=2233
Score = 47.4 bits (111), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/313 (15%), Positives = 106/313 (34%), Gaps = 37/313 (12%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+Y PPG GK+ + + P++ TA ++ D + ++ +
Sbjct 1930 EYKCYNAPPGGGKTTTLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATT 1989
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKH 395
+RV VN + V+ DE+ M L + A
Sbjct 1990 VNSRV-------------------VNFIVRGMYKRVLVDEVHMMHQGLLQLGVFATGASE 2030
Query 396 YVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSAL 455
++ GD Q+P + + + +++ ++ RCP ++ +S++
Sbjct 2031 GLFFGDINQIP----FINREKVFRMDCAVFVPKKESV---VYTSKSYRCPLDVCYLLSSM 2083
Query 456 VYDNKLKAHKDKSAQ-CFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
K + +K K + + + + + +I +L +
Sbjct 2084 TVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN-ADVYLCMTQLEKS------ 2136
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEY-DYVIF-TQTTETAHSCNVNRFNVAITRAKVGI 572
+ + ++ K P TV +QG + D V+F T+ + + V ++R +
Sbjct 2137 -DMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSL 2195
Query 573 LCIMSDRDLYDKL 585
+ L DK+
Sbjct 2196 VYAALSSKLDDKV 2208
>sp|O71189|R1AB_GLRV3 Replicase polyprotein 1ab OS=Grapevine leafroll-associated
virus 3 (isolate United States/NY1) OX=651354
GN=1a-1b PE=3 SV=3
Length=2772
Score = 47.4 bits (111), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/313 (15%), Positives = 106/313 (34%), Gaps = 37/313 (12%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+Y PPG GK+ + + P++ TA ++ D + ++ +
Sbjct 1930 EYKCYNAPPGGGKTTTLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATT 1989
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKH 395
+RV VN + V+ DE+ M L + A
Sbjct 1990 VNSRV-------------------VNFIVRGMYKRVLVDEVHMMHQGLLQLGVFATGASE 2030
Query 396 YVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSAL 455
++ GD Q+P + + + +++ ++ RCP ++ +S++
Sbjct 2031 GLFFGDINQIP----FINREKVFRMDCAVFVPKKESV---VYTSKSYRCPLDVCYLLSSM 2083
Query 456 VYDNKLKAHKDKSAQ-CFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
K + +K K + + + + + +I +L +
Sbjct 2084 TVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN-ADVYLCMTQLEKS------ 2136
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEY-DYVIF-TQTTETAHSCNVNRFNVAITRAKVGI 572
+ + ++ K P TV +QG + D V+F T+ + + V ++R +
Sbjct 2137 -DMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSL 2195
Query 573 LCIMSDRDLYDKL 585
+ L DK+
Sbjct 2196 VYAALSSKLDDKV 2208
>sp|P03317|POLN_SINDV Polyprotein P1234 OS=Sindbis virus OX=11034
PE=1 SV=2
Length=2513
Score = 47.4 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 60/292 (21%), Positives = 93/292 (32%), Gaps = 60/292 (21%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS + +AR + T+ + C I R
Sbjct 724 VIGTPGSGKS----AIIKSTVTARDLVTS----------------GKKENCREIEADVLR 763
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVY 398
+ ++ S V +++ DE L + A +R K V
Sbjct 764 LR---GMQITSKTVDSVMLNG---CHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVL 817
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K FN + + T ++ RRC + VS L YD
Sbjct 818 CGDPMQCGFFNMMQLKVH-----FNHPEKDICTKTFYKYIS--RRCTQPVTAIVSTLHYD 870
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
K+K K I D++ A +P+ G + LT W K + I
Sbjct 871 GKMKTTNP---------CKKNIEIDITGA-TKPKPGDII--LTCFRGWVKQLQI------ 912
Query 519 NAVASKILGLPTQTVDSSQGSEYDYVIFTQ---TTETAHSCNVNRFNVAITR 567
G T +SQG V + ++ NV +TR
Sbjct 913 -----DYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTR 959
>sp|Q58914|Y1519_METJA Uncharacterized protein MJ1519 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1
/ JCM 10045 / NBRC 100440) OX=243232 GN=MJ1519 PE=4 SV=1
Length=1175
Score = 46.6 bits (109), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 61/192 (32%), Gaps = 18/192 (9%)
Query 274 MQKYSTLQGPPGTGKSHFAIGLALYYPS----ARIVYTACSHAAVDALCEKALKYLPIDK 329
+ L GP GTGK+ + +I + + + EK
Sbjct 578 KNRVGILTGPAGTGKTTVIKTIMELMKEVLGLNKIYILTPTGKSAMVVNEKLNNLATAKT 637
Query 330 CSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNA 389
R I F + + + D ++ DE SM + +
Sbjct 638 IHRYIAEE-----FKDYFEGDNYFILRLDKITGNDKKEIDALIIDESSMVDIETMGRLLG 692
Query 390 RLR---AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPA 446
++ K+ +++GD QLP + G + +N + ++ L R +
Sbjct 693 TIKLDNLKYLIFVGDINQLPP----VGAGKPFYDIYNYLEKVNPQSICK--LEIVLRADS 746
Query 447 EIVDTVSALVYD 458
+ + +S L D
Sbjct 747 KKIVELSKLFLD 758
>sp|P89659|RDRP_ORSVC Replicase large subunit OS=Odontoglossum
ringspot virus (isolate Korean Cy) OX=138661 PE=3 SV=2
Length=1612
Score = 46.6 bits (109), Expect = 8e-04, Method: Composition-based stats.
Identities = 52/299 (17%), Positives = 99/299 (33%), Gaps = 45/299 (15%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
K + + G PG GK+ + + + A + ++A +K +
Sbjct 820 KVTLVDGVPGCGKTKEILETVNFDED---LILVPGKEACKMIIKRA------NKSGHVRA 870
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKH 395
+ V D F ++ + Y + + DE M ++ + A +
Sbjct 871 TKDNVRTVDSFLMHLKPKTY-------------NKLFIDEGLMLHTGCVNFLIALSHCRE 917
Query 396 YVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSAL 455
+ GD Q+P + P++F ++ + + L RCPA++ +++
Sbjct 918 AMVFGDTEQIPFINRVANFPY--PKHFATLVYDHREV---RRLSL--RCPADVTHFMNSK 970
Query 456 VYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPY 515
YD K+ D +G + S +P G + F + A K
Sbjct 971 -YDGKVLCTNDVIRSVDAEVVRGKGVFNPKS---KPLKGKIITFTQSDKAELK------- 1019
Query 516 NSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAH---SCNVNRFNVAITRAKVG 571
+ G TV QG ++ V + T T S + VA+TR
Sbjct 1020 -ERGYEEVSTFG-EINTVHEIQGETFEDVSVVRLTPTPLELISKSSPHVLVALTRHTKS 1076
>sp|P28726|1A_PSVJ Replication protein 1a OS=Peanut stunt virus
(strain J) OX=12314 GN=ORF1a PE=3 SV=1
Length=1005
Score = 46.2 bits (108), Expect = 9e-04, Method: Composition-based stats.
Identities = 57/307 (19%), Positives = 102/307 (33%), Gaps = 55/307 (18%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
S + G G GK+ L + P+ ++ TA +A D + C+ +
Sbjct 717 ISLVDGVAGCGKTTAIKKL--FQPATDLIVTANKKSAQDVRMALFGASDSKEACTFV--- 771
Query 337 RARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHY 396
T + + N +PE + V+ DE+ + L V ++L+A
Sbjct 772 -------------RTADSILL---NDVPEVSR--VLVDEVVLLHFGQLCAVMSKLKAVRA 813
Query 397 VYIGDPAQL-----PAPRTLLTKGTL--EPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIV 449
+ GD Q+ A + L E ++ R + + P + R + +
Sbjct 814 ICFGDSEQIAFGSRDASFDMRRSTILPDESSTSDTTFRSPQDVVPLVT-----RMAGKAL 868
Query 450 DTVSALVYDNKL---KAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAW 506
+ Y L K S +C ++ + R ++T A
Sbjct 869 PRGAKSKYSRWLSQSKVLNSVSQRCIP-------------SVALVDMDESRFYITMTQAD 915
Query 507 RKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETA--HSCNVNRFNVA 564
+ A I+ +S +TV SQG D+V + T + VA
Sbjct 916 K-AALITRAKELQMPSS-FYDNKIKTVHESQGISEDHVTLVRLKSTKCDLFKSFPYCLVA 973
Query 565 ITRAKVG 571
+TR KV
Sbjct 974 LTRHKVS 980
>sp|P87515|POLN_BFV Polyprotein P1234 OS=Barmah forest virus OX=11020
PE=3 SV=3
Length=2411
Score = 46.2 bits (108), Expect = 9e-04, Method: Composition-based stats.
Identities = 56/298 (19%), Positives = 96/298 (32%), Gaps = 63/298 (21%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS AI S ++ + C + + + + RI
Sbjct 717 VYGVPGSGKS--AIIKNTVTMSDLVL------SGKKENCLEIMNDVLKHRALRITAK--- 765
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
T++ + V P +I+ DE L A +R K V
Sbjct 766 -----------TVDSVLLNGVKHTP----NILYIDEAFSCHAGTLLATIAIVRPKQKVVL 810
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K + + V RRC +I VS L Y
Sbjct 811 CGDPKQCGFFNMMQLKVNYNHDICSEVFHK----------SISRRCTQDITAIVSKLHYQ 860
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
++++ + KG I D + + LT W K + Q
Sbjct 861 DRMRTTNPR---------KGDIIIDTTGT---TKPAKTDLILTCFRGWVKQL------QQ 902
Query 519 NAVASKILGLPTQTVDSSQGSEYDYVIFTQTT---ETAHSCNVNRFNVAITRAKVGIL 573
+ ++++ T +SQG V +T ++ NV +TR + ++
Sbjct 903 DYRGNEVM-----TAAASQGLTRASVYAVRTKVNENPLYAQTSEHVNVLLTRTENKLV 955
>sp|Q84687|RDRP_PCV87 Replicase large subunit OS=Peanut clump
virus (isolate 87/TGTA2) OX=652837 GN=rep PE=3 SV=2
Length=1672
Score = 44.7 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 63/348 (18%), Positives = 104/348 (30%), Gaps = 90/348 (26%)
Query 246 YVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIV 305
+ ++ +YP+L Q K + G PG GKS + + R +
Sbjct 834 FNKLVLVYPSL----------PKTQL----KVRLIDGVPGCGKSTWILS---NCDLDRQI 876
Query 306 YTACSHAAVDAL----CEKALKYLPIDKCSRII------PARARVECFDKFKVNSTLEQY 355
A A D L EK ++ R + P R F
Sbjct 877 VLAEGREATDDLRRRFTEKGFPKKRCEERVRTVHSFMLKPLSRRFNSFH----------- 925
Query 356 VFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKG 415
FDE MA + + L A+ + GD Q+P + +
Sbjct 926 -----------------FDEALMAHAGMIYICGRMLNAREVICQGDSKQIPFIN-RVEQI 967
Query 416 TLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMF 475
+L+ FN V R + RCP +IV Y NK K ++
Sbjct 968 SLKYSSFNVVEREH--------VRKTYRCPLDIV------YYLNKKKYYRGD------DI 1007
Query 476 YKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKIL----GLPTQ 531
T ++ L + P +++ ++ SK L G
Sbjct 1008 VGYSKTTHSVDTKSKSSGFTSLVKLPKEPVH----YLTFLQAEKEEVSKHLAGVKGATVS 1063
Query 532 TVDSSQGSEYDYVIFTQTTETAHSCNVNRF------NVAITRAKVGIL 573
TV +QG ++ V + T + V +TR ++
Sbjct 1064 TVHEAQGKTFERVNLVRLKMTDNELYPGGAKSEPYTIVGLTRHTRSLV 1111
>sp|Q65674|TGB1_BNYVS Movement protein TGB1 OS=Beet necrotic yellow
vein virus (isolate Japan/S) OX=652670 GN=ORF4 PE=3 SV=1
Length=384
Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats.
Identities = 46/309 (15%), Positives = 93/309 (30%), Gaps = 78/309 (25%)
Query 276 KYSTLQGPPGTGKSHFAIGL-ALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRII 334
+ + G PG GKS L + ++V ++ + L +D
Sbjct 117 RVGIVLGAPGVGKSTSIKNLLDKFGAKHKMVLCLPFSQLLEGVFAGRLDTFLVDD----- 171
Query 335 PARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK 394
+FC ++ + ++ DE++ ++ V+ L K
Sbjct 172 ---------------------LFC--RSVGYGKYNTMLVDEVTRVHMCEILVLAGHLGVK 208
Query 395 HYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVS- 453
+ + GDPAQ N ++ G A+++++ +
Sbjct 209 NVICFGDPAQ--------GLNYKAGSAVNYNFPIIAECYASRRFGKA---TADLINSSNG 257
Query 454 ---ALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAV 510
+V +N++K C K+ V
Sbjct 258 GGKPVVGNNEVKDSWTFEELCGKIL------------------------------DMSTV 287
Query 511 FISPYNSQNAVASKILGLPTQTVDSSQGSEYDYV--IFTQTTETAHSCNVNRFNVAITRA 568
++ +Q + + + + G YD V I + A C+ N V +TRA
Sbjct 288 LVATRETQKFLLED--NIESILYSDAHGQTYDVVTIILEDEFDDAAICDPNVRAVLLTRA 345
Query 569 KVGILCIMS 577
+ G + M
Sbjct 346 RKGGMIKMG 354
>sp|P08411|POLN_SFV Polyprotein P1234 OS=Semliki forest virus
OX=11033 PE=1 SV=2
Length=2432
Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats.
Identities = 46/259 (18%), Positives = 76/259 (29%), Gaps = 65/259 (25%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS L H V + + C I+
Sbjct 721 VFGVPGSGKSAIIKSLVT------------KHDLVTS--------GKKENCQEIVND--- 757
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
V+ + + + DI+ DE + L + A ++ + V
Sbjct 758 VKKHRGLDIQAKTVDSILLNG---CRRAVDILYVDEAFACHSGTLLALIALVKPRSKVVL 814
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K VC RRC + VS L Y
Sbjct 815 CGDPKQCGFFNMMQLKVNFNHNICTEVCHK----------SISRRCTRPVTAIVSTLHYG 864
Query 459 NKLKAHKDKSA-------------------QCFKMFYKGVI----THDVSSA-----INR 490
K++ + CF+ + K + H+V +A + R
Sbjct 865 GKMRTTNPCNKPIIIDTTGQTKPKPGDIVLTCFRGWVKQLQLDYRGHEVMTAAASQGLTR 924
Query 491 PQIGVVREFLTRNPAWRKA 509
+ VR+ + NP + A
Sbjct 925 KGVYAVRQKVNENPLYAPA 943
>sp|Q9RT63|RECD2_DEIRA ATP-dependent RecD2 DNA helicase OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871
/ CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM
B-1422 / R1) OX=243230 GN=recD2 PE=1 SV=1
Length=715
Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats.
Identities = 32/142 (23%), Positives = 47/142 (33%), Gaps = 25/142 (18%)
Query 270 QKVGMQKYSTLQGPPGTGKSHF--AIGLALYYPSARIVYTACSHAAVDALCE-KALKYLP 326
Q G + L G PGTGKS A+ + A + A L E
Sbjct 349 QLAG-HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTAST 407
Query 327 IDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATN-YDLS 385
+ + P R N L D+++ DE+SM + LS
Sbjct 408 VHRLLGYGPQGFR--------------------HNHLEPAPYDLLIVDEVSMMGDALMLS 447
Query 386 VVNARLRAKHYVYIGDPAQLPA 407
++ A + +GD QLP
Sbjct 448 LLAAVPPGARVLLVGDTDQLPP 469
>sp|P45612|UVRD_MYCCT Probable DNA helicase II homolog OS=Mycoplasma
capricolum subsp. capricolum (strain California kid /
ATCC 27343 / NCTC 10154) OX=340047 GN=uvrD PE=3 SV=2
Length=722
Score = 43.5 bits (101), Expect = 0.006, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 39/104 (38%), Gaps = 7/104 (7%)
Query 365 ETTADIVVFDEISMATNYDLSVVN-ARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFN 423
D V+ DE S++ + H +GDP Q T+ + + +
Sbjct 216 RNAYDYVLVDEFQDTNELQFSLIKFLTINTNHLTVVGDPDQ-----TIYSWRGAKLDIIL 270
Query 424 SVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDK 467
+ + + L R +I+D ++ + +NK + HK+
Sbjct 271 NFNKTYSNAI-SIVLNQNYRSTKQILDISNSFIKNNKFREHKEI 313
>sp|P90211|RDRP_TMOB Replicase large subunit OS=Tobamovirus Ob
OX=31749 PE=3 SV=1
Length=1616
Score = 43.5 bits (101), Expect = 0.006, Method: Composition-based stats.
Identities = 45/302 (15%), Positives = 79/302 (26%), Gaps = 48/302 (16%)
Query 272 VGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCS 331
V K + + G PG GK+ + + + A A+ ++
Sbjct 822 VSSAKVTLVDGVPGCGKTKEILRRVNFSED---LVLVPGKEAA------AMIRKRANQSG 872
Query 332 RIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARL 391
I+ V+ D F + P + DE M + +
Sbjct 873 NIVANNDNVKTVDSF----------LMNLGKGPVCQFKRLFVDEGLMLHPGCVYFLVKLS 922
Query 392 RAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDT 451
GD Q+P + +L+ T RCP ++
Sbjct 923 LCNEAFVFGDTQQIPYIN-----RVQNFPFPQHFSKLIVDETEKR--RTTLRCPVDVTHF 975
Query 452 VSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVF 511
++ YD + G V + + +P G + F + + +
Sbjct 976 LN-QCYDGAVTTTSKTQRSVGLEVVGGAA---VMNPVTKPLKGKIVTFT---QSDKLTML 1028
Query 512 ISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR---FNVAITRA 568
Y TV QG Y+ V + T T V +TR
Sbjct 1029 SRGYQ------------DVNTVHEIQGETYEEVSLVRLTPTPIHIISRESPHVLVGLTRH 1076
Query 569 KV 570
Sbjct 1077 TR 1078
>sp|P03588|1A_BMV Replication protein 1a OS=Brome mosaic virus
OX=12302 GN=ORF1a PE=1 SV=1
Length=961
Score = 43.5 bits (101), Expect = 0.006, Method: Composition-based stats.
