PSIBLAST 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: uniprot_sprot.fasta 571,282 sequences; 206,678,396 total letters Results from round 1 Query= YP_009725307.1 RNA-dependent RNA polymerase [Severe acute respiratory syndrome coronavirus 2] Length=932 Score E Sequences producing significant alignments: (Bits) Value sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 1969 0.0 sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 1914 0.0 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 1911 0.0 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 1906 0.0 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 1904 0.0 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 1451 0.0 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 1423 0.0 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 1413 0.0 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 1411 0.0 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 1410 0.0 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 1308 0.0 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 1306 0.0 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 1300 0.0 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 1299 0.0 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 1299 0.0 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 1296 0.0 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 1294 0.0 sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 1294 0.0 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 1292 0.0 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 1290 0.0 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 1287 0.0 sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 1186 0.0 sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 1186 0.0 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 1184 0.0 sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 1182 0.0 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 1174 0.0 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 1163 0.0 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 1151 0.0 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 1142 0.0 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 1128 0.0 sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat ... 483 2e-163 sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turk... 444 2e-148 sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11... 131 2e-29 sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX... 117 5e-25 sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir... 100 6e-20 sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhag... 49.3 2e-04 sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reprodu... 47.4 8e-04 sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reprodu... 46.6 0.001 sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprodu... 46.2 0.002 sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reprodu... 46.2 0.002 sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic... 38.9 0.30 sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reprodu... 38.5 0.40 sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrog... 38.1 0.48 sp|C4LCH1|UXUA_TOLAT Mannonate dehydratase OS=Tolumonas auensis (... 37.4 0.56 sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reprodu... 38.1 0.60 sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon ... 37.7 0.66 sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrog... 37.7 0.66 sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic... 36.6 1.4 sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain ... 35.8 1.6 sp|Q492K3|HISX_BLOPB Histidinol dehydrogenase OS=Blochmannia penn... 35.4 2.4 sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteriti... 35.0 4.3 sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic... 34.7 6.0 sp|Q0CRF3|ATG5_ASPTN Autophagy protein 5 OS=Aspergillus terreus (... 33.5 9.6 >sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 1969 bits (5102), Expect = 0.0, Method: Compositional matrix adjust. Identities = 932/932 (100%), Positives = 932/932 (100%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD Sbjct 4393 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 4452 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT Sbjct 4453 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 4512 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4513 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4572 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL Sbjct 4573 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 4632 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN Sbjct 4633 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 4692 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4693 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4752 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4753 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4812 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4813 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4872 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4873 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4932 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4933 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4992 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA Sbjct 4993 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 5052 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5053 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5112 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK Sbjct 5113 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 5172 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5173 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5232 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5233 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5292 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5293 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5324 >sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 1914 bits (4957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 898/932 (96%), Positives = 916/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4370 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4430 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4490 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQ+LLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4550 RVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRAL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4610 LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4669 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4670 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4729 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4730 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4789 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4790 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4849 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4850 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4909 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4910 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4969 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH TCC+LSHRFYRLANECA Sbjct 4970 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECA 5029 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5030 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5089 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5090 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5149 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5150 NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5209 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5210 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5269 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5270 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5301 >sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 1911 bits (4951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 897/932 (96%), Positives = 914/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTG STDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4368 SADASTFLNRVCGVSAARLTPCGTGISTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4427 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4428 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT 4487 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4488 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4547 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4548 RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4607 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRAL AESH+D DL KP IKWDLLKYDFT ERL LFDRYFKYWDQTYHPNC+N Sbjct 4608 LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTAERLCLFDRYFKYWDQTYHPNCIN 4667 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4668 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4727 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4728 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4787 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4788 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4847 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4848 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4907 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4908 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4967 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA Sbjct 4968 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA 5027 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5028 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5087 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5088 RNLQHRLYECLYRNRDVDHEFVGEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5147 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5148 NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5207 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5208 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5267 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5268 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5299 >sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 1906 bits (4937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 894/932 (96%), Positives = 915/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN++VAGFAKFLKTNCCRFQEKD Sbjct 4376 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKD 4435 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4436 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLT 4495 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4496 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4555 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4556 RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4615 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLT+AL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4616 LMPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4675 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4676 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4735 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4736 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4795 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4796 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4855 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQD LFAYTKRNVIPTIT Sbjct 4856 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTIT 4915 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4916 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4975 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA Sbjct 4976 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA 5035 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5036 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5095 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5096 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5155 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+V YYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5156 NFKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5215 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5216 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5275 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5276 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5307 >sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 1904 bits (4933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 891/932 (96%), Positives = 918/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4364 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4423 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4424 EEGNLLDSYFVVKRHTMSNYQHEETIYNLIKECPAVAVHDFFKFRVDGDMVPHISRQRLT 4483 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD+YFNKKDWYDFVENPD+LRVYANLGE Sbjct 4484 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDNYFNKKDWYDFVENPDVLRVYANLGE 4543 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVR+ALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4544 RVRRALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4603 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLT+AL AESH+D DL KP +KWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4604 LMPILTLTKALAAESHMDADLAKPLVKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4663 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4664 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4723 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4724 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4783 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4784 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4843 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4844 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4903 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4904 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4963 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE+PHLMGWDYPKCDRAMPNMLRIMASL+LARKH+TCC+LSHRFYRLANECA Sbjct 4964 MLKTVYSDVESPHLMGWDYPKCDRAMPNMLRIMASLILARKHSTCCNLSHRFYRLANECA 5023 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5024 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5083 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5084 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5143 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLT+GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5144 NFKAVLYYQNNVFMSEAKCWTETDLTRGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5203 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5204 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5263 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5264 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5295 >sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 1451 bits (3755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 676/932 (73%), Positives = 770/932 (83%), Gaps = 1/932 (0%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 A + FLNRV G S ARL P G+G D+V RAFDI N KVAGF LK NCCR+QE D Sbjct 4234 ARDECFLNRVRGTSGVARLVPLGSGVQPDIVLRAFDICNTKVAGFGLHLKNNCCRYQELD 4293 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 D +DSYFVVKRHT SNY E+ Y LKDC VA+HDFFKF I+G M PH+SR+RLT Sbjct 4294 ADGTQLDSYFVVKRHTESNYLLEQRCYEKLKDCGVVARHDFFKFNIEGVMTPHVSRERLT 4353 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVY+LRHFD NCDTLKEILV CC DYF++KDWYD VENPDI+RVY NLGE Sbjct 4354 KYTMADLVYSLRHFDNNNCDTLKEILVLRGCCTADYFDRKDWYDPVENPDIIRVYHNLGE 4413 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 VR+A+L V+ D+M G++GVLTLDNQDLNG WYDFGDFI+ G+GV V+D+YYSL Sbjct 4414 TVRKAVLSAVKMADSMVEQGLIGVLTLDNQDLNGQWYDFGDFIEGPAGAGVAVMDTYYSL 4473 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 MP+ T+T L AE HVD D +KP WD+ KYD+T+ + LF +YFKYWD YHPNCV Sbjct 4474 AMPVYTMTNMLAAECHVDGDFSKPKRVWDICKYDYTQFKYSLFSKYFKYWDMQYHPNCVA 4533 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCILHCANFN+LFS V P TSFGPLV+KI+VDGVPFVVSTGYH+RELGVV NQD+ Sbjct 4534 CADDRCILHCANFNILFSMVLPNTSFGPLVQKIYVDGVPFVVSTGYHYRELGVVMNQDIR 4593 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H+ RLS +ELLVYAADPAMH A+ N L DKRT C SVAA+T V FQTVKPG FN+DFY Sbjct 4594 QHAQRLSLRELLVYAADPAMHVAASNALADKRTVCMSVAAMTTGVTFQTVKPGQFNEDFY 4653 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +FAV GFFKEGS++ KHFF+AQDGNAAISDYDYYRYNLPTMCDI+QLLF +EVVDKYF Sbjct 4654 NFAVKCGFFKEGSTISFKHFFYAQDGNAAISDYDYYRYNLPTMCDIKQLLFSLEVVDKYF 4713 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGC+ A+QV+V N DKSAGFPFNK+GKARLYY+S+SY DQD LFAYTKRNV+PTIT Sbjct 4714 DCYDGGCLQASQVVVANYDKSAGFPFNKFGKARLYYESLSYADQDELFAYTKRNVLPTIT 4773 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSIAA RGA+VVIGT+KFYGGW+ Sbjct 4774 QMNLKYAISAKNRARTVAGVSIASTMTNRQFHQKMLKSIAAARGASVVIGTTKFYGGWNR 4833 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+T+ VENPHLMGWDYPKCDRAMPN+LRI ASL+LARKH TCC+ S RFYRLANECA Sbjct 4834 MLRTLCEGVENPHLMGWDYPKCDRAMPNLLRIFASLILARKHATCCNASERFYRLANECA 4893 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMV+CGG YVKPGGTSSGD+TTAYANSVFNICQAV+AN+N LS DGNKI YV Sbjct 4894 QVLSEMVLCGGGFYVKPGGTSSGDSTTAYANSVFNICQAVSANLNTFLSIDGNKIYTTYV 4953 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 + LQ RLY +YR+ VD + V ++Y YLRKHFSMMILSDD VVC+N+ YA +G VA I+ Sbjct 4954 QELQRRLYLGIYRSNTVDNELVLDYYNYLRKHFSMMILSDDGVVCYNADYAQKGYVADIQ 5013 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 FK +LY+QNNVFMSE+KCW E D+TKGPHEFCSQHTMLV + VYLPYPDPSRILGA Sbjct 5014 GFKELLYFQNNVFMSESKCWVEPDITKGPHEFCSQHTMLVDMKGEQVYLPYPDPSRILGA 5073 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTDGTLM+ER+VSLAIDAYPLTKHP+ EY +VF YLQYI+KLH+ELTGH+L Sbjct 5074 GCFVDDLLKTDGTLMMERYVSLAIDAYPLTKHPDPEYQNVFWCYLQYIKKLHEELTGHLL 5133 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSVML +DN S+YWE EFYE MY LQ Sbjct 5134 DTYSVMLASDNASKYWEVEFYENMYMESATLQ 5165 >sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 1423 bits (3684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 659/931 (71%), Positives = 776/931 (83%), Gaps = 3/931 (0%) Query 5 QSFLNRVCG-VSAARLTPCGTGTSTDVVYRAFDI--YNDKVAGFAKFLKTNCCRFQEKDE 61 +FLNRV G + AR+ PC +G +TDVV+RAFDI Y KVAG K+ KTN CRF E D+ Sbjct 4471 SNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVEVDD 4530 Query 62 DDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTK 121 + + +DS+FVVKRHT NY+ E+ Y+L+KDC AVA HDFF F +D PHI RQRLT+ Sbjct 4531 EGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQRLTE 4590 Query 122 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 181 YTM DLVYALRHFD+ NC+ LK ILV Y CCD YF+ K W+DFVENP+++ VY LGER Sbjct 4591 YTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKLGER 4650 Query 182 VRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLL 241 +RQA+L TV+FCD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYYS L Sbjct 4651 IRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYL 4710 Query 242 MPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNC 301 MP+L++T L AE+H D DLTKP I+W LL+YD+T+ ++ LF++YFK WDQ YHPNCVNC Sbjct 4711 MPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNCVNC 4770 Query 302 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 361 DDRC+LHCANFNVLFS P TSFGP+VRKIFVDGVPFV+S GYH++ELG+V N DV+L Sbjct 4771 TDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMDVSL 4830 Query 362 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 421 H RLS KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYD Sbjct 4831 HRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYD 4890 Query 422 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 481 F VSKGFFKEGSSV L+HFFFAQDG+AAI+DY YY YNLPTMCDI+Q+LF +EVVD+YF+ Sbjct 4891 FVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDRYFE 4950 Query 482 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ 541 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+S+SY++QD LFA TKRNV+PTITQ Sbjct 4951 IYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPTITQ 5010 Query 542 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 601 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRG+T VIGT+KFYGGW M Sbjct 5011 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGWDFM 5070 Query 602 LKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ 661 LKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH+TCC+ + RFYRLANECAQ Sbjct 5071 LKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANECAQ 5130 Query 662 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 721 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GN I D+ V+ Sbjct 5131 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDEEVK 5190 Query 722 NLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKN 781 ++Q LY +YR D FV+ +YA+L KHFSMMILSDD VVC+NS YA++G +ASI+N Sbjct 5191 DMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIASIQN 5250 Query 782 FKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 841 FK LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5251 FKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRILSAG 5310 Query 842 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 901 CFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5311 CFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGHMLD 5370 Query 902 MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 YSVML DN++++WE FY +YT T LQ Sbjct 5371 SYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ 5401 >sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 1413 bits (3657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 663/931 (71%), Positives = 771/931 (83%), Gaps = 4/931 (0%) Query 5 QSFLNRVCG-VSAARLTPCGTGTSTDVVYRAFDI--YNDKVAGFAKFLKTNCCRFQEKDE 61 +FL RV G + AR+ PC +G STDVV+RAFDI Y KVAG K+ KTN CRF E D+ Sbjct 4381 SNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVELDD 4440 Query 62 DDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTK 121 + +DSYFVVKRHT NY+ E+ Y+LL+DC AVA HDFF F +D PHI RQRLT+ Sbjct 4441 QGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQRLTE 4500 Query 122 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 181 YTM DLVYALRHFD+ N + LK ILV Y CCD YF K W+DFVENP ++ VY LGER Sbjct 4501 YTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKLGER 4559 Query 182 VRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLL 241 VRQA+L TV+FCD M AG+VGVLTLDNQDLNG WYDFGDF+ T PGSGV +VDSYYS L Sbjct 4560 VRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYYSYL 4619 Query 242 MPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNC 301 MP+L++T L AE+H D D KP I+W L +YDFT+ +++LF++YFKYWDQTYH NCVNC Sbjct 4620 MPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANCVNC 4679 Query 302 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 361 DDRC+LHCANFNVLF+ P T FGP+VRKIFVDGVPFVVS GYH++ELG+V N DV+L Sbjct 4680 TDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMDVSL 4739 Query 362 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 421 H RLS KEL++YAADPAMH AS N LD RT+CFSVAALT + FQTV+PGNFN+DFYD Sbjct 4740 HRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQDFYD 4799 Query 422 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 481 F VSKGFFKEGSSV LKHFFFAQDGNAAI+DY+YY YNLPTMCDI+Q+LF +EVV+KYF+ Sbjct 4800 FVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNKYFE 4859 Query 482 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ 541 YDGGC+NA++V+VNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNVIPT+TQ Sbjct 4860 IYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPTMTQ 4919 Query 542 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 601 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW M Sbjct 4920 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM 4979 Query 602 LKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQ 661 LKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH TCC+ RFYRLANECAQ Sbjct 4980 LKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANECAQ 5039 Query 662 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 721 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GNKI DK V+ Sbjct 5040 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDKEVK 5099 Query 722 NLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKN 781 ++Q LY +YR+ D FV+++YA+L KHFSMMILSDD VVC+NS YA++G +A I+N Sbjct 5100 DMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAGIQN 5159 Query 782 FKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 841 FK LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5160 FKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG 5219 Query 842 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 901 CFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5220 CFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGHMLD 5279 Query 902 MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 YSVML DN++++WE FY +Y+ T LQ Sbjct 5280 SYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQ 5310 >sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 1411 bits (3653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 660/930 (71%), Positives = 776/930 (83%), Gaps = 3/930 (0%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQEKDED 62 +FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + D++ Sbjct 4425 NFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDDE 4484 Query 63 DNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKY 122 + +DSYF+VKRHT SNY+ E+ Y+LLKDC AVA HDFF F +D PHI RQ LT+Y Sbjct 4485 GHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTEY 4544 Query 123 TMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERV 182 TM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY LGER+ Sbjct 4545 TMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGERI 4604 Query 183 RQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLM 242 RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYYS LM Sbjct 4605 RQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYLM 4664 Query 243 PILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 P+L++T L AE+H D D KP I+W LL+YD+T+ ++ LF++YFKYWDQTYHPNCVNC Sbjct 4665 PVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNCVNCS 4724 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D N+H Sbjct 4725 DDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDFNIH 4784 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYDF Sbjct 4785 RHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYDF 4844 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD Sbjct 4845 VVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFDI 4904 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQM Sbjct 4905 YDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQM 4964 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW ML Sbjct 4965 NLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFML 5024 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 KT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANECAQV Sbjct 5025 KTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQV 5084 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 LSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ +++ Sbjct 5085 LSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIKD 5144 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 +Q LY +YR D FV+++YA+L KHFSMMILSDD VVC+NS YA++G VASI+NF Sbjct 5145 MQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNF 5204 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AGC Sbjct 5205 KETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGC 5264 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5265 FVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLDS 5324 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 YSVML D+++++WE FY +Y+ T LQ Sbjct 5325 YSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5354 >sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 1410 bits (3650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 660/930 (71%), Positives = 777/930 (84%), Gaps = 3/930 (0%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQEKDED 62 +FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + D++ Sbjct 4432 NFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDDE 4491 Query 63 DNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKY 122 + +DSYF+VKRHT SNY+ E+ Y+LLKDC AVA HDFF F +D PHI RQ LT+Y Sbjct 4492 GHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTEY 4551 Query 123 TMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERV 182 TM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY LGER+ Sbjct 4552 TMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGERI 4611 Query 183 RQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLM 242 RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYYS LM Sbjct 4612 RQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYLM 4671 Query 243 PILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 P+L++T L AE+H D D KP I+W LL+YD+T+ ++ LF++YFK+WDQTYHPNCVNC Sbjct 4672 PVLSMTNCLAAETHKDCDFNKPLIEWLLLEYDYTDYKIGLFNKYFKHWDQTYHPNCVNCG 4731 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N DVN+H Sbjct 4732 DDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDVNIH 4791 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYDF Sbjct 4792 RHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYDF 4851 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD Sbjct 4852 VVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFDI 4911 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQM Sbjct 4912 YDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQM 4971 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW ML Sbjct 4972 NLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFML 5031 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 KT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANECAQV Sbjct 5032 KTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQV 5091 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 LSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ +++ Sbjct 5092 LSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIKD 5151 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 +Q LY +YR D FV+++YA+L KHFSMMILSDD VVC+NS YA++G VASI+NF Sbjct 5152 MQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNF 5211 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AGC Sbjct 5212 KETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGC 5271 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5272 FVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLDS 5331 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 YSVML D+++++WE FY +Y+ T LQ Sbjct 5332 YSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5361 >sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 1308 bits (3384), Expect = 0.0, Method: Compositional matrix adjust. Identities = 618/928 (67%), Positives = 740/928 (80%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G TDV RAFDI N AG + K NCCRFQ DED N Sbjct 4407 NFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRADEDGN 4466 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FV+KR Y E+ Y L K+C VA+H+FF F ++G VPHI R+ L+KYTM Sbjct 4467 TLDKFFVIKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLSKYTM 4526 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C TLKEIL+TY CD+ YF KKDWYDFVEN DI+ VY LG + Sbjct 4527 LDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENSDIINVYKKLGPIFNR 4586 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL T +F D + AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS +MP+ Sbjct 4587 ALLNTAKFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSYMMPM 4646 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL +E ++ Y ++DL++YDFT+ +L+LF++YFKYW TYHPN C DD Sbjct 4647 LTMCHALDSELFIN----GTYREFDLVQYDFTDFKLELFNKYFKYWSMTYHPNTCECEDD 4702 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4703 RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY 4762 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F + Sbjct 4763 RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL 4822 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF+ YD Sbjct 4823 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYFEIYD 4882 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4883 GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEVYAYTKRNVLPTLTQMNL 4942 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4943 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 5002 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLS Sbjct 5003 LIKDVDSPVLMGWDYPKCDRAMPNILRIISSLVLARKHDSCCSHTDRFYRLANECAQVLS 5062 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ Sbjct 5063 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ 5122 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I F+ Sbjct 5123 KRLYSNVYRADHVDPAFVNEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQ 5182 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5183 VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV 5242 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +LD YS Sbjct 5243 DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSYS 5302 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5303 VILSTCDGQKFTDETFYKNMYLRSAVMQ 5330 >sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 1306 bits (3379), Expect = 0.0, Method: Compositional matrix adjust. Identities = 617/928 (66%), Positives = 741/928 (80%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNR+ G S ARL PC +G TDV RAFDI N AG + K NCCRFQ DED N Sbjct 4459 NFLNRIRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRVDEDGN 4518 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR Y E+ Y L K+C VA+H+FF F ++G VPHI R+ L+K+TM Sbjct 4519 KLDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLSKFTM 4578 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C TLKEIL+TY C++ YF KKDWYDFVENPDI+ VY LG + Sbjct 4579 LDLCYALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKLGPIFNR 4638 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL T +F DA+ AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS +MP+ Sbjct 4639 ALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSYMMPM 4698 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL +E V+ Y ++DL++YDFT+ +L+LF +YFK+W TYHPN C DD Sbjct 4699 LTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFTKYFKHWSMTYHPNTCECEDD 4754 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4755 RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY 4814 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F + Sbjct 4815 RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL 4874 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF+ Y+ Sbjct 4875 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYFEIYE 4934 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4935 GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4994 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4995 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 5054 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLS Sbjct 5055 LIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLS 5114 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ Sbjct 5115 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ 5174 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FV+E+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I F+ Sbjct 5175 KRLYSNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQ 5234 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5235 VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV 5294 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +LD YS Sbjct 5295 DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSYS 5354 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY VLQ Sbjct 5355 VILSTCDGQKFTDETFYKNMYLRSAVLQ 5382 >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 1300 bits (3365), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/928 (67%), Positives = 735/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D+D N Sbjct 4462 NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN 4521 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+KYTM Sbjct 4522 KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLSKYTM 4581 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG + Sbjct 4582 LDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR 4641 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS +MP+ Sbjct 4642 ALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM 4701 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+C +D Sbjct 4702 LTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 4757 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4758 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 4817 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F Sbjct 4818 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 4877 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4878 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4937 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL Sbjct 4938 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 4997 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4998 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 5057 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECAQVLS Sbjct 5058 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 5117 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5118 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 5177 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5178 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 5237 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFV Sbjct 5238 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 5297 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5298 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGTQILDSYS 5357 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ E FY+ MY V+Q Sbjct 5358 VILSTCDGLKFTEESFYKNMYLKSAVMQ 5385 >sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 1299 bits (3362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 622/928 (67%), Positives = 735/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D+D N Sbjct 4412 NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN 4471 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+KYTM Sbjct 4472 KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLSKYTM 4531 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG + Sbjct 4532 LDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR 4591 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS +MP+ Sbjct 4592 ALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM 4651 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+C +D Sbjct 4652 LTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 4707 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4708 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 4767 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F Sbjct 4768 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 4827 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4828 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4887 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL Sbjct 4888 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 4947 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4948 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 5007 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECAQVLS Sbjct 5008 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 5067 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5068 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 5127 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YA++G +A+I F+ Sbjct 5128 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANKGYIANISAFQQ 5187 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFV Sbjct 5188 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 5247 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5248 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGTQILDSYS 5307 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ E FY+ MY V+Q Sbjct 5308 VILSTCDGLKFTEESFYKNMYLKSAVMQ 5335 >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 1299 bits (3361), Expect = 0.0, Method: Compositional matrix adjust. Identities = 622/928 (67%), Positives = 735/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D+D N Sbjct 4432 NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN 4491 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+KYTM Sbjct 4492 KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTM 4551 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG + Sbjct 4552 LDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR 4611 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS +MP+ Sbjct 4612 ALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM 4671 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+C +D Sbjct 4672 LTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 4727 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4728 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 4787 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F Sbjct 4788 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 4847 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4848 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4907 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL Sbjct 4908 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 4967 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4968 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 5027 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECAQVLS Sbjct 5028 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 5087 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5088 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 5147 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5148 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 5207 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFV Sbjct 5208 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 5267 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5268 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 5327 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5328 VILSTCDGLKFTDESFYKNMYLKSAVMQ 5355 >sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 1296 bits (3354), Expect = 0.0, Method: Compositional matrix adjust. Identities = 615/928 (66%), Positives = 733/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDIYN VAG LK NCCRFQ DE+ + Sbjct 4374 NFLNRVRGASVDARLVPCASGLSTDVQLRAFDIYNASVAGIGLHLKVNCCRFQRVDENGD 4433 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LTKYTM Sbjct 4434 KLDQFFVVKRTDLTIYNREMKCYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM 4493 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4494 LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR 4553 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 AL+ +F D + G+VGVLTLDNQDLNG WYDFGD++ PG GV + DSYYS +MP+ Sbjct 4554 ALVSATEFADKLVEVGLVGVLTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYIMPM 4613 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+C DD Sbjct 4614 LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF + Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFVL 4789 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH TCCS S RFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHETCCSQSDRFYRLANECAQVLS 5029 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D +R LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5090 KRLYSHVYRSDKVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYP+PSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVEHDINNGPHEFCSQHTMLVKMDGDDVYLPYPNPSRILGAGCFV 5209 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL YI+KL+++L +LD YS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLAYIKKLYNDLGNQILDSYS 5269 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 1294 bits (3348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 613/928 (66%), Positives = 732/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ DE+ + Sbjct 4374 NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD 4433 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LTKYTM Sbjct 4434 KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM 4493 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4494 LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR 4553 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS +MP+ Sbjct 4554 ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM 4613 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+C DD Sbjct 4614 LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF + Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS 5029 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D +R LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV 5209 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 5269 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 1294 bits (3348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 613/928 (66%), Positives = 732/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ DE+ + Sbjct 4374 NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD 4433 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LTKYTM Sbjct 4434 KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM 4493 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4494 LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR 4553 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS +MP+ Sbjct 4554 ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM 4613 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+C DD Sbjct 4614 LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF + Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS 5029 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D +R LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV 5209 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 5269 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 1292 bits (3344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 613/928 (66%), Positives = 737/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G TDV RAFDI N AG + K NC RFQ DE+ N Sbjct 4465 NFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCFRFQRVDEEGN 4524 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR Y E+ Y L KDC VA+H+FF F ++G VPHI R+ L+K+TM Sbjct 4525 KLDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKDLSKFTM 4584 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C TLKEIL+TY CD+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4585 LDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKLGPIFNR 4644 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 ALL T F D + AG+VGVLTLDNQDL G WYDFGDF++T P GV V DSYYS +MP+ Sbjct 4645 ALLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYYSYMMPM 4704 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL +E V+ Y ++DL++YDFT+ +L+LF++YFK+W TYHPN C DD Sbjct 4705 LTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFNKYFKHWSMTYHPNTSECEDD 4760 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4761 RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY 4820 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F + Sbjct 4821 RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL 4880 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFVVEVV+KYF+ Y+ Sbjct 4881 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNKYFEIYE 4940 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4941 GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 5000 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 5001 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 5060 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECAQVL Sbjct 5061 LIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLG 5120 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ Sbjct 5121 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ 5180 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR VD FV+E+Y +L KHFSM+ILSDD VVC+NS +AS+G +A+I +F+ Sbjct 5181 KRLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIANISDFQQ 5240 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5241 VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV 5300 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +LD S Sbjct 5301 DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSIS 5360 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5361 VILSTCDGQKFTDETFYKNMYLRSAVMQ 5388 >sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 1290 bits (3339), Expect = 0.0, Method: Compositional matrix adjust. Identities = 613/928 (66%), Positives = 730/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ DE+ + Sbjct 4374 NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD 4433 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LTKYTM Sbjct 4434 KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM 4493 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4494 LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR 4553 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS +MP+ Sbjct 4554 ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM 4613 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+C DD Sbjct 4614 LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF + Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4850 GGCIPAAQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS 5029 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D +R LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYP PSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPVPSRILGAGCFV 5209 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL++EL +LD YS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQILDSYS 5269 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 1287 bits (3331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 612/928 (66%), Positives = 730/928 (79%), Gaps = 5/928 (1%) Query 6 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ DE+ + Sbjct 4374 NFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVDENGD 4433 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LTKYTM Sbjct 4434 KLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLTKYTM 4493 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG + Sbjct 4494 LDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGPIFNR 4553 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS +MP+ Sbjct 4554 ALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSYMMPM 4613 Query 245 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+C DD Sbjct 4614 LTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 RCI+ CANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ H Sbjct 4670 RCIIRCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFYDF + Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANE AQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEYAQVLS 5029 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D +R LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV 5209 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL++EL +LD YS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQILDSYS 5269 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V+L+ + ++ + FY+ MY V+Q Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=rep PE=3 SV=1 Length=6629 Score = 1186 bits (3068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/936 (62%), Positives = 707/936 (76%), Gaps = 13/936 (1%) Query 5 QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE--KDED 62 +++LNRV G S ARL P +G DVV RAFD+ N + AG + LK NC RFQE ED Sbjct 3938 KNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTED 3997 Query 63 DNL--IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 NL +DSYFVVK+ T SNY+HE++ Y LK A HDFF F + + +ISRQRLT Sbjct 3998 GNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRLT 4053 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFNK-KDWYDFVENPDILRVYA 176 KYTM D YALRHFD +C+ LKEILVTY C +D +F + KDWYD +EN + A Sbjct 4054 KYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVMLA 4113 Query 177 NLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDS 236 +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D+ Sbjct 4114 KMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDT 4173 Query 237 YYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHP 296 YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ +LF +YFKYWDQ YHP Sbjct 4174 YYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYHP 4233 Query 297 NCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHN 356 NC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ N Sbjct 4234 NCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMN 4293 Query 357 QDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFN 416 QD + S++ +L+ + DPA+ + N L+D RT+CFSV ALT+ + QTVKPG+FN Sbjct 4294 QDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHFN 4353 Query 417 KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV 476 KDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV Sbjct 4354 KDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEVT 4413 Query 477 DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI 536 KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK+NV+ Sbjct 4414 SKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNVL 4472 Query 537 PTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG 596 PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A+VVIGT+KFYG Sbjct 4473 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFYG 4532 Query 597 GWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 GW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL Sbjct 4533 GWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRLY 4592 Query 657 NECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS I Sbjct 4593 NECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIV 4652 Query 717 DKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A QGLV Sbjct 4653 YDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLV 4712 Query 777 ASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSR 836 A I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYPDPSR Sbjct 4713 ADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPSR 4772 Query 837 ILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELT 896 ILGA FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ EL+ Sbjct 4773 ILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQELS 4832 Query 897 GHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4833 QNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 SV=1 Length=6629 Score = 1186 bits (3068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/936 (62%), Positives = 707/936 (76%), Gaps = 13/936 (1%) Query 5 QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE--KDED 62 +++LNRV G S ARL P +G DVV RAFD+ N + AG + LK NC RFQE ED Sbjct 3938 KNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTED 3997 Query 63 DNL--IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 NL +DSYFVVK+ T SNY+HE++ Y LK A HDFF F + + +ISRQRLT Sbjct 3998 GNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRLT 4053 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFNK-KDWYDFVENPDILRVYA 176 KYTM D YALRHFD +C+ LKEILVTY C +D +F + KDWYD +EN + A Sbjct 4054 KYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVMLA 4113 Query 177 NLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDS 236 +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D+ Sbjct 4114 KMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDT 4173 Query 237 YYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHP 296 YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ +LF +YFKYWDQ YHP Sbjct 4174 YYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYHP 4233 Query 297 NCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHN 356 NC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ N Sbjct 4234 NCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMN 4293 Query 357 QDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFN 416 QD + S++ +L+ + DPA+ + N L+D RT+CFSV ALT+ + QTVKPG+FN Sbjct 4294 QDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHFN 4353 Query 417 KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV 476 KDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV Sbjct 4354 KDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEVT 4413 Query 477 DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI 536 KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK+NV+ Sbjct 4414 SKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNVL 4472 Query 537 PTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG 596 PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A+VVIGT+KFYG Sbjct 4473 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFYG 4532 Query 597 GWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 GW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL Sbjct 4533 GWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRLY 4592 Query 657 NECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS I Sbjct 4593 NECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIV 4652 Query 717 DKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A QGLV Sbjct 4653 YDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLV 4712 Query 777 ASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSR 836 A I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYPDPSR Sbjct 4713 ADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPSR 4772 Query 837 ILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELT 896 ILGA FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ EL+ Sbjct 4773 ILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQELS 4832 Query 897 GHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4833 QNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 1184 bits (3063), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/929 (60%), Positives = 707/929 (76%), Gaps = 6/929 (1%) Query 5 QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 +LNRV G SAARL P G+ T V+RAFD+YN VA +KFLK NC R + D+ D Sbjct 4115 SGYLNRVRGSSAARLEPL-NGSDTHHVFRAFDVYNRDVACISKFLKVNCVRLKNLDKHD- 4172 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 ++++VK+ T S +HE++IYNL+ DC AVAKHDFF ++ + ++ RQ LT+YTM Sbjct 4173 ---AFWIVKKCTKSVMEHEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQDLTEYTM 4229 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YALR+FDE NC+TLK+ILV CD+ YF+ K W+D VEN D+ RVYA LG V + Sbjct 4230 MDLCYALRNFDENNCETLKKILVVVGACDESYFDNKLWFDPVENEDVHRVYAKLGTIVAR 4289 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 A+LK V++CDAM GIVGV+TLDNQDLNG++YDFGDF+ + G GVP+ SYYS +MP+ Sbjct 4290 AMLKCVKYCDAMVEQGIVGVITLDNQDLNGDFYDFGDFVTSVKGMGVPICTSYYSYMMPV 4349 Query 245 LTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD 303 + +T L +E + +D+ + + +DLL YDFTE ++ LF++YFK+W QTYHPNC +C D Sbjct 4350 MGMTNCLASECFIKSDIFGEDFRTFDLLAYDFTEHKVNLFNKYFKHWGQTYHPNCEDCHD 4409 Query 304 DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS 363 + CI+HCANFN LF+T P T+FGPL RK ++DGVP V + GYHF++LG+V N+D+NLHS Sbjct 4410 ESCIVHCANFNTLFATTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNKDLNLHS 4469 Query 364 SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFA 423 SRL+ ELL + ADP++ AS L+DKRT CFSVAAL + QTVKPG+FN++FYDF Sbjct 4470 SRLTINELLQFCADPSLLIASSPALVDKRTVCFSVAALGTGMTNQTVKPGHFNREFYDFL 4529 Query 424 VSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCY 483 S+GFF+EGS + LKHFFFAQ G+AA+ D+DYYRYN T+ DI Q V ++V YF Y Sbjct 4530 RSQGFFEEGSELTLKHFFFAQKGDAAVRDFDYYRYNRTTVLDICQARVVYQIVQCYFGMY 4589 Query 484 DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN 543 +GGCI A +VIVNNL+KSAG+PFNK+GKA LYYDS+SYE+QD L+AYTKRN+IPT+TQ+N Sbjct 4590 EGGCITAKEVIVNNLNKSAGYPFNKFGKAGLYYDSLSYEEQDDLYAYTKRNIIPTMTQLN 4649 Query 544 LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK 603 LKYAIS K+RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NMLK Sbjct 4650 LKYAISGKDRARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLK 4709 Query 604 TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL 663 T+ DVENPHLMGWDYPKCDRA+PNM+R++++++L KH CCS S R+YRL NE AQVL Sbjct 4710 TLIKDVENPHLMGWDYPKCDRALPNMIRMISAMILGSKHVNCCSSSDRYYRLCNELAQVL 4769 Query 664 SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL 723 +EMV G YVKPGGT+SGDATTAYANSVFNI QA +ANVN LLS D N + V+ L Sbjct 4770 TEMVYSNGGFYVKPGGTTSGDATTAYANSVFNIFQATSANVNRLLSVDSNTCNNIEVKQL 4829 Query 724 QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFK 783 Q +LY+C YR+ VD FV E++ YLRKHFSMMILSDD VVC+NS YA+ G VA + FK Sbjct 4830 QRKLYDCCYRSSSVDQSFVEEYFGYLRKHFSMMILSDDGVVCYNSEYAALGYVADLNAFK 4889 Query 784 SVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCF 843 +VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + D YLPYPDPSRIL AG F Sbjct 4890 AVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVF 4949 Query 844 VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY 903 VDDIVKTD +++ER+VSLAIDAYPL+KH N EY VF + L +++ L+ L +LD + Sbjct 4950 VDDIVKTDPVILLERYVSLAIDAYPLSKHDNPEYRRVFTVMLDWVKHLYKTLNQGVLDSF 5009 Query 904 SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 SV L D T+++W+ FY +MY +VLQ Sbjct 5010 SVTLLEDATAKFWDESFYASMYEQSSVLQ 5038 >sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1 Length=6631 Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 581/936 (62%), Positives = 702/936 (75%), Gaps = 13/936 (1%) Query 5 QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE--KDED 62 +++LNRV G S ARL P G DVV RAFD+ N + AG + LK NC RFQE ED Sbjct 3940 KNYLNRVRGSSEARLIPLANGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQEVRDTED 3999 Query 63 DNL--IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 NL DSYFVVK+ T SNY+HE+ Y LK A HDFF F + + +ISRQRLT Sbjct 4000 GNLEYCDSYFVVKQTTPSNYEHEKACYEDLKS-EVTADHDFFVFNKN---IYNISRQRLT 4055 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFNK-KDWYDFVENPDILRVYA 176 KYTM D YALRHFD +C+ LKEILVTY C +D +F + KDWYD +ENP + A Sbjct 4056 KYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENPKYYAMLA 4115 Query 177 NLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDS 236 +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D+ Sbjct 4116 KMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFDT 4175 Query 237 YYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHP 296 YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ LF +YFKYWDQ YHP Sbjct 4176 YYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQDLFQKYFKYWDQEYHP 4235 Query 297 NCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHN 356 NC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ N Sbjct 4236 NCRDCSDDRCLIHCANFNILFSTLVPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIMN 4295 Query 357 QDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFN 416 QD + S++ +L+ + DPA+ + N L+D RT+CFSV AL + + QTVKPG+FN Sbjct 4296 QDNTMSFSKMGLSQLMQFVGDPALLVGTSNKLVDLRTSCFSVCALASGITHQTVKPGHFN 4355 Query 417 KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV 476 KDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DIRQLLF +EV Sbjct 4356 KDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDIRQLLFCLEVT 4415 Query 477 DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVI 536 KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK+NV+ Sbjct 4416 SKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFESTKKNVL 4474 Query 537 PTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG 596 PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A VVIGT+KFYG Sbjct 4475 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNAPVVIGTTKFYG 4534 Query 597 GWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 GW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CC+ S R YRL Sbjct 4535 GWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCTWSERVYRLY 4594 Query 657 NECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS I Sbjct 4595 NECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDIV 4654 Query 717 DKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLV 776 +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A QGLV Sbjct 4655 YDDIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGLV 4714 Query 777 ASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSR 836 A I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYPDPSR Sbjct 4715 ADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPRYLPYPDPSR 4774 Query 837 ILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELT 896 IL A FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ EL+ Sbjct 4775 ILCACVFVDDLDKTESVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLSYIRKLYQELS 4834 Query 897 GHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4835 QNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4870 >sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/928 (60%), Positives = 701/928 (76%), Gaps = 6/928 (1%) Query 6 SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNL 65 ++LNRV G SAARL PC GT T VYRAFDIYN VA KFLK NC R + D+ D Sbjct 4105 AYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKHD-- 4161 Query 66 IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMA 125 +++VVKR T S +HE++IY+ L+ C A+A+HDFF ++ + ++ R+ LT+YTM Sbjct 4162 --AFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMM 4219 Query 126 DLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQA 185 DL YALR+FDE NCD LK IL+ C++ YFN K W+D VEN DI RVYA LG V +A Sbjct 4220 DLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARA 4279 Query 186 LLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPIL 245 +LK V+FCDAM GIVGV+TLDNQDLNG++YDFGDF + G GVP+ SYYS +MP++ Sbjct 4280 MLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVM 4339 Query 246 TLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 +T L +E V +D+ + + +DLL+YDFTE + LF++YFKYW YHPNCV+C D+ Sbjct 4340 GMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDE 4399 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 +CI+HCANFN LFST P T+FGPL RK ++DGVP V + GYHF++LG+V N D+NLHSS Sbjct 4400 QCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSS 4459 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RLS ELL + +DPA+ AS L+D+RT CFSVAAL + QTVKPG+FNK+FYDF + Sbjct 4460 RLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLL 4519 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 +GFF EGS + LKHFFFAQ +AA+ D+DYYRYN PT+ DI Q V ++V +YFD Y+ Sbjct 4520 EQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYE 4579 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+TQ+NL Sbjct 4580 GGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNL 4639 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAIS K RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NMLK Sbjct 4640 KYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKN 4699 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + VENP LMGWDYPKCDRA+PNM+R++++++L KHTTCCS + RF+RL NE AQVL+ Sbjct 4700 LIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLT 4759 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+V G Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N + V+ LQ Sbjct 4760 EVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQ 4819 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 +LYEC YR+ VD FV E+Y YLRKHFSMMILSDD VVC+N+ YAS G VA + FK+ Sbjct 4820 RKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKA 4879 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + + YLPYPDPSRIL AG FV Sbjct 4880 VLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFV 4939 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DD+VKTD +++ER+VSLAIDAYPL+KH N EY VF++ L +++ L+ L +L+ +S Sbjct 4940 DDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFS 4999 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V L D+T+++W+ FY MY VLQ Sbjct 5000 VTLLEDSTAKFWDESFYANMYEKSAVLQ 5027 >sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 1163 bits (3009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/928 (59%), Positives = 697/928 (75%), Gaps = 6/928 (1%) Query 6 SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNL 65 S+LNRV G SAARL PC GT D RAFD+YN + K LK+NC RF+ D+DD Sbjct 4073 SYLNRVRGSSAARLEPC-NGTDIDYCVRAFDVYNKDASFIGKNLKSNCVRFKNVDKDD-- 4129 Query 66 IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMA 125 ++++VKR S HE+++YNLLK C AVAKHDFF + + ++SRQ LTKYTM Sbjct 4130 --AFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQDLTKYTMM 4187 Query 126 DLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQA 185 DL +ALR+FDE +C+ KEILV CC DYF K+W+D +EN DI RVYA LG+ V A Sbjct 4188 DLCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAALGKVVANA 4247 Query 186 LLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPIL 245 +LK V FCD M G+VGVLTLDNQDLNGN+YDFGDF+ PG G+P SYYS +MP++ Sbjct 4248 MLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYYSYMMPVM 4307 Query 246 TLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 304 +T L +E + +D+ + + +DLLKYDFTE + LF++YFKYW Q YHP+CV+C D+ Sbjct 4308 GMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPDCVDCHDE 4367 Query 305 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 364 CILHC+NFN LF+T P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN HS+ Sbjct 4368 MCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNKDVNTHST 4427 Query 365 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 424 RL+ ELL + DP + AS L+DKRT CFSVAAL+ + QTVKPG+FNK+FYDF Sbjct 4428 RLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNKEFYDFLR 4487 Query 425 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 484 S+GFF EGS + LKHFFF Q G+AAI D+DYYRYN PTM DI Q +V +YFDCY+ Sbjct 4488 SQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAARYFDCYE 4547 Query 485 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 544 GGCI + +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDA+F+ TKRN++PT+TQ+NL Sbjct 4548 GGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILPTMTQLNL 4607 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 604 KYAIS K RARTV GVS+ +TMT RQFHQK LKSI ATR ATVVIGT+KFYGGW NMLK Sbjct 4608 KYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGGWDNMLKN 4667 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 + +DV++P LMGWDYPKCDRAMP+M+R++++++L KH TCC+ S +FYRL+NE AQVL+ Sbjct 4668 LMADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSNELAQVLT 4727 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 E+V G Y KPGGT+SGDATTAYANSVFNI QAV++N+N +LS + + + V+ LQ Sbjct 4728 EVVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNNFNVKKLQ 4787 Query 725 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 784 +LY+ YRN +VD FV++FY YL+KHFSMMILSDD+VVC+N TYA G +A I FK+ Sbjct 4788 RQLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIADISAFKA 4847 Query 785 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 844 LYYQN VFMS AKCWTE DL+ GPHEFCSQHTM + + YLPYPDPSRI+ AG FV Sbjct 4848 TLYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRIISAGVFV 4907 Query 845 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 904 DDI KTD +++ER+VSLAIDAYPL+KHP EY VF+ L +++ L+ L +L+ +S Sbjct 4908 DDITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNEGVLESFS 4967 Query 905 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 V L +++ S++W+ FY +MY TVLQ Sbjct 4968 VTLLDEHESKFWDESFYASMYEKSTVLQ 4995 >sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/929 (59%), Positives = 694/929 (75%), Gaps = 8/929 (1%) Query 6 SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNL 65 S+LNR G SAARL PC GT D RAFDIYN V+ K LK NC RF+ D L Sbjct 4048 SYLNRARGSSAARLEPC-NGTDIDKCVRAFDIYNKNVSFLGKCLKMNCVRFKNAD----L 4102 Query 66 IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMV-PHISRQRLTKYTM 124 D YFV+KR T S +HE+++YNLL A+A+HDFF ++ DG ++ ++SR LTKYTM Sbjct 4103 KDGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWK-DGRVIYGNVSRHNLTKYTM 4161 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DLVYA+R+FDE NCD LKE+LV CCD+ YF+ K WYD VEN DI RVYA+LG+ V + Sbjct 4162 MDLVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASLGKIVAR 4221 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 A+LK V CDAM G+VGVLTLDNQDLNGN+YDFGDF+ + P GVP SYYS +MPI Sbjct 4222 AMLKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYYSYMMPI 4281 Query 245 LTLTRALTAESHVDTDLTKPYIK-WDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD 303 + LT L +E V +D+ K +DLLKYDFTE + LF++YFK+W YHPNC +C D Sbjct 4282 MGLTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPNCSDCYD 4341 Query 304 DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS 363 D C++HCANFN LF+T P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN HS Sbjct 4342 DMCVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNKDVNTHS 4401 Query 364 SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFA 423 RL+ ELL + DP++ AS L+D+RT CFSVAAL+ + Q VKPG+FN++FY+F Sbjct 4402 VRLTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNEEFYNFL 4461 Query 424 VSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCY 483 +GFF EGS + LKHFFFAQ+G+AA+ D+D+YRYN PT+ DI Q ++V +YFD Y Sbjct 4462 RLRGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVSRYFDIY 4521 Query 484 DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN 543 +GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDALFA TKRNV+PT+TQ+N Sbjct 4522 EGGCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLPTMTQLN 4581 Query 544 LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK 603 LKYAIS K RARTV GVS+ STMT RQ+HQK LKSI TR ATVVIGT+KFYGGW+NML+ Sbjct 4582 LKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGGWNNMLR 4641 Query 604 TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL 663 T+ VENP LMGWDYPKCDRA+PNM+R+++++VL KH CC+ + RFYRL NE AQVL Sbjct 4642 TLIDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGNELAQVL 4701 Query 664 SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL 723 +E+V G Y KPGGT+SGDA+TAYANS+FNI QAV++N+N LLS + + VR+L Sbjct 4702 TEVVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNNVNVRDL 4761 Query 724 QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFK 783 Q RLY+ YR V+ F++++Y YLRKHFSMMILSDD VVC+N YA G +A I FK Sbjct 4762 QRRLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIADISAFK 4821 Query 784 SVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCF 843 + LYYQNNVFMS +KCW E DLTKGPHEFCSQHTM + D YLPYPDPSRIL AG F Sbjct 4822 ATLYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVF 4881 Query 844 VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY 903 VDD+VKTD +++ER+VSLAIDAYPL+KHPN EY VF++ L +++ L+ L +L+ + Sbjct 4882 VDDVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNEGVLESF 4941 Query 904 SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 SV L ++ ++W +FY +MY T+LQ Sbjct 4942 SVTLLDNQEDKFWCEDFYASMYENSTILQ 4970 >sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/929 (59%), Positives = 689/929 (74%), Gaps = 6/929 (1%) Query 5 QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 64 QS+LNRV G SAARL PC GT D V RAFDIYN VA KFLKTNC RF+ D+ D Sbjct 4004 QSYLNRVRGSSAARLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHD- 4061 Query 65 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 124 +Y++VKR T + HE+ YN LKD AVA+HDFF ++ +++R+ LTKYTM Sbjct 4062 ---AYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKYTM 4118 Query 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184 DL YA+R+FDE NC+ LKEILVT C +++F KDW+D VEN I VYA LG V Sbjct 4119 MDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIVAN 4178 Query 185 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 244 A+LK V FCDA+ G +GV+TLDNQDLNGN+YDFGDF++T PG G V SYYS +MP+ Sbjct 4179 AMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMMPL 4238 Query 245 LTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD 303 + +T L +E+ V +D+ Y ++DLL YDFTE + LF +YFKYWD+TYHPNC +C Sbjct 4239 MGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCSDCTS 4298 Query 304 DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS 363 D CI+HCANFN LFS P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L + Sbjct 4299 DECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDT 4358 Query 364 SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFA 423 +LS +LL + DP + AS LLD+RT CFS+AAL+ + +QTVKPG+FNKDFYDF Sbjct 4359 MKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYDFI 4418 Query 424 VSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCY 483 +GFF+EGS + LKHFFFAQ G AA++D++YYRYN T+ DI Q FV ++V KYF+CY Sbjct 4419 TERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFECY 4478 Query 484 DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN 543 DGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQMN Sbjct 4479 DGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMN 4538 Query 544 LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK 603 LKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NMLK Sbjct 4539 LKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLK 4598 Query 604 TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL 663 + DV+N LMGWDYPKCDRA+PNM+R+ ++++L KH CC+ + RFYRL+NE AQVL Sbjct 4599 NLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQVL 4658 Query 664 SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL 723 +E+V C G Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL D N + V+++ Sbjct 4659 TEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSI 4718 Query 724 QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFK 783 Q ++Y+ YR+ +D +FV E+++YLRKHFSMMILSDD VVC+N YA G VA I FK Sbjct 4719 QRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFK 4778 Query 784 SVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCF 843 + LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ + D YLPYPDPSRIL AG F Sbjct 4779 ATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVF 4838 Query 844 VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY 903 VDDIVKTD +M+ER+VSLAIDAYPLTKHP Y VF+ L +++ L L +LD + Sbjct 4839 VDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSF 4898 Query 904 SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 SV + + ++W EFY ++Y TVLQ Sbjct 4899 SVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4927 >sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 1128 bits (2917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/930 (59%), Positives = 686/930 (74%), Gaps = 8/930 (1%) Query 5 QSFLNRVCGVSAAR-LTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 QS+LN CGV L PC GT D V RAFDIYN VA KFLKTNC RF+ D+ D Sbjct 4029 QSYLNE-CGVLVQLDLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHD 4086 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 +Y+VVKR T S HE+ YN LKD VA+HDFF ++ +++R+ LTKYT Sbjct 4087 ----AYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYT 4142 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DL YA+R+FDE NC+ LKEILVT C++ +F KDW+D VEN I VYA LG V Sbjct 4143 MMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVA 4202 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 A+LK V FCDA+ G +G++TLDNQDLNGN+YDFGDF++TTPG G V SYYS +MP Sbjct 4203 NAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMMP 4262 Query 244 ILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 ++ +T L +E+ V +D+ Y ++DLL YDFT+ + KLF +YFK+WD+TYHPNC +C Sbjct 4263 LMGMTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDCT 4322 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 D CI+HCANFN LFS P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L Sbjct 4323 SDECIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLD 4382 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 + +LS +LL + DP + AS LLD+RT CFS+AAL+ V +QTVKPG+FNKDFYDF Sbjct 4383 TMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYDF 4442 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 +GFF+EGS + LKHFFFAQ G AA++D++YYRYN T+ DI Q FV ++V KYF+C Sbjct 4443 ITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFEC 4502 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 YDGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQM Sbjct 4503 YDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQM 4562 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NML Sbjct 4563 NLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNML 4622 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 K + DV+N LMGWDYPKCDRA+PNM+R+ ++++L KH CC+ S RFYRL+NE AQV Sbjct 4623 KNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQV 4682 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+E+V C G Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL D N + V++ Sbjct 4683 LTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKS 4742 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 +Q ++Y+ YR+ +D +FV E+++YLRKHFSMMILSDD VVC+N YA G VA I F Sbjct 4743 IQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAF 4802 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+ LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ + D YLPYPDPSRIL AG Sbjct 4803 KATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGV 4862 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTD +M+ER+VSLAIDAYPLTKHP Y VF+ L +++ L L +LD Sbjct 4863 FVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDS 4922 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV + + ++W EFY ++Y TVLQ Sbjct 4923 FSVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4952 >sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat coronavirus (strain 681) OX=33740 GN=rep PE=3 SV=1 Length=307 Score = 483 bits (1242), Expect = 2e-163, Method: Compositional matrix adjust. Identities = 225/307 (73%), Positives = 266/307 (87%), Gaps = 0/307 (0%) Query 506 FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST 565 FNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNLKYAISAKNRARTVAGVSI ST Sbjct 1 FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 60 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA 625 MT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ + DV++P LMGWDYPKCDRA Sbjct 61 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA 120 Query 626 MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA 685 MPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLSE+VMCGG YVKPGGTSSGDA Sbjct 121 MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 180 Query 686 TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF 745 TTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ RLY +YR VD FV+E+ Sbjct 181 TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY 240 Query 746 YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL 805 Y +L KHFSMMILSDD VVC+NS +AS+G +A+I F+ VLYYQNNVFMSEAKCW ETD+ Sbjct 241 YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI 300 Query 806 TKGPHEF 812 KGPHEF Sbjct 301 EKGPHEF 307 >sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turkey coronavirus (strain Minnesota) OX=231430 GN=rep PE=3 SV=1 Length=306 Score = 444 bits (1142), Expect = 2e-148, Method: Compositional matrix adjust. Identities = 213/307 (69%), Positives = 248/307 (81%), Gaps = 1/307 (0%) Query 506 FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST 565 FNK+GKARLYY+ MS E+QD LF TK+NV+PTITQMNLKYAISAKNRARTVAGVSI ST Sbjct 1 FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST 59 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA 625 MTNRQFHQK+LKSI TR A VVIGT+KFYGGW NML+ + VE+P LMGWDYPKCDRA Sbjct 60 MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA 119 Query 626 MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA 685 MPN+LRI ASLVLARKHT CC+ S R YRL NECAQVLSE V+ G +YVKPGGTSSGDA Sbjct 120 MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA 179 Query 686 TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF 745 TTAYANSVFNI QA +ANV LLS I +++LQ+ LY+ +YR + D FV +F Sbjct 180 TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF 239 Query 746 YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL 805 Y+YL K+FS+MI +DD VVC+N+T A QGLVA I F+ +LYYQNNV+M+++KCW E DL Sbjct 240 YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL 299 Query 806 TKGPHEF 812 KGPHEF Sbjct 300 EKGPHEF 306 >sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156 GN=rep PE=1 SV=1 