Identities = 50/310 (16%), Positives = 92/310 (30%), Gaps = 60/310 (19%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
S + G G GK+ + ++ TA +A D ++
Sbjct 679 DISMVDGVAGCGKTTAI--KDAFRMGEDLIVTANRKSAEDVRMALFPDTYNSKVALDVV- 735
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKH 395
T + + + +P ++ DE + L VV A +
Sbjct 736 --------------RTADSAIM---HGVPSCHR--LLVDEAGLLHYGQLLVVAALSKCSQ 776
Query 396 YVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSAL 455
+ GD Q+ + + N + RCP +++ V+ L
Sbjct 777 VLAFGDTEQI---SFKSRDAGFKLLHGNL------QYDRRDVVHKTYRCPQDVIAAVNLL 827
Query 456 ---------VYDNKLKAHKDKSAQCFKMFYKG-VITHDVSSAINRPQIGVVREFLTRNPA 505
Y + K + + G +T D + R +LT A
Sbjct 828 KRKCGNRDTKYQSWTSESKVSRSLTKRRITSGLQVTIDPN-----------RTYLTMTQA 876
Query 506 WRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFN--- 562
+ A + V+ + +TV +QG D V + T C++ +
Sbjct 877 DKAA--LQTRAKDFPVSKDWIDGHIKTVHEAQGISVDNVTLVRLKSTK--CDLFKHEEYC 932
Query 563 -VAITRAKVG 571
VA+TR K
Sbjct 933 LVALTRHKKS 942
>sp|P27752|1A_CCMV Replication protein 1a OS=Cowpea chlorotic
mottle virus OX=12303 GN=ORF1a PE=2 SV=1
Length=958
Score = 43.1 bits (100), Expect = 0.007, Method: Composition-based stats.
Identities = 62/325 (19%), Positives = 109/325 (34%), Gaps = 65/325 (20%)
Query 267 ANYQKVGMQ---------KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDAL 317
ANYQ + K S G G GK+ + + +V TA +A D
Sbjct 658 ANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAI--KSASNIAEHLVVTANKKSAEDVR 715
Query 318 CEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEIS 377
P + S I FKV T + + + LP ++ DE
Sbjct 716 EA----LFPHNPSSEIA-----------FKVIRTADSALM---HGLPRCKR--LLVDEAG 755
Query 378 MATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMF 437
+ L V A + + + GD Q+ T +Y + ++ D+
Sbjct 756 LLHYGQLLAVAALCKCQSVLAFGDTEQI---SFKSRDATFRLKYGD-----LQFDSRDIV 807
Query 438 LGTCRRCPAEIVDTVSALV--------YDNKLKAHKDKSAQCFKMFYKGVITHDVSSAIN 489
RCP +++ V L Y K+H S +H ++
Sbjct 808 -TETWRCPQDVISAVQTLKRGGNRTSKYLGW-KSHSKVSRSI---------SHKEIASPL 856
Query 490 RPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQT 549
+ + + +LT A + A +S + + +TV +QG D+ + +
Sbjct 857 QVTLSREKFYLTMTQADK-AALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRL 915
Query 550 TETAHSCNVNRFN----VAITRAKV 570
T C++ + VA+TR K+
Sbjct 916 KSTK--CDLFKTEEYCLVALTRHKI 938
>sp|Q64962|RDRP_ASPVP RNA replication polyprotein OS=Apple stem
pitting virus (isolate PA66) OX=651356 GN=ORF1 PE=3 SV=1
Length=2183
Score = 43.1 bits (100), Expect = 0.008, Method: Composition-based stats.
Identities = 23/136 (17%), Positives = 47/136 (35%), Gaps = 11/136 (8%)
Query 270 QKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDK 329
+ V +K + G G GKS P I + + + +++ D
Sbjct 1362 ELVHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESI--------NHDL 1413
Query 330 CSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNA 389
+ + + D V + ++++ E VV DEI + + ++
Sbjct 1414 GLARVGGKKTGKSKDLKNVRVKTFELFILHLDSIKEGH--TVVIDEIQLFPPGYIDLIIL 1471
Query 390 RLRAK-HYVYIGDPAQ 404
L+ + + GDP Q
Sbjct 1472 GLKPNVNIIIAGDPCQ 1487
>sp|P35928|POLR_ELV RNA replicase polyprotein OS=Erysimum latent
virus OX=12152 PE=3 SV=1
Length=1748
Score = 43.1 bits (100), Expect = 0.008, Method: Composition-based stats.
Identities = 49/220 (22%), Positives = 74/220 (34%), Gaps = 47/220 (21%)
Query 357 FCTVNALPETTADIVVFDEISMATN--YDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTK 414
F T + A+I+V DEI DLS++ K + +GDP Q T
Sbjct 923 FSTWESALLKHAEILVIDEIYKLPRGYLDLSLIADP-TVKLVILLGDPLQGEYHSTSAHS 981
Query 415 GTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKM 474
L + + RL+ I D + R P + S ++
Sbjct 982 SNL--RLSSEIPRLLPFI--DYYCYWSYRVPKCVAKLFSLPCFN---------------- 1021
Query 475 FYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAV-ASKILGLPTQTV 533
P G ++ L P+ V NS + V S+ G T+
Sbjct 1022 ----------------PSEGFIKTTLDFFPSANNLV-----NSHSVVHISEACGWNAVTI 1060
Query 534 DSSQGSEY-DYVIFTQTTETAHSCNVNRFNVAITRAKVGI 572
SSQG + D TA N VA+TR++ G+
Sbjct 1061 SSSQGCTFSDPAFIHLDRNTALLSPSNCL-VALTRSRSGV 1099
>sp|Q5XXP4|POLN_CHIK3 Polyprotein P1234 OS=Chikungunya virus (strain
37997) OX=371095 PE=1 SV=1
Length=2474
Score = 43.1 bits (100), Expect = 0.008, Method: Composition-based stats.
Identities = 49/292 (17%), Positives = 81/292 (28%), Gaps = 63/292 (22%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS L + T+ + ++ ++ +R + +
Sbjct 719 VFGVPGSGKSAIIKNLVTRQD----LVTSGKKENCQEISTDVMRQRNLEISARTVDSLLL 774
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
C D++ DE + L + A +R + V
Sbjct 775 NGCNRP----------------------VDVLYVDEAFACHSGTLLALIALVRPRQKVVL 812
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K V RRC + VS+L Y+
Sbjct 813 CGDPKQCGFFNMMQMK----------VNYNHNICTQVYHKSISRRCTLPVTAIVSSLHYE 862
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
K++ + + G D LT W K + I Y
Sbjct 863 GKMRTTNEYNKPIVVDT-TGSTKPDPGD-----------LVLTCFRGWVKQLQID-YR-- 907
Query 519 NAVASKILGLPTQTVDSSQGSEYDYVIFTQ---TTETAHSCNVNRFNVAITR 567
G T +SQG V + ++ NV +TR
Sbjct 908 --------GHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTR 951
>sp|Q66121|1A_CMVIX Replication protein 1a OS=Cucumber mosaic
virus (strain Ixora) OX=117114 GN=ORF1a PE=3 SV=1
Length=993
Score = 42.8 bits (99), Expect = 0.009, Method: Composition-based stats.
Identities = 59/299 (20%), Positives = 105/299 (35%), Gaps = 41/299 (14%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
S + G G GK+ +++ PS +V TA +A D + C+ +
Sbjct 709 ISQVDGVAGCGKTTAI--KSIFEPSTDMVVTANKKSAQDVRMALFKSSDSKEACTFV--- 763
Query 337 RARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHY 396
T + + N P + V+ DE+ + L V ++L+A
Sbjct 764 -------------RTADSVLL---NECPTVSR--VLVDEVVLLHFGQLCAVMSKLKAVRA 805
Query 397 VYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALV 456
+ GD Q + + + + +++ D T R P ++V V L+
Sbjct 806 ICFGDSEQ-------IAFSSRDASFDMRFSKIIPDETSDA--DTTFRSPQDVVPLV-RLM 855
Query 457 YDNKLKAHKDK--SAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
L + + K +T S++ + R ++T A + A IS
Sbjct 856 ATKALPRGTHSKYTKWVSQSKVKRSVTSRAISSVTLVDLDSSRFYITMTQADK-ASLISR 914
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFN---VAITRAKV 570
N + +TV SQG D+V + T +F+ VA+TR KV
Sbjct 915 AKEMN-LPKTFWNERIKTVHESQGISEDHVTLVRLKSTKCDL-FKQFSYCLVALTRHKV 971
>sp|Q83943|1A_OLV2I Replication protein 1a OS=Olive latent virus
2 (isolate Italy) OX=650489 GN=ORF1a PE=3 SV=1
Length=908
Score = 42.4 bits (98), Expect = 0.014, Method: Composition-based stats.
Identities = 63/329 (19%), Positives = 111/329 (34%), Gaps = 56/329 (17%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
K + + G G GK++ + A + D L A K D S++ P
Sbjct 625 KKTWIDGVAGCGKTYEIVHTADIFKK-------------DDLILTANKKSQEDIFSQLKP 671
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKH 395
+C + + T++ Y+ P+ A + DE + L
Sbjct 672 G---TDCAKRIR---TVDSYLLK-----PDVQAKRLFIDEAGLVHPGKLLAAMRFAECDD 720
Query 396 YVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSAL 455
+ GD Q+P + + L+P F L + T RCPA++ T++ L
Sbjct 721 CLLFGDSEQIPFVNIVES---LQPAKF-----LKLEVDAREVRETTYRCPADVTATLATL 772
Query 456 VYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWR-KAVFISP 514
K+ + +SA++ LT A + + V ++
Sbjct 773 YKKKKIVTKSKVLKSV------TSKSLASASAVSGLDPHSWH--LTMYQADKAELVRVAR 824
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQ-------TTETAHSCNVNRFNVAITR 567
N + V K +TV +QG +V + + AH+ VAI+R
Sbjct 825 TNQMDDVWIKE---HIKTVHEAQGISVPHVKLYRFKTFDQPLFDAAHAEAYR--LVAISR 879
Query 568 AKVGILCIMSDRDLYDK---LQFTSLEIP 593
I ++ L L+F +IP
Sbjct 880 HTQSFTYIGVNQHLCKADRMLKFVICQIP 908
>sp|Q58889|PRS2_METJA Putative 26S proteasome regulatory subunit
homolog MJ1494 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232
GN=MJ1494 PE=3 SV=2
Length=371
Score = 41.6 bits (96), Expect = 0.016, Method: Composition-based stats.
Identities = 33/124 (27%), Positives = 46/124 (37%), Gaps = 11/124 (9%)
Query 193 VQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAP-----TLVPQEHYV 247
V+ G+Y F+ D ++ +TY G TS TV L P T + +
Sbjct 69 VKEGDYLFDNSILPD-YAFKVISTYPKEGGMI---TSETVFKLQTPKKVLRTQFKKAKFS 124
Query 248 RITGLYPTLNISDEFSSNVANYQKVGM--QKYSTLQGPPGTGKSHFAIGLALYYPSARIV 305
I G + N + G K GPPGTGK+ A LA S+ I+
Sbjct 125 EIIGQEEAKKKCRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFIL 184
Query 306 YTAC 309
A
Sbjct 185 VKAP 188
>sp|Q1KZ59|POLG_CILVC RNA replication protein OS=Citrus leprosis
virus C (isolate Citrus sinesis/Brazil/Cordeiropolis/2003)
OX=686950 PE=4 SV=1
Length=2512
Score = 42.4 bits (98), Expect = 0.016, Method: Composition-based stats.
Identities = 46/315 (15%), Positives = 92/315 (29%), Gaps = 45/315 (14%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+Q G GK+ + L + + D++ + + P + R
Sbjct 1558 VQAVAGAGKTTLLVETFLITD----LVVCPTVENRDSIRLRIKRRYPDLDPKEV---DCR 1610
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI 399
V + + V+ + + L E T ++ DE M L V+ + +
Sbjct 1611 VRTINGYLVDFSTKLAKV----TLNENTR--LLVDEAIMYHAGCLFVLCMIYNIRRMFCV 1664
Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPD--MFLGTCRRCPAEIVDTVSALVY 457
GD Q+P + F + L R P ++ Y
Sbjct 1665 GDKKQIP---------FVSRIDFKLNYEKLCDFVNTEARPLARTFRSPPDVT-------Y 1708
Query 458 DNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNS 517
+ K + K T S + + + R + + N
Sbjct 1709 RMQQIYGKSLKGLTIQCLSKNQDTSPSVSKLVITKNYRFGQNFIREVFEKDKIDFDGKNL 1768
Query 518 QNAVASK------------ILGLPTQTVDSSQGSEYDYVIFTQTTETAHSC--NVNRFNV 563
+ + I T+ QGS+ +YV+ + T S + + V
Sbjct 1769 RILFFLREDMLSFYGNGGMIFTDCCSTIHQFQGSDAEYVVVMRLTYAEKSIFMDERQCLV 1828
Query 564 AITRAKVGILCIMSD 578
A+TR ++ + +
Sbjct 1829 ALTRHTKRMVYVSVN 1843
>sp|Q8QZ73|POLN_MAYAB Polyprotein P1234 OS=Mayaro virus (strain
Brazil) OX=374990 PE=1 SV=3
Length=2437
Score = 42.0 bits (97), Expect = 0.018, Method: Composition-based stats.
Identities = 53/300 (18%), Positives = 93/300 (31%), Gaps = 79/300 (26%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS L L K + C I+
Sbjct 720 VFGVPGSGKSGIIKSLVTR----------------GDLVASGKK----ENCQEIM---LD 756
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVY 398
V+ + + + V N + +T D++ DE L + A +R K V
Sbjct 757 VKRYRDLDMTAKTVDSVLL--NGVKQTV-DVLYVDEAFACHAGTLLALIATVRPRKKVVL 813
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFL-----GTCRRCPAEIVDTVS 453
GDP Q +FN + +L ++ RRC I VS
Sbjct 814 CGDPKQC--------------GFFNLM-QLQVNFNHNICTEVDHKSISRRCTLPITAIVS 858
Query 454 ALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFIS 513
L Y+ +++ N+P V+ + + R+ + ++
Sbjct 859 TLHYEGRMRTTNP---------------------YNKP---VIIDTTGQTKPNREDIVLT 894
Query 514 PYN---SQNAVASKILGLPTQTVDSSQGSEYDYVIFTQ---TTETAHSCNVNRFNVAITR 567
+ Q + + G T +SQG V + ++ + NV +TR
Sbjct 895 CFRGWVKQLQLDYR--GHEVMTAAASQGLTRKGVYAVRMKVNENPLYAQSSEHVNVLLTR 952
>sp|Q8QL53|POLN_SLDV Polyprotein P1234 OS=Sleeping disease virus
OX=78540 PE=3 SV=1
Length=2593
Score = 42.0 bits (97), Expect = 0.018, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 64/208 (31%), Gaps = 39/208 (19%)
Query 365 ETTADIVVFDEISMATNYDLSVVNARLRAK-HYVYIGDPAQLPAPRTLLTKGTLEPEYFN 423
D + DE + L + A +R V GDP Q+ L + E +
Sbjct 807 RGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEISD 866
Query 424 SVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHD 483
V R RRC + VS L Y+ ++K K + D
Sbjct 867 RVLRK----------NISRRCTHTLTAIVSNLNYEGRMKTTNP---------CKKPVLID 907
Query 484 VSSAINRPQIGVVREFLTRNPAW-RKAVFISPYNSQNAVASKILGLPTQTVDSSQG--SE 540
+ + + LT W + + P+N T +SQG E
Sbjct 908 TTGS---TKPDKEALVLTCFRGWVKDLKILYPHN------------ELMTAAASQGLTRE 952
Query 541 YDYVIFTQ-TTETAHSCNVNRFNVAITR 567
Y + + T+ + V +TR
Sbjct 953 KVYAVRCRVTSNPLYEPTSEHITVLLTR 980
>sp|Q0IE10|UVRB_SYNS3 UvrABC system protein B OS=Synechococcus
sp. (strain CC9311) OX=64471 GN=uvrB PE=3 SV=1
Length=679
Score = 41.6 bits (96), Expect = 0.020, Method: Composition-based stats.
Identities = 42/240 (18%), Positives = 82/240 (34%), Gaps = 12/240 (5%)
Query 273 GMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSR 332
G ++Y TL G GTGK+ F + + + A + LC + ++ P +
Sbjct 29 GGERYQTLLGATGTGKT-FTMANVIAQTGRPALVLAHNKTLAAQLCNELREFFPHNAVEY 87
Query 333 IIPARARVECFDKFKVNSTLEQYVFCTVNALP--ETTADIVVFDEISMATNYDLSVVNAR 390
I + V+ T + +A +F+ + +S +
Sbjct 88 FISYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRHSATRSLFERRDVIVVASISCIYGL 147
Query 391 LRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVD 450
Y+ P + TL +G+L N R G F R ++++
Sbjct 148 GIPSEYLKAAVPFK--VGETLNLRGSLRDLVNNQYSRNDTEAGRGRF-----RVKGDVLE 200
Query 451 TVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAV 510
A YD++L + + + Y T ++ +++ I + F+T AV
Sbjct 201 IGPA--YDDRLVRVELFGDEVEAIRYVDPTTGEILQSLDAISIYPAKHFVTPKERLNDAV 258
>sp|P39369|YJHR_ECOLI Putative uncharacterized protein YjhR OS=Escherichia
coli (strain K12) OX=83333 GN=yjhR PE=5 SV=1
Length=338
Score = 41.2 bits (95), Expect = 0.023, Method: Composition-based stats.
Identities = 26/98 (27%), Positives = 43/98 (44%), Gaps = 20/98 (20%)
Query 504 PAWRKAVFISPYNSQ-NAVASKILGLPTQ-----------TVDSSQGSEYDYVIFTQTTE 551
P ++ ++P+++Q NA+ + L TV S QG+E V+F+
Sbjct 45 PLYKVVGVVTPFSAQVNAIKMSLRKLEINGKDEQGLLTVGTVHSLQGAERAIVLFSPV-Y 103
Query 552 TAH------SCNVNRFNVAITRAKVGILCIMSDRDLYD 583
+ H N NVA++RAK L + D DL +
Sbjct 104 SKHEDGRFLDSNSTILNVAVSRAKDSFL-VFGDMDLIE 140
>sp|Q8JUX6|POLN_CHIKS Polyprotein P1234 OS=Chikungunya virus (strain
S27-African prototype) OX=371094 PE=1 SV=1
Length=2474
Score = 41.2 bits (95), Expect = 0.030, Method: Composition-based stats.
Identities = 49/292 (17%), Positives = 81/292 (28%), Gaps = 63/292 (22%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS L + T+ + ++ ++ +R + +
Sbjct 719 VFGVPGSGKSAIIKNLVTRQD----LVTSGKKENCQEITTDVMRQRGLEISARTVDSLLL 774
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
C D++ DE + L + A +R + V
Sbjct 775 NGCNRP----------------------VDVLYVDEAFACHSGTLLALIALVRPRQKVVL 812
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K V RRC + VS+L Y+
Sbjct 813 CGDPKQCGFFNMMQMK----------VNYNHNICTQVYHKSISRRCTLPVTAIVSSLHYE 862
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
K++ + + G D LT W K + I Y
Sbjct 863 GKMRTTNEYNKPIVVDT-TGSTKPDPGD-----------LVLTCFRGWVKQLQID-YR-- 907
Query 519 NAVASKILGLPTQTVDSSQGSEYDYVIFTQ---TTETAHSCNVNRFNVAITR 567
G T +SQG V + ++ NV +TR
Sbjct 908 --------GHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTR 951
>sp|Q04610|POLN_HEVMY Non-structural polyprotein pORF1 OS=Hepatitis
E virus genotype 1 (isolate Human/Myanmar/HEVNE8L) OX=31769
GN=ORF1 PE=1 SV=1
Length=1693
Score = 41.2 bits (95), Expect = 0.033, Method: Composition-based stats.
Identities = 50/305 (16%), Positives = 85/305 (28%), Gaps = 88/305 (29%)
Query 273 GMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSR 332
G+ +Y G PG+GKS + V + +A + +R
Sbjct 966 GVVQYQFTAGVPGSGKSRSITQADVD------VVVVPTRELRNAWRRRGFAAFNPHTAAR 1019
Query 333 IIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLR 392
+ R VV DE + L + R
Sbjct 1020 VTQGRR--------------------------------VVIDEAPSLPPHLLLLHMQRAA 1047
Query 393 AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTV 452
H +GDP Q+PA ++ E+ V + +GP + RCPA++ + +
Sbjct 1048 TVH--LLGDPNQIPA---------IDFEHAGLVPAIRPDLGPTSWWHVTHRCPADVCELI 1096
Query 453 SALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFI 512
+++ + + G P +G F A
Sbjct 1097 RGAY------PMIQTTSRVLRSLFWGE-----------PAVGQKLVFTQAAKAANPGSV- 1138
Query 513 SPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR--FNVAITRAKV 570
TV +QG+ Y T + +R VA+TR
Sbjct 1139 -------------------TVHEAQGATYTETTIIATADARGLIQSSRAHAIVALTRHTE 1179
Query 571 GILCI 575
+ I
Sbjct 1180 KFVII 1184
>sp|Q8K9A8|RECD_BUCAP RecBCD enzyme subunit RecD OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) OX=198804 GN=recD
PE=3 SV=1
Length=602
Score = 40.8 bits (94), Expect = 0.038, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query 369 DIVVFDEISMATNYDLSVVNARLRAK-HYVYIGDPAQL-PAPRTLLTK 414
DI++ DE SM +S + + L K ++IGD QL P + + K
Sbjct 267 DILIIDEASMIDILMMSNILSALSKKTKIIFIGDHNQLKPVKSSSILK 314
>sp|O40976|1A_CMVNT Replication protein 1a OS=Cucumber mosaic
virus (strain NT9) OX=117124 GN=ORF1a PE=3 SV=1
Length=993
Score = 40.8 bits (94), Expect = 0.044, Method: Composition-based stats.
Identities = 57/299 (19%), Positives = 105/299 (35%), Gaps = 41/299 (14%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
S + G G GK+ +++ PS ++ TA +A D + C+ +
Sbjct 709 ISQVDGVAGCGKTTAI--KSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFV--- 763
Query 337 RARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHY 396
T + + N P + V+ DE+ + L V ++L+A
Sbjct 764 -------------RTADSVLL---NECPTVSR--VLVDEVVLLHFGQLCAVMSKLKAVRA 805
Query 397 VYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALV 456
+ GD Q + + + + +++ D T R P ++V V L+
Sbjct 806 ICFGDSEQ-------IAFSSRDASFDMRFSKIIPDETSDA--DTTFRSPQDVVPLV-RLM 855
Query 457 YDNKLKAHKDK--SAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
L + + K +T +++ + R ++T A + A IS
Sbjct 856 ATKALPKGTHSKYTKWVSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADK-ASLISR 914
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFN---VAITRAKV 570
N + +TV SQG D+V + T +F+ VA+TR KV
Sbjct 915 AKEMN-LPKTFWNERIKTVHESQGISEDHVTLVRLKSTKCDL-FKQFSYCLVALTRHKV 971
>sp|P17769|1A_CMVFN Replication protein 1a OS=Cucumber mosaic
virus (strain FNY) OX=12307 GN=ORF1a PE=3 SV=2
Length=993
Score = 40.8 bits (94), Expect = 0.044, Method: Composition-based stats.
Identities = 57/299 (19%), Positives = 105/299 (35%), Gaps = 41/299 (14%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
S + G G GK+ +++ PS ++ TA +A D + C+ +
Sbjct 709 ISQVDGVAGCGKTTAI--KSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFV--- 763
Query 337 RARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHY 396
T + + N P + V+ DE+ + L V ++L+A
Sbjct 764 -------------RTADSVLL---NECPTVSR--VLVDEVVLLHFGQLCAVMSKLKAVRA 805
Query 397 VYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALV 456
+ GD Q + + + + +++ D T R P ++V V L+
Sbjct 806 ICFGDSEQ-------IAFSSRDASFDMRFSKIIPDETSDA--DTTFRSPQDVVPLV-RLM 855
Query 457 YDNKLKAHKDK--SAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
L + + K +T +++ + R ++T A + A IS
Sbjct 856 ATKALPKGTHSKYTKWVSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADK-ASLISR 914
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFN---VAITRAKV 570
N + +TV SQG D+V + T +F+ VA+TR KV
Sbjct 915 AKEMN-LPKTFWNERIKTVHESQGISEDHVTLVRLKSTKCDL-FKQFSYCLVALTRHKV 971
>sp|Q8JJX1|POLN_SPDV Polyprotein P1234 OS=Salmon pancreas disease
virus OX=84589 PE=3 SV=1
Length=2601
Score = 40.4 bits (93), Expect = 0.057, Method: Composition-based stats.
Identities = 41/208 (20%), Positives = 65/208 (31%), Gaps = 39/208 (19%)
Query 365 ETTADIVVFDEISMATNYDLSVVNARLRAK-HYVYIGDPAQLPAPRTLLTKGTLEPEYFN 423
+ + DE + L + A +R V GDP Q+ L + E +
Sbjct 808 RGAVNTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEISD 867
Query 424 SVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHD 483
V R RRC + VS L Y+ ++K K + D
Sbjct 868 RVLRK----------NISRRCTHTLTAIVSNLNYEGRMKTTNP---------CKKPVLID 908
Query 484 VSSAINRPQIGVVREFLTRNPAW-RKAVFISPYNSQNAVASKILGLPTQTVDSSQG--SE 540
+ + + LT W + F+ P+N T +SQG E
Sbjct 909 TTGS---TKPDKEALVLTCFRGWVKDLKFLYPHN------------ELMTAAASQGLTRE 953
Query 541 YDYVIFTQ-TTETAHSCNVNRFNVAITR 567
Y + + TT + V +TR
Sbjct 954 KVYAVRCRVTTNPLYEPTSEHITVLLTR 981
>sp|P17965|RDRP_PVMR RNA replication polyprotein OS=Potato virus
M (strain Russian) OX=12168 GN=ORF1 PE=3 SV=2
Length=1968
Score = 40.4 bits (93), Expect = 0.061, Method: Composition-based stats.
Identities = 52/339 (15%), Positives = 110/339 (32%), Gaps = 65/339 (19%)
Query 257 NISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDA 316
N+ ++F NV+ + G G+GKS L Y + + + A +
Sbjct 1148 NMREKFVRNVSLSLHA-------IVGTFGSGKSTLFKNLLKYGAGKSLDFVSPRRALAED 1200
Query 317 LCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEI 376
++ + ++ RV T + V L E +V+ DE+
Sbjct 1201 F-KRTVGMNERGGRAKAGQENWRV----------TTLETFLARVEFLTEGQ--VVILDEM 1247
Query 377 SMATN--YDLSVVNARLRAKHYVYIGDPAQ--LPAPRTLLTKGTLEPEYFNSVCRLMKTI 432
+ +DL V ++ +GDPAQ + + L G +E +
Sbjct 1248 QLYPPGYFDLVVSMLKVDV-RLFLVGDPAQSDYDSEKDRLVLGAMEENMSVVL------- 1299
Query 433 GPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHD-VSSAINRP 491
A Y+ K+++H + + G + +
Sbjct 1300 --------------------GAREYNYKVRSH-----RFLNCNFIGRLPCEINKDDCTID 1334
Query 492 QIGVVREFLTRN----PAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDY-VIF 546
+ ++R L ++ V +S ++ + V + + T S G + + I+
Sbjct 1335 EPHIMRMHLENLLDVAEEYKSVVLVSSFDEKMVVCAHLPEAKVLTFGESTGLTFMHGTIY 1394
Query 547 TQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKL 585
+ + N R+ A+ R + + + Y +L
Sbjct 1395 --ISAVSERTNERRWITALRRFRFNLCFVNCSGMDYQQL 1431
>sp|O90368|POLN_ONNVS Polyprotein P1234 OS=O'nyong-nyong virus
(strain SG650) OX=374989 PE=1 SV=1
Length=2513
Score = 40.4 bits (93), Expect = 0.062, Method: Composition-based stats.
Identities = 49/298 (16%), Positives = 90/298 (30%), Gaps = 63/298 (21%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS L + T+ + ++ ++ +R + +
Sbjct 719 VFGVPGSGKSAIIKNLVTRQD----LVTSGKKENCQEISNDVMRQRKLEISARTVDSLLL 774
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
C +++ DE + L + A +R + V
Sbjct 775 NGCN----------------------KPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVL 812
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K V RRC + VS+L Y+
Sbjct 813 CGDPKQCGFFNMMQMK----------VNYNHNICTQVYHKSISRRCTLPVTAIVSSLHYE 862
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
+K++ + + ++ I +P+ G LT W K + I Y
Sbjct 863 SKMRTTNEYNQPI----------VVDTTGITKPEPG--DLVLTCFRGWVKQLQID-YR-- 907
Query 519 NAVASKILGLPTQTVDSSQGSEYDYVIFTQ---TTETAHSCNVNRFNVAITRAKVGIL 573
G T +SQG V + ++ NV +TR + ++
Sbjct 908 --------GNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGKLI 957
>sp|F4J0C0|AATPA_ARATH AAA-ATPase At3g28600 OS=Arabidopsis thaliana
OX=3702 GN=At3g28600 PE=2 SV=1
Length=477
Score = 40.1 bits (92), Expect = 0.064, Method: Composition-based stats.
Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)
Query 256 LNISDEFSSNVANYQKVGM--QKYSTLQGPPGTGKSHFAIGLA 296
LN FS+ Y+K+G ++ L GPPGTGKS +A
Sbjct 217 LNDLAAFSNGKEYYKKIGKAWKRGYLLHGPPGTGKSTMIAAMA 259
>sp|P04867|TGB1_BSMV Movement protein TGB1 OS=Barley stripe mosaic
virus OX=12327 PE=1 SV=1
Length=528
Score = 40.1 bits (92), Expect = 0.066, Method: Composition-based stats.
Identities = 51/309 (17%), Positives = 98/309 (32%), Gaps = 102/309 (33%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS L A ++ A+ +D
Sbjct 267 ISGVPGSGKSTIVRTLLK---GEFPAVCALANPALMNDYSGIEGVYGLDD---------- 313
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYI 399
++A+P T+D+++ DE ++A + ++ ++ RLRA + +
Sbjct 314 ------------------LLLSAVP-ITSDLLIIDEYTLAESAEILLLQRRLRASMVLLV 354
Query 400 GDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDN 459
GD AQ A T ++E + L R S Y
Sbjct 355 GDVAQGKA----TTASSIEY----------------LTLPVIYR---------SETTY-- 383
Query 460 KLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQN 519
+ + +S ++ +V + R V I+ Y+ +
Sbjct 384 -------------------RLGQETASLCSKQGNRMVSK------GGRDTVIITDYDGET 418
Query 520 AVASKILGLPTQTV--------DSS-----QGSEYD-YVIFTQTTETAHSCNVNRFNVAI 565
K + TV D + QG E+D +F + + + + VA+
Sbjct 419 DETEKNIAFTVDTVRDVKDCGYDCALAIDVQGKEFDSVTLFLRNEDRKALADKHLRLVAL 478
Query 566 TRAKVGILC 574
+R K ++
Sbjct 479 SRHKSKLII 487
>sp|P20122|1A_CMVO Replication protein 1a OS=Cucumber mosaic virus
(strain O) OX=12309 GN=ORF1a PE=3 SV=1
Length=993
Score = 40.1 bits (92), Expect = 0.067, Method: Composition-based stats.
Identities = 56/299 (19%), Positives = 103/299 (34%), Gaps = 41/299 (14%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
S + G G GK+ +++ PS ++ TA +A + K + +
Sbjct 709 ISQVDGVAGCGKTTAI--KSIFEPSTDMIVTANKKSA-QDVRMALFKSSDSKEACAFVRT 765
Query 337 RARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHY 396
V +N P + V+ DE+ + L V ++L+A
Sbjct 766 ADSV------------------LLNECPTVSR--VLVDEVVLLHFGQLCAVMSKLKAVRA 805
Query 397 VYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALV 456
+ GD Q + + + + +++ D T R P ++V V L+
Sbjct 806 ICFGDSEQ-------IAFSSRDASFDMRFSKIIPDETSDA--DTTFRSPQDVVPLV-RLM 855
Query 457 YDNKLKAHKDK--SAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISP 514
L + + K +T +++ + R ++T A + A IS
Sbjct 856 ATKALPKGTHSKYTKWVSQSKVKRSVTSRSIASVTLVDLDSSRFYITMTQADK-ASLISR 914
Query 515 YNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFN---VAITRAKV 570
N + +TV SQG D+V + T +F+ VA+TR KV
Sbjct 915 AKEMN-LPKTFWNERIKTVHESQGISEDHVTLVRLKSTKCDL-FKQFSYCLVALTRHKV 971
>sp|Q971T7|RGYR1_SULTO Reverse gyrase 1 OS=Sulfurisphaera tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063
GN=rgy1 PE=1 SV=1
Length=1156
Score = 40.1 bits (92), Expect = 0.071, Method: Composition-based stats.
Identities = 19/129 (15%), Positives = 54/129 (42%), Gaps = 3/129 (2%)
Query 244 EHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSAR 303
E + I ++ + ++ ++ +++ + +L P G GK+ + +L++ S
Sbjct 65 ETFEEIVRIFKRVIGNEPWNLQKYWIKRLAKSESFSLSAPTGLGKTTTLLVYSLFF-SNT 123
Query 304 IVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNAL 363
+Y +++ D +CE+ C+ + V F++ + + YV +
Sbjct 124 TLYVVPTNSLKDQICERLRNMGAKVSCNDVKEEYINVATFNR--ILRHYDNYVSLQPKLV 181
Query 364 PETTADIVV 372
+D+++
Sbjct 182 IVDDSDMIL 190
>sp|P06011|1A_CMVQ Replication protein 1a OS=Cucumber mosaic virus
(strain Q) OX=12310 GN=ORF1a PE=3 SV=1
Length=991
Score = 39.7 bits (91), Expect = 0.081, Method: Composition-based stats.