Length=6857 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 121/489 (25%), Positives = 219/489 (45%), Gaps = 46/489 (9%) Query 419 FYDFAVSKGFFKEGSSV--ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV 476 FYD + + G K+F++ + A++D YY Y + L V + + Sbjct 4909 FYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCYYDYQGTGFYSPKLLAGVYDFM 4968 Query 477 DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV 535 + +CY IN + + N G + Y ++ E+ LF Y ++ Sbjct 4969 KRVTECYR---INERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENIARLFEYAQKAP 5025 Query 536 IPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKL---LKSIAATRGATVVIGTS 592 +P T++ K+A+SAK RARTV+ S ++ R H+ + + +A G +IG S Sbjct 5026 LPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSGGFCLIGVS 5085 Query 593 KFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRF 652 K+ + LK Y +E + G DY KCDR P R + + +L + Sbjct 5086 KYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTFPLSFRALTAALLYE----LGEWDEKS 5141 Query 653 YRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS--T 710 + NE + + ++C G L KPGGTSSGDATTA++N+ +N +LS + Sbjct 5142 WLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDLS 5201 Query 711 DGNKIADKYVRNL----QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCF 766 +GNK+ N ++++ L ++ F+N LSDD+ + F Sbjct 5202 EGNKVMRIAAHNAYTTGDYQVFNTLLEDQFQTNYFLN-------------FLSDDSFI-F 5247 Query 767 NSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGP-HEFCSQHTMLVKQGDD 825 + A + + + +NF + L + + + K W+ TKG EFCS H ++K + Sbjct 5248 SKPEALK--IFTCENFSNKLQTILHTKVDQTKSWS----TKGHIEEFCSAH--IIKTDGE 5299 Query 826 YVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYL 885 Y +L P R+L + +D + D M RFV++ ++ +++ + + +F ++L Sbjct 5300 YHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFL 5355 Query 886 QYIRKLHDE 894 +++ + Sbjct 5356 DKVQQFRKD 5364 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 43/156 (28%), Positives = 68/156 (44%), Gaps = 32/156 (21%) Query 79 NYQHEETIYNLLKDCP--AVAKHDFFKFRIDGDMVPH----------ISRQRLTKYTMAD 126 YQ + + +KD A+AK F ++PH + R +++++ D Sbjct 4618 EYQSKRFMIKRVKDQSEFALAKTAFLP-----SIIPHHMEKQNGEWFLIRGPTSQWSLGD 4672 Query 127 LVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQAL 186 LVYA+ D+ D L E +N D++ + + F+ ANL E A+ Sbjct 4673 LVYAIWLGDQ---DYLSECGFVFNPSRDEFLDDANQRSFL---------ANLLE---PAI 4717 Query 187 LKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDF 222 L ++ + LTLDN DLNG YDFGD+ Sbjct 4718 LNFSHIYWQVKMCKVPYKLTLDNVDLNGQLYDFGDY 4753 >sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX=360393 GN=rep PE=2 SV=1 Length=6733 Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 114/468 (24%), Positives = 204/468 (44%), Gaps = 42/468 (9%) Query 437 LKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVN 496 K+F++ + A++D +Y Y + L V + + + CY + Sbjct 4805 FKYFYYLSNPAGALADVCFYDYQGTGFYSPKLLAGVYDFMKRVTTCYK---TDERFTYEQ 4861 Query 497 NLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRAR 555 + + N G + Y ++ E+ LF Y ++ +P T++ K+A+SAK RAR Sbjct 4862 AKPRKSSMGINITGYQQDAVYRALGPENITKLFEYAQKAPLPFCTKIITKFALSAKARAR 4921 Query 556 TVAGVSICSTMTNRQFHQKL---LKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 TV+ S ++ R H+ + + +A +IG SK+ + LK Y +E Sbjct 4922 TVSSCSFIASTIFRFAHKPVTSKMVEVAQNSQGFCLIGVSKYGLKFSKFLKDKYGAIEQF 4981 Query 613 HLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGS 672 + G DY KCDR P R + + +L + NE + + ++C G Sbjct 4982 DVFGSDYTKCDRTFPLSFRALTAALLYELG----GWEEDSWLYLNEVNSYMLDTMLCDGM 5037 Query 673 LYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS--TDGNKIADKYVRNLQHRLYEC 730 L KPGGTSSGDATTA++N+ +N +LS +D NK+ +R H Y Sbjct 5038 LLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDLSDCNKV----MRIAAHNAYT- 5092 Query 731 LYRNRDVDTDFVNEFYAYLRKHFS----MMILSDDAVVCFNSTYASQGLVASIKNFKSVL 786 T F L + F + LSDD+ + F+ A + + + +NF + L Sbjct 5093 --------TGDYGVFNTLLEEQFQTNYFLNFLSDDSFI-FSKPGALK--IFTCENFSNKL 5141 Query 787 YYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDD 846 + + K W T + EFCS H ++K +Y +L P R+L + +D Sbjct 5142 QTILHTKVDLTKSWATTGHIE---EFCSAH--IIKTDGEYHFL--PSRGRLLASLLILDK 5194 Query 847 IVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDE 894 + D M RFV++ ++ +++ + + +F ++L +++ + Sbjct 5195 LSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFLDKVQQFRKD 5240 Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 20/133 (15%) Query 95 AVAKHDFFKFRIDGDMVPH-----ISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTY 149 A+A+ F I MV + R T++++ DLVYA+ D+ D E + Sbjct 4512 ALARTAFLPSIIPHHMVHQNGEWFLVRGPTTQWSLGDLVYAIWLGDQAYLD---ECGFVF 4568 Query 150 NCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDN 209 N D++ + + ++ ANL E A+L + ++ + +TLDN Sbjct 4569 NPSRDEFLDDANQRSYL---------ANLLE---PAILSFCEIFHCVKGCQVPYKITLDN 4616 Query 210 QDLNGNWYDFGDF 222 DL G YDFGD+ Sbjct 4617 LDLKGQLYDFGDY 4629 >sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=rep PE=1 SV=1 Length=6872 Score = 100 bits (248), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 113/448 (25%), Positives = 188/448 (42%), Gaps = 56/448 (13%) Query 415 FNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNA--AISDYDYYRYNLPTMCDIRQLLFV 472 + + FYD + + G ++ + Q G A+ D+ YY YN P D L V Sbjct 4888 YKRPFYDLDLIQRMNSAGLNLSETTGYHYQCGTTTEAVEDFMYYNYNSPKSFDPSYLKSV 4947 Query 473 VEVV-DKYFDCYDGGCINANQVIVNNLDKSAGFP-FNKWGKA------RLYYDSMSYEDQ 524 + DK+ I+ ++ L+ +G P + G + ++++ + Sbjct 4948 YTYMRDKFMKI-----ISTDE----KLNHQSGAPRMSSMGVGVSGFFQKTVWNALPEDFS 4998 Query 525 DALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRG 584 L + V+P T + K+ K R RT+ G S ++ R H+ + + T Sbjct 4999 PRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSSFITSSIFRMLHKPVTNKMVQTAQ 5058 Query 585 ATV---VIGTSKFYGGWHNMLKTVYSD-VENPHLMGWDYPKCDRAMPNMLRIM-ASLVLA 639 A + +IG SKF G+H L + + +E+ +MG DY KCDR+ P + R + A+L Sbjct 5059 ANIGPFLIGISKFNLGFHKYLSAHHPNGIEDCQVMGADYTKCDRSFPVVCRALSAALFYE 5118 Query 640 RKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQA 699 H L + NE L + G ++ KPGGT+SGD+TTA++NS +N Sbjct 5119 LGH-----LEPNNHWFLNEMFAFLLDPSFISGHIFNKPGGTTSGDSTTAFSNSFYNYFVH 5173 Query 700 VTANVNALLSTDGNKIADKYVRNLQHRLYEC-------LYRNRDVDTDFVNEFYAYLRKH 752 + L+T+ + + + NL H+ + LY + D + F H Sbjct 5174 LYIQYLTFLTTEMPP-SYQPLCNLAHQAFSTGNTETYDLYFSMADDLNSTEYFL-----H 5227 Query 753 FSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEF 812 F LSDD+ + T + + NF L ++ AK W+ HEF Sbjct 5228 F----LSDDSFIISKPTAFP---IFTPANFSMKLQNVLGCYVDPAKSWSADGEI---HEF 5277 Query 813 CSQHTMLVKQGDDYVYLPYPDPSRILGA 840 CS H + + YV PDP+ +L Sbjct 5278 CSSHICKINEKYQYV----PDPNNMLAG 5301 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 76/191 (40%), Gaps = 35/191 (18%) Query 35 FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIY---NLLK 91 +I N+ VA K K N ++ L D+ HE IY LL Sbjct 4581 INILNNNVASLRKVFKKNTASIPSENGTIMLKDT----------GTAHE--IYVAKQLLA 4628 Query 92 DCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNC 151 V +H R + D ++ R T Y++ DLVYA D K +L+ + Sbjct 4629 KGLPVLQHA----RFNHDGTDYLIRYYTTPYSLGDLVYAYMVGD------FKHMLLALDI 4678 Query 152 CDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQD 211 D+ + ++ Y N E++R L + + + A + +TLDN D Sbjct 4679 TDETCLDPGNYSS----------YYNFKEQLRNKLASVIPNVNKILAAELPLAITLDNID 4728 Query 212 LNGNWYDFGDF 222 LNG YDFGD+ Sbjct 4729 LNGFLYDFGDY 4739 >sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhagic fever virus OX=38143 GN=rep PE=2 SV=4 Length=3595 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/286 (24%), Positives = 119/286 (42%), Gaps = 33/286 (12%) Query 441 FFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVI-----V 495 ++ Q G A + D ++NL T I L V+ +V Y G I I V Sbjct 2333 YYTQHGCEAAALQDLKKFNLSTQGFI--LPEVLNIVRNYLL----GTIGYRPAIYKPSTV 2386 Query 496 NNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRAR 555 + D AG + L + D D L V T+T + LK +K + R Sbjct 2387 PSNDSHAGINGLSFSTKTL----QALPDIDELCEKAIAEVWQTVTPVTLKKQFCSKAKTR 2442 Query 556 TVAGVSICSTMTNRQFHQKLLKSIA-ATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL 614 T+ G + +++ R + + A + + + +G SKF +V+ Sbjct 2443 TILGTNAMASLALRALLSGVTQGFQLAGKNSPICLGKSKF--------DPCTFEVKG-RC 2493 Query 615 MGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLY 674 + D CDR+ P ++R A+ +L C + Y + N C ++++ S Sbjct 2494 LETDLASCDRSTPAIVRHFATKLLF--EMACAERALPLY-VVNCC----HDLIVTQTSAA 2546 Query 675 VKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 K GG SSGD T+ AN+++++ V V LL +G+ ++ K++ Sbjct 2547 TKRGGLSSGDPVTSIANTIYSLVLYVQHMVLTLLE-NGHPLSLKFL 2591 >sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain VR-2332) OX=300559 GN=rep PE=1 SV=2 Length=3960 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 59/248 (24%), Positives = 105/248 (42%), Gaps = 30/248 (12%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA 512 D +Y+L T + L V+ +V KY + G C ++ S AG N++ Sbjct 2744 DLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK 2801 Query 513 RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH 572 D S + D L A R T+T LK K + RT+ G + + +R Sbjct 2802 ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHRAVL 2857 Query 573 QKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGWDYPKCDRAMPN 628 + + + + + +G +KF +++ P L + D CDR+ P Sbjct 2858 SGVTQGFMKKAFNSPIALGKNKF------------KELQTPVLGRCLEADLASCDRSTPA 2905 Query 629 MLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTA 688 ++R A+ +L + C+ H + N C +L V G++ K GG SSGD T+ Sbjct 2906 IVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITS 2958 Query 689 YANSVFNI 696 +N+++++ Sbjct 2959 VSNTIYSL 2966 >sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus OX=28344 PE=1 SV=2 Length=3931 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 28/247 (11%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA 512 D +Y+L T + L V+ +V KY + G C ++ S AG N++ Sbjct 2715 DLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK 2772 Query 513 RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH 572 D S + D L A R T+T LK K + RT+ G + + +R Sbjct 2773 ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHR--- 2825 Query 573 QKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGWDYPKCDRAMPNM 629 AA G T K + + K + +++ P L + D CDR+ P + Sbjct 2826 -------AALSGVTQGF-MKKAFNSPIALGKNKFKELQAPVLGRCLEADLASCDRSTPAI 2877 Query 630 LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAY 689 +R A+ +L + C+ H + N C +L V G++ K GG SSGD T+ Sbjct 2878 VRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITSV 2930 Query 690 ANSVFNI 696 +N+++++ Sbjct 2931 SNTIYSL 2937 >sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain HB-1) OX=300563 GN=rep PE=2 SV=3 Length=3961 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 28/247 (11%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA 512 D +Y+L T + L V+ +V KY + G C ++ S AG N++ Sbjct 2745 DLSKYDLVTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK 2802 Query 513 RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH 572 D S + D L A R T+T LK K + RT+ G + + +R Sbjct 2803 ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHR--- 2855 Query 573 QKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGWDYPKCDRAMPNM 629 AA G T K + + K + +++ P L + D CDR+ P + Sbjct 2856 -------AALSGVTQGF-MKKAFNSPIALGKNKFKELQTPVLGRCLEADLASCDRSTPAI 2907 Query 630 LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAY 689 +R A+ +L + C+ H + N C +L V G++ K GG SSGD T+ Sbjct 2908 VRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITSV 2960 Query 690 ANSVFNI 696 +N+++++ Sbjct 2961 SNTIYSL 2967 >sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain 16244B) OX=300561 GN=rep PE=1 SV=3 Length=3961 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 24/245 (10%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNKWGKA 512 D +Y+L T + L V+ +V KY + G C ++ S AG N++ Sbjct 2745 DLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGINGNRFPTK 2802 Query 513 RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH 572 D S + D L A R T+T LK K + RT+ G + + +R Sbjct 2803 ----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIALAHRAAL 2858 Query 573 QKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR 631 + + + + + +G +KF K + + V L D CDR+ P ++R Sbjct 2859 SGVTQGFMKKAFNSPIALGKNKF--------KELQTSVLGRCLEA-DLASCDRSTPAIVR 2909 Query 632 IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYAN 691 A+ +L + C+ H + N C +L V G++ K GG SSGD T+ +N Sbjct 2910 WFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGLSSGDPITSVSN 2962 Query 692 SVFNI 696 +++++ Sbjct 2963 TIYSL 2967 >sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic virus (strain California) OX=117128 PE=1 SV=2 Length=3080 Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust. Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 48/270 (18%) Query 454 DYYRYNLPT---MCDIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN 507 D+++YN P D + L V+ V + F+ + I + I N+L+ A Sbjct 2356 DFFKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDPEEIYNSLNMKAAIGAQ 2415 Query 508 KWGKARLYYDSMS-YEDQDALFAYTKR--NVIPTITQMNLKYAISAKNRAR--------- 555 GK + Y++ + ++ + LF +R N + +LK + + R Sbjct 2416 YRGKKKEYFEGLDDFDRERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVRANKTRTFTA 2475 Query 556 ----TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 T+ G +C N +F++K LK +G +KFYGGW +++++ Sbjct 2476 APIDTLLGAKVCVDDFNNEFYRKNLK-------CPWTVGMTKFYGGWDKLMRSLPD---- 2524 Query 612 PHLMGWDYPKCDRAM------PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-S 664 GW Y D + P +L A L++ + + L N A+++ + Sbjct 2525 ----GWLYCHADGSQFDSSLTPALLN--AVLIIRSFYMEDWWVGQEM--LENLYAEIVYT 2576 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVF 694 ++ G+++ K G +SG +T N++ Sbjct 2577 PILAPDGTIFKKFRGNNSGQPSTVVDNTLM 2606 >sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain Lelystad) OX=11049 GN=rep PE=1 SV=3 Length=3855 Score = 38.5 bits (88), Expect = 0.40, Method: Compositional matrix adjust. Identities = 54/259 (21%), Positives = 98/259 (38%), Gaps = 58/259 (22%) Query 517 DSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLL 576 D S + D + A + T+T LK +K + RT+ G + + +R + Sbjct 2696 DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTILGTNNFIALAHRSALSGVT 2755 Query 577 KS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMAS 635 ++ + + + +G +KF K ++ V L D CDR+ P ++R + Sbjct 2756 QAFMKKAWKSPIALGKNKF--------KELHCTVAGRCLEA-DLASCDRSTPAIVRWFVA 2806 Query 636 LVLARKHTTCCSLSHRFYRLANECAQVLS--------EMVMCGGSLYVKPGGTSSGDATT 687 +L Y LA C + L ++V + K GG SSGD T Sbjct 2807 NLL--------------YELAG-CEEYLPSYVLNCCHDLVATQDGAFTKRGGLSSGDPVT 2851 Query 688 AYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYA 747 + +N+V+++ V QH + L ++ F+ E Sbjct 2852 SVSNTVYSL-----------------------VIYAQHMVLSALKMGHEIGLKFLEEQLK 2888 Query 748 Y--LRKHFSMMILSDDAVV 764 + L + M++ SDD V+ Sbjct 2889 FEDLLEIQPMLVYSDDLVL 2907 >sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrogenase elevating virus (strain C) OX=300015 GN=rep PE=3 SV=2 Length=3637 Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust. Identities = 45/181 (25%), Positives = 74/181 (41%), Gaps = 23/181 (13%) Query 520 SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKS- 578 S+ D DAL + T+T LK +K + RT+ G + + R + + Sbjct 2527 SHPDIDALCERACKEHWQTVTPCTLKKQYCSKAKTRTILGTNNFVALGLRSALSGVTQGF 2586 Query 579 IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMAS--- 635 + G+ + +G +KF L T S + D CDR+ P ++R + Sbjct 2587 MRKGIGSPICLGKNKF-----TPLPTKVSG----RCLEADLASCDRSTPAIIRWFTTNLL 2637 Query 636 LVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFN 695 LA S + N C +S M C + K GG SSGD T+ +N+V++ Sbjct 2638 FELAGPEEWIPSY------VLNCCHDAVSTMSGC----FDKRGGLSSGDPVTSVSNTVYS 2687 Query 696 I 696 + Sbjct 2688 L 2688 >sp|C4LCH1|UXUA_TOLAT Mannonate dehydratase OS=Tolumonas auensis (strain DSM 9187 / TA4) OX=595494 GN=uxuA PE=3 SV=1 Length=393 Score = 37.4 bits (85), Expect = 0.56, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 49/103 (48%), Gaps = 10/103 (10%) Query 502 AGFPFNKWG------KARLY-YDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRA 554 AG P + G +ARL YD + FA+ +N+IP Q+ L+ A+ + Sbjct 179 AGLPGAEEGYTIEQFRARLADYDGIDKAKLREHFAFFLKNIIPVAEQVGLRMAVHPDDPP 238 Query 555 RTVAGVS-ICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG 596 R + G+ I ST+ + Q+ + + SIA G T+ G+ G Sbjct 239 RPILGLPRIVSTIEDMQWMVETVDSIA--NGFTMCTGSYGVRG 279 >sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (isolate Pig/United States/SD 01-08/2001) OX=857306 PE=1 SV=2 Length=3838 Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust. Identities = 53/259 (20%), Positives = 98/259 (38%), Gaps = 58/259 (22%) Query 517 DSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLL 576 D S + D + A + T+T LK +K + RT+ G + + +R + Sbjct 2679 DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTILGTNNFIALAHRSALSGVT 2738 Query 577 KS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMAS 635 ++ + + + +G +KF K ++ V L D CDR+ P ++R + Sbjct 2739 QAFMKKAWKSPIALGKNKF--------KELHCTVAGRCLEA-DLASCDRSTPAIVRWFVA 2789 Query 636 LVLARKHTTCCSLSHRFYRLANECAQVLS--------EMVMCGGSLYVKPGGTSSGDATT 687 +L Y LA C + L ++V + K GG SSGD T Sbjct 2790 NLL--------------YELAG-CEEYLPSYVLNCCHDLVATQDGAFTKRGGLSSGDPVT 2834 Query 688 AYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYA 747 + +N+V+++ + QH + L ++ F+ E Sbjct 2835 SVSNTVYSL-----------------------IIYAQHMVLSALKMGHEIGLKFLEEQLK 2871 Query 748 Y--LRKHFSMMILSDDAVV 764 + L + M++ SDD V+ Sbjct 2872 FEDLLEIQPMLVYSDDLVL 2890 >sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon mosaic virus II (isolate USA) OX=148360 PE=1 SV=3 Length=1017 Score = 37.7 bits (86), Expect = 0.66, Method: Compositional matrix adjust. Identities = 59/269 (22%), Positives = 110/269 (41%), Gaps = 46/269 (17%) Query 454 DYYRYNLPTM---CDIRQLLFVVE-VVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFN 507 D+++YN P + D VE V+ D C + I +L+ A Sbjct 291 DFFKYNKPVVLNEVDFNAFEKAVEGVITMMVDFEFAECLFVTDPDEIYGSLNMKAAVGAQ 350 Query 508 KWGKARLYYDSM-SYEDQDALFAYTKR--NVIPTITQMNLKYAISA-----KNRART--- 556 GK + Y+ M S++ + L+ +R N I +LK + N+ RT Sbjct 351 YKGKKQDYFSGMDSFDKERLLYLSCERLFNGEKGIWNGSLKAELRPIEKVQANKTRTFTA 410 Query 557 -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + G +C N QF+ LK +G +KFYGGW +++++ Sbjct 411 APLDTLLGAKVCVDDFNNQFYSFNLK-------CPWTVGMTKFYGGWDKLMRSLPD---- 459 Query 612 PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFY---RLANECAQVL-SE 665 GW Y D + ++ ++ + VL+ + CC + + L N A+++ + Sbjct 460 ----GWTYCHADGSQFDSSLTPLLLNAVLSIR---CCFMEDWWVGREMLENLYAEIVYTP 512 Query 666 MVMCGGSLYVKPGGTSSGDATTAYANSVF 694 ++ G+++ K G +SG +T N++ Sbjct 513 ILAPDGTIFKKFRGNNSGQPSTVVDNTLM 541 >sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrogenase elevating virus (strain Plagemann) OX=300016 GN=rep PE=1 SV=2 Length=3616 Score = 37.7 bits (86), Expect = 0.66, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 73/183 (40%), Gaps = 27/183 (15%) Query 520 SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKS- 578 S+ D DAL T+T LK +K++ RT+ G + + R + + Sbjct 2506 SHPDIDALCKRACEEHWQTVTPCTLKKQYCSKSKTRTILGTNNFVALGLRSALSGVTQGF 2565 Query 579 IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR-----IM 633 + G + +G +KF T + D CDR+ P ++R ++ Sbjct 2566 MRKGIGTPICLGKNKF---------TPLPVRIGGRCLEADLASCDRSTPAIIRWFTTNLL 2616 Query 634 ASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSV 693 L A + L N C V+S M C + K GG SSGD T+ +N+V Sbjct 2617 FELAGAEEWIPSYVL--------NCCHDVVSTMSGC----FDKRGGLSSGDPVTSISNTV 2664 Query 694 FNI 696 +++ Sbjct 2665 YSL 2667 >sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic virus (strain Reunion Island) OX=117129 PE=3 SV=1 Length=3083 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 57/270 (21%), Positives = 110/270 (41%), Gaps = 48/270 (18%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKY------FDCYDGGCINANQVIVNNLDKSAGFPFN 507 D+++YN P + + +E VD F+ + I + I ++L+ A Sbjct 2359 DFFKYNKPVIVNQLDHDKFLEAVDGVIRMMCDFEFNECRFITDPEEIYSSLNMKAAIGAQ 2418 Query 508 KWGKARLYYDSM-SYEDQDALFAYTKR--NVIPTITQMNLKYAISA-----KNRART--- 556 GK + Y++ + +++ + LF +R N + +LK + N+ RT Sbjct 2419 YRGKKKEYFEGLDNFDMERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVQANKTRTFTA 2478 Query 557 -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + G +C N +F+ K LK +G SKFYGGW +++ + Sbjct 2479 APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMSKFYGGWDKLMRALPD---- 2527 Query 612 PHLMGWDYPKCDRAM------PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-S 664 GW Y D + P +L A L++ + + L N A+++ + Sbjct 2528 ----GWLYCHADGSQFDSSLTPALLN--AVLIIRSFYMEDWWVGQEM--LENLYAEIVYT 2579 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVF 694 ++ G+++ K G +SG +T N++ Sbjct 2580 PILAPDGTIFKKFRGNNSGQPSTVVDNTLM 2609 >sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=pyrC PE=3 SV=1 Length=344 Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust. Identities = 39/159 (25%), Positives = 66/159 (42%), Gaps = 27/159 (17%) Query 445 DGNAAISDYDYYRYNLPTMCDIRQLLFV-VEVVDKYFDCYDGGCINANQVIVNNLDKSA- 502 + +AA+ D TM +I LL V EV + + D +D + I NL + Sbjct 107 NSDAAVKGLDALFPIFETMAEIGMLLLVHGEVTESHIDIFDREAL----FIERNLSRIVD 162 Query 503 GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV-- 560 FP + ++ ++ ++ ++ NV TIT +L NR + G Sbjct 163 AFP-----QLKVVFEHITTKEAAEFVTSASDNVAATITPQHLLL-----NRNDLLVGGVR 212 Query 561 --SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 + C + R HQ+ L++ AT G+SKF+ G Sbjct 213 PHNFCLPVLKRNIHQEALRAAVAT-------GSSKFFLG 244 >sp|Q492K3|HISX_BLOPB Histidinol dehydrogenase OS=Blochmannia pennsylvanicus (strain BPEN) OX=291272 GN=hisD PE=3 SV=1 Length=443 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 16/110 (15%) Query 706 ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVC 765 A+L T + IA+K + L H+ + L RN V +N S MI++++ + C Sbjct 271 AILITPYSCIAEKTKKEL-HKQLKILPRNDIVRNVLLN----------SRMIITNNLMEC 319 Query 766 FN--STYASQGLVASIKNFKSVLYYQNN---VFMSEAKCWTETDLTKGPH 810 F+ ++YA + L+ I+N L+Y N +F+ T D GP+ Sbjct 320 FSISNSYAPEHLIIQIENASDYLHYITNAGSIFLGNWSPETAGDYASGPN 369 >sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteritis virus (strain Bucyrus) OX=299386 GN=rep PE=1 SV=3 Length=3175 Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust. Identities = 45/218 (21%), Positives = 86/218 (39%), Gaps = 49/218 (22%) Query 520 SYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAG--------VSICSTMTNRQF 571 SY D + + + ++ + T T K +K + R++ G + C + F Sbjct 2032 SYCLIDDMVSQSMKSNLQTATMATCKRQYCSKYKIRSILGTNNYIGLGLRACLSGVTAAF 2091 Query 572 HQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP--HLMGWDYPKCDRAMPNM 629 + A G+ + +G SKF + P + + D CDR+ P + Sbjct 2092 QK------AGKDGSPIYLGKSKF------------DPIPAPDKYCLETDLESCDRSTPAL 2133 Query 630 LRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS-------EMVMCGGSLYVKPGGTSS 682 +R A+ + + LA + V S ++V+ G + K GG SS Sbjct 2134 VRWFAT--------------NLIFELAGQPELVHSYVLNCCHDLVVAGSVAFTKRGGLSS 2179 Query 683 GDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 GD T+ +N+++++ + L +IA+KY+ Sbjct 2180 GDPITSISNTIYSLVLYTQHMLLCGLEGYFPEIAEKYL 2217 >sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic virus (strain Singapore) OX=117130 PE=3 SV=2 Length=3083 Score = 34.7 bits (78), Expect = 6.0, Method: Compositional matrix adjust. Identities = 59/270 (22%), Positives = 112/270 (41%), Gaps = 48/270 (18%) Query 454 DYYRYNLPTMC---DIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN 507 D+++YN P + D + L V V + F+ + I + I ++L+ A Sbjct 2359 DFFKYNKPVVVNQLDHDKFLGAVNGVIRMMCDFEFNECRFITDPEEIYDSLNMKAAIGAQ 2418 Query 508 KWGKARLYYDSM-SYEDQDALFAYTKR--NVIPTITQMNLKYAISA-----KNRART--- 556 GK + Y++ + +++ + LF +R N + +LK + N+ RT Sbjct 2419 YRGKKKEYFEGLDNFDRERLLFQSCERLFNGHKGLWNGSLKAELRPLEKVQANKTRTFTA 2478 Query 557 -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + G +C N +F+ K LK +G +KFYGGW +++ E Sbjct 2479 APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMTKFYGGWDKLMR------EL 2525 Query 612 PHLMGWDYPKCDRAM------PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-S 664 P GW Y D + P +L A L++ + + L N A+++ + Sbjct 2526 PD--GWLYCHADGSQFDSSLTPALLN--AVLIIRSFYMEDWWVGQEM--LENLYAEIVYT 2579 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVF 694 ++ G+++ K G +SG +T N++ Sbjct 2580 PILAPDGTIFKKFRGNNSGQPSTVVDNTLM 2609 >sp|Q0CRF3|ATG5_ASPTN Autophagy protein 5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=atg5 PE=3 SV=2 Length=315 Score = 33.5 bits (75), Expect = 9.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query 161 DWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFG 220 DW D +++R+ A+ G + A + +V+ D MRN G++TL +D +G W Sbjct 129 DWPDE----ELVRLDAD-GMVMHDAFINSVKEADFMRNGTAKGIMTLSKEDSSGLWKSVQ 183 Query 221 D 221 D Sbjct 184 D 184 Lambda K H a alpha 0.324 0.137 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 107377657200 Results from round 2 Query= YP_009725307.1 RNA-dependent RNA polymerase [Severe acute respiratory syndrome coronavirus 2] Length=932 Score E Sequences producing significant alignments: (Bits) Value Sequences used in model and found again: sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 1536 0.0 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 1534 0.0 sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 1533 0.0 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 1533 0.0 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 1531 0.0 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 1527 0.0 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 1521 0.0 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 1518 0.0 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 1509 0.0 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 1479 0.0 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 1479 0.0 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 1476 0.0 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 1466 0.0 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 1464 0.0 sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 1462 0.0 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 1462 0.0 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 1460 0.0 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 1459 0.0 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 1458 0.0 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 1455 0.0 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 1455 0.0 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 1453 0.0 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 1453 0.0 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 1444 0.0 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 1424 0.0 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 1409 0.0 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 1381 0.0 sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 1377 0.0 sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 1377 0.0 sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 1372 0.0 sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat ... 475 2e-160 sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turk... 444 2e-148 sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11... 475 3e-143 sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX... 467 3e-140 sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir... 403 1e-118 sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reprodu... 271 4e-74 sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reprodu... 270 5e-74 sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprodu... 268 3e-73 sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhag... 256 2e-69 Sequences not found previously or not previously below threshold: sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reprodu... 268 3e-73 sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reprodu... 231 3e-61 sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reprodu... 231 3e-61 sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrog... 208 1e-53 sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrog... 204 2e-52 sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteriti... 