Identities = 58/301 (19%), Positives = 107/301 (36%), Gaps = 46/301 (15%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
S + G G GK+ +++ PS I+ TA +A D
Sbjct 708 ISQVDGVAGCGKTTAI--KSMFNPSTDIIVTANKKSAQDV-------------------- 745
Query 337 RARVECFDKFKVNSTLEQYVFC-TVNALPETTADIV---VFDEISMATNYDLSVVNARLR 392
+ FK + E F T +++ V + DE+ + L V ++L
Sbjct 746 -----RYALFKSTDSKEACAFVRTADSILLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLH 800
Query 393 AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTV 452
A + GD Q + + + + +L+ D T R P ++V V
Sbjct 801 AVRALCFGDSEQ-------IAFSSRDASFDMRFSKLIPDETSDA--DTTFRSPQDVVPLV 851
Query 453 SALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFI 512
+ K + K + + + +T ++++ ++ R ++T A + A I
Sbjct 852 RLMATKALPKGTRTKYSDGAQSKVRKSVTSRAVASVSLVELDPTRFYITMTQADK-ASLI 910
Query 513 SPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFN---VAITRAK 569
+ N + +TV SQG D+V + T +F+ VA+TR K
Sbjct 911 TRAKELNLPKAFYTD-RIKTVHESQGISEDHVTLVRLKSTKCDL-FKKFSYCLVAVTRHK 968
Query 570 V 570
V
Sbjct 969 V 969
>sp|P22706|TRAI2_ECOLX Multifunctional conjugation protein TraI
OS=Escherichia coli OX=562 GN=traI PE=3 SV=1
Length=1756
Score = 39.7 bits (91), Expect = 0.096, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 28/140 (20%)
Query 276 KYSTLQGPPGTGKSH------FAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDK 329
+++ +QG G GK+ A+ + R+V +H AV + + +
Sbjct 986 RFTVVQGYAGVGKTTQFRAVMSAVNMLPASERPRVVGLGPTHRAVGEMRSAGVDAQTLAS 1045
Query 330 CSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNA 389
++ T Q P+ + + + DE SM N D++ A
Sbjct 1046 F-----------------LHDTQLQ---QRSGETPDFSNTLFLLDESSMVGNTDMARAYA 1085
Query 390 RL--RAKHYVYIGDPAQLPA 407
+ V GD QL A
Sbjct 1086 LIAAGGGRAVASGDTDQLQA 1105
>sp|Q12039|HMI1_YEAST ATP-dependent DNA helicase HMI1, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
OX=559292 GN=HMI1 PE=1 SV=1
Length=706
Score = 39.3 bits (90), Expect = 0.11, Method: Composition-based stats.
Identities = 34/143 (24%), Positives = 61/143 (43%), Gaps = 14/143 (10%)
Query 445 PAEIVDTVSALVYDNKLKA------HKDKSAQCFKMFYKGVITHDVSSAINRPQ-IGVVR 497
P E+++ V+++ + L +S+ FK + + S N+P I V+
Sbjct 496 PMELLEKVASITNNLNLNPTYFQSLSDAQSSLEFKTHLQEMAQVMKVSKSNKPPGISFVK 555
Query 498 EFLTRNPAWRKAVFISPYNSQNAVASKILG-LPTQTVDSSQGSEYDYVIFTQTTETAHSC 556
FL + VF + SQ A+ + G + T+ S++G E+ V T + +
Sbjct 556 WFLETY-FDQTMVF---HQSQQALQTTGPGTVKLSTIHSAKGLEFPIVFLTNGSMSNFPM 611
Query 557 NVNRFNVAITRAKVGILCIMSDR 579
+ N V ITRA+ L M +
Sbjct 612 DTNALYVGITRARN--LLYMCNM 632
Score = 39.3 bits (90), Expect = 0.11, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 69/189 (37%), Gaps = 28/189 (15%)
Query 365 ETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQ-----LPAPRTLLTK-GTLE 418
+V+ DE ++ + K + GD Q L + ++++ L
Sbjct 201 RNKYKVVLIDEFQDLYPSLAPLITMICKGKQLIMFGDTNQSIYGFLGSNNEIMSQLDNLH 260
Query 419 PEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALV----YDNKLKAHKDKS-AQCFK 473
P+ +V +L R EI+ S ++ + ++ D++ ++ +
Sbjct 261 PKNSTTVLKLFDN----------FRSTPEIISLASKIINRPLAEKQIIDDTDETPSELVR 310
Query 474 MFYKG----VITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKIL--- 526
G ++T D +A + I + + + + + +S NS + IL
Sbjct 311 KLPSGVSPQIMTFDDLAAESEFIIDKITQLICSSAKFSDIAILSRTNSHLTAIASILKKY 370
Query 527 GLPTQTVDS 535
G+P Q + S
Sbjct 371 GIPYQKLKS 379
>sp|P29098|RDRP_PMMVS Replicase large subunit OS=Pepper mild mottle
virus (strain Spain) OX=31745 PE=3 SV=2
Length=1612
Score = 39.7 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 47/305 (15%), Positives = 92/305 (30%), Gaps = 49/305 (16%)
Query 271 KVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKC 330
+ K + + G PG GK+ + + + A + + +A +
Sbjct 824 HISSAKVTLVDGVPGCGKTKEILSRVNFDED---LVLVPGKQAAEMIRRRA------NSS 874
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNAR 390
I+ + V D F +N + DE M ++ +
Sbjct 875 GLIVATKENVRTVDSFLMNY-----------GRGPCQYKRLFLDEGLMLHPGCVNFLVGM 923
Query 391 LRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVD 450
GD Q+P + + P Y + +L T RCPA+I
Sbjct 924 SLCSEAFVYGDTQQIP----YINRVATFP-YPKHLSQLEVDAVETR--RTTLRCPADITF 976
Query 451 TVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAV 510
++ Y+ ++ + +G V + +++P G V F + + +
Sbjct 977 FLNQK-YEGQVMCTSSVTRSVSHEVIQGAA---VMNPVSKPLKGKVITFT---QSDKSLL 1029
Query 511 FISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR---FNVAITR 567
Y TV QG ++ V + T T + V+++R
Sbjct 1030 LSRGYE------------DVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSPHLLVSLSR 1077
Query 568 AKVGI 572
I
Sbjct 1078 HTRSI 1082
>sp|P89657|RDRP_PMMVJ Replicase large subunit OS=Pepper mild mottle
virus (strain Japan) OX=138663 PE=1 SV=1
Length=1612
Score = 39.3 bits (90), Expect = 0.12, Method: Composition-based stats.
Identities = 47/305 (15%), Positives = 92/305 (30%), Gaps = 49/305 (16%)
Query 271 KVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKC 330
+ K + + G PG GK+ + + + A + + +A +
Sbjct 824 HISSAKVTLVDGVPGCGKTKEILSRVNFDED---LVLVPGKQAAEMIRRRA------NSS 874
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNAR 390
I+ + V D F +N + DE M ++ +
Sbjct 875 GLIVATKENVRTVDSFLMNY-----------GRGPCQYKRLFLDEGLMLHPGCVNFLVGM 923
Query 391 LRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVD 450
GD Q+P + + P Y + +L T RCPA+I
Sbjct 924 SLCSEAFVYGDTQQIP----YINRVATFP-YPKHLSQLEVDAVETR--RTTLRCPADITF 976
Query 451 TVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAV 510
++ Y+ ++ + +G V + +++P G V F + + +
Sbjct 977 FLNQK-YEGQVMCTSSVTRSVSHEVIQGAA---VMNPVSKPLKGKVITFT---QSDKSLL 1029
Query 511 FISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR---FNVAITR 567
Y TV QG ++ V + T T + V+++R
Sbjct 1030 LSRGYE------------DVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSPHLLVSLSR 1077
Query 568 AKVGI 572
I
Sbjct 1078 HTRSI 1082
>sp|P13887|POLN_RRVN Polyprotein P1234 OS=Ross river virus (strain
NB5092) OX=11031 PE=3 SV=2
Length=2480
Score = 39.3 bits (90), Expect = 0.13, Method: Composition-based stats.
Identities = 42/254 (17%), Positives = 73/254 (29%), Gaps = 65/254 (26%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS + R + + + K +D +R + +
Sbjct 717 VFGVPGSGKSAIIKSVVTT----RDLVASGKKENCQEIVNDVKKQRGLDVTARTVDSILL 772
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
C + + DE + L + A ++ +
Sbjct 773 NGC----------------------RRGVENLYVDEAFACHSGTLLALIAMVKPTGKVIL 810
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K + + RRC I VS L Y
Sbjct 811 CGDPKQCGFFNLMQLKVNFNHD----------ICTQVLHKSISRRCTLPITAIVSTLHYQ 860
Query 459 NKLK-------------------AHKDKSAQCFKMFYKGVI----THDVSSA-----INR 490
K++ A D CF+ + K + H+V +A + R
Sbjct 861 GKMRTTNLCSAPIQIDTTGTTKPAKGDIVLTCFRXWVKQLQIDYRGHEVMTAAASQGLTR 920
Query 491 PQIGVVREFLTRNP 504
+ VR+ + NP
Sbjct 921 KGVYAVRQKVNENP 934
>sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog
OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3
Length=2021
Score = 39.3 bits (90), Expect = 0.13, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 42/114 (37%), Gaps = 13/114 (11%)
Query 278 STLQGPPGTGKSHFA----IGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRI 333
+ + P G GK+ A ++PS ++V+ A + V E + I + S +
Sbjct 95 TLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVMGIPQ-SHM 153
Query 334 IPARARVECFDKFKVNSTLEQYVFC--------TVNALPETTADIVVFDEISMA 379
+ ++ ++ S+ T A+P T +V DE A
Sbjct 154 AEMTGSTQAVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPATHVKCLVVDEAHKA 207
>sp|J8HQ06|GAJB_BACC6 Gabija protein GajB OS=Bacillus cereus (strain
VD045) OX=1053225 GN=gajB PE=1 SV=1
Length=494
Score = 38.9 bits (89), Expect = 0.14, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (53%), Gaps = 1/70 (1%)
Query 529 PTQTVDSSQGSEYDYVIFTQTTETAH-SCNVNRFNVAITRAKVGILCIMSDRDLYDKLQF 587
TV S++G E++ VI T + H + + N VA TRAK ++ IM ++ D ++
Sbjct 421 KIFTVHSAKGLEFNQVIITASDYNVHYNRDTNEHYVATTRAKDKLIVIMDNKKYSDYIET 480
Query 588 TSLEIPRRNV 597
E+ +N+
Sbjct 481 LMKELKIKNI 490
>sp|Q9YKD6|RDRP_TOMS1 Replicase large subunit OS=Tomato mosaic
virus (strain S-1) OX=138314 PE=3 SV=1
Length=1616
Score = 38.9 bits (89), Expect = 0.16, Method: Composition-based stats.
Identities = 46/309 (15%), Positives = 91/309 (29%), Gaps = 56/309 (18%)
Query 271 KVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKC 330
V K + G PG GK+ + + + A + + +A +
Sbjct 822 HVSSAKVVLVDGVPGCGKTKEILSRVNFEED---LILVPGRQAAEMIRRRA------NAS 872
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISM----ATNYDLSV 386
I+ + V D F + DE M N+ + +
Sbjct 873 GIIVATKDNVRTVDSF----------LMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEM 922
Query 387 VNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPA 446
+ + VY GD Q+P + + + + L RCPA
Sbjct 923 SLSDIAY---VY-GDTQQIP---YINRVTGFPYPAHFAKLEVDEVETRRTTL----RCPA 971
Query 447 EIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAW 506
++ ++ Y+ + + + G + + +++P G + F +
Sbjct 972 DVTHFLNQR-YEGHVMCTSSEKKSVSQEMVSGAASIN---PVSKPLKGKILTFT---QSD 1024
Query 507 RKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVN---RFNV 563
++A+ Y TV QG Y V + T T S V
Sbjct 1025 KEALLSRGYT------------DVHTVHEVQGETYADVSLVRLTPTPVSIIARDSPHVLV 1072
Query 564 AITRAKVGI 572
+++R +
Sbjct 1073 SLSRHTKSL 1081
>sp|P89202|RDRP_SHMV Replicase large subunit OS=Sunn-hemp mosaic
virus OX=12240 PE=2 SV=2
Length=1629
Score = 38.9 bits (89), Expect = 0.16, Method: Composition-based stats.
Identities = 49/314 (16%), Positives = 103/314 (33%), Gaps = 58/314 (18%)
Query 263 SSNVANYQKVGMQK----YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALC 318
S + + + +K + + G PG GK+ L+ + ++ ++ A C
Sbjct 826 VSMLGYLRHLDQKKPTATITLVDGVPGCGKTQEI--LSRFDANSDLILVQGREA-----C 878
Query 319 EKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISM 378
E + + R FD F +N + DE M
Sbjct 879 EMIRRRANDNVPGSATKENVRT--FDSFVMNRKP-------------GKFKTLWVDEGLM 923
Query 379 ATNYDLS-VVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMF 437
++ +N + Y++ GD Q+P ++ F+ L K ++
Sbjct 924 VHPGLINFCINISCVSSVYIF-GDRKQIPFINRVMN--------FSIPDNLAKLYYDEIV 974
Query 438 LG-TCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVV 496
T +RCP ++ +++ VY+ ++ ++ + G + +I
Sbjct 975 SRDTTKRCPLDVTHFLNS-VYEKRVMSYSNVQRSLECKMISGKAKINDYRSILAEG---- 1029
Query 497 REFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSC 556
+ LT ++ + + + TV +QG Y V + T T +
Sbjct 1030 -KLLTFTQEDKEYLLKAGFK------------DVNTVHEAQGETYRDVNLIRVTATPLTI 1076
Query 557 NVN---RFNVAITR 567
VA++R
Sbjct 1077 VSAGSPHVTVALSR 1090
>sp|O90370|POLN_ONNVI Polyprotein P1234 OS=O'nyong-nyong virus
(strain Igbo Ora) OX=79899 PE=3 SV=1
Length=2513
Score = 38.9 bits (89), Expect = 0.18, Method: Composition-based stats.
Identities = 48/298 (16%), Positives = 89/298 (30%), Gaps = 63/298 (21%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS L + T+ + ++ ++ +R + +
Sbjct 719 VFGVPGSGKSAIIKNLVTRQD----LVTSGKKENCQEISNDVMRQRKLEISARTVDSLLL 774
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
C +++ DE + L + A +R + V
Sbjct 775 NGCN----------------------KPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVL 812
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K V RRC + VS+L Y+
Sbjct 813 CGDPKQCGFFNMMQMK----------VNYNHNICTQVYHKSISRRCTLPVTAIVSSLHYE 862
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
+K++ + + ++ +P+ G LT W K + I Y
Sbjct 863 SKMRTTNEYNQPI----------VVDTTGTTKPEPG--DLVLTCFRGWVKQLQID-YR-- 907
Query 519 NAVASKILGLPTQTVDSSQGSEYDYVIFTQ---TTETAHSCNVNRFNVAITRAKVGIL 573
G T +SQG V + ++ NV +TR + ++
Sbjct 908 --------GNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGKLI 957
>sp|Q83270|1A_CMVII Replication protein 1a OS=Cucumber mosaic
virus (strain Iizuka) OX=117113 GN=ORF1a PE=3 SV=1
Length=993
Score = 38.5 bits (88), Expect = 0.20, Method: Composition-based stats.
Identities = 59/301 (20%), Positives = 106/301 (35%), Gaps = 45/301 (15%)
Query 277 YSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
S + G G GK+ +++ PS ++ TA +A D + C+ +
Sbjct 709 ISQVDGVAGCGKTTAI--KSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFV--- 763
Query 337 RARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHY 396
T + + N P + V+ DE+ + L V ++L+A
Sbjct 764 -------------RTADSVLL---NECPTVSR--VLVDEVVLLHFGQLCAVMSKLKAVRA 805
Query 397 VYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALV 456
+ GD Q + + + + +++ D T R P ++V V +
Sbjct 806 ICFGDSEQ-------IAFSSRDASFDMRFSKIIPDETSDA--DTTFRSPQDVVPLVRLMA 856
Query 457 YDNKLKAHKDKSAQCFKMFYKGVITHDVSS----AINRPQIGVVREFLTRNPAWRKAVFI 512
K S K + +T V+S ++ + R ++T A + A I
Sbjct 857 --TKALPKGTHSKYT-KWVSQSKVTRSVTSRAIVSVTLVDLDSSRFYITMTQADK-ASLI 912
Query 513 SPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFN---VAITRAK 569
S N + +TV SQG D+V + T +F+ VA+TR K
Sbjct 913 SRAKEMN-LPKTFWNERIKTVHESQGISEDHVTLVRLKSTKCDL-FKQFSYCLVALTRHK 970
Query 570 V 570
V
Sbjct 971 V 971
>sp|A0A0S2T050|RDRP_TBRFV Replicase large subunit OS=Tomato brown
rugose fruit virus (isolate TOBRFV/Tomato/Jordan/Tom1-Jo/2015)
OX=2654645 PE=3 SV=1
Length=1615
Score = 38.5 bits (88), Expect = 0.20, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 107/344 (31%), Gaps = 65/344 (19%)
Query 271 KVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKC 330
V K + G PG GK+ + + + A + + +A +
Sbjct 822 HVSSAKVVLVDGVPGCGKTKEILSKVNFEED---LILVPGKQAAEMIKRRA------NAS 872
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISM----ATNYDLSV 386
I R V D F +N Y T + DE M N+ +S+
Sbjct 873 GIIQATRDNVRTVDSFIMN-----YGKGT-----RCQFKRLFIDEGLMLHTGCVNFLVSM 922
Query 387 VNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPA 446
+ VY GD Q+P + + + + L RCPA
Sbjct 923 SLCEIAY---VY-GDTQQIP---YINRVSGFPYPAHFAKIEVDEVETRRTTL----RCPA 971
Query 447 EIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAW 506
+I ++ Y+ + + G + +++P G V F +
Sbjct 972 DITHYLNRR-YEGYVMCTSSVKKSVSQEMVSGAAMIN---PVSKPLNGKVLTFT---QSD 1024
Query 507 RKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSC---NVNRFNV 563
++A+ Y TV QG Y V + T T S + V
Sbjct 1025 KEALLSRGYT------------DVHTVHEVQGETYADVSLVRLTPTPVSIIAGDSPHVLV 1072
Query 564 AITRAKVGI---LCIMSD-----RDLYDKLQFTSLEIPRRNVAT 599
A++R + +M RDL +KL L++ + + T
Sbjct 1073 ALSRHTQTLKYYTVVMDPLVSIIRDL-EKLSSYLLDMYKVDAGT 1115
>sp|Q8RY16|PEX6_ARATH Peroxisomal ATPase PEX6 OS=Arabidopsis thaliana
OX=3702 GN=PEX6 PE=1 SV=1
Length=941
Score = 38.5 bits (88), Expect = 0.20, Method: Composition-based stats.
Identities = 47/283 (17%), Positives = 93/283 (33%), Gaps = 46/283 (16%)
Query 273 GMQKYSTLQ--GPPGTGK--------SHFAIG-LALYYPSARIVYTACSHAAVDALCEKA 321
G++K S + GPPGTGK + ++ L++ P +Y S V + EKA
Sbjct 687 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFEKA 746
Query 322 LKYLP----IDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEIS 377
P D+ + P AR D V + + ++ L +++ D+ + S
Sbjct 747 RSARPCVIFFDELDSLAP--ARGASGDSGGVMDRVVSQMLAEIDGLSDSSQDLFIIG-AS 803
Query 378 MATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMF 437
+ + R +Y+G + + ++ R K
Sbjct 804 NRPDLIDPALLRPGRFDKLLYVG----------VNADASYRERVLKALTRKFKLSEDVSL 853
Query 438 LGTCRRCPAEIVDT-VSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVV 496
++CP+ + AL D +A K K ++ G + + + +
Sbjct 854 YSVAKKCPSTFTGADMYALCADAWFQAAKRKVSKSD----SGDMPTEEDDPDSV--VVEY 907
Query 497 REFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 539
+F+ ++ I+ + D QG
Sbjct 908 VDFIKAMDQLSPSLSITELKKYEMLR-----------DQFQGR 939
>sp|P13886|POLN_ONNVG Polyprotein P1234 OS=O'nyong-nyong virus
(strain Gulu) OX=11028 PE=3 SV=2
Length=2514
Score = 38.5 bits (88), Expect = 0.21, Method: Composition-based stats.
Identities = 49/292 (17%), Positives = 87/292 (30%), Gaps = 63/292 (22%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS L + T+ + ++ ++ +R + +
Sbjct 719 VFGVPGSGKSAIIKNLVTRQD----LVTSGKKENCQEISNDVMRQRKLEISARTVDSLLL 774
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
C +++ DE + L + A +R + V
Sbjct 775 NGCN----------------------KPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVL 812
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K V RRC + VS+L Y+
Sbjct 813 CGDPKQCGFFNMMQMK----------VNYNHNICTQVYHKSISRRCTLPVTAIVSSLHYE 862
Query 459 NKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQ 518
+K++ + + ++ I +P+ G LT W K + I Y
Sbjct 863 SKMRTTNEYNQPI----------VVDTTGITKPEPG--DLVLTCFRGWVKQLQID-YR-- 907
Query 519 NAVASKILGLPTQTVDSSQGSEYDYVIFTQ---TTETAHSCNVNRFNVAITR 567
G T +SQG V + ++ NV +TR
Sbjct 908 --------GNEVMTAAASQGLTRKGVYAVRQKVNENPLYAPTSEHVNVLLTR 951
>sp|P14565|TRAI1_ECOLI Multifunctional conjugation protein TraI
OS=Escherichia coli (strain K12) OX=83333 GN=traI PE=1 SV=2
Length=1756
Score = 38.5 bits (88), Expect = 0.24, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 28/140 (20%)
Query 276 KYSTLQGPPGTGKSH------FAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDK 329
+++ +QG G GK+ A+ + R+V +H AV + + +
Sbjct 986 RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLAS 1045
Query 330 CSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNA 389
++ T Q P+ + + + DE SM N D++ A
Sbjct 1046 F-----------------LHDTQLQ---QRSGETPDFSNTLFLLDESSMVGNTDMARAYA 1085
Query 390 RL--RAKHYVYIGDPAQLPA 407
+ V GD QL A
Sbjct 1086 LIAAGGGRAVASGDTDQLQA 1105
>sp|P46343|PHOL_BACSU PhoH-like protein OS=Bacillus subtilis (strain
168) OX=224308 GN=phoH PE=3 SV=3
Length=319
Score = 37.7 bits (86), Expect = 0.28, Method: Composition-based stats.
Identities = 29/148 (20%), Positives = 52/148 (35%), Gaps = 19/148 (13%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSA----RIVYTACSHAAVDALCEKALKYLPIDKCS 331
GP GTGK++ A+ A++ +I+ T + A ++L +LP D
Sbjct 131 DLVFGIGPAGTGKTYLAVVKAVHALKNGHIKKIILTRPAVEAGESL-----GFLPGDLKE 185
Query 332 RIIPARARVE--CFDKFKVNSTLEQYVFCTVNALP-------ETTADIVVFDEISMATNY 382
++ P + D + T + P V+ DE T
Sbjct 186 KVDPYLRPLYDALHDVLGADHTERLMERGIIEIAPLAYMRGRTLDDAYVILDEAQNTTPA 245
Query 383 DLSVVNARLRA-KHYVYIGDPAQLPAPR 409
+ + RL + GD +Q+ P+
Sbjct 246 QMKMFLTRLGFGSKMIITGDVSQIDLPK 273
>sp|Q0W257|PAN_METAR Proteasome-activating nucleotidase OS=Methanocella
arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
OX=351160 GN=pan PE=3 SV=1
Length=417
Score = 37.7 bits (86), Expect = 0.29, Method: Composition-based stats.
Identities = 48/198 (24%), Positives = 79/198 (40%), Gaps = 34/198 (17%)
Query 115 TNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATV--REVLSDRELH-LSWEVGK 171
++ Y+L +R+K ++ EE K+ +V ++V +RE+ L+ E+ +
Sbjct 21 SDFSKYLL-----DRVKQLEERNVRLKEEYRKIELEKKSVENKKVQYEREIRKLTSELDR 75
Query 172 PR-PPLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSH 230
+ PPL V T V N K+ I T K + Y G L
Sbjct 76 LKTPPL---IVGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVY---PGAKVALNQQ 129
Query 231 TVM------PLSAPTLV-------PQEHYVRITGLYPTLNISDEFSSNV----ANYQKVG 273
++ + P+++ P+ Y I GL +N E +QKVG
Sbjct 130 SLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVG 189
Query 274 MQ--KYSTLQGPPGTGKS 289
++ K L GPPGTGK+
Sbjct 190 IEPPKGVLLYGPPGTGKT 207
>sp|P33424|POLN_HEVPA Non-structural polyprotein pORF1 OS=Hepatitis
E virus genotype 1 (isolate Human/Pakistan/Sar-55) OX=33774
GN=ORF1 PE=1 SV=2
Length=1693
Score = 37.7 bits (86), Expect = 0.35, Method: Composition-based stats.
Identities = 49/305 (16%), Positives = 84/305 (28%), Gaps = 88/305 (29%)
Query 273 GMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSR 332
G+ +Y G PG+GKS + V + +A + +R
Sbjct 966 GVVQYQFTAGVPGSGKSRSITQADVD------VVVVPTRELRNAWRRRGFAAFTPHTAAR 1019
Query 333 IIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLR 392
+ R VV DE + L + R
Sbjct 1020 VTQGRR--------------------------------VVIDEAPSLPPHLLLLHMQRAA 1047
Query 393 AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTV 452
H +GDP Q+PA ++ E+ V + + P + RCPA++ + +
Sbjct 1048 TVH--LLGDPNQIPA---------IDFEHAGLVPAIRPDLAPTSWWHVTHRCPADVCELI 1096
Query 453 SALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFI 512
+++ + + G P +G F A
Sbjct 1097 RGAY------PMIQTTSRVLRSLFWGE-----------PAVGQKLVFTQAAKAANPGSV- 1138
Query 513 SPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR--FNVAITRAKV 570
TV +QG+ Y T + +R VA+TR
Sbjct 1139 -------------------TVHEAQGATYTETTIIATADARGLIQSSRAHAIVALTRHTE 1179
Query 571 GILCI 575
+ I
Sbjct 1180 KCVII 1184
>sp|Q81862|POLN_HEVCH Non-structural polyprotein pORF1 OS=Hepatitis
E virus genotype 1 (isolate Human/China/HeBei/1987) OX=652674
GN=ORF1 PE=1 SV=1
Length=1693
Score = 37.7 bits (86), Expect = 0.35, Method: Composition-based stats.
Identities = 49/305 (16%), Positives = 84/305 (28%), Gaps = 88/305 (29%)
Query 273 GMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSR 332
G+ +Y G PG+GKS + V + +A + +R
Sbjct 966 GVVQYQFTAGVPGSGKSRSITQADVD------VVVVPTRELRNAWRRRGFAAFTPHTAAR 1019
Query 333 IIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLR 392
+ R VV DE + L + R
Sbjct 1020 VTQGRR--------------------------------VVIDEAPSLPPHLLLLHMQRAA 1047
Query 393 AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTV 452
H +GDP Q+PA ++ E+ V + + P + RCPA++ + +
Sbjct 1048 TVH--LLGDPNQIPA---------IDFEHAGLVPAIRPDLAPTSWWHVTHRCPADVCELI 1096
Query 453 SALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFI 512
+++ + + G P +G F A
Sbjct 1097 RGAY------PMIQTTSRVLRSLFWGE-----------PAVGQKLVFTQAAKAANPGSV- 1138
Query 513 SPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR--FNVAITRAKV 570
TV +QG+ Y T + +R VA+TR
Sbjct 1139 -------------------TVHEAQGATYTETTIIATADARGLIQSSRAHAIVALTRHTE 1179
Query 571 GILCI 575
+ I
Sbjct 1180 KCVII 1184
>sp|Q9LJJ5|AATPB_ARATH AAA-ATPase At3g28610 OS=Arabidopsis thaliana
OX=3702 GN=At3g28610 PE=2 SV=1
Length=474
Score = 37.4 bits (85), Expect = 0.36, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (5%)
Query 256 LNISDEFSSNVANYQKVGM--QKYSTLQGPPGTGKSHFAIGLA 296
LN F++ Y+K+G ++ L GPPGTGKS +A
Sbjct 216 LNDLAAFNNGKDYYKKIGKAWKRGYLLYGPPGTGKSTMIAAMA 258
>sp|Q74M79|RGYRB_NANEQ Reverse gyrse subunit B OS=Nanoarchaeum
equitans (strain Kin4-M) OX=228908 GN=rgyB PE=1 SV=1
Length=575
Score = 37.7 bits (86), Expect = 0.36, Method: Composition-based stats.
Identities = 24/110 (22%), Positives = 39/110 (35%), Gaps = 12/110 (11%)
Query 279 TLQGPPGTGKSHFAIGLALY--YPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPA 336
++ P G GK+ FA+ ALY ++ + V L EK + II A
Sbjct 97 SIIAPTGMGKTTFALVNALYWGKKGKKVYIIVPTRTLVKQLYEKINVFAERVGFDNIIVA 156
Query 337 RARVECFDK----------FKVNSTLEQYVFCTVNALPETTADIVVFDEI 376
K F + T Q++ + L DI+ D++
Sbjct 157 YYGNNKQKKEAKELIKDGAFSILITSNQFLSRNFDLLKNNYFDIIFADDV 206
>sp|Q67704|RDRP_GVAIS RNA replication protein OS=Grapevine virus
A (isolate Is 151) OX=651358 GN=ORF1 PE=3 SV=1
Length=1707
Score = 37.7 bits (86), Expect = 0.36, Method: Composition-based stats.
Identities = 31/175 (18%), Positives = 57/175 (33%), Gaps = 36/175 (21%)
Query 275 QKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRII 334
++ T G G+GKSH+ + + +++ + D K K R++
Sbjct 920 KEVLTAFGFAGSGKSHWCQTILKHCSVEKVLVISPRKVLRDDWVAKISKKH------RVV 973
Query 335 PARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK 394
V D + +V DEI + + +V A + +
Sbjct 974 TFE--VAFMDDYGCKD--------------------IVIDEIGLLPPGYIDLVIAAHQPR 1011
Query 395 HYVYIGDPAQ--LPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAE 447
V +GDP Q + R + + + FN V + +L R P
Sbjct 1012 TLVLLGDPLQSTYHSKRDNVVLEASQEDVFNRVRGKLP------YLCYSHRLPRN 1060
>sp|Q975P6|RGYR2_SULTO Reverse gyrase 2 OS=Sulfurisphaera tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063
GN=rgy2 PE=3 SV=2
Length=1233
Score = 37.7 bits (86), Expect = 0.36, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query 280 LQGPPGTGKSHFAIGLALYYPSA--RIVYTACSHAAV-DALCEKALKYLPIDKCSRIIPA 336
+ PPG GK+ F I +LY+ S R + + + V A+ ++ + ++++
Sbjct 104 IIAPPGLGKTTFGIITSLYFSSKNFRSILIFPTRSLVKQAVDRISMYSNKTNIETKLLYY 163
Query 337 RARVECFDK---FKVNSTLEQYVFCT--------VNALPETTADIVVFDEISMA 379
+ + K +K + + +F +N L D + D++ A
Sbjct 164 HSGINESQKQELYKALNAGDFNIFIATNRFFIDKINELKNIKYDFMFVDDVDTA 217
>sp|A7HZ97|PNP_PARL1 Polyribonucleotide nucleotidyltransferase
OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 /
NCIMB 13966) OX=402881 GN=pnp PE=3 SV=1
Length=728
Score = 37.7 bits (86), Expect = 0.37, Method: Composition-based stats.
Identities = 44/218 (20%), Positives = 72/218 (33%), Gaps = 19/218 (9%)
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNAR 390
SR+I R FK N T + + E DIV +S A
Sbjct 92 SRLIDRPIRPLFIKGFK-NETQVIATVVSHDM--ENDPDIVAMIAVSAALTISGLPFLGP 148
Query 391 LRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLM------KTIGPDMFLGTCRRC 444
+ A YIG +L + + L+ + +M K + D+ LG
Sbjct 149 IGAARVGYIGGEYKLNPMIDEMPESALDLVVAGTADAVMMVESEAKELSEDIMLGAVMFG 208
Query 445 PAE-------IVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVR 497
E I+ + + KD S K+ + + DV +A G
Sbjct 209 HKEFQPVIDMIIRMAEKCAKEPRAIDVKDNSELVAKV--RELAESDVRAAYGLKDKGQRH 266
Query 498 EFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDS 535
E L K+ +P NAV+ +G ++++S
Sbjct 267 EALAAAKDKVKSALCNP-EDPNAVSETDVGGVFKSIES 303
>sp|A5GHU1|UVRB_SYNPW UvrABC system protein B OS=Synechococcus
sp. (strain WH7803) OX=32051 GN=uvrB PE=3 SV=1
Length=678
Score = 37.4 bits (85), Expect = 0.39, Method: Composition-based stats.
Identities = 47/291 (16%), Positives = 95/291 (33%), Gaps = 17/291 (6%)
Query 275 QKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRII 334
++Y TL G GTGK+ F + + + A + LC + ++ P + I
Sbjct 31 ERYQTLLGATGTGKT-FTMANVIAQTGRPALVLAHNKTLAAQLCNELREFFPNNAVEYFI 89
Query 335 PARARVECFDKFKVNSTLEQYVFCTVNALP--ETTADIVVFDEISMATNYDLSVVNARLR 392
+ V+ T + +A +F+ + +S +
Sbjct 90 SYYDYYQPEAYVPVSDTYIAKTASINEEIDMLRHSATRSLFERRDVIVVASISCIYGLGI 149
Query 393 AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTV 452
Y+ + TL +G L N R I F R ++++
Sbjct 150 PSEYLKAA--VKFEVGETLNIRGQLRELVNNQYSRNDTEIARGRF-----RMKGDVLEIG 202
Query 453 SALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFI 512
A Y+++L + + + Y T ++ ++ I + F+T P R +
Sbjct 203 PA--YEDRLVRVELFGDEVEAIRYVDPTTGEILQSLESINIYPAKHFVT--PKDRLDTAV 258
Query 513 SPYNSQNAVASKILGLPTQTVDSS---QGSEYDYVIFTQTTETAHSCNVNR 560
S+ L + +++ Q ++YD + Q N R
Sbjct 259 QAIRSELTERLDFLNTEGKLLEAQRLEQRTKYDLEMLGQVGYCNGVENYAR 309
>sp|Q97ZZ8|RGYR1_SACS2 Reverse gyrase 1 OS=Saccharolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057
GN=rgy1 PE=1 SV=1
Length=1242
Score = 37.4 bits (85), Expect = 0.45, Method: Composition-based stats.
Identities = 23/144 (16%), Positives = 52/144 (36%), Gaps = 22/144 (15%)
Query 258 ISDEFSSNVANYQKVGMQKYSTL----------QGPPGTGKSHF--AIGLALYYPSARIV 305
+ + F + N + +G Q+ T+ PPG GK+ F + L + + +
Sbjct 76 VEEIFGKLLNNSKPIGPQRSWTIRFLRGESFAIIAPPGLGKTTFGLIMSLYNATRNRKSI 135
Query 306 YTACSHAAVDALCEKALKYLPI-DKCSRIIPARAR----VECFDKFKVNS-----TLEQY 355
+ + +K K+ + RI+ + D+ K + + ++
Sbjct 136 IIFPTRTLISQTVDKLAKFSELYSYSPRILYNKQSPTQTENILDQLKSGNFDIFISTNRF 195
Query 356 VFCTVNALPETTADIVVFDEISMA 379
V ++ L D + D++ A
Sbjct 196 VIQNLSELSNIKFDFIFVDDVDAA 219
>sp|Q9YLR1|POLN_HEVUS Non-structural polyprotein pORF1 OS=Hepatitis
E virus genotype 3 (isolate Human/United States/US2) OX=509615
GN=ORF1 PE=3 SV=1
Length=1708
Score = 37.4 bits (85), Expect = 0.48, Method: Composition-based stats.
Identities = 38/210 (18%), Positives = 66/210 (31%), Gaps = 52/210 (25%)
Query 371 VVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMK 430
VV DE + L + R + H +GDP Q+PA ++ E+ V +
Sbjct 1041 VVIDEAPSLPPHLLLLHMQRASSVH--LLGDPNQIPA---------IDFEHAGLVPAIRP 1089
Query 431 TIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINR 490
+ P + RCPA++ + + +++ + + N
Sbjct 1090 ELAPTSWWHVTHRCPADVCELIRGAY------PKIQTTSRVLRSLF-----------WNE 1132
Query 491 PQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTT 550
P IG F A TV +QG+ + T
Sbjct 1133 PAIGQKLVFTQAAKAANPGAI--------------------TVHEAQGATFTETTIIATA 1172
Query 551 ETAHSCNVNR--FNVAITRAKVGILCIMSD 578
+ +R VA+TR C++ D
Sbjct 1173 DARGLIQSSRAHAIVALTRHTEK--CVILD 1200
>sp|Q6J8G2|POLN_HEVMG Non-structural polyprotein pORF1 OS=Hepatitis
E virus genotype 3 (isolate Swine/United States/swUS1)
OX=512345 GN=ORF1 PE=3 SV=1
Length=1708
Score = 37.4 bits (85), Expect = 0.48, Method: Composition-based stats.
Identities = 38/210 (18%), Positives = 66/210 (31%), Gaps = 52/210 (25%)
Query 371 VVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMK 430
VV DE + L + R + H +GDP Q+PA ++ E+ V +
Sbjct 1041 VVIDEAPSLPPHLLLLHMQRASSVH--LLGDPNQIPA---------IDFEHAGLVPAIRP 1089
Query 431 TIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINR 490
+ P + RCPA++ + + +++ + + N
Sbjct 1090 ELAPTSWWHVTHRCPADVCELIRGAY------PKIQTTSRVLRSLF-----------WNE 1132
Query 491 PQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTT 550
P IG F A TV +QG+ + T
Sbjct 1133 PAIGQKLVFTQAAKAANPGAI--------------------TVHEAQGATFTETTIIATA 1172
Query 551 ETAHSCNVNR--FNVAITRAKVGILCIMSD 578
+ +R VA+TR C++ D
Sbjct 1173 DARGLIQSSRAHAIVALTRHTEK--CVILD 1200
>sp|F4KFX5|AATPJ_ARATH AAA-ATPase At5g40000 OS=Arabidopsis thaliana
OX=3702 GN=At5g40000 PE=3 SV=1
Length=470
Score = 37.0 bits (84), Expect = 0.51, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (56%), Gaps = 2/34 (6%)
Query 261 EFSSNVANYQKVGM--QKYSTLQGPPGTGKSHFA 292
FS+ Y+K+G ++ L GPPGTGKS
Sbjct 225 AFSNGKEYYKKIGKAWKRGYLLYGPPGTGKSTMI 258
>sp|Q9YQ08|RDRP_TMVB Replicase large subunit OS=Tobacco mosaic
virus (strain B935A) OX=138309 PE=3 SV=1
Length=1616
Score = 37.4 bits (85), Expect = 0.52, Method: Composition-based stats.
Identities = 47/305 (15%), Positives = 92/305 (30%), Gaps = 48/305 (16%)
Query 271 KVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKC 330
V K + G PG GK+ + + + A + + +A +
Sbjct 822 HVSSAKVVLVDGVPGCGKTKEILSRVNFDED---LILVPGKQAAEMIRRRA------NSS 872
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNAR 390
I+ + V+ D F +N + DE M ++ + A
Sbjct 873 GIIVATKDNVKTVDSFMMNFGKST----------RCQFKRLFIDEGLMLHTGCVNFLVAM 922
Query 391 LRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVD 450
+ GD Q+P + + + + L RCPA++
Sbjct 923 SLCEIAYVYGDTQQIP---YINRVSGFPYPAHFAKLEVDEVETRRTTL----RCPADVTH 975
Query 451 TVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAV 510
++ Y+ + + + G + I++P G + F + ++A+
Sbjct 976 YLNRR-YEGFVMSTSSVKKSVSQEMVGGAAVIN---PISKPSHGKILTFT---QSDKEAL 1028
Query 511 FISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSC---NVNRFNVAITR 567
Y+ TV QG Y V + T T S + VA++R
Sbjct 1029 LSRGYS------------DVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSPHVLVALSR 1076
Query 568 AKVGI 572
+
Sbjct 1077 HTCSL 1081
>sp|Q5Y389|POLN_GETV Polyprotein P1234 OS=Getah virus OX=59300
PE=1 SV=3
Length=2467
Score = 37.0 bits (84), Expect = 0.61, Method: Composition-based stats.
Identities = 44/254 (17%), Positives = 76/254 (30%), Gaps = 65/254 (26%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS + R + + + + +D +R + +
Sbjct 718 VFGVPGSGKSAIIKNMVTT----RDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILL 773
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
C + + + DE + L + A +R V
Sbjct 774 NGC----------------------KKGVENLYVDEAFACHSGTLLALIALVRPSGKVVL 811
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K N R++ RRC + VS L Y
Sbjct 812 CGDPKQCGFFNLMQLKVHY---NHNICTRVLHK-------SISRRCTLPVTAIVSTLHYQ 861
Query 459 NKLK-------------------AHKDKSAQCFKMFYKGVI----THDVSSA-----INR 490
K++ A D CF+ + K + H+V +A + R
Sbjct 862 GKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTR 921
Query 491 PQIGVVREFLTRNP 504
+ VR+ + NP
Sbjct 922 KGVYAVRQKVNENP 935
>sp|Q8DHC6|UVRB_THEVB UvrABC system protein B OS=Thermosynechococcus
vestitus (strain NIES-2133 / IAM M-273 / BP-1) OX=197221
GN=uvrB PE=3 SV=1
Length=668
Score = 37.0 bits (84), Expect = 0.65, Method: Composition-based stats.
Identities = 52/312 (17%), Positives = 101/312 (32%), Gaps = 19/312 (6%)
Query 254 PTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAA 313
PT + VA Q ++ TL G GTGK+H I + + A +
Sbjct 14 PTGDQPQAIQKLVAGVQ--AGHRFQTLLGATGTGKTH-TIARVIEALGRPTLVLAHNKTL 70
Query 314 VDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALP--ETTADIV 371
LC + + P + I + V T + + +A
Sbjct 71 AAQLCNELRSFFPENAVEYFISYYDYYQPEAYIPVTDTYIEKSASINEEIDMLRHSATRS 130
Query 372 VFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKT 431
+F+ + +S + Y+ P ++ L + L R
Sbjct 131 LFERRDVIVVASISCIYGLGIPAEYLKAAIPLEVGRETEL--RQLLRQLATIQYTRNDVE 188
Query 432 IGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRP 491
+G F R ++++ A Y++++ + + + Y +T + ++ R
Sbjct 189 LGRGRF-----RVRGDVLEIGPA--YEDRIIRVEFFGDEIEAIRYVDPLTGETLQSVERL 241
Query 492 QIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDS---SQGSEYDYVIFTQ 548
I + F+T A Q VA+ L + +++ SQ + YD + Q
Sbjct 242 NIYPAKHFVTPAERLEAACVAIEAELQAQVAN--LEAQNKLLEAQRLSQRTRYDLEMLRQ 299
Query 549 TTETAHSCNVNR 560
N +R
Sbjct 300 VGYCNGVENYSR 311
>sp|Q9FLD5|ASD_ARATH AAA-ATPase ASD, mitochondrial OS=Arabidopsis
thaliana OX=3702 GN=AATP1 PE=1 SV=1
Length=514
Score = 36.6 bits (83), Expect = 0.72, Method: Composition-based stats.
Identities = 15/37 (41%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query 262 FSSNVANYQKVGM--QKYSTLQGPPGTGKSHFAIGLA 296
FS++ Y+K+G ++ L GPPGTGKS +A
Sbjct 228 FSNSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMA 264
>sp|P9WIA3|PHOL_MYCTU PhoH-like protein OS=Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv) OX=83332 GN=Rv2368c PE=1
SV=1
Length=352
Score = 36.2 bits (82), Expect = 0.75, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 48/155 (31%), Gaps = 19/155 (12%)
Query 268 NYQKVGMQKYSTLQGPPGTGKSHFAIGLAL----YYPSARIVYTACSHAAVDALCEKALK 323
+ GP GTGK++ A+ A+ RI+ T + A + L
Sbjct 136 YVDAIDANTIVFGIGPAGTGKTYLAMAKAVHALQTKQVTRIILTRPAVEAGERL-----G 190
Query 324 YLPIDKCSRIIPARARVE--CFDKFKVNSTLEQYVFCTVNALP-------ETTADIVVFD 374
+LP +I P + +D + + P +V D
Sbjct 191 FLPGTLSEKIDPYLRPLYDALYDMMDPELIPKLMSAGVIEVAPLAYMRGRTLNDAFIVLD 250
Query 375 EISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAP 408
E T + + RL V GD Q+ P
Sbjct 251 EAQNTTAEQMKMFLTRLGFGSKVVVTGDVTQIDLP 285
>sp|P9WIA2|PHOL_MYCTO PhoH-like protein OS=Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh) OX=83331 GN=MT2437 PE=3
SV=1
Length=352
Score = 36.2 bits (82), Expect = 0.75, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 48/155 (31%), Gaps = 19/155 (12%)
Query 268 NYQKVGMQKYSTLQGPPGTGKSHFAIGLAL----YYPSARIVYTACSHAAVDALCEKALK 323
+ GP GTGK++ A+ A+ RI+ T + A + L
Sbjct 136 YVDAIDANTIVFGIGPAGTGKTYLAMAKAVHALQTKQVTRIILTRPAVEAGERL-----G 190
Query 324 YLPIDKCSRIIPARARVE--CFDKFKVNSTLEQYVFCTVNALP-------ETTADIVVFD 374
+LP +I P + +D + + P +V D
Sbjct 191 FLPGTLSEKIDPYLRPLYDALYDMMDPELIPKLMSAGVIEVAPLAYMRGRTLNDAFIVLD 250
Query 375 EISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAP 408
E T + + RL V GD Q+ P
Sbjct 251 EAQNTTAEQMKMFLTRLGFGSKVVVTGDVTQIDLP 285
>sp|P0A5S1|PHOL_MYCBO PhoH-like protein OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2389C
PE=3 SV=1
Length=352
Score = 36.2 bits (82), Expect = 0.75, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 48/155 (31%), Gaps = 19/155 (12%)
Query 268 NYQKVGMQKYSTLQGPPGTGKSHFAIGLAL----YYPSARIVYTACSHAAVDALCEKALK 323
+ GP GTGK++ A+ A+ RI+ T + A + L
Sbjct 136 YVDAIDANTIVFGIGPAGTGKTYLAMAKAVHALQTKQVTRIILTRPAVEAGERL-----G 190
Query 324 YLPIDKCSRIIPARARVE--CFDKFKVNSTLEQYVFCTVNALP-------ETTADIVVFD 374
+LP +I P + +D + + P +V D
Sbjct 191 FLPGTLSEKIDPYLRPLYDALYDMMDPELIPKLMSAGVIEVAPLAYMRGRTLNDAFIVLD 250
Query 375 EISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAP 408
E T + + RL V GD Q+ P
Sbjct 251 EAQNTTAEQMKMFLTRLGFGSKVVVTGDVTQIDLP 285
>sp|P30738|RDRP_TMVKR Replicase large subunit OS=Tobacco mosaic
virus (strain Korean NC 82) OX=31746 PE=3 SV=2
Length=1616
Score = 36.6 bits (83), Expect = 0.78, Method: Composition-based stats.
Identities = 57/344 (17%), Positives = 109/344 (32%), Gaps = 65/344 (19%)
Query 271 KVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKC 330
V K + G PG GK+ + + + A + + +A +
Sbjct 822 HVSSAKVVLVDGVPGCGKTKEILSRVNFDED---LILVPGKQAAEMIRRRA------NSS 872
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISM----ATNYDLSV 386
I+ + V+ D F +N + DE M N+ +++
Sbjct 873 GIIVATKDNVKTVDSFMMNFGKST----------RCQFKRLFIDEGLMLHTGCVNFLVTM 922
Query 387 VNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPA 446
+ VY GD Q+P + + + + L RCPA
Sbjct 923 SLCEIAY---VY-GDTQQIP---YINRVSGFPYPAHFAKLEVDEVETRRTTL----RCPA 971
Query 447 EIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAW 506
++ ++ Y+ + + + G + I++P G + F +
Sbjct 972 DVTHYLNRR-YEGFVMSTSSVKKSVSQEMVGGAAVIN---PISKPLHGKILTFT---QSD 1024
Query 507 RKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSC---NVNRFNV 563
++A+ Y+ TV QG Y V + T T S + V
Sbjct 1025 KEALLSRGYS------------DVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSPHVLV 1072
Query 564 AITRAKVGI---LCIMSD-----RDLYDKLQFTSLEIPRRNVAT 599
A++R + +M RDL +KL L++ + + T
Sbjct 1073 ALSRHTCSLKYYTVVMDPLVSIIRDL-EKLSSYLLDMYKVDAGT 1115
>sp|Q9JGL0|POLN_SAGV Polyprotein P1234 OS=Sagiyama virus OX=59303
PE=3 SV=3
Length=2467
Score = 36.6 bits (83), Expect = 0.85, Method: Composition-based stats.
Identities = 44/254 (17%), Positives = 75/254 (30%), Gaps = 65/254 (26%)
Query 280 LQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARAR 339
+ G PG+GKS + R + + + + +D +R + +
Sbjct 718 VFGVPGSGKSAIIKNMVTT----RDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILL 773
Query 340 VECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK-HYVY 398
C + + DE + L + A +R V
Sbjct 774 NGCKRG----------------------VENLYVDEAFACHSGTLLALIALVRPSGKVVL 811
Query 399 IGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYD 458
GDP Q + K N R++ RRC + VS L Y
Sbjct 812 CGDPKQCGFFNLMQLKVHY---NHNICTRVLHK-------SISRRCTLPVTAIVSTLHYQ 861
Query 459 NKLK-------------------AHKDKSAQCFKMFYKGVI----THDVSSA-----INR 490
K++ A D CF+ + K + H+V +A + R
Sbjct 862 GKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTR 921
Query 491 PQIGVVREFLTRNP 504
+ VR+ + NP
Sbjct 922 KGVYAVRQKVNENP 935
>sp|Q03495|POLN_HEVME Non-structural polyprotein pORF1 OS=Hepatitis
E virus genotype 2 (isolate Human/Mexico) OX=31768 GN=ORF1
PE=3 SV=1
Length=1691
Score = 36.6 bits (83), Expect = 0.87, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 39/98 (40%), Gaps = 11/98 (11%)
Query 355 YVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTK 414
F A T+ VV DE + L + R + H +GDP Q+PA
Sbjct 1008 AAFTPHTAARVTSGRRVVIDEAPSLPPHLLLLHMQRAASVH--LLGDPNQIPA------- 1058
Query 415 GTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTV 452
++ E+ + + + P + RCPA++ + V
Sbjct 1059 --IDFEHTGLIPAIRPELVPTSWWHVTHRCPADVCELV 1094
>sp|O93058|RDRP_TMVOM Replicase large subunit OS=Tobacco mosaic
virus (strain OM) OX=12251 PE=3 SV=1
Length=1616
Score = 36.6 bits (83), Expect = 0.88, Method: Composition-based stats.
Identities = 55/340 (16%), Positives = 106/340 (31%), Gaps = 57/340 (17%)
Query 271 KVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKC 330
V K + G PG GK+ + + + A + + +A +
Sbjct 822 HVSSAKVVLVDGVPGCGKTKEILSRVNFDED---LILVPGKQAAEMIRRRA------NSS 872
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNAR 390
I+ + V+ D F +N + DE M ++ + A
Sbjct 873 GIIVATKDNVKTVDSFMMNFGKST----------RCQFKRLFIDEGLMLHTGCVNFLVAM 922
Query 391 LRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVD 450
+ GD Q+P + + + + L RCPA++
Sbjct 923 SLCEIAYVYGDTQQIP---YINRVSGFPYPAHFAKLEVDEVETRRTTL----RCPADVTH 975
Query 451 TVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAV 510
++ Y+ + + + G + I++P G + F + ++A+
Sbjct 976 YLNRR-YEGFVMSTSSVKKSVSQEMVGGAAVIN---PISKPLHGKILTFT---QSDKEAL 1028
Query 511 FISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSC---NVNRFNVAITR 567
Y+ TV QG Y V + T T S + VA++R
Sbjct 1029 LSRGYS------------DVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSPHVLVALSR 1076
Query 568 AKVGI---LCIMSD-----RDLYDKLQFTSLEIPRRNVAT 599
+ +M RDL +KL L++ + + T
Sbjct 1077 HTCSLKYYTVVMDPLVSIIRDL-EKLSSYLLDMYKVDAGT 1115
>sp|P03586|RDRP_TMV Replicase large subunit OS=Tobacco mosaic
virus (strain vulgare) OX=12243 PE=1 SV=2
Length=1616
Score = 36.6 bits (83), Expect = 0.88, Method: Composition-based stats.
Identities = 55/340 (16%), Positives = 106/340 (31%), Gaps = 57/340 (17%)
Query 271 KVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKC 330
V K + G PG GK+ + + + A + + +A +
Sbjct 822 HVSSAKVVLVDGVPGCGKTKEILSRVNFDED---LILVPGKQAAEMIRRRA------NSS 872
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNAR 390
I+ + V+ D F +N + DE M ++ + A
Sbjct 873 GIIVATKDNVKTVDSFMMNFGKST----------RCQFKRLFIDEGLMLHTGCVNFLVAM 922
Query 391 LRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVD 450
+ GD Q+P + + + + L RCPA++
Sbjct 923 SLCEIAYVYGDTQQIP---YINRVSGFPYPAHFAKLEVDEVETRRTTL----RCPADVTH 975
Query 451 TVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAV 510
++ Y+ + + + G + I++P G + F + ++A+
Sbjct 976 YLNRR-YEGFVMSTSSVKKSVSQEMVGGAAVIN---PISKPLHGKILTFT---QSDKEAL 1028
Query 511 FISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSC---NVNRFNVAITR 567
Y+ TV QG Y V + T T S + VA++R
Sbjct 1029 LSRGYS------------DVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSPHVLVALSR 1076
Query 568 AKVGI---LCIMSD-----RDLYDKLQFTSLEIPRRNVAT 599
+ +M RDL +KL L++ + + T
Sbjct 1077 HTCSLKYYTVVMDPLVSIIRDL-EKLSSYLLDMYKVDAGT 1115
>sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm
OS=Drosophila melanogaster OX=7227 GN=Fancm PE=1 SV=2
Length=1489
Score = 36.6 bits (83), Expect = 0.91, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 51/143 (36%), Gaps = 29/143 (20%)
Query 262 FSSNVAN--YQKVGMQ----KYSTLQGPPGTGKSHFA----IGLALYYPSARIVYTACSH 311
+ +N+ YQ+ +Q K + + P G GK+ A +YP +IV+ A +
Sbjct 52 YPNNLPLRSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTR 111
Query 312 AAVDALCEKALKY--LPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNAL------ 363
V + K P + ++ R + + + ++ F T +
Sbjct 112 PLVSQQIHASQKIMPFPSEDTVQLTGQLPRPKRAELW----ASKRVFFATPQVVHSDMLE 167
Query 364 -------PETTADIVVFDEISMA 379
P + ++V DE A
Sbjct 168 ADGECSFPFGSIKLIVVDEAHRA 190
>sp|Q9IVZ9|POLN_HEVCT Non-structural polyprotein pORF1 OS=Hepatitis
E virus genotype 4 (isolate Human/China/T1) OX=509627
GN=ORF1 PE=3 SV=1
Length=1707
Score = 36.2 bits (82), Expect = 1.0, Method: Composition-based stats.
Identities = 33/186 (18%), Positives = 56/186 (30%), Gaps = 48/186 (26%)
Query 392 RAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDT 451
RA +GDP Q+PA ++ E+ V + + P + RCPA++ +
Sbjct 1059 RASSVHLLGDPNQIPA---------IDFEHAGLVPAIRPELVPTKWWHLTYRCPADVCEL 1109
Query 452 VSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVF 511
+S + R F P + VF
Sbjct 1110 -----------------------IRGAYPKIQTASRVLR------SLFWEEPPVGQNLVF 1140
Query 512 ISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR--FNVAITRAK 569
+ N A TV +QG+ + T + +R VA+TR
Sbjct 1141 TQAAKAANPGAI--------TVHEAQGATFTETTIIATADARGLIQSSRAHAIVALTRHT 1192
Query 570 VGILCI 575
+ +
Sbjct 1193 EKCVVV 1198
>sp|A7ZF27|EFTS_CAMC1 Elongation factor Ts OS=Campylobacter concisus
(strain 13826) OX=360104 GN=tsf PE=3 SV=2
Length=354
Score = 35.8 bits (81), Expect = 1.1, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 43/98 (44%), Gaps = 6/98 (6%)
Query 467 KSAQCFKMFYKGVITHDVSSAINRPQIGVVR---EFLTRNPAWRKAVFISPYNSQNAVAS 523
+ + ++ +G+++ +V S + I + +F+ RNP ++ + + Q++
Sbjct 48 AAKKADRLASEGLVSVEVCSKCKKATISEINSETDFVARNPQFQALAKDTTAHIQSSGIK 107
Query 524 KILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRF 561
+ L T T++ + EY TQ + V RF
Sbjct 108 TVEELNTSTLNGVKFEEY---FKTQIATIGENLVVRRF 142
>sp|F4KID5|AATPH_ARATH AAA-ATPase At5g17750 OS=Arabidopsis thaliana
OX=3702 GN=At5g17750 PE=3 SV=1
Length=392
Score = 35.4 bits (80), Expect = 1.6, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (5%)
Query 260 DEFSSNVANYQKVGM--QKYSTLQGPPGTGKSHFAIGLALY 298
D F Y++VG ++ L GPPGTGKS +A Y
Sbjct 203 DRFIKRKDYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMANY 243
>sp|P60373|RFCL_NANEQ Replication factor C large subunit OS=Nanoarchaeum
equitans (strain Kin4-M) OX=228908 GN=rfcL PE=3 SV=1
Length=430
Score = 35.4 bits (80), Expect = 1.8, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 17/31 (55%), Gaps = 0/31 (0%)
Query 266 VANYQKVGMQKYSTLQGPPGTGKSHFAIGLA 296
V NY+K K L GPPGTGK+ LA
Sbjct 59 VINYKKKYKGKALLLYGPPGTGKTSSVYALA 89
>sp|Q98745|RDRP_TMVRA Replicase large subunit OS=Tobacco mosaic
virus (strain Rakkyo) OX=138310 PE=3 SV=1
Length=1616
Score = 35.4 bits (80), Expect = 1.9, Method: Composition-based stats.
Identities = 48/305 (16%), Positives = 90/305 (30%), Gaps = 48/305 (16%)
Query 271 KVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKC 330
V K + G PG GK+ + + + A + + +A +
Sbjct 822 HVSNAKVVLVDGVPGCGKTKEILSRVNFDED---LILVPGKQAAEMIRRRA------NSS 872
Query 331 SRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNAR 390
I+ + V D F +N + DE M ++ + A
Sbjct 873 GIIVATKDNVRTVDSFMMN----------FGKTTRCQFKRLFIDEGLMLHTGCVNFLVAM 922
Query 391 LRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVD 450
GD Q+P + S + + L RCPA++
Sbjct 923 SLCDVAYVYGDTQQIP---YINRVSGFPYPAHFSKLEVDEVETRRTTL----RCPADVTH 975
Query 451 TVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAV 510
++ Y+ + + + G + I++P G + F + ++A+
Sbjct 976 YLNRR-YEGFVVSTSSVKKSVSQEMVSGAAVIN---PISKPLHGKILTFT---QSDKEAL 1028
Query 511 FISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSC---NVNRFNVAITR 567
Y+ TV QG Y V + T T S + VA++R
Sbjct 1029 LSRGYS------------EVHTVHEVQGETYSDVSLVRLTPTPISIIAGDSPHVLVALSR 1076
Query 568 AKVGI 572
+
Sbjct 1077 HTCSL 1081
>sp|Q08582|RGYR1_SULAC Reverse gyrase 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157
/ NCIMB 11770) OX=330779 GN=rgy1 PE=1 SV=3
Length=1248
Score = 35.4 bits (80), Expect = 1.9, Method: Composition-based stats.
Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 26/181 (14%)
Query 212 RGTTTYKLNVGDY--FVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANY 269
R +TY+L +G L + E + L + D++ S V+ +
Sbjct 21 RSISTYRLLLGSVCNICLEEDKEYKNIGDLIKDIEKQGNLIKLKDIQRVLDDYESFVSVF 80
Query 270 QKV------GMQKYST----------LQGPPGTGKSHFAIG--LALYYPSARIVYTACSH 311
+++ G QK + PPG GK+ F + + LY + + +
Sbjct 81 RRLLGFPPFGPQKSWIYRLLSGESFAIIAPPGLGKTTFGLISSIYLYLRGKKSILVFPTK 140
Query 312 AAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIV 371
+ V +K Y+ + P + + + + E L T DI
Sbjct 141 SLVRQAIDKLSSYIQNLAEIKENPPKV-IYYYSGMSASERKEA-----DEGLQSKTFDIF 194
Query 372 V 372
+
Sbjct 195 I 195
>sp|O07635|YLAK_BACSU Uncharacterized protein YlaK OS=Bacillus
subtilis (strain 168) OX=224308 GN=ylaK PE=3 SV=1
Length=442
Score = 35.0 bits (79), Expect = 2.1, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query 371 VVFDEISMATNYDLSVVNARLR-AKHYVYIGDPAQLPAPRTLLTKGTLEP 419
++ DE T +++ + R+ V +GDP Q+ P L
Sbjct 361 IIIDEAQNLTRHEVKTLLTRVGEGSKIVLMGDPEQIDHPYLDSLNNGLAY 410
>sp|Q7UA24|UVRB_PARMW UvrABC system protein B OS=Parasynechococcus
marenigrum (strain WH8102) OX=84588 GN=uvrB PE=3 SV=1
Length=677
Score = 35.0 bits (79), Expect = 2.1, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 30/80 (38%), Gaps = 1/80 (1%)
Query 273 GMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSR 332
G ++Y TL G GTGK+ F + + + A + LC + ++ P +
Sbjct 29 GGERYQTLLGATGTGKT-FTMANVIAQTGRPALVLAHNKTLAAQLCNELREFFPENAVEY 87
Query 333 IIPARARVECFDKFKVNSTL 352
I + V+ T
Sbjct 88 FISYYDYYQPEAYVPVSDTY 107
>sp|B8HQA9|UVRB_CYAP4 UvrABC system protein B OS=Cyanothece sp.
(strain PCC 7425 / ATCC 29141) OX=395961 GN=uvrB PE=3 SV=1
Length=665
Score = 35.0 bits (79), Expect = 2.2, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query 254 PTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAA 313
PT + + A+ Q ++ TL G GTGK+H I + + A +
Sbjct 12 PTGDQPRAIAQLTASLQ--AEHRFQTLLGATGTGKTH-TIARVIEKIGKPTLVLAHNKTL 68
Query 314 VDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTL 352
LC + ++ P + I + V T
Sbjct 69 AAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVTDTY 107
>sp|P33561|RHO_BORBU Transcription termination factor Rho OS=Borreliella
burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532
/ B31) OX=224326 GN=rho PE=3 SV=3
Length=515
Score = 35.0 bits (79), Expect = 2.3, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 30/72 (42%), Gaps = 7/72 (10%)
Query 238 PTLV-PQEHYVRITGLYPTLNISDEFSS------NVANYQKVGMQKYSTLQGPPGTGKSH 290
PT + + +T LYP + ++ E+ + + + +G + + + PP GK+
Sbjct 222 PTFAQNRIPFDNLTPLYPNVKLNLEYENCNISTRLINLFSPIGKGQRALIVSPPKAGKTT 281
Query 291 FAIGLALYYPSA 302
+A +
Sbjct 282 LLQKIANAITTN 293
>sp|Q64MX8|SYR_BACFR Arginine--tRNA ligase OS=Bacteroides fragilis
(strain YCH46) OX=295405 GN=argS PE=3 SV=1
Length=597
Score = 34.7 bits (78), Expect = 2.8, Method: Composition-based stats.
Identities = 26/101 (26%), Positives = 40/101 (40%), Gaps = 13/101 (13%)
Query 117 AGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRP-- 174
GDY +A K + AE + E+ A + RE+ + WE G P
Sbjct 196 VGDYYVAFD-----KHYKAEVAELMEKGMSKEEAEAASPLMNEAREMLVKWEAGDPEVRA 250
Query 175 --PLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRG 213
+ N+V+TG+ T K+ +G F+K Y G
Sbjct 251 LWQMMNNWVYTGFDETYR-KMGVG---FDKIYYESNTYLEG 287
>sp|P29324|POLN_HEVBU Non-structural polyprotein pORF1 OS=Hepatitis
E virus genotype 1 (isolate Human/Burma) OX=31767 GN=ORF1
PE=1 SV=1
Length=1693
Score = 34.7 bits (78), Expect = 3.2, Method: Composition-based stats.
Identities = 48/305 (16%), Positives = 83/305 (27%), Gaps = 88/305 (29%)
Query 273 GMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSR 332
G+ +Y G PG+GKS + V + +A + +R
Sbjct 966 GVVQYQFTAGVPGSGKSRSITQADVD------VVVVPTRELRNAWRRRGFAAFTPHTAAR 1019
Query 333 IIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLR 392
+ R VV DE + L + R
Sbjct 1020 VTQGRR--------------------------------VVIDEAPSLPPHLLLLHMQRAA 1047
Query 393 AKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTV 452
H +GDP Q+PA ++ E+ V + +GP + R PA++ + +
Sbjct 1048 TVH--LLGDPNQIPA---------IDFEHAGLVPAIRPDLGPTSWWHVTHRWPADVCELI 1096
Query 453 SALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFI 512
+++ + + G P +G F
Sbjct 1097 RGAY------PMIQTTSRVLRSLFWGE-----------PAVGQKLVFTQAAKPANPGSV- 1138
Query 513 SPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNR--FNVAITRAKV 570
TV +QG+ Y T + +R VA+TR
Sbjct 1139 -------------------TVHEAQGATYTETTIIATADARGLIQSSRAHAIVALTRHTE 1179
Query 571 GILCI 575
+ I
Sbjct 1180 KCVII 1184
>sp|Q0P9V4|PIF1_CAMJE ATP-dependent DNA helicase pif1 OS=Campylobacter
jejuni subsp. jejuni serotype O:2 (strain ATCC 700819
/ NCTC 11168) OX=192222 GN=pif1 PE=3 SV=1
Length=447
Score = 34.3 bits (77), Expect = 3.5, Method: Composition-based stats.
Identities = 34/156 (22%), Positives = 55/156 (35%), Gaps = 14/156 (9%)
Query 278 STLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAR 337
L G G GKS L Y + + A +A+ A + C
Sbjct 14 VFLSGGAGVGKSFLTNELIKSYRKQKKLAIALGSSALSAFNIGGVTLHSF-FCLGYCDDM 72
Query 338 ARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK--- 394
++ D+ + +Q T T ++++ DEISM + ++ RL+
Sbjct 73 MKLSVLDRNQ-----KQKEKLTKLKELLKTIELIIIDEISMVSANVFEMIGFRLKNSQFN 127
Query 395 -HYVYIGDPAQLPAPRTLLTKGTL---EPEYFNSVC 426
+ +GD QLP P K TL F+S
Sbjct 128 GKILVVGDFFQLP-PVIKEKKETLFNHSYYAFSSFF 162
>sp|Q8BMU0|ZNF76_MOUSE Zinc finger protein 76 OS=Mus musculus
OX=10090 GN=Znf76 PE=2 SV=1
Length=568
Score = 34.3 bits (77), Expect = 3.9, Method: Composition-based stats.
Identities = 33/168 (20%), Positives = 60/168 (36%), Gaps = 15/168 (9%)
Query 22 RPFLCCK--CCYDHVISTSHKLVLSV----NPYVCNAPGCD--VTDVTQLYLGGMSYYCK 73
RP+ C + C +T++K + + PYVC PGC T+ + LY +
Sbjct 283 RPYTCPEPHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLY---KHHVVH 339
Query 74 SHKPPISFPLCA----NGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYILANTCTER 129
+H P + C ++K + G T+ + A + A
Sbjct 340 THCKPYTCSSCGKTYRQTSTLAMHKRSAHGELEATEESEQALYEQQQLEAASAAEESPPP 399
Query 130 LKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLN 177
A + EE+ + +A V E ++ L + G + L+
Sbjct 400 KPTHIAYLSEVKEESSAIPTQVAMVTEEDGPPQVALITQDGTQQVSLS 447
>sp|Q6GH21|PSTB_STAAR Phosphate import ATP-binding protein PstB
OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=pstB
PE=3 SV=1
Length=283
Score = 33.9 bits (76), Expect = 4.1, Method: Composition-based stats.
Identities = 29/214 (14%), Positives = 62/214 (29%), Gaps = 27/214 (13%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + + GP G GKS + L R+V + + + +
Sbjct 63 QITAIIGPSGCGKSTYIKTL------NRMVELVPTVKTAGKILYRDQDIFD----QKYSK 112
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTA--DIVVFDEISMATNYDLSVVNA---R 390
+ R F+ + + ++ + P+ + V DEI + ++ + R
Sbjct 113 EQLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKNKKVLDEIVEKSLRGAAIWDELKDR 172
Query 391 LRAKHYVYIGDPAQ---------LPAPRTLLT--KGTLEPEYFNSVCRLMKTIGPDMF-L 438
L Y G Q + L+ L+P V L++ + +
Sbjct 173 LHTNAYSLSGGQQQRVCIARCLAIEPEVILMDEPTSALDPISTLRVEELVQELKEKYTII 232
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCF 472
+ + N D + + F
Sbjct 233 MVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIF 266
>sp|P69880|PSTB_STAAW Phosphate import ATP-binding protein PstB
OS=Staphylococcus aureus (strain MW2) OX=196620 GN=pstB PE=3
SV=1
Length=283
Score = 33.9 bits (76), Expect = 4.1, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 62/214 (29%), Gaps = 27/214 (13%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + + GP G GKS + L R+V S + + +
Sbjct 63 QITAIIGPSGCGKSTYIKTL------NRMVELVPSVKTAGKILYRDQDIFD----QKYSK 112
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTA--DIVVFDEISMATNYDLSVVNA---R 390
+ R F+ + + ++ + P+ + V DEI + ++ + R
Sbjct 113 EQLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKNKKVLDEIVEKSLRGAAIWDELKDR 172
Query 391 LRAKHYVYIGDPAQ---------LPAPRTLLT--KGTLEPEYFNSVCRLMKTIGPDMF-L 438
L Y G Q + L+ L+P V L++ + +
Sbjct 173 LHTNAYSLSGGQQQRVCIARCLAIEPEVILMDEPTSALDPISTLRVEELVQELKEKYTII 232
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCF 472
+ + N D + + F
Sbjct 233 MVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIF 266
>sp|Q6G9H4|PSTB_STAAS Phosphate import ATP-binding protein PstB
OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=pstB
PE=3 SV=1
Length=283
Score = 33.9 bits (76), Expect = 4.1, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 62/214 (29%), Gaps = 27/214 (13%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + + GP G GKS + L R+V S + + +
Sbjct 63 QITAIIGPSGCGKSTYIKTL------NRMVELVPSVKTAGKILYRDQDIFD----QKYSK 112
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTA--DIVVFDEISMATNYDLSVVNA---R 390
+ R F+ + + ++ + P+ + V DEI + ++ + R
Sbjct 113 EQLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKNKKVLDEIVEKSLRGAAIWDELKDR 172
Query 391 LRAKHYVYIGDPAQ---------LPAPRTLLT--KGTLEPEYFNSVCRLMKTIGPDMF-L 438
L Y G Q + L+ L+P V L++ + +
Sbjct 173 LHTNAYSLSGGQQQRVCIARCLAIEPEVILMDEPTSALDPISTLRVEELVQELKEKYTII 232
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCF 472
+ + N D + + F
Sbjct 233 MVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIF 266
>sp|P69879|PSTB_STAAN Phosphate import ATP-binding protein PstB
OS=Staphylococcus aureus (strain N315) OX=158879 GN=pstB PE=3
SV=1
Length=283
Score = 33.9 bits (76), Expect = 4.1, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 62/214 (29%), Gaps = 27/214 (13%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + + GP G GKS + L R+V S + + +
Sbjct 63 QITAIIGPSGCGKSTYIKTL------NRMVELVPSVKTAGKILYRDQDIFD----QKYSK 112
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTA--DIVVFDEISMATNYDLSVVNA---R 390
+ R F+ + + ++ + P+ + V DEI + ++ + R
Sbjct 113 EQLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKNKKVLDEIVEKSLRGAAIWDELKDR 172
Query 391 LRAKHYVYIGDPAQ---------LPAPRTLLT--KGTLEPEYFNSVCRLMKTIGPDMF-L 438
L Y G Q + L+ L+P V L++ + +
Sbjct 173 LHTNAYSLSGGQQQRVCIARCLAIEPEVILMDEPTSALDPISTLRVEELVQELKEKYTII 232
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCF 472
+ + N D + + F
Sbjct 233 MVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIF 266
>sp|P69878|PSTB_STAAM Phosphate import ATP-binding protein PstB
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878
GN=pstB PE=3 SV=1
Length=283
Score = 33.9 bits (76), Expect = 4.1, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 62/214 (29%), Gaps = 27/214 (13%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + + GP G GKS + L R+V S + + +
Sbjct 63 QITAIIGPSGCGKSTYIKTL------NRMVELVPSVKTAGKILYRDQDIFD----QKYSK 112
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTA--DIVVFDEISMATNYDLSVVNA---R 390
+ R F+ + + ++ + P+ + V DEI + ++ + R
Sbjct 113 EQLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKNKKVLDEIVEKSLRGAAIWDELKDR 172
Query 391 LRAKHYVYIGDPAQ---------LPAPRTLLT--KGTLEPEYFNSVCRLMKTIGPDMF-L 438
L Y G Q + L+ L+P V L++ + +
Sbjct 173 LHTNAYSLSGGQQQRVCIARCLAIEPEVILMDEPTSALDPISTLRVEELVQELKEKYTII 232
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCF 472
+ + N D + + F
Sbjct 233 MVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIF 266
>sp|P69881|PSTB_STAAC Phosphate import ATP-binding protein PstB
OS=Staphylococcus aureus (strain COL) OX=93062 GN=pstB PE=3
SV=1
Length=283
Score = 33.9 bits (76), Expect = 4.1, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 62/214 (29%), Gaps = 27/214 (13%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + + GP G GKS + L R+V S + + +
Sbjct 63 QITAIIGPSGCGKSTYIKTL------NRMVELVPSVKTAGKILYRDQDIFD----QKYSK 112
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTA--DIVVFDEISMATNYDLSVVNA---R 390
+ R F+ + + ++ + P+ + V DEI + ++ + R
Sbjct 113 EQLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKNKKVLDEIVEKSLRGAAIWDELKDR 172
Query 391 LRAKHYVYIGDPAQ---------LPAPRTLLT--KGTLEPEYFNSVCRLMKTIGPDMF-L 438
L Y G Q + L+ L+P V L++ + +
Sbjct 173 LHTNAYSLSGGQQQRVCIARCLAIEPEVILMDEPTSALDPISTLRVEELVQELKEKYTII 232
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCF 472
+ + N D + + F
Sbjct 233 MVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIF 266
>sp|Q2FYQ0|PSTB_STAA8 Phosphate import ATP-binding protein PstB
OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061
GN=pstB PE=3 SV=1
Length=283
Score = 33.9 bits (76), Expect = 4.1, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 62/214 (29%), Gaps = 27/214 (13%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + + GP G GKS + L R+V S + + +
Sbjct 63 QITAIIGPSGCGKSTYIKTL------NRMVELVPSVKTAGKILYRDQDIFD----QKYSK 112
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTA--DIVVFDEISMATNYDLSVVNA---R 390
+ R F+ + + ++ + P+ + V DEI + ++ + R
Sbjct 113 EQLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKNKKVLDEIVEKSLRGAAIWDELKDR 172
Query 391 LRAKHYVYIGDPAQ---------LPAPRTLLT--KGTLEPEYFNSVCRLMKTIGPDMF-L 438
L Y G Q + L+ L+P V L++ + +
Sbjct 173 LHTNAYSLSGGQQQRVCIARCLAIEPEVILMDEPTSALDPISTLRVEELVQELKEKYTII 232
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCF 472
+ + N D + + F
Sbjct 233 MVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIF 266
>sp|Q2FH51|PSTB_STAA3 Phosphate import ATP-binding protein PstB
OS=Staphylococcus aureus (strain USA300) OX=367830 GN=pstB
PE=3 SV=1
Length=283
Score = 33.9 bits (76), Expect = 4.1, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 62/214 (29%), Gaps = 27/214 (13%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + + GP G GKS + L R+V S + + +
Sbjct 63 QITAIIGPSGCGKSTYIKTL------NRMVELVPSVKTAGKILYRDQDIFD----QKYSK 112
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTA--DIVVFDEISMATNYDLSVVNA---R 390
+ R F+ + + ++ + P+ + V DEI + ++ + R
Sbjct 113 EQLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKNKKVLDEIVEKSLRGAAIWDELKDR 172
Query 391 LRAKHYVYIGDPAQ---------LPAPRTLLT--KGTLEPEYFNSVCRLMKTIGPDMF-L 438
L Y G Q + L+ L+P V L++ + +
Sbjct 173 LHTNAYSLSGGQQQRVCIARCLAIEPEVILMDEPTSALDPISTLRVEELVQELKEKYTII 232
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCF 472
+ + N D + + F
Sbjct 233 MVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIF 266
>sp|Q07408|MSP4_ANAMA Major surface antigen 4 OS=Anaplasma marginale
OX=770 GN=msp4 PE=1 SV=1
Length=282
Score = 33.9 bits (76), Expect = 4.2, Method: Composition-based stats.
Identities = 26/75 (35%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Query 30 CYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQ------LYLG--GMSYYCKSHKPPISF 81
CYD V+ T L V+PYVC G D+++ Y G G+SY P IS
Sbjct 180 CYD-VLHTD----LPVSPYVCAGIGASFVDISKQVTTKLAYRGKVGISY---QFTPEIS- 230
Query 82 PLCANGQVFGLYKNT 96
L A G GL+ +
Sbjct 231 -LVAGGFYHGLFDES 244
>sp|Q2YXY2|PSTB_STAAB Phosphate import ATP-binding protein PstB
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036
GN=pstB PE=3 SV=1
Length=283
Score = 33.9 bits (76), Expect = 4.3, Method: Composition-based stats.
Identities = 29/214 (14%), Positives = 62/214 (29%), Gaps = 27/214 (13%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIP 335
+ + + GP G GKS + L R+V + + + +
Sbjct 63 QITAIIGPSGCGKSTYIKTL------NRMVELVPTVKTAGKILYRDQDIFD----QKYSK 112
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTA--DIVVFDEISMATNYDLSVVNA---R 390
+ R F+ + + ++ + P+ + V DEI + ++ + R
Sbjct 113 EQLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKNKKVLDEIVEKSLRGAAIWDELKDR 172
Query 391 LRAKHYVYIGDPAQ---------LPAPRTLLT--KGTLEPEYFNSVCRLMKTIGPDMF-L 438
L Y G Q + L+ L+P V L++ + +
Sbjct 173 LHTNAYSLSGGQQQRVCIARCLAIEPEVILMDEPTSALDPISTLRVEELVQELKEKYTII 232
Query 439 GTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCF 472
+ + N D + + F
Sbjct 233 MVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIF 266
>sp|Q9WC28|POLN_HEVHY Non-structural polyprotein pORF1 OS=Hepatitis
E virus genotype 1 (isolate Human/India/Hyderabad) OX=512346
GN=ORF1 PE=1 SV=1
Length=1693
Score = 34.3 bits (77), Expect = 4.8, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 37/98 (38%), Gaps = 11/98 (11%)
Query 355 YVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTK 414
F A T VV DE + L + R H +GDP Q+PA
Sbjct 1010 AAFTPHTAARVTDGRRVVIDEAPSLPPHLLLLHMQRAATVH--LLGDPNQIPA------- 1060
Query 415 GTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTV 452
++ E+ V + + P + RCPA++ + +
Sbjct 1061 --IDFEHPGLVPAIRPDLAPTSWWHVTHRCPADVCELI 1096
>sp|Q295E6|SUV3_DROPS ATP-dependent RNA helicase SUV3 homolog,
mitochondrial OS=Drosophila pseudoobscura pseudoobscura OX=46245
GN=GA22038 PE=3 SV=1
Length=762
Score = 33.9 bits (76), Expect = 6.0, Method: Composition-based stats.
Identities = 20/108 (19%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Query 275 QKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRII 334
+K GP +GK++ A+ L + VY + KA + C +
Sbjct 187 RKIVFHSGPTNSGKTYHAMERYLSAKTG--VYCGPLKLLATEVYNKANE--RGTPCDLVT 242
Query 335 PARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNY 382
+ D N +VN ++ V DEI +
Sbjct 243 GEERKFGISDNSPANHVACTVEMTSVNT----PYEVAVIDEIQQIRDP 286
>sp|P45158|RECD_HAEIN RecBCD enzyme subunit RecD OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421
GN=recD PE=3 SV=1
Length=640
Score = 33.5 bits (75), Expect = 6.2, Method: Composition-based stats.
Identities = 68/344 (20%), Positives = 108/344 (31%), Gaps = 58/344 (17%)
Query 274 MQKYSTLQGPPGTGKSHFAIGL-----ALYYPSARIVYTACSHAAVDALCEKALKYL--- 325
+S + G PGTGK+ L L+ I A + A L E L
Sbjct 186 KSPFSIITGGPGTGKTTTVTRLLLVLQELFDCKLHIKLVAPTGKAASRLEESIKNALGFM 245
Query 326 --PIDKCSRI---IPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMAT 380
++ + IP +A VN+ + + + N L D++V DE SM
Sbjct 246 QEKMNVSHSLFNAIPQKAST-LHSLLGVNAFNDYTRYNSHNPL---QLDVLVVDETSMID 301
Query 381 NYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTL-----EPEYFNSVCRLMKTIGP 434
++ + L+ + +GD AQL + G L +P L+ T G
Sbjct 302 LPMMAKLINALKPETRLILLGDQAQLASVEAGAVLGELAQFVTQPYSHEQAAYLLATTGY 361
Query 435 DMFLGTCRR------CPAEIVDTVSALVYDNKL-----KAHKDKSAQCFKMFYKG---VI 480
+ C C KL K D S + F + +
Sbjct 362 KVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQKGKADDSLELFDHYPQELHFNS 421
Query 481 THDVSSAIN---RPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQ 537
+D A+N + + R FL RK I P N++N Q
Sbjct 422 LNDEGDAVNQVVKSAVENYRTFLKMLDDLRKQK-IDP-NAKNE----------------Q 463
Query 538 GSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDL 581
G Y I Q + N+ + I + ++ L
Sbjct 464 GISYAEAIQVQFNSVRFLTALRNNNLGVENLNKEIALALREQKL 507
>sp|Q8F7Y2|RUVB_LEPIN Holliday junction branch migration complex
subunit RuvB OS=Leptospira interrogans serogroup Icterohaemorrhagiae
serovar Lai (strain 56601) OX=189518 GN=ruvB PE=3
SV=1
Length=341
Score = 33.1 bits (74), Expect = 6.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query 236 SAPTLVPQEHYVRITGLYPTL-----NISDEFSSNVANYQKVGMQKYST----LQGPPGT 286
+ TL P+E + +GL P+L + ++ Q +K + + GPPG
Sbjct 3 KSHTLNPEEEFEEESGLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGL 62
Query 287 GKSHFAIGLALYYPSARIVYTAC 309
GK+ A G+ R+ T+
Sbjct 63 GKTTLA-GIISNELGTRLTITSA 84
>sp|P61534|RUVB_LEPIC Holliday junction branch migration complex
subunit RuvB OS=Leptospira interrogans serogroup Icterohaemorrhagiae
serovar copenhageni (strain Fiocruz L1-130) OX=267671
GN=ruvB PE=3 SV=1
Length=341
Score = 33.1 bits (74), Expect = 6.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query 236 SAPTLVPQEHYVRITGLYPTL-----NISDEFSSNVANYQKVGMQKYST----LQGPPGT 286
+ TL P+E + +GL P+L + ++ Q +K + + GPPG
Sbjct 3 KSHTLNPEEEFEEESGLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGL 62
Query 287 GKSHFAIGLALYYPSARIVYTAC 309
GK+ A G+ R+ T+
Sbjct 63 GKTTLA-GIISNELGTRLTITSA 84
>sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus
512/2005 OX=693999 GN=1a PE=3 SV=1
Length=4128
Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query 509 AVFISPYNSQNAV--ASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAIT 566
I+ Y N V A + L D + +VI + +T + N NR
Sbjct 1544 GGAIANYKKSNPVLPAGNCVTLKC---DGF--ISFTFVILPKEGDTNYEKNFNRAIAKFL 1598
Query 567 RAKVGILCIMSDRDLYDKLQFTSL 590
+ K +L ++ D +++K+ S+
Sbjct 1599 KLKGSLLVVVEDSSVFNKISHASV 1622
>sp|Q5AGZ9|RUVB2_CANAL RuvB-like helicase 2 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) OX=237561 GN=RVB2 PE=3 SV=1
Length=498
Score = 33.1 bits (74), Expect = 7.8, Method: Composition-based stats.
Identities = 13/42 (31%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query 276 KYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDAL 317
+ + GPP TGK+ A+GL+ ++ +TA + + V +L
Sbjct 73 RAVLIAGPPSTGKTAIAMGLS-QSLGNQVPFTALAASEVFSL 113
>sp|Q04YY5|RUVB_LEPBL Holliday junction branch migration complex
subunit RuvB OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) OX=355276 GN=ruvB PE=3 SV=1
Length=341
Score = 32.7 bits (73), Expect = 8.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query 236 SAPTLVPQEHYVRITGLYPTL-----NISDEFSSNVANYQKVGMQKYST----LQGPPGT 286
+ TL P+E + +GL P+L + ++ Q +K + + GPPG
Sbjct 3 KSHTLNPEEEFEEESGLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGL 62
Query 287 GKSHFAIGLALYYPSARIVYTAC 309
GK+ A G+ R+ T+
Sbjct 63 GKTTLA-GIVSNELGTRLTITSA 84
>sp|Q04UI9|RUVB_LEPBJ Holliday junction branch migration complex
subunit RuvB OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain JB197) OX=355277 GN=ruvB PE=3 SV=1
Length=341
Score = 32.7 bits (73), Expect = 8.8, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query 236 SAPTLVPQEHYVRITGLYPTL-----NISDEFSSNVANYQKVGMQKYST----LQGPPGT 286
+ TL P+E + +GL P+L + ++ Q +K + + GPPG
Sbjct 3 KSHTLNPEEEFEEESGLRPSLLSEFIGQKEVLNNLTVYVQAAKNRKRALDHVLISGPPGL 62
Query 287 GKSHFAIGLALYYPSARIVYTAC 309
GK+ A G+ R+ T+
Sbjct 63 GKTTLA-GIVSNELGTRLTITSA 84
>sp|Q7NCS3|ATPA_GLOVI ATP synthase subunit alpha OS=Gloeobacter
violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=atpA
PE=3 SV=1
Length=513
Score = 33.1 bits (74), Expect = 9.2, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 58/163 (36%), Gaps = 16/163 (10%)
Query 272 VGMQKYSTLQGPPGTGKSHFAIGLALYYPSARI--VYTACSHAAVDALCEKALKYLPIDK 329
+G + + G TGK+ AI L + VY A A + + ++ L
Sbjct 160 IGRGQRELIIGDRQTGKTTIAIDTILNQKGKGVVCVYVAIGQKA--STVAQIVEVLRSRG 217
Query 330 C---SRIIPARARVECFDKFKVNSTLEQ---YVFCTVNALP----ETTADIVVFDEIS-M 378
+ I+ A A ++ T YV LP + A ++V+D++S
Sbjct 218 ALEYTIIVAANANEPAALQYLAPYTGCTLGEYVMYNGLTLPGSDKKINAALLVYDDLSKQ 277
Query 379 ATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEY 421
A Y + R Y GD L + R L L P+
Sbjct 278 AVAYRQMSLLLRRPPGREAYPGDVFYLHS-RLLERAAKLSPDL 319
>sp|A0QS28|RECD_MYCS2 RecBCD enzyme subunit RecD OS=Mycolicibacterium
smegmatis (strain ATCC 700084 / mc(2)155) OX=246196
GN=recD PE=3 SV=1
Length=554
Score = 33.1 bits (74), Expect = 9.3, Method: Composition-based stats.
Identities = 30/133 (23%), Positives = 48/133 (36%), Gaps = 16/133 (12%)
Query 288 KSHFAIGLALY---------YPSARIVYTACSHAAVDALCEKA---LKYLPIDKCSRIIP 335
K+ L PS RI A + A L E + L + + R+
Sbjct 161 KTTTVARLLALLAEQAALAGKPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTG 220
Query 336 ARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAK- 394
A T ++ N LP D++V DE SM + ++ + +R +
Sbjct 221 LHATTLHRLLGPRPDTSSRFRHHRANRLPH---DVIVVDETSMVSLTMMARLLEAVRPQT 277
Query 395 HYVYIGDPAQLPA 407
V +GDP QL +
Sbjct 278 RLVLVGDPDQLAS 290
Lambda K H a alpha
0.318 0.133 0.379 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0408 0.140 1.90 42.6 43.6
Effective search space used: 64795407156
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40