173 1e-42 sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic... 58.1 5e-07 sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic... 55.4 3e-06 sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic... 55.0 3e-06 sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon ... 55.0 4e-06 sp|Q01901|POLG_PRSVH Genome polyprotein OS=Papaya ringspot virus ... 54.3 6e-06 sp|O56075|POLG_PEMVM Genome polyprotein OS=Peanut mottle virus (s... 53.5 1e-05 sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y (iso... 52.7 2e-05 sp|Q9JH69|NS1AB_TASV1 Non-structural polyprotein 1AB OS=Turkey as... 50.8 6e-05 sp|P17766|POLG_PPVNA Genome polyprotein OS=Plum pox potyvirus (is... 49.3 2e-04 sp|Q01681|POLG_PPVEA Genome polyprotein (Fragment) OS=Plum pox po... 48.5 3e-04 sp|P13529|POLG_PPVD Genome polyprotein OS=Plum pox potyvirus (str... 48.5 3e-04 sp|P17765|POLG_BYMV Genome polyprotein OS=Bean yellow mosaic viru... 48.5 3e-04 sp|P17767|POLG_PPVRA Genome polyprotein OS=Plum pox potyvirus (st... 48.5 4e-04 sp|P09814|POLG_TVMV Genome polyprotein OS=Tobacco vein mottling v... 48.5 4e-04 sp|Q84934|POLG_PPVSK Genome polyprotein OS=Plum pox potyvirus (st... 48.1 5e-04 sp|P20234|POLG_OMV Genome polyprotein (Fragment) OS=Ornithogalum ... 47.3 8e-04 sp|Q65399|POLG_BCMNN Genome polyprotein OS=Bean common mosaic nec... 47.0 0.001 sp|P29152|POLG_PSBMV Genome polyprotein OS=Pea seed-borne mosaic ... 46.6 0.002 sp|Q01500|POLG_PEMVC Genome polyprotein OS=Pepper mottle virus (i... 46.2 0.002 sp|Q65729|POLG_BSTVG Genome polyprotein (Fragment) OS=Brome strea... 45.8 0.002 sp|Q8JV21|POLG_LJUV1 Genome polyprotein OS=Ljunganvirus 1 OX=1001... 46.2 0.002 sp|Q6XW15|POLG_BTMV Genome polyprotein OS=Beet mosaic virus OX=11... 45.8 0.002 sp|Q02963|POLG_PVYHU Genome polyprotein OS=Potato virus Y (strain... 45.8 0.002 sp|Q65730|POLG_BSTV1 Genome polyprotein OS=Brome streak virus (st... 45.8 0.003 sp|Q90069|POLG_SBMVG Genome polyprotein OS=Soybean mosaic virus (... 45.0 0.004 sp|P21231|POLG_SBMVN Genome polyprotein OS=Soybean mosaic virus (... 44.6 0.005 sp|P89876|POLG_LMVE Genome polyprotein OS=Lettuce mosaic virus (s... 44.3 0.007 sp|P36287|POLG_SMSV4 Genome polyprotein (Fragment) OS=San Miguel ... 43.9 0.008 sp|O11436|POLG_RGMVD Genome polyprotein OS=Ryegrass mosaic virus ... 42.7 0.021 sp|P36286|POLG_SMSV1 Genome polyprotein OS=San Miguel sea lion vi... 42.3 0.029 sp|P04517|POLG_TEV Genome polyprotein OS=Tobacco etch virus OX=12... 41.9 0.034 sp|P19723|POLG_PRSVP Genome polyprotein (Fragment) OS=Papaya ring... 41.6 0.040 sp|Q85197|POLG_PVMA Genome polyprotein OS=Potato virus A OX=12215... 41.6 0.051 sp|P31999|POLG_LMV0 Genome polyprotein OS=Lettuce mosaic virus (s... 41.2 0.057 sp|P36312|POL1_CPSMV RNA1 polyprotein OS=Cowpea severe mosaic vir... 40.8 0.069 sp|P19724|POLG_PRSVW Genome polyprotein (Fragment) OS=Papaya ring... 40.8 0.069 sp|P18247|POLG_PVYN Genome polyprotein OS=Potato virus Y (strain ... 40.8 0.080 sp|O73556|POLG_HPE2W Genome polyprotein OS=Human parechovirus 2 (... 40.8 0.084 sp|Q9WAL8|POL1_SDVS5 RNA1 polyprotein OS=Satsuma dwarf virus (iso... 40.4 0.099 sp|Q66578|POLG_HPE1H Genome polyprotein OS=Human parechovirus 1 (... 40.4 0.11 sp|Q9DUN3|POLG_VESVA Genome polyprotein OS=Vesicular exanthema of... 40.0 0.12 sp|P89201|POLG_SPMMV Genome polyprotein OS=Sweet potato mild mott... 40.4 0.12 sp|Q66474|POLG_EC06C Genome polyprotein OS=Echovirus 6 (strain Ch... 40.0 0.12 sp|A4KZ49|POLG_TRMVU Genome polyprotein OS=Triticum mosaic virus ... 39.3 0.25 sp|Q76L40|POL1_BBWVS RNA1 polyprotein OS=Broad bean wilt virus 1 ... 38.9 0.28 sp|Q69014|POLG_SVM93 Genome polyprotein (Fragment) OS=Sapporo vir... 38.9 0.30 sp|Q672I1|POLG_SVSAP Genome polyprotein OS=Sapporo virus (isolate... 38.9 0.30 sp|P14879|PYR4_MICDP Phycobilisome 31.6 kDa linker polypeptide, p... 38.1 0.30 sp|Q9YID8|POLG_HPEV5 Genome polyprotein OS=Human parechovirus 5 (... 38.9 0.31 sp|O41174|POLG_PEV9U Genome polyprotein OS=Porcine enterovirus 9 ... 38.9 0.33 sp|P90245|POL1_BAMMN Genome polyprotein 1 OS=Barley mild mosaic v... 38.9 0.34 sp|Q66849|POLG_EC09H Genome polyprotein OS=Echovirus 9 (strain Hi... 38.9 0.35 sp|Q9WN78|POLG_EC30B Genome polyprotein OS=Echovirus 30 (strain B... 38.9 0.35 sp|P21404|POLG_CXA9 Genome polyprotein OS=Coxsackievirus A9 (stra... 38.5 0.38 sp|Q9QL88|POLG_CXB6S Genome polyprotein OS=Coxsackievirus B6 (str... 38.5 0.43 sp|E5D8F2|POLG_HRV15 Genome polyprotein OS=Human rhinovirus C (st... 38.5 0.44 sp|P89509|POLG_TUMVJ Genome polyprotein OS=Turnip mosaic virus (s... 38.5 0.44 sp|P08291|POLG_CXB1J Genome polyprotein OS=Coxsackievirus B1 (str... 38.1 0.53 sp|Q9YLJ1|POLG_EC05N Genome polyprotein OS=Echovirus 5 (strain No... 37.7 0.72 sp|Q66282|POLG_CXB3W Genome polyprotein OS=Coxsackievirus B3 (str... 37.7 0.73 sp|Q05057|POLG_PYFV1 Genome polyprotein OS=Parsnip yellow fleck v... 37.7 0.73 sp|Q04574|POL1_BAYMG Genome polyprotein 1 OS=Barley yellow mosaic... 37.7 0.77 sp|Q02597|POLG_TUMVQ Genome polyprotein OS=Turnip mosaic virus (s... 37.3 0.88 sp|P89657|RDRP_PMMVJ Replicase large subunit OS=Pepper mild mottl... 36.9 1.0 sp|Q8V736|POLG_CACV4 Genome polyprotein OS=Canine calicivirus (st... 36.9 1.1 sp|P16604|POLG_SVDVH Genome polyprotein OS=Swine vesicular diseas... 36.9 1.1 sp|P13900|POLG_SVDVU Genome polyprotein OS=Swine vesicular diseas... 36.9 1.2 sp|P29813|POLG_EC11G Genome polyprotein OS=Echovirus 11 (strain G... 36.9 1.2 sp|Q66577|POLG_EC09B Genome polyprotein OS=Echovirus 9 (strain Ba... 36.6 1.5 sp|P11398|PYR1_MASLA Phycobilisome 32.1 kDa linker polypeptide, p... 35.8 1.5 sp|Q9YLG5|POLG_CXB2O Genome polyprotein OS=Coxsackievirus B2 (str... 36.2 1.8 sp|P03302|POLG_POL3L Genome polyprotein OS=Poliovirus type 3 (str... 36.2 2.1 sp|P12916|POLG_HRV1B Genome polyprotein OS=Human rhinovirus 1B OX... 36.2 2.3 sp|P29098|RDRP_PMMVS Replicase large subunit OS=Pepper mild mottl... 35.8 2.6 sp|Q82122|POLG_HRV16 Genome polyprotein OS=Human rhinovirus 16 OX... 35.8 2.7 sp|P27641|XRCC5_MOUSE X-ray repair cross-complementing protein 5 ... 35.4 3.0 sp|Q03053|POLG_CXB5P Genome polyprotein OS=Coxsackievirus B5 (str... 35.4 3.1 sp|Q66575|POLG_EC12T Genome polyprotein OS=Echovirus 12 (strain T... 35.4 3.1 sp|Q8V5E0|POL1_BRAV RNA1 polyprotein OS=Blackcurrant reversion as... 35.4 3.3 sp|P06210|POLG_POL2L Genome polyprotein OS=Poliovirus type 2 (str... 35.4 3.4 sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 OS=Sc... 35.4 3.4 sp|P06209|POLG_POL32 Genome polyprotein OS=Poliovirus type 3 (str... 35.4 3.4 sp|Q12018|CDC53_YEAST Cell division control protein 53 OS=Sacchar... 35.0 3.7 sp|P22055|POLG_CXA21 Genome polyprotein OS=Coxsackievirus A21 (st... 35.4 3.7 sp|P36290|POLG_CXA24 Genome polyprotein OS=Coxsackievirus A24 (st... 35.4 3.9 sp|P03600|POL1_CPMVS RNA1 polyprotein OS=Cowpea mosaic virus (str... 35.0 4.1 sp|Q5ZM60|CCPG1_CHICK Cell cycle progression protein 1 OS=Gallus ... 35.0 4.3 sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain ... 34.6 4.4 sp|P23008|POLG_HRV1A Genome polyprotein OS=Human rhinovirus 1A OX... 35.0 4.6 sp|P03300|POLG_POL1M Genome polyprotein OS=Poliovirus type 1 (str... 35.0 5.2 sp|P03301|POLG_POL1S Genome polyprotein OS=Poliovirus type 1 (str... 34.6 5.5 sp|Q86887|POLG_CXB4E Genome polyprotein OS=Coxsackievirus B4 (str... 34.6 5.8 sp|O91734|POLG_EC01F Genome polyprotein OS=Echovirus 1 (strain Hu... 34.6 6.3 sp|Q9DSN9|POLN_ABPVR Replicase polyprotein OS=Acute bee paralysis... 34.6 6.6 sp|Q75BF1|SET5_EREGS Histone-lysine N-methyltransferase SET5 OS=E... 33.9 7.3 sp|P08292|POLG_CXB4J Genome polyprotein OS=Coxsackievirus B4 (str... 34.2 7.4 >sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 1536 bits (3976), Expect = 0.0, Method: Composition-based stats. Identities = 898/932 (96%), Positives = 916/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4370 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4430 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4490 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQ+LLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4550 RVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRAL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4610 LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4669 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4670 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4729 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4730 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4789 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4790 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4849 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4850 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4909 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4910 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4969 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH TCC+LSHRFYRLANECA Sbjct 4970 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECA 5029 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5030 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5089 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5090 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5149 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5150 NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5209 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5210 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5269 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5270 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5301 >sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 1534 bits (3972), Expect = 0.0, Method: Composition-based stats. Identities = 897/932 (96%), Positives = 914/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTG STDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4368 SADASTFLNRVCGVSAARLTPCGTGISTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4427 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+KDCPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4428 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT 4487 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4488 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4547 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4548 RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4607 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRAL AESH+D DL KP IKWDLLKYDFT ERL LFDRYFKYWDQTYHPNC+N Sbjct 4608 LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTAERLCLFDRYFKYWDQTYHPNCIN 4667 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4668 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4727 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4728 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4787 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4788 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4847 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4848 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4907 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4908 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4967 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA Sbjct 4968 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA 5027 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5028 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5087 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5088 RNLQHRLYECLYRNRDVDHEFVGEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5147 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5148 NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5207 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5208 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5267 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5268 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5299 >sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 1533 bits (3969), Expect = 0.0, Method: Composition-based stats. Identities = 932/932 (100%), Positives = 932/932 (100%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD Sbjct 4393 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 4452 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT Sbjct 4453 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 4512 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4513 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4572 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL Sbjct 4573 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 4632 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN Sbjct 4633 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 4692 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4693 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4752 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4753 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4812 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4813 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4872 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4873 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4932 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4933 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4992 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA Sbjct 4993 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 5052 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5053 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5112 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK Sbjct 5113 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 5172 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5173 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5232 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5233 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5292 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5293 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5324 >sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 1533 bits (3968), Expect = 0.0, Method: Composition-based stats. Identities = 891/932 (96%), Positives = 918/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN+KVAGFAKFLKTNCCRFQEKD Sbjct 4364 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4423 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4424 EEGNLLDSYFVVKRHTMSNYQHEETIYNLIKECPAVAVHDFFKFRVDGDMVPHISRQRLT 4483 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD+YFNKKDWYDFVENPD+LRVYANLGE Sbjct 4484 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDNYFNKKDWYDFVENPDVLRVYANLGE 4543 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVR+ALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4544 RVRRALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4603 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLT+AL AESH+D DL KP +KWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4604 LMPILTLTKALAAESHMDADLAKPLVKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4663 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4664 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4723 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4724 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4783 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4784 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4843 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT Sbjct 4844 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4903 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4904 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4963 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE+PHLMGWDYPKCDRAMPNMLRIMASL+LARKH+TCC+LSHRFYRLANECA Sbjct 4964 MLKTVYSDVESPHLMGWDYPKCDRAMPNMLRIMASLILARKHSTCCNLSHRFYRLANECA 5023 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5024 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5083 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5084 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5143 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+VLYYQNNVFMSEAKCWTETDLT+GPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5144 NFKAVLYYQNNVFMSEAKCWTETDLTRGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5203 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5204 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5263 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5264 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5295 >sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 1531 bits (3964), Expect = 0.0, Method: Composition-based stats. Identities = 894/932 (96%), Positives = 915/932 (98%), Gaps = 0/932 (0%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 SADA +FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYN++VAGFAKFLKTNCCRFQEKD Sbjct 4376 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKD 4435 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ NL+DSYFVVKRHT SNYQHEETIYNL+K+CPAVA HDFFKFR+DGDMVPHISRQRLT Sbjct 4436 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLT 4495 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE Sbjct 4496 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4555 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 RVRQALLKTVQFCDAMR+AGIVGVLTLDNQDLNGNWYDFGDF+Q PG GVP+VDSYYSL Sbjct 4556 RVRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4615 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 LMPILTLT+AL AESH+D DL KP IKWDLLKYDFTEERL LFDRYFKYWDQTYHPNC+N Sbjct 4616 LMPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4675 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN Sbjct 4676 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4735 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY Sbjct 4736 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4795 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF Sbjct 4796 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4855 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQD LFAYTKRNVIPTIT Sbjct 4856 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTIT 4915 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN Sbjct 4916 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4975 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLKTVYSDVE PHLMGWDYPKCDRAMPNMLRIMASLVLARKH+TCC+LSHRFYRLANECA Sbjct 4976 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECA 5035 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV Sbjct 5036 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5095 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQHRLYECLYRNRDVD +FV+EFYAYLRKHFSMMILSDDAVVC+NS YA+QGLVASIK Sbjct 5096 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5155 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 NFK+V YYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA Sbjct 5156 NFKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5215 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML Sbjct 5216 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5275 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ Sbjct 5276 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5307 >sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 1527 bits (3953), Expect = 0.0, Method: Composition-based stats. Identities = 659/934 (71%), Positives = 776/934 (83%), Gaps = 3/934 (0%) Query 2 ADAQSFLNRVCGV-SAARLTPCGTGTSTDVVYRAFDIYN--DKVAGFAKFLKTNCCRFQE 58 + +FLNRV G AR+ PC +G +TDVV+RAFDI N KVAG K+ KTN CRF E Sbjct 4468 SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4527 Query 59 KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR 118 D++ + +DS+FVVKRHT NY+ E+ Y+L+KDC AVA HDFF F +D PHI RQR Sbjct 4528 VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR 4587 Query 119 LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL 178 LT+YTM DLVYALRHFD+ NC+ LK ILV Y CCD YF+ K W+DFVENP+++ VY L Sbjct 4588 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL 4647 Query 179 GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY 238 GER+RQA+L TV+FCD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYY Sbjct 4648 GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4707 Query 239 SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC 298 S LMP+L++T L AE+H D DLTKP I+W LL+YD+T+ ++ LF++YFK WDQ YHPNC Sbjct 4708 SYLMPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNC 4767 Query 299 VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD 358 VNC DDRC+LHCANFNVLFS P TSFGP+VRKIFVDGVPFV+S GYH++ELG+V N D Sbjct 4768 VNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMD 4827 Query 359 VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD 418 V+LH RLS KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKD Sbjct 4828 VSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4887 Query 419 FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK 478 FYDF VSKGFFKEGSSV L+HFFFAQDG+AAI+DY YY YNLPTMCDI+Q+LF +EVVD+ Sbjct 4888 FYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDR 4947 Query 479 YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT 538 YF+ YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+S+SY++QD LFA TKRNV+PT Sbjct 4948 YFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPT 5007 Query 539 ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 ITQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRG+T VIGT+KFYGGW Sbjct 5008 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGW 5067 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 MLKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH+TCC+ + RFYRLANE Sbjct 5068 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANE 5127 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 CAQVLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GN I D+ Sbjct 5128 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDE 5187 Query 719 YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS 778 V+++Q LY +YR D FV+ +YA+L KHFSMMILSDD VVC+NS YA++G +AS Sbjct 5188 EVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIAS 5247 Query 779 IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL 838 I+NFK LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL Sbjct 5248 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRIL 5307 Query 839 GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH 898 AGCFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH Sbjct 5308 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGH 5367 Query 899 MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 MLD YSVML DN++++WE FY +YT T LQ Sbjct 5368 MLDSYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ 5401 >sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 1521 bits (3938), Expect = 0.0, Method: Composition-based stats. Identities = 660/934 (71%), Positives = 777/934 (83%), Gaps = 3/934 (0%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQE 58 + +FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + Sbjct 4421 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4480 Query 59 KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR 118 D++ + +DSYF+VKRHT SNY+ E+ Y+LLKDC AVA HDFF F +D PHI RQ Sbjct 4481 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4540 Query 119 LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL 178 LT+YTM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY L Sbjct 4541 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4600 Query 179 GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY 238 GER+RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYY Sbjct 4601 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4660 Query 239 SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC 298 S LMP+L++T L AE+H D D KP I+W LL+YD+T+ ++ LF++YFKYWDQTYHPNC Sbjct 4661 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 4720 Query 299 VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD 358 VNC DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D Sbjct 4721 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 4780 Query 359 VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD 418 N+H RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKD Sbjct 4781 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4840 Query 419 FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK 478 FYDF VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDK Sbjct 4841 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 4900 Query 479 YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT 538 YFD YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PT Sbjct 4901 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 4960 Query 539 ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 ITQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW Sbjct 4961 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 5020 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 MLKT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANE Sbjct 5021 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 5080 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 CAQVLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ Sbjct 5081 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 5140 Query 719 YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS 778 ++++Q LY +YR D FV+++YA+L KHFSMMILSDD VVC+NS YA++G VAS Sbjct 5141 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 5200 Query 779 IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL 838 I+NFK LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL Sbjct 5201 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5260 Query 839 GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH 898 AGCFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH Sbjct 5261 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 5320 Query 899 MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 MLD YSVML D+++++WE FY +Y+ T LQ Sbjct 5321 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5354 >sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 1518 bits (3929), Expect = 0.0, Method: Composition-based stats. Identities = 660/934 (71%), Positives = 778/934 (83%), Gaps = 3/934 (0%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQE 58 + +FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + Sbjct 4428 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4487 Query 59 KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR 118 D++ + +DSYF+VKRHT SNY+ E+ Y+LLKDC AVA HDFF F +D PHI RQ Sbjct 4488 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4547 Query 119 LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL 178 LT+YTM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY L Sbjct 4548 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4607 Query 179 GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY 238 GER+RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYY Sbjct 4608 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4667 Query 239 SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC 298 S LMP+L++T L AE+H D D KP I+W LL+YD+T+ ++ LF++YFK+WDQTYHPNC Sbjct 4668 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWLLLEYDYTDYKIGLFNKYFKHWDQTYHPNC 4727 Query 299 VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD 358 VNC DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D Sbjct 4728 VNCGDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 4787 Query 359 VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD 418 VN+H RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKD Sbjct 4788 VNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4847 Query 419 FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK 478 FYDF VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDK Sbjct 4848 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 4907 Query 479 YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT 538 YFD YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PT Sbjct 4908 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 4967 Query 539 ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 ITQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW Sbjct 4968 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 5027 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 MLKT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANE Sbjct 5028 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 5087 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 CAQVLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ Sbjct 5088 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 5147 Query 719 YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS 778 ++++Q LY +YR D FV+++YA+L KHFSMMILSDD VVC+NS YA++G VAS Sbjct 5148 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 5207 Query 779 IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL 838 I+NFK LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL Sbjct 5208 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5267 Query 839 GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH 898 AGCFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH Sbjct 5268 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 5327 Query 899 MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 MLD YSVML D+++++WE FY +Y+ T LQ Sbjct 5328 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5361 >sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 1509 bits (3906), Expect = 0.0, Method: Composition-based stats. Identities = 663/934 (71%), Positives = 771/934 (83%), Gaps = 4/934 (0%) Query 2 ADAQSFLNRVCGV-SAARLTPCGTGTSTDVVYRAFDIYN--DKVAGFAKFLKTNCCRFQE 58 + +FL RV G AR+ PC +G STDVV+RAFDI N KVAG K+ KTN CRF E Sbjct 4378 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4437 Query 59 KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR 118 D+ + +DSYFVVKRHT NY+ E+ Y+LL+DC AVA HDFF F +D PHI RQR Sbjct 4438 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 4497 Query 119 LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANL 178 LT+YTM DLVYALRHFD+ N + LK ILV Y CCD YF K W+DFVENP ++ VY L Sbjct 4498 LTEYTMMDLVYALRHFDQ-NSEVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 4556 Query 179 GERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYY 238 GERVRQA+L TV+FCD M AG+VGVLTLDNQDLNG WYDFGDF+ T PGSGV +VDSYY Sbjct 4557 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 4616 Query 239 SLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNC 298 S LMP+L++T L AE+H D D KP I+W L +YDFT+ +++LF++YFKYWDQTYH NC Sbjct 4617 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 4676 Query 299 VNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQD 358 VNC DDRC+LHCANFNVLF+ P T FGP+VRKIFVDGVPFVVS GYH++ELG+V N D Sbjct 4677 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 4736 Query 359 VNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKD 418 V+LH RLS KEL++YAADPAMH AS N LD RT+CFSVAALT + FQTV+PGNFN+D Sbjct 4737 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 4796 Query 419 FYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK 478 FYDF VSKGFFKEGSSV LKHFFFAQDGNAAI+DY+YY YNLPTMCDI+Q+LF +EVV+K Sbjct 4797 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 4856 Query 479 YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPT 538 YF+ YDGGC+NA++V+VNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNVIPT Sbjct 4857 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 4916 Query 539 ITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGW 598 +TQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW Sbjct 4917 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 4976 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 MLKT+Y DV+NPHLMGWDYPKCDRAMPNM RI ASL+LARKH TCC+ RFYRLANE Sbjct 4977 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 5036 Query 659 CAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 CAQVLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+ +GNKI DK Sbjct 5037 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 5096 Query 719 YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVAS 778 V+++Q LY +YR+ D FV+++YA+L KHFSMMILSDD VVC+NS YA++G +A Sbjct 5097 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 5156 Query 779 IKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRIL 838 I+NFK LYYQNNVFMSEAKCW ETDL KGPHEFCSQHT+ +K GDD +LPYPDPSRIL Sbjct 5157 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5216 Query 839 GAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGH 898 AGCFVDDIVKTDGTLM+ERFVSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGH Sbjct 5217 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH 5276 Query 899 MLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 MLD YSVML DN++++WE FY +Y+ T LQ Sbjct 5277 MLDSYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQ 5310 >sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 1479 bits (3829), Expect = 0.0, Method: Composition-based stats. Identities = 617/932 (66%), Positives = 742/932 (80%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNR+ G S ARL PC +G TDV RAFDI N AG + K NCCRFQ D Sbjct 4455 SKDTNFLNRIRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRVD 4514 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 ED N +D +FVVKR Y E+ Y L K+C VA+H+FF F ++G VPHI R+ L+ Sbjct 4515 EDGNKLDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLS 4574 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 K+TM DL YALRHFD +C TLKEIL+TY C++ YF KKDWYDFVENPDI+ VY LG Sbjct 4575 KFTMLDLCYALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKLGP 4634 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL T +F DA+ AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS Sbjct 4635 IFNRALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSY 4694 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL +E V+ Y ++DL++YDFT+ +L+LF +YFK+W TYHPN Sbjct 4695 MMPMLTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFTKYFKHWSMTYHPNTCE 4750 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4751 CEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVD 4810 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4811 THRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4870 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF Sbjct 4871 EFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYF 4930 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + Y+GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4931 EIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4990 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4991 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 5050 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECA Sbjct 5051 MLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECA 5110 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D + Sbjct 5111 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSI 5170 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR VD FV+E+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I Sbjct 5171 RELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANIS 5230 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5231 AFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGA 5290 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +L Sbjct 5291 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQIL 5350 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY VLQ Sbjct 5351 DSYSVILSTCDGQKFTDETFYKNMYLRSAVLQ 5382 >sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 1479 bits (3829), Expect = 0.0, Method: Composition-based stats. Identities = 618/932 (66%), Positives = 741/932 (80%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G TDV RAFDI N AG + K NCCRFQ D Sbjct 4403 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRAD 4462 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 ED N +D +FV+KR Y E+ Y L K+C VA+H+FF F ++G VPHI R+ L+ Sbjct 4463 EDGNTLDKFFVIKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLS 4522 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C TLKEIL+TY CD+ YF KKDWYDFVEN DI+ VY LG Sbjct 4523 KYTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENSDIINVYKKLGP 4582 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL T +F D + AG+VGVLTLDNQDL G WYDFGDF++T PG GV V DSYYS Sbjct 4583 IFNRALLNTAKFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSY 4642 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL +E ++ Y ++DL++YDFT+ +L+LF++YFKYW TYHPN Sbjct 4643 MMPMLTMCHALDSELFIN----GTYREFDLVQYDFTDFKLELFNKYFKYWSMTYHPNTCE 4698 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4699 CEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVD 4758 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4759 THRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4818 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF Sbjct 4819 EFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYF 4878 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4879 EIYDGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEVYAYTKRNVLPTLT 4938 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4939 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4998 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECA Sbjct 4999 MLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIISSLVLARKHDSCCSHTDRFYRLANECA 5058 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D + Sbjct 5059 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSI 5118 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS +AS+G +A+I Sbjct 5119 RELQKRLYSNVYRADHVDPAFVNEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANIS 5178 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5179 AFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGA 5238 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +L Sbjct 5239 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQIL 5298 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5299 DSYSVILSTCDGQKFTDETFYKNMYLRSAVMQ 5330 >sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 1476 bits (3822), Expect = 0.0, Method: Composition-based stats. Identities = 676/932 (73%), Positives = 770/932 (83%), Gaps = 1/932 (0%) Query 2 ADAQSFLNRVCGVS-AARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 A + FLNRV G S ARL P G+G D+V RAFDI N KVAGF LK NCCR+QE D Sbjct 4234 ARDECFLNRVRGTSGVARLVPLGSGVQPDIVLRAFDICNTKVAGFGLHLKNNCCRYQELD 4293 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 D +DSYFVVKRHT SNY E+ Y LKDC VA+HDFFKF I+G M PH+SR+RLT Sbjct 4294 ADGTQLDSYFVVKRHTESNYLLEQRCYEKLKDCGVVARHDFFKFNIEGVMTPHVSRERLT 4353 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTMADLVY+LRHFD NCDTLKEILV CC DYF++KDWYD VENPDI+RVY NLGE Sbjct 4354 KYTMADLVYSLRHFDNNNCDTLKEILVLRGCCTADYFDRKDWYDPVENPDIIRVYHNLGE 4413 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 VR+A+L V+ D+M G++GVLTLDNQDLNG WYDFGDFI+ G+GV V+D+YYSL Sbjct 4414 TVRKAVLSAVKMADSMVEQGLIGVLTLDNQDLNGQWYDFGDFIEGPAGAGVAVMDTYYSL 4473 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 MP+ T+T L AE HVD D +KP WD+ KYD+T+ + LF +YFKYWD YHPNCV Sbjct 4474 AMPVYTMTNMLAAECHVDGDFSKPKRVWDICKYDYTQFKYSLFSKYFKYWDMQYHPNCVA 4533 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCILHCANFN+LFS V P TSFGPLV+KI+VDGVPFVVSTGYH+RELGVV NQD+ Sbjct 4534 CADDRCILHCANFNILFSMVLPNTSFGPLVQKIYVDGVPFVVSTGYHYRELGVVMNQDIR 4593 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H+ RLS +ELLVYAADPAMH A+ N L DKRT C SVAA+T V FQTVKPG FN+DFY Sbjct 4594 QHAQRLSLRELLVYAADPAMHVAASNALADKRTVCMSVAAMTTGVTFQTVKPGQFNEDFY 4653 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +FAV GFFKEGS++ KHFF+AQDGNAAISDYDYYRYNLPTMCDI+QLLF +EVVDKYF Sbjct 4654 NFAVKCGFFKEGSTISFKHFFYAQDGNAAISDYDYYRYNLPTMCDIKQLLFSLEVVDKYF 4713 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 DCYDGGC+ A+QV+V N DKSAGFPFNK+GKARLYY+S+SY DQD LFAYTKRNV+PTIT Sbjct 4714 DCYDGGCLQASQVVVANYDKSAGFPFNKFGKARLYYESLSYADQDELFAYTKRNVLPTIT 4773 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSIAA RGA+VVIGT+KFYGGW+ Sbjct 4774 QMNLKYAISAKNRARTVAGVSIASTMTNRQFHQKMLKSIAAARGASVVIGTTKFYGGWNR 4833 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+T+ VENPHLMGWDYPKCDRAMPN+LRI ASL+LARKH TCC+ S RFYRLANECA Sbjct 4834 MLRTLCEGVENPHLMGWDYPKCDRAMPNLLRIFASLILARKHATCCNASERFYRLANECA 4893 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSEMV+CGG YVKPGGTSSGD+TTAYANSVFNICQAV+AN+N LS DGNKI YV Sbjct 4894 QVLSEMVLCGGGFYVKPGGTSSGDSTTAYANSVFNICQAVSANLNTFLSIDGNKIYTTYV 4953 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 + LQ RLY +YR+ VD + V ++Y YLRKHFSMMILSDD VVC+N+ YA +G VA I+ Sbjct 4954 QELQRRLYLGIYRSNTVDNELVLDYYNYLRKHFSMMILSDDGVVCYNADYAQKGYVADIQ 5013 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 FK +LY+QNNVFMSE+KCW E D+TKGPHEFCSQHTMLV + VYLPYPDPSRILGA Sbjct 5014 GFKELLYFQNNVFMSESKCWVEPDITKGPHEFCSQHTMLVDMKGEQVYLPYPDPSRILGA 5073 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTDGTLM+ER+VSLAIDAYPLTKHP+ EY +VF YLQYI+KLH+ELTGH+L Sbjct 5074 GCFVDDLLKTDGTLMMERYVSLAIDAYPLTKHPDPEYQNVFWCYLQYIKKLHEELTGHLL 5133 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSVML +DN S+YWE EFYE MY LQ Sbjct 5134 DTYSVMLASDNASKYWEVEFYENMYMESATLQ 5165 >sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 1466 bits (3794), Expect = 0.0, Method: Composition-based stats. Identities = 613/932 (66%), Positives = 738/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G TDV RAFDI N AG + K NC RFQ D Sbjct 4461 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCFRFQRVD 4520 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ N +D +FVVKR Y E+ Y L KDC VA+H+FF F ++G VPHI R+ L+ Sbjct 4521 EEGNKLDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKDLS 4580 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 K+TM DL YALRHFD +C TLKEIL+TY CD+ YF KKDWYDFVENPDI+ VY LG Sbjct 4581 KFTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKLGP 4640 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL T F D + AG+VGVLTLDNQDL G WYDFGDF++T P GV V DSYYS Sbjct 4641 IFNRALLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYYSY 4700 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL +E V+ Y ++DL++YDFT+ +L+LF++YFK+W TYHPN Sbjct 4701 MMPMLTMCHALDSELFVN----GTYREFDLVQYDFTDFKLELFNKYFKHWSMTYHPNTSE 4756 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4757 CEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVD 4816 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4817 THRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4876 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFVVEVV+KYF Sbjct 4877 EFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNKYF 4936 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + Y+GGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4937 EIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4996 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4997 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 5056 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH +CCS + RFYRLANECA Sbjct 5057 MLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECA 5116 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVL E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D + Sbjct 5117 QVLGEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSI 5176 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR VD FV+E+Y +L KHFSM+ILSDD VVC+NS +AS+G +A+I Sbjct 5177 RELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIANIS 5236 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 +F+ VLYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5237 DFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGA 5296 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +L Sbjct 5297 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQIL 5356 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D SV+L+ + ++ + FY+ MY V+Q Sbjct 5357 DSISVILSTCDGQKFTDETFYKNMYLRSAVMQ 5388 >sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 1464 bits (3791), Expect = 0.0, Method: Composition-based stats. Identities = 560/930 (60%), Positives = 706/930 (76%), Gaps = 6/930 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 +LNRV G SAARL P G+ T V+RAFD+YN VA +KFLK NC R + D+ Sbjct 4114 DSGYLNRVRGSSAARLEPL-NGSDTHHVFRAFDVYNRDVACISKFLKVNCVRLKNLDKH- 4171 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 D++++VK+ T S +HE++IYNL+ DC AVAKHDFF ++ + ++ RQ LT+YT Sbjct 4172 ---DAFWIVKKCTKSVMEHEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQDLTEYT 4228 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DL YALR+FDE NC+TLK+ILV CD+ YF+ K W+D VEN D+ RVYA LG V Sbjct 4229 MMDLCYALRNFDENNCETLKKILVVVGACDESYFDNKLWFDPVENEDVHRVYAKLGTIVA 4288 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 +A+LK V++CDAM GIVGV+TLDNQDLNG++YDFGDF+ + G GVP+ SYYS +MP Sbjct 4289 RAMLKCVKYCDAMVEQGIVGVITLDNQDLNGDFYDFGDFVTSVKGMGVPICTSYYSYMMP 4348 Query 244 ILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 ++ +T L +E + +D + + +DLL YDFTE ++ LF++YFK+W QTYHPNC +C Sbjct 4349 VMGMTNCLASECFIKSDIFGEDFRTFDLLAYDFTEHKVNLFNKYFKHWGQTYHPNCEDCH 4408 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 D+ CI+HCANFN LF+T P T+FGPL RK ++DGVP V + GYHF++LG+V N+D+NLH Sbjct 4409 DESCIVHCANFNTLFATTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNKDLNLH 4468 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 SSRL+ ELL + ADP++ AS L+DKRT CFSVAAL + QTVKPG+FN++FYDF Sbjct 4469 SSRLTINELLQFCADPSLLIASSPALVDKRTVCFSVAALGTGMTNQTVKPGHFNREFYDF 4528 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 S+GFF+EGS + LKHFFFAQ G+AA+ D+DYYRYN T+ DI Q V ++V YF Sbjct 4529 LRSQGFFEEGSELTLKHFFFAQKGDAAVRDFDYYRYNRTTVLDICQARVVYQIVQCYFGM 4588 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 Y+GGCI A +VIVNNL+KSAG+PFNK+GKA LYYDS+SYE+QD L+AYTKRN+IPT+TQ+ Sbjct 4589 YEGGCITAKEVIVNNLNKSAGYPFNKFGKAGLYYDSLSYEEQDDLYAYTKRNIIPTMTQL 4648 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K+RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NML Sbjct 4649 NLKYAISGKDRARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNML 4708 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 KT+ DVENPHLMGWDYPKCDRA+PNM+R++++++L KH CCS S R+YRL NE AQV Sbjct 4709 KTLIKDVENPHLMGWDYPKCDRALPNMIRMISAMILGSKHVNCCSSSDRYYRLCNELAQV 4768 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+EMV G YVKPGGT+SGDATTAYANSVFNI QA +ANVN LLS D N + V+ Sbjct 4769 LTEMVYSNGGFYVKPGGTTSGDATTAYANSVFNIFQATSANVNRLLSVDSNTCNNIEVKQ 4828 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 LQ +LY+C YR+ VD FV E++ YLRKHFSMMILSDD VVC+NS YA+ G VA + F Sbjct 4829 LQRKLYDCCYRSSSVDQSFVEEYFGYLRKHFSMMILSDDGVVCYNSEYAALGYVADLNAF 4888 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + D YLPYPDPSRIL AG Sbjct 4889 KAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGV 4948 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTD +++ER+VSLAIDAYPL+KH N EY VF + L +++ L+ L +LD Sbjct 4949 FVDDIVKTDPVILLERYVSLAIDAYPLSKHDNPEYRRVFTVMLDWVKHLYKTLNQGVLDS 5008 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV L D T+++W+ FY +MY +VLQ Sbjct 5009 FSVTLLEDATAKFWDESFYASMYEQSSVLQ 5038 >sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 1462 bits (3786), Expect = 0.0, Method: Composition-based stats. Identities = 613/932 (66%), Positives = 733/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ + +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+ Sbjct 4610 MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD 4665 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ Sbjct 4666 CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD 4725 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4726 THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4785 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4786 DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4845 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4846 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4905 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4906 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4965 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECA Sbjct 4966 MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECA 5025 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D + Sbjct 5026 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI 5085 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5086 RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS 5145 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5146 AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGA 5205 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +L Sbjct 5206 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQIL 5265 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5266 DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 1462 bits (3785), Expect = 0.0, Method: Composition-based stats. Identities = 613/932 (66%), Positives = 733/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ + +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+ Sbjct 4610 MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD 4665 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ Sbjct 4666 CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD 4725 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4726 THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4785 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4786 DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4845 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4846 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4905 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4906 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4965 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECA Sbjct 4966 MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECA 5025 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D + Sbjct 5026 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI 5085 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5086 RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS 5145 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5146 AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGA 5205 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +L Sbjct 5206 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQIL 5265 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5266 DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 1460 bits (3780), Expect = 0.0, Method: Composition-based stats. Identities = 556/932 (60%), Positives = 701/932 (75%), Gaps = 6/932 (1%) Query 2 ADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDE 61 + ++LNRV G SAARL PC GT T VYRAFDIYN VA KFLK NC R + D+ Sbjct 4101 STDMAYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDK 4159 Query 62 DDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTK 121 D+++VVKR T S +HE++IY+ L+ C A+A+HDFF ++ + ++ R+ LT+ Sbjct 4160 H----DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTE 4215 Query 122 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 181 YTM DL YALR+FDE NCD LK IL+ C++ YFN K W+D VEN DI RVYA LG Sbjct 4216 YTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTI 4275 Query 182 VRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLL 241 V +A+LK V+FCDAM GIVGV+TLDNQDLNG++YDFGDF + G GVP+ SYYS + Sbjct 4276 VARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYM 4335 Query 242 MPILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 MP++ +T L +E V +D + + +DLL+YDFTE + LF++YFKYW YHPNCV+ Sbjct 4336 MPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVD 4395 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C D++CI+HCANFN LFST P T+FGPL RK ++DGVP V + GYHF++LG+V N D+N Sbjct 4396 CSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLN 4455 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 LHSSRLS ELL + +DPA+ AS L+D+RT CFSVAAL + QTVKPG+FNK+FY Sbjct 4456 LHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFY 4515 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF + +GFF EGS + LKHFFFAQ +AA+ D+DYYRYN PT+ DI Q V ++V +YF Sbjct 4516 DFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYF 4575 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 D Y+GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+T Sbjct 4576 DIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMT 4635 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 Q+NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW N Sbjct 4636 QLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDN 4695 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 MLK + VENP LMGWDYPKCDRA+PNM+R++++++L KHTTCCS + RF+RL NE A Sbjct 4696 MLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELA 4755 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVL+E+V G Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N + V Sbjct 4756 QVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEV 4815 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 + LQ +LYEC YR+ VD FV E+Y YLRKHFSMMILSDD VVC+N+ YAS G VA + Sbjct 4816 KQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLN 4875 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 FK+VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + + YLPYPDPSRIL A Sbjct 4876 AFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSA 4935 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 G FVDD+VKTD +++ER+VSLAIDAYPL+KH N EY VF++ L +++ L+ L +L Sbjct 4936 GVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVL 4995 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 + +SV L D+T+++W+ FY MY VLQ Sbjct 4996 ESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 5027 >sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 1459 bits (3777), Expect = 0.0, Method: Composition-based stats. Identities = 613/932 (66%), Positives = 731/932 (78%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ + +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+ Sbjct 4610 MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD 4665 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ Sbjct 4666 CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD 4725 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4726 THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4785 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4786 DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4845 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4846 EIYDGGCIPAAQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4905 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4906 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4965 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANECA Sbjct 4966 MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECA 5025 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D + Sbjct 5026 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI 5085 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5086 RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS 5145 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYP PSRILGA Sbjct 5146 AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPVPSRILGA 5205 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL++EL +L Sbjct 5206 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQIL 5265 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5266 DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 1458 bits (3774), Expect = 0.0, Method: Composition-based stats. Identities = 615/932 (66%), Positives = 734/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDIYN VAG LK NCCRFQ D Sbjct 4370 SKDTNFLNRVRGASVDARLVPCASGLSTDVQLRAFDIYNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ + +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMKCYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +AL+ +F D + G+VGVLTLDNQDLNG WYDFGD++ PG GV + DSYYS Sbjct 4550 IFNRALVSATEFADKLVEVGLVGVLTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+ Sbjct 4610 IMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD 4665 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ Sbjct 4666 CQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD 4725 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4726 THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4785 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4786 DFVLSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4845 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4846 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4905 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4906 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4965 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH TCCS S RFYRLANECA Sbjct 4966 MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHETCCSQSDRFYRLANECA 5025 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D + Sbjct 5026 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI 5085 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5086 RALQKRLYSHVYRSDKVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS 5145 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYP+PSRILGA Sbjct 5146 AFQQVLYYQNNVFMSESKCWVEHDINNGPHEFCSQHTMLVKMDGDDVYLPYPNPSRILGA 5205 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL YI+KL+++L +L Sbjct 5206 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLAYIKKLYNDLGNQIL 5265 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5266 DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 1455 bits (3766), Expect = 0.0, Method: Composition-based stats. Identities = 622/932 (67%), Positives = 736/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D Sbjct 4408 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4467 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 +D N +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+ Sbjct 4468 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLS 4527 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG Sbjct 4528 KYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4587 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS Sbjct 4588 IFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4647 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+ Sbjct 4648 MMPMLTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVD 4703 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C +DRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4704 CDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVD 4763 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY Sbjct 4764 THRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFY 4823 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4824 EFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4883 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+T Sbjct 4884 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLT 4943 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4944 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 5003 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECA Sbjct 5004 MLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECA 5063 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D + Sbjct 5064 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSI 5123 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQ RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YA++G +A+I Sbjct 5124 RNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANKGYIANIS 5183 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGA Sbjct 5184 AFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA 5243 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +L Sbjct 5244 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGTQIL 5303 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ E FY+ MY V+Q Sbjct 5304 DSYSVILSTCDGLKFTEESFYKNMYLKSAVMQ 5335 >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 1455 bits (3766), Expect = 0.0, Method: Composition-based stats. Identities = 623/932 (67%), Positives = 736/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D Sbjct 4458 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4517 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 +D N +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+ Sbjct 4518 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLS 4577 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG Sbjct 4578 KYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4637 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS Sbjct 4638 IFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4697 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+ Sbjct 4698 MMPMLTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVD 4753 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C +DRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4754 CDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVD 4813 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY Sbjct 4814 THRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFY 4873 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4874 EFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4933 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+T Sbjct 4934 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLT 4993 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4994 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 5053 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECA Sbjct 5054 MLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECA 5113 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D + Sbjct 5114 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSI 5173 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQ RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5174 RNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANIS 5233 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGA Sbjct 5234 VFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA 5293 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +L Sbjct 5294 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGTQIL 5353 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ E FY+ MY V+Q Sbjct 5354 DSYSVILSTCDGLKFTEESFYKNMYLKSAVMQ 5385 >sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 1453 bits (3762), Expect = 0.0, Method: Composition-based stats. Identities = 612/932 (66%), Positives = 731/932 (78%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N VAG LK NCCRFQ D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 E+ + +D +FVVKR + Y E Y +KDC VA+HDFF F ++G VPHI R+ LT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L +IL Y C+ YF KKDWYDFVENPDI+ VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +AL+ +F D + G+VG+LTLDNQDLNG WYDFGD++ PG GV + DSYYS Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ AL E +V+ Y +DL++YDFT+ +L+LF++YFK+W YHPN V+ Sbjct 4610 MMPMLTMCHALDCELYVN----NAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVD 4665 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C DDRCI+ CANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELG+V N DV+ Sbjct 4666 CQDDRCIIRCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVD 4725 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPA+H AS + L D RT CFSVAA+T+ V FQTVKPGNFN+DFY Sbjct 4726 THRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFY 4785 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 DF +SKG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4786 DFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4845 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+T Sbjct 4846 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLT 4905 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4906 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 4965 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS S RFYRLANE A Sbjct 4966 MLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEYA 5025 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV AL+S +GNKI D + Sbjct 5026 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSI 5085 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 R LQ RLY +YR+ VD+ FV E+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5086 RALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANIS 5145 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+ GPHEFCSQHTMLVK D VYLPYPDPSRILGA Sbjct 5146 AFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGA 5205 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL++EL +L Sbjct 5206 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQIL 5265 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5266 DSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 1453 bits (3761), Expect = 0.0, Method: Composition-based stats. Identities = 622/932 (67%), Positives = 736/932 (79%), Gaps = 5/932 (1%) Query 2 ADAQSFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKD 60 + +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D Sbjct 4428 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4487 Query 61 EDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLT 120 +D N +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+ Sbjct 4488 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 4547 Query 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180 KYTM DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG Sbjct 4548 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4607 Query 181 RVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL 240 +ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS Sbjct 4608 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4667 Query 241 LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN 300 +MP+LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+ Sbjct 4668 MMPMLTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVD 4723 Query 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360 C +DRCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ Sbjct 4724 CDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVD 4783 Query 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420 H RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY Sbjct 4784 THRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFY 4843 Query 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480 +F SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF Sbjct 4844 EFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 4903 Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540 + YDGGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+T Sbjct 4904 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLT 4963 Query 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW + Sbjct 4964 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 5023 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 ML+ + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECA Sbjct 5024 MLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECA 5083 Query 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 QVLSE+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D + Sbjct 5084 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSI 5143 Query 721 RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 RNLQ RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I Sbjct 5144 RNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANIS 5203 Query 781 NFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840 F+ VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGA Sbjct 5204 VFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA 5263 Query 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900 GCFVDD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +L Sbjct 5264 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQIL 5323 Query 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 D YSV+L+ + ++ + FY+ MY V+Q Sbjct 5324 DSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 5355 >sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 1444 bits (3738), Expect = 0.0, Method: Composition-based stats. Identities = 546/930 (59%), Positives = 696/930 (75%), Gaps = 6/930 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 S+LNRV G SAARL PC GT D RAFD+YN + K LK+NC RF+ D+D Sbjct 4071 DNSYLNRVRGSSAARLEPC-NGTDIDYCVRAFDVYNKDASFIGKNLKSNCVRFKNVDKD- 4128 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 D++++VKR S HE+++YNLLK C AVAKHDFF + + ++SRQ LTKYT Sbjct 4129 ---DAFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQDLTKYT 4185 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DL +ALR+FDE +C+ KEILV CC DYF K+W+D +EN DI RVYA LG+ V Sbjct 4186 MMDLCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAALGKVVA 4245 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 A+LK V FCD M G+VGVLTLDNQDLNGN+YDFGDF+ PG G+P SYYS +MP Sbjct 4246 NAMLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYYSYMMP 4305 Query 244 ILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 ++ +T L +E + +D + + +DLLKYDFTE + LF++YFKYW Q YHP+CV+C Sbjct 4306 VMGMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPDCVDCH 4365 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 D+ CILHC+NFN LF+T P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN H Sbjct 4366 DEMCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNKDVNTH 4425 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 S+RL+ ELL + DP + AS L+DKRT CFSVAAL+ + QTVKPG+FNK+FYDF Sbjct 4426 STRLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNKEFYDF 4485 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 S+GFF EGS + LKHFFF Q G+AAI D+DYYRYN PTM DI Q +V +YFDC Sbjct 4486 LRSQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAARYFDC 4545 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 Y+GGCI + +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDA+F+ TKRN++PT+TQ+ Sbjct 4546 YEGGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILPTMTQL 4605 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K RARTV GVS+ +TMT RQFHQK LKSI ATR ATVVIGT+KFYGGW NML Sbjct 4606 NLKYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGGWDNML 4665 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 K + +DV++P LMGWDYPKCDRAMP+M+R++++++L KH TCC+ S +FYRL+NE AQV Sbjct 4666 KNLMADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSNELAQV 4725 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+E+V G Y KPGGT+SGDATTAYANSVFNI QAV++N+N +LS + + + V+ Sbjct 4726 LTEVVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNNFNVKK 4785 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 LQ +LY+ YRN +VD FV++FY YL+KHFSMMILSDD+VVC+N TYA G +A I F Sbjct 4786 LQRQLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIADISAF 4845 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+ LYYQN VFMS AKCWTE DL+ GPHEFCSQHTM + + YLPYPDPSRI+ AG Sbjct 4846 KATLYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRIISAGV 4905 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDI KTD +++ER+VSLAIDAYPL+KHP EY VF+ L +++ L+ L +L+ Sbjct 4906 FVDDITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNEGVLES 4965 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV L +++ S++W+ FY +MY TVLQ Sbjct 4966 FSVTLLDEHESKFWDESFYASMYEKSTVLQ 4995 >sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 1424 bits (3687), Expect = 0.0, Method: Composition-based stats. Identities = 546/930 (59%), Positives = 690/930 (74%), Gaps = 6/930 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 S+LNR G SAARL PC GT D RAFDIYN V+ K LK NC RF+ D Sbjct 4046 DISYLNRARGSSAARLEPC-NGTDIDKCVRAFDIYNKNVSFLGKCLKMNCVRFKNAD--- 4101 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 L D YFV+KR T S +HE+++YNLL A+A+HDFF ++ + ++SR LTKYT Sbjct 4102 -LKDGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWKDGRVIYGNVSRHNLTKYT 4160 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DLVYA+R+FDE NCD LKE+LV CCD+ YF+ K WYD VEN DI RVYA+LG+ V Sbjct 4161 MMDLVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASLGKIVA 4220 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 +A+LK V CDAM G+VGVLTLDNQDLNGN+YDFGDF+ + P GVP SYYS +MP Sbjct 4221 RAMLKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYYSYMMP 4280 Query 244 ILTLTRALTAESHVDTD-LTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 I+ LT L +E V +D + +DLLKYDFTE + LF++YFK+W YHPNC +C Sbjct 4281 IMGLTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPNCSDCY 4340 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 DD C++HCANFN LF+T P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN H Sbjct 4341 DDMCVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNKDVNTH 4400 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 S RL+ ELL + DP++ AS L+D+RT CFSVAAL+ + Q VKPG+FN++FY+F Sbjct 4401 SVRLTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNEEFYNF 4460 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 +GFF EGS + LKHFFFAQ+G+AA+ D+D+YRYN PT+ DI Q ++V +YFD Sbjct 4461 LRLRGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVSRYFDI 4520 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 Y+GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDALFA TKRNV+PT+TQ+ Sbjct 4521 YEGGCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLPTMTQL 4580 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSI TR ATVVIGT+KFYGGW+NML Sbjct 4581 NLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGGWNNML 4640 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 +T+ VENP LMGWDYPKCDRA+PNM+R+++++VL KH CC+ + RFYRL NE AQV Sbjct 4641 RTLIDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGNELAQV 4700 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+E+V G Y KPGGT+SGDA+TAYANS+FNI QAV++N+N LLS + + VR+ Sbjct 4701 LTEVVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNNVNVRD 4760 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 LQ RLY+ YR V+ F++++Y YLRKHFSMMILSDD VVC+N YA G +A I F Sbjct 4761 LQRRLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIADISAF 4820 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+ LYYQNNVFMS +KCW E DLTKGPHEFCSQHTM + D YLPYPDPSRIL AG Sbjct 4821 KATLYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGV 4880 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDD+VKTD +++ER+VSLAIDAYPL+KHPN EY VF++ L +++ L+ L +L+ Sbjct 4881 FVDDVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNEGVLES 4940 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV L ++ ++W +FY +MY T+LQ Sbjct 4941 FSVTLLDNQEDKFWCEDFYASMYENSTILQ 4970 >sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 1409 bits (3647), Expect = 0.0, Method: Composition-based stats. Identities = 552/930 (59%), Positives = 689/930 (74%), Gaps = 6/930 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 QS+LNRV G SAARL PC GT D V RAFDIYN VA KFLKTNC RF+ D+ Sbjct 4003 DQSYLNRVRGSSAARLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKH- 4060 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 D+Y++VKR T + HE+ YN LKD AVA+HDFF ++ +++R+ LTKYT Sbjct 4061 ---DAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKYT 4117 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DL YA+R+FDE NC+ LKEILVT C +++F KDW+D VEN I VYA LG V Sbjct 4118 MMDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIVA 4177 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 A+LK V FCDA+ G +GV+TLDNQDLNGN+YDFGDF++T PG G V SYYS +MP Sbjct 4178 NAMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMMP 4237 Query 244 ILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 ++ +T L +E+ V +D+ Y ++DLL YDFTE + LF +YFKYWD+TYHPNC +C Sbjct 4238 LMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCSDCT 4297 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 D CI+HCANFN LFS P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L Sbjct 4298 SDECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLD 4357 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 + +LS +LL + DP + AS LLD+RT CFS+AAL+ + +QTVKPG+FNKDFYDF Sbjct 4358 TMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYDF 4417 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 +GFF+EGS + LKHFFFAQ G AA++D++YYRYN T+ DI Q FV ++V KYF+C Sbjct 4418 ITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFEC 4477 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 YDGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQM Sbjct 4478 YDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQM 4537 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NML Sbjct 4538 NLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNML 4597 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 K + DV+N LMGWDYPKCDRA+PNM+R+ ++++L KH CC+ + RFYRL+NE AQV Sbjct 4598 KNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQV 4657 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+E+V C G Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL D N + V++ Sbjct 4658 LTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKS 4717 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 +Q ++Y+ YR+ +D +FV E+++YLRKHFSMMILSDD VVC+N YA G VA I F Sbjct 4718 IQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAF 4777 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+ LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ + D YLPYPDPSRIL AG Sbjct 4778 KATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGV 4837 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTD +M+ER+VSLAIDAYPLTKHP Y VF+ L +++ L L +LD Sbjct 4838 FVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDS 4897 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV + + ++W EFY ++Y TVLQ Sbjct 4898 FSVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4927 >sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 1381 bits (3575), Expect = 0.0, Method: Composition-based stats. Identities = 547/930 (59%), Positives = 684/930 (74%), Gaps = 6/930 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDD 63 QS+LN + L PC GT D V RAFDIYN VA KFLKTNC RF+ D+ Sbjct 4028 DQSYLNECGVLVQLDLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKH- 4085 Query 64 NLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYT 123 D+Y+VVKR T S HE+ YN LKD VA+HDFF ++ +++R+ LTKYT Sbjct 4086 ---DAYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYT 4142 Query 124 MADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVR 183 M DL YA+R+FDE NC+ LKEILVT C++ +F KDW+D VEN I VYA LG V Sbjct 4143 MMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVA 4202 Query 184 QALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMP 243 A+LK V FCDA+ G +G++TLDNQDLNGN+YDFGDF++TTPG G V SYYS +MP Sbjct 4203 NAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMMP 4262 Query 244 ILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 302 ++ +T L +E+ V +D+ Y ++DLL YDFT+ + KLF +YFK+WD+TYHPNC +C Sbjct 4263 LMGMTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDCT 4322 Query 303 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 362 D CI+HCANFN LFS P T+FGPLVRK+ +DGVP VV+ GYHF++LG+V N DV L Sbjct 4323 SDECIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLD 4382 Query 363 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 422 + +LS +LL + DP + AS LLD+RT CFS+AAL+ V +QTVKPG+FNKDFYDF Sbjct 4383 TMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYDF 4442 Query 423 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 482 +GFF+EGS + LKHFFFAQ G AA++D++YYRYN T+ DI Q FV ++V KYF+C Sbjct 4443 ITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFEC 4502 Query 483 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 542 YDGGCINA +V+V N DKSAG+P NK+GKARLYY+++SYE+QDALFA TKRNV+PT+TQM Sbjct 4503 YDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQM 4562 Query 543 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602 NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSIAATR ATVVIG++KFYGGW NML Sbjct 4563 NLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNML 4622 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 K + DV+N LMGWDYPKCDRA+PNM+R+ ++++L KH CC+ S RFYRL+NE AQV Sbjct 4623 KNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQV 4682 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 722 L+E+V C G Y KPGGT+SGD TTAYANS FNI QAV+ANVN LL D N + V++ Sbjct 4683 LTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKS 4742 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 782 +Q ++Y+ YR+ +D +FV E+++YLRKHFSMMILSDD VVC+N YA G VA I F Sbjct 4743 IQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAF 4802 Query 783 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 842 K+ LYYQNNVFMS +KCW E DL+ GPHEFCSQHT+ + D YLPYPDPSRIL AG Sbjct 4803 KATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGV 4862 Query 843 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 902 FVDDIVKTD +M+ER+VSLAIDAYPLTKHP Y VF+ L +++ L L +LD Sbjct 4863 FVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDS 4922 Query 903 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 +SV + + ++W EFY ++Y TVLQ Sbjct 4923 FSVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4952 >sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=rep PE=3 SV=1 Length=6629 Score = 1377 bits (3563), Expect = 0.0, Method: Composition-based stats. Identities = 579/937 (62%), Positives = 705/937 (75%), Gaps = 13/937 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE----K 59 +++LNRV G S ARL P +G DVV RAFD+ N + AG + LK NC RFQE + Sbjct 3937 DKNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTE 3996 Query 60 DEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRL 119 D + +DSYFVVK+ T SNY+HE++ Y LK A HDFF F + + +ISRQRL Sbjct 3997 DGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRL 4052 Query 120 TKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFN-KKDWYDFVENPDILRVY 175 TKYTM D YALRHFD +C+ LKEILVTY C +D +F KDWYD +EN + Sbjct 4053 TKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVML 4112 Query 176 ANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVD 235 A +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D Sbjct 4113 AKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFD 4172 Query 236 SYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYH 295 +YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ +LF +YFKYWDQ YH Sbjct 4173 TYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYH 4232 Query 296 PNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVH 355 PNC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ Sbjct 4233 PNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIM 4292 Query 356 NQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNF 415 NQD + S++ +L+ + DPA+ + N L+D RT+CFSV ALT+ + QTVKPG+F Sbjct 4293 NQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHF 4352 Query 416 NKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV 475 NKDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV Sbjct 4353 NKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEV 4412 Query 476 VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNV 535 KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK+NV Sbjct 4413 TSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNV 4471 Query 536 IPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFY 595 +PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A+VVIGT+KFY Sbjct 4472 LPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFY 4531 Query 596 GGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRL 655 GGW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL Sbjct 4532 GGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRL 4591 Query 656 ANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKI 715 NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS I Sbjct 4592 YNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDI 4651 Query 716 ADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGL 775 +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A QGL Sbjct 4652 VYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGL 4711 Query 776 VASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPS 835 VA I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYPDPS Sbjct 4712 VADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPS 4771 Query 836 RILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDEL 895 RILGA FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ EL Sbjct 4772 RILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQEL 4831 Query 896 TGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 + +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4832 SQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 SV=1 Length=6629 Score = 1377 bits (3563), Expect = 0.0, Method: Composition-based stats. Identities = 579/937 (62%), Positives = 705/937 (75%), Gaps = 13/937 (1%) Query 4 AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE----K 59 +++LNRV G S ARL P +G DVV RAFD+ N + AG + LK NC RFQE + Sbjct 3937 DKNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTE 3996 Query 60 DEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRL 119 D + +DSYFVVK+ T SNY+HE++ Y LK A HDFF F + + +ISRQRL Sbjct 3997 DGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFNKN---IYNISRQRL 4052 Query 120 TKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFN-KKDWYDFVENPDILRVY 175 TKYTM D YALRHFD +C+ LKEILVTY C +D +F KDWYD +EN + Sbjct 4053 TKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYYVML 4112 Query 176 ANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVD 235 A +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVPV D Sbjct 4113 AKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFD 4172 Query 236 SYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYH 295 +YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ +LF +YFKYWDQ YH Sbjct 4173 TYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQEYH 4232 Query 296 PNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVH 355 PNC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELGV+ Sbjct 4233 PNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVIM 4292 Query 356 NQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNF 415 NQD + S++ +L+ + DPA+ + N L+D RT+CFSV ALT+ + QTVKPG+F Sbjct 4293 NQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPGHF 4352 Query 416 NKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV 475 NKDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DI QLLF +EV Sbjct 4353 NKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCLEV 4412 Query 476 VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNV 535 KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK+NV Sbjct 4413 TSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKKNV 4471 Query 536 IPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFY 595 +PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A+VVIGT+KFY Sbjct 4472 LPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTKFY 4531 Query 596 GGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRL 655 GGW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CCS S R YRL Sbjct 4532 GGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIYRL 4591 Query 656 ANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKI 715 NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS I Sbjct 4592 YNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRDI 4651 Query 716 ADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGL 775 +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A QGL Sbjct 4652 VYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQGL 4711 Query 776 VASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPS 835 VA I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYPDPS Sbjct 4712 VADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPDPS 4771 Query 836 RILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDEL 895 RILGA FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ EL Sbjct 4772 RILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQEL 4831 Query 896 TGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 + +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4832 SQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1 Length=6631 Score = 1372 bits (3550), Expect = 0.0, Method: Composition-based stats. Identities = 579/940 (62%), Positives = 701/940 (75%), Gaps = 13/940 (1%) Query 1 SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQE-- 58 S +++LNRV G S ARL P G DVV RAFD+ N + AG + LK NC RFQE Sbjct 3936 SGFDKNYLNRVRGSSEARLIPLANGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQEVR 3995 Query 59 --KDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISR 116 +D + DSYFVVK+ T SNY+HE+ Y LK A HDFF F + + +ISR Sbjct 3996 DTEDGNLEYCDSYFVVKQTTPSNYEHEKACYEDLKS-EVTADHDFFVFNKN---IYNISR 4051 Query 117 QRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD---DYFN-KKDWYDFVENPDIL 172 QRLTKYTM D YALRHFD +C+ LKEILVTY C +D +F KDWYD +ENP Sbjct 4052 QRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENPKYY 4111 Query 173 RVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVP 232 + A +G VR+ALL ++F + M G VGV+TLDNQDLNG +YDFGDF +T PG+GVP Sbjct 4112 AMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVP 4171 Query 233 VVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQ 292 V D+YYS +MPI+ +T AL E + + D+ K Y +DLLKYD+TEE+ LF +YFKYWDQ Sbjct 4172 VFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQDLFQKYFKYWDQ 4231 Query 293 TYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELG 352 YHPNC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF+ + GYH +ELG Sbjct 4232 EYHPNCRDCSDDRCLIHCANFNILFSTLVPQTSFGNLCRKVFVDGVPFIATCGYHSKELG 4291 Query 353 VVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKP 412 V+ NQD + S++ +L+ + DPA+ + N L+D RT+CFSV AL + + QTVKP Sbjct 4292 VIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNKLVDLRTSCFSVCALASGITHQTVKP 4351 Query 413 GNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFV 472 G+FNKDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN PTM DIRQLLF Sbjct 4352 GHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDIRQLLFC 4411 Query 473 VEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK 532 +EV KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS E+QD LF TK Sbjct 4412 LEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFESTK 4470 Query 533 RNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTS 592 +NV+PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI TR A VVIGT+ Sbjct 4471 KNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNAPVVIGTT 4530 Query 593 KFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRF 652 KFYGGW NML+ + VE+P LMGWDYPKCDRAMPN+LRI ASLVLARKHT CC+ S R Sbjct 4531 KFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCTWSERV 4590 Query 653 YRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDG 712 YRL NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA +ANV LLS Sbjct 4591 YRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVIT 4650 Query 713 NKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYAS 772 I +++LQ+ LY+ +YR + D FV +FY+YL K+FS+MILSDD VVC+N+T A Sbjct 4651 RDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAK 4710 Query 773 QGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYP 832 QGLVA I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV+ + YLPYP Sbjct 4711 QGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPRYLPYP 4770 Query 833 DPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLH 892 DPSRIL A FVDD+ KT+ ++ER+++LAIDAYPL H N+EY VF + L YIRKL+ Sbjct 4771 DPSRILCACVFVDDLDKTESVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLSYIRKLY 4830 Query 893 DELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 EL+ +ML YS ++ D S++WE EFYE MY T LQ Sbjct 4831 QELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4870 >sp|Q9WQ77|R1AB_CVRSD Replicase polyprotein 1ab (Fragment) OS=Rat coronavirus (strain 681) OX=33740 GN=rep PE=3 SV=1 Length=307 Score = 475 bits (1222), Expect = 2e-160, Method: Composition-based stats. Identities = 225/307 (73%), Positives = 266/307 (87%), Gaps = 0/307 (0%) Query 506 FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST 565 FNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNLKYAISAKNRARTVAGVSI ST Sbjct 1 FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 60 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA 625 MT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ + DV++P LMGWDYPKCDRA Sbjct 61 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA 120 Query 626 MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA 685 MPN+LRI++SLVLARKH +CCS + RFYRLANECAQVLSE+VMCGG YVKPGGTSSGDA Sbjct 121 MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 180 Query 686 TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF 745 TTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ RLY +YR VD FV+E+ Sbjct 181 TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY 240 Query 746 YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL 805 Y +L KHFSMMILSDD VVC+NS +AS+G +A+I F+ VLYYQNNVFMSEAKCW ETD+ Sbjct 241 YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI 300 Query 806 TKGPHEF 812 KGPHEF Sbjct 301 EKGPHEF 307 >sp|Q9WQ76|R1AB_CVTMI Replicase polyprotein 1ab (Fragment) OS=Turkey coronavirus (strain Minnesota) OX=231430 GN=rep PE=3 SV=1 Length=306 Score = 444 bits (1142), Expect = 2e-148, Method: Composition-based stats. Identities = 213/307 (69%), Positives = 248/307 (81%), Gaps = 1/307 (0%) Query 506 FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICST 565 FNK+GKARLYY+ MS E+QD LF TK+NV+PTITQMNLKYAISAKNRARTVAGVSI ST Sbjct 1 FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST 59 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA 625 MTNRQFHQK+LKSI TR A VVIGT+KFYGGW NML+ + VE+P LMGWDYPKCDRA Sbjct 60 MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA 119 Query 626 MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDA 685 MPN+LRI ASLVLARKHT CC+ S R YRL NECAQVLSE V+ G +YVKPGGTSSGDA Sbjct 120 MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA 179 Query 686 TTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEF 745 TTAYANSVFNI QA +ANV LLS I +++LQ+ LY+ +YR + D FV +F Sbjct 180 TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF 239 Query 746 YAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL 805 Y+YL K+FS+MI +DD VVC+N+T A QGLVA I F+ +LYYQNNV+M+++KCW E DL Sbjct 240 YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL 299 Query 806 TKGPHEF 812 KGPHEF Sbjct 300 EKGPHEF 306 >sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156 GN=rep PE=1 SV=1 Length=6857 Score = 475 bits (1223), Expect = 3e-143, Method: Composition-based stats. Identities = 123/519 (24%), Positives = 224/519 (43%), Gaps = 55/519 (11%) Query 418 DFYDFAVSKGFFKEGSSV--ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV 475 FYD + + G K+F++ + A++D YY Y + L V + Sbjct 4908 PFYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCYYDYQGTGFYSPKLLAGVYDF 4967 Query 476 VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRN 534 + + +CY IN + + N G + Y ++ E+ LF Y ++ Sbjct 4968 MKRVTECYR---INERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENIARLFEYAQKA 5024 Query 535 VIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSI---AATRGATVVIGT 591 +P T++ K+A+SAK RARTV+ S ++ R H+ + + A G +IG Sbjct 5025 PLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSGGFCLIGV 5084 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHR 651 SK+ + LK Y +E + G DY KCDR P R + + +L + Sbjct 5085 SKYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTFPLSFRALTAALLYE----LGEWDEK 5140 Query 652 FYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS-- 709 + NE + + ++C G L KPGGTSSGDATTA++N+ +N +LS Sbjct 5141 SWLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDL 5200 Query 710 TDGNKIADKYVRNL----QHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVC 765 ++GNK+ N ++++ L ++ F+N LSDD+ + Sbjct 5201 SEGNKVMRIAAHNAYTTGDYQVFNTLLEDQFQTNYFLN-------------FLSDDSFI- 5246 Query 766 FNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDD 825 F+ A + + + +NF + L + + + K W+ + EFCS H ++K + Sbjct 5247 FSKPEALK--IFTCENFSNKLQTILHTKVDQTKSWSTKGHIE---EFCSAH--IIKTDGE 5299 Query 826 YVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYL 885 Y +L P R+L + +D + D M RFV++ ++ +++ + + +F ++L Sbjct 5300 YHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFL 5355 Query 886 QYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAM 924 +++ + + + E EFYE + Sbjct 5356 DKVQQFRKDY-----------CCDPCPPQLLEREFYENL 5383 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 73/188 (39%), Gaps = 30/188 (16%) Query 35 FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCP 94 D+ + AG K K+N + + + F++KR E P Sbjct 4596 IDLATEYNAGIVKVNKSNTHSVEYQSKR-------FMIKR----VKDQSEFALAKTAFLP 4644 Query 95 AVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD 154 ++ H + + R +++++ DLVYA+ D+ D L E +N D Sbjct 4645 SIIPHHM----EKQNGEWFLIRGPTSQWSLGDLVYAIWLGDQ---DYLSECGFVFNPSRD 4697 Query 155 DYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNG 214 ++ + + F+ N + A+L ++ + LTLDN DLNG Sbjct 4698 EFLDDANQRSFLAN------------LLEPAILNFSHIYWQVKMCKVPYKLTLDNVDLNG 4745 Query 215 NWYDFGDF 222 YDFGD+ Sbjct 4746 QLYDFGDY 4753 >sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX=360393 GN=rep PE=2 SV=1 Length=6733 Score = 467 bits (1201), Expect = 3e-140, Method: Composition-based stats. Identities = 119/525 (23%), Positives = 216/525 (41%), Gaps = 55/525 (10%) Query 418 DFYDFAVSKGFFKEGSSV--ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEV 475 YD + + G K+F++ + A++D +Y Y + L V + Sbjct 4784 PLYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCFYDYQGTGFYSPKLLAGVYDF 4843 Query 476 VDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRN 534 + + CY + + + N G + Y ++ E+ LF Y ++ Sbjct 4844 MKRVTTCYK---TDERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENITKLFEYAQKA 4900 Query 535 VIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSI---AATRGATVVIGT 591 +P T++ K+A+SAK RARTV+ S ++ R H+ + + A +IG Sbjct 4901 PLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSQGFCLIGV 4960 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHR 651 SK+ + LK Y +E + G DY KCDR P R + + +L Sbjct 4961 SKYGLKFSKFLKDKYGAIEQFDVFGSDYTKCDRTFPLSFRALTAALLYE----LGGWEED 5016 Query 652 FYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS-- 709 + NE + + ++C G L KPGGTSSGDATTA++N+ +N +LS Sbjct 5017 SWLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDL 5076 Query 710 TDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFS----MMILSDDAVVC 765 +D NK+ +R H Y F L + F + LSDD+ + Sbjct 5077 SDCNKV----MRIAAHNAYTT---------GDYGVFNTLLEEQFQTNYFLNFLSDDSFI- 5122 Query 766 FNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDD 825 F+ A + + + +NF + L + + K W T + EFCS H ++K + Sbjct 5123 FSKPGALK--IFTCENFSNKLQTILHTKVDLTKSWATTGHIE---EFCSAH--IIKTDGE 5175 Query 826 YVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYL 885 Y +L P R+L + +D + D M RFV++ ++ +++ + + +F ++L Sbjct 5176 YHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFL 5231 Query 886 QYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTV 930 +++ + + ++ + +FYE + Sbjct 5232 DKVQQFRKDY-----------CCDPCPTQLLDRQFYENLVFTSNT 5265 Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 41/188 (22%), Positives = 74/188 (39%), Gaps = 30/188 (16%) Query 35 FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCP 94 D+ + AG K K+N + F++KR QHE + P Sbjct 4472 IDLATEYNAGIVKVNKSNTHSVE-------YKGQRFMIKRVKD---QHEFAL-ARTAFLP 4520 Query 95 AVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD 154 ++ H + + + R T++++ DLVYA+ D+ L E +N D Sbjct 4521 SIIPHHM----VHQNGEWFLVRGPTTQWSLGDLVYAIWLGDQ---AYLDECGFVFNPSRD 4573 Query 155 DYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNG 214 ++ + + ++ N + A+L + ++ + +TLDN DL G Sbjct 4574 EFLDDANQRSYLAN------------LLEPAILSFCEIFHCVKGCQVPYKITLDNLDLKG 4621 Query 215 NWYDFGDF 222 YDFGD+ Sbjct 4622 QLYDFGDY 4629 >sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=rep PE=1 SV=1 Length=6872 Score = 403 bits (1036), Expect = 1e-118, Method: Composition-based stats. Identities = 120/539 (22%), Positives = 211/539 (39%), Gaps = 67/539 (12%) Query 415 FNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGN--AAISDYDYYRYNLPTMCDIRQLLFV 472 + + FYD + + G ++ + Q G A+ D+ YY YN P D L V Sbjct 4888 YKRPFYDLDLIQRMNSAGLNLSETTGYHYQCGTTTEAVEDFMYYNYNSPKSFDPSYLKSV 4947 Query 473 VEVVD-KYFDCYDGGCINANQVIVNNLDKSAGFP-FNKWGK------ARLYYDSMSYEDQ 524 + K+ I+ ++ L+ +G P + G + ++++ + Sbjct 4948 YTYMRDKFMKI-----ISTDE----KLNHQSGAPRMSSMGVGVSGFFQKTVWNALPEDFS 4998 Query 525 DALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRG 584 L + V+P T + K+ K R RT+ G S ++ R H+ + + T Sbjct 4999 PRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSSFITSSIFRMLHKPVTNKMVQTAQ 5058 Query 585 ATV---VIGTSKFYGGWHNMLKTVYSD-VENPHLMGWDYPKCDRAMPNMLRIMASLVLAR 640 A + +IG SKF G+H L + + +E+ +MG DY KCDR+ P + R +++ + Sbjct 5059 ANIGPFLIGISKFNLGFHKYLSAHHPNGIEDCQVMGADYTKCDRSFPVVCRALSAALFYE 5118 Query 641 KHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV 700 + NE L + G ++ KPGGT+SGD+TTA++NS +N + Sbjct 5119 LGHL----EPNNHWFLNEMFAFLLDPSFISGHIFNKPGGTTSGDSTTAFSNSFYNYFVHL 5174 Query 701 TANVNALLSTDGNKIADKYVRNLQHRLYEC-------LYRNRDVDTDFVNEFYAYLRKHF 753 L+T+ + + + NL H+ + LY + D + F Sbjct 5175 YIQYLTFLTTEMPP-SYQPLCNLAHQAFSTGNTETYDLYFSMADDLNSTEYF-------- 5225 Query 754 SMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFC 813 + LSDD+ + T + + NF L ++ AK W+ HEFC Sbjct 5226 -LHFLSDDSFIISKPTAFP---IFTPANFSMKLQNVLGCYVDPAKSWSADGEI---HEFC 5278 Query 814 SQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHP 873 S H + + YV PDP+ +L + D +I + V+ + Sbjct 5279 SSHICKINEKYQYV----PDPNNMLAGLICAPEPTPQDK--LIWKLVATCAELAVFHFVN 5332 Query 874 NQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932 + ++F L L + +SV L + E +FY + V Q Sbjct 5333 PTLFNNIF--------HLLQSLHAEFVSEHSVNLL---PPKLLEIDFYTDLIDSEDVEQ 5380 Score = 165 bits (418), Expect = 5e-40, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 76/191 (40%), Gaps = 35/191 (18%) Query 35 FDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIY---NLLK 91 +I N+ VA K K N ++ L D+ HE IY LL Sbjct 4581 INILNNNVASLRKVFKKNTASIPSENGTIMLKDT----------GTAHE--IYVAKQLLA 4628 Query 92 DCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNC 151 V +H R + D ++ R T Y++ DLVYA D K +L+ + Sbjct 4629 KGLPVLQHA----RFNHDGTDYLIRYYTTPYSLGDLVYAYMVGD------FKHMLLALDI 4678 Query 152 CDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQD 211 D+ + ++ Y N E++R L + + + A + +TLDN D Sbjct 4679 TDETCLDPGNYSS----------YYNFKEQLRNKLASVIPNVNKILAAELPLAITLDNID 4728 Query 212 LNGNWYDFGDF 222 LNG YDFGD+ Sbjct 4729 LNGFLYDFGDY 4739 >sp|Q9WJB2|RPOA_PRRSR Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain VR-2332) OX=300559 GN=rep PE=1 SV=2 Length=3960 Score = 271 bits (692), Expect = 4e-74, Method: Composition-based stats. Identities = 83/443 (19%), Positives = 161/443 (36%), Gaps = 70/443 (16%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS- 501 + G + D +Y+L T + L V+ +V KY + G C ++ S Sbjct 2733 TEHGCEDAALKDLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM 2790 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS 561 AG N++ D S + D L A R T+T LK K + RT+ G + Sbjct 2791 AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN 2846 Query 562 ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGW 617 + +R + + + + + +G +KF +++ P L + Sbjct 2847 NFIALAHRAVLSGVTQGFMKKAFNSPIALGKNKF------------KELQTPVLGRCLEA 2894 Query 618 DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 D CDR+ P ++R A+ +L + C+ H + N C +L V G++ K Sbjct 2895 DLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKR 2947 Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG SSGD T+ +N+++++ V + + G+ ++++ Sbjct 2948 GGLSSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK------------ 2994 Query 738 DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA 797 + + K +++ SDD V+ YA + + + L Sbjct 2995 --------FEDMLKVQPLIVYSDDLVL-----YAESPTMPNYHWWVEHLNLMLGFQTDPK 3041 Query 798 KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE 857 K T +T P S + G V P+ RIL A + Sbjct 3042 K----TAITDSP----SFLGCRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA 3089 Query 858 RFVSLAIDAYPLTKHPNQEYADV 880 ++ +D+ ++ + + ++ Sbjct 3090 --AAILMDSCACLEYDPEWFEEL 3110 >sp|A6YQT5|RPOA_PRRSV Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus OX=28344 PE=1 SV=2 Length=3931 Score = 270 bits (691), Expect = 5e-74, Method: Composition-based stats. Identities = 83/443 (19%), Positives = 161/443 (36%), Gaps = 70/443 (16%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS- 501 + G + D +Y+L T + L V+ +V KY + G C ++ S Sbjct 2704 TEHGCEDAALRDLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM 2761 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS 561 AG N++ D S + D L A R T+T LK K + RT+ G + Sbjct 2762 AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN 2817 Query 562 ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGW 617 + +R + + + + + +G +KF +++ P L + Sbjct 2818 NFIALAHRAALSGVTQGFMKKAFNSPIALGKNKF------------KELQAPVLGRCLEA 2865 Query 618 DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 D CDR+ P ++R A+ +L + C+ H + N C +L V G++ K Sbjct 2866 DLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKR 2918 Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG SSGD T+ +N+++++ V + + G+ ++++ Sbjct 2919 GGLSSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK------------ 2965 Query 738 DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA 797 + + K +++ SDD V+ YA + + + L Sbjct 2966 --------FEDMLKVQPLIVYSDDLVL-----YAESPSMPNYHWWVEHLNLMLGFQTDPK 3012 Query 798 KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE 857 K T +T P S + G V P+ RIL A + Sbjct 3013 K----TTITDSP----SFLGCRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA 3060 Query 858 RFVSLAIDAYPLTKHPNQEYADV 880 ++ +D+ ++ + + ++ Sbjct 3061 --AAILMDSCACLEYDPEWFEEL 3081 >sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain HB-1) OX=300563 GN=rep PE=2 SV=3 Length=3961 Score = 268 bits (685), Expect = 3e-73, Method: Composition-based stats. Identities = 81/443 (18%), Positives = 158/443 (36%), Gaps = 70/443 (16%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS- 501 + G + D +Y+L T + L V+ +V KY + G C ++ S Sbjct 2734 TEHGCEDAALRDLSKYDLVTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM 2791 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS 561 AG N++ D S + D L A R T+T LK K + RT+ G + Sbjct 2792 AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN 2847 Query 562 ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL---MGW 617 + +R + + + + + +G +KF +++ P L + Sbjct 2848 NFIALAHRAALSGVTQGFMKKAFNSPIALGKNKF------------KELQTPVLGRCLEA 2895 Query 618 DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 D CDR+ P ++R A+ +L + C+ H + N C +L V G++ K Sbjct 2896 DLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKR 2948 Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG SSGD T+ +N+++++ V + + G+ ++++ Sbjct 2949 GGLSSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK------------ 2995 Query 738 DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA 797 + + K +++ SDD V+ YA + + + L Sbjct 2996 --------FEDMLKVQPLIVYSDDLVL-----YAESPSMPNYHWWVEHLNLMLGFQTDPK 3042 Query 798 KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE 857 K T F + G V P+ RIL A + Sbjct 3043 KTAITDSPT-----FLG---CRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA 3090 Query 858 RFVSLAIDAYPLTKHPNQEYADV 880 ++ +D+ ++ + + ++ Sbjct 3091 --AAILMDSCACLEYDPEWFEEL 3111 >sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain 16244B) OX=300561 GN=rep PE=1 SV=3 Length=3961 Score = 268 bits (685), Expect = 3e-73, Method: Composition-based stats. Identities = 83/440 (19%), Positives = 160/440 (36%), Gaps = 64/440 (15%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS- 501 + G + D +Y+L T + L V+ +V KY + G C ++ S Sbjct 2734 TEHGCEDAALKDLSKYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSM 2791 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS 561 AG N++ D S + D L A R T+T LK K + RT+ G + Sbjct 2792 AGINGNRFPTK----DIQSVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTN 2847 Query 562 ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYP 620 + +R + + + + + +G +KF K + + V + D Sbjct 2848 NFIALAHRAALSGVTQGFMKKAFNSPIALGKNKF--------KELQTSVLG-RCLEADLA 2898 Query 621 KCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGT 680 CDR+ P ++R A+ +L + C+ H + N C +L V G++ K GG Sbjct 2899 SCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL---VTQSGAV-TKRGGL 2951 Query 681 SSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTD 740 SSGD T+ +N+++++ V + + G+ ++++ Sbjct 2952 SSGDPITSVSNTIYSLVIYAQHMVLSYFKS-GHPHGLLFLQDQLK--------------- 2995 Query 741 FVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW 800 + + K +++ SDD V+ YA + + + L K Sbjct 2996 -----FEDMLKVQPLIVYSDDLVL-----YAESPTMPNYHWWVEHLNLMLGFQTDPKK-- 3043 Query 801 TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFV 860 T +T P S + G V P+ RIL A + Sbjct 3044 --TAITDSP----SFLGCRIINGRQLV----PNRDRILAALAYHMKASNVSEYYASA--A 3091 Query 861 SLAIDAYPLTKHPNQEYADV 880 ++ +D+ ++ + + ++ Sbjct 3092 AILMDSCACLEYDPEWFEEL 3111 >sp|Q68772|RPOA_SHFV Replicase polyprotein 1ab OS=Simian hemorrhagic fever virus OX=38143 GN=rep PE=2 SV=4 Length=3595 Score = 256 bits (654), Expect = 2e-69, Method: Composition-based stats. Identities = 90/455 (20%), Positives = 161/455 (35%), Gaps = 71/455 (16%) Query 441 FFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCIN-ANQVIVNNLD 499 ++ Q G A + D ++NL T I L V+ +V Y G V + D Sbjct 2333 YYTQHGCEAAALQDLKKFNLSTQGFI--LPEVLNIVRNYLLGTIGYRPAIYKPSTVPSND 2390 Query 500 KSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAG 559 AG + L + D D L V T+T + LK +K + RT+ G Sbjct 2391 SHAGINGLSFSTKTL----QALPDIDELCEKAIAEVWQTVTPVTLKKQFCSKAKTRTILG 2446 Query 560 VSICSTMTNRQFHQKLLKSIA-ATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD 618 + +++ R + + A + + + +G SKF +V+ + D Sbjct 2447 TNAMASLALRALLSGVTQGFQLAGKNSPICLGKSKF--------DPCTFEVKG-RCLETD 2497 Query 619 YPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPG 678 CDR+ P ++R A+ +L C+ + N C ++++ S K G Sbjct 2498 LASCDRSTPAIVRHFATKLLF---EMACAERALPLYVVNCCH----DLIVTQTSAATKRG 2550 Query 679 GTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVD 738 G SSGD T+ AN+++++ V V LL +G+ ++ K++ + D Sbjct 2551 GLSSGDPVTSIANTIYSLVLYVQHMVLTLLE-NGHPLSLKFLSG----------KLNFQD 2599 Query 739 TDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS---VLYYQNNVFMS 795 + F Y SDD ++ S + NF+ L + Sbjct 2600 LYKLQAFIVY----------SDDLILLNESD--------DLPNFERWVPHLELALGFKVD 2641 Query 796 EAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLM 855 K ++ E+ +H LV P R+L A + + + Sbjct 2642 PKKTVITSNPGFLGCEY--RHGWLV-----------PQKQRVLAALAYHVNAKDVHTYYI 2688 Query 856 IERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRK 890 ++ DA L+ + D+ RK Sbjct 2689 NA--TAILNDASALSAFEPDWFDDLVIGLADCARK 2721 >sp|Q04561|RPOA_PRRSL Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (strain Lelystad) OX=11049 GN=rep PE=1 SV=3 Length=3855 Score = 231 bits (590), Expect = 3e-61, Method: Composition-based stats. Identities = 81/443 (18%), Positives = 159/443 (36%), Gaps = 64/443 (14%) Query 440 FFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLD 499 F + G + + D +Y+L T + L V+ +V ++ + G Sbjct 2624 FMCTKHGTSKAAAEDLQKYDLSTQGFV--LPGVLRLVRRFIFGHIGKAPPLFLPSTYPAK 2681 Query 500 KS-AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVA 558 S AG ++ D S + D + A + T+T LK +K + RT+ Sbjct 2682 NSMAGINGQRFPTK----DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTIL 2737 Query 559 GVSICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGW 617 G + + +R + ++ + + + +G +KF K ++ V + Sbjct 2738 GTNNFIALAHRSALSGVTQAFMKKAWKSPIALGKNKF--------KELHCTVAG-RCLEA 2788 Query 618 DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 D CDR+ P ++R + +L + + + N C ++V + K Sbjct 2789 DLASCDRSTPAIVRWFVANLL---YELAGCEEYLPSYVLNCCH----DLVATQDGAFTKR 2841 Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG SSGD T+ +N+V+++ V + L G++I K++ Sbjct 2842 GGLSSGDPVTSVSNTVYSLVIYAQHMVLSALKM-GHEIGLKFLEEQLK------------ 2888 Query 738 DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA 797 + L + M++ SDD V+ YA + + + L Sbjct 2889 --------FEDLLEIQPMLVYSDDLVL-----YAERPTFPNYHWWVEHLDLMLGFRTDPK 2935 Query 798 KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE 857 K T +T P S ++ G V P+ RIL A + + + + Sbjct 2936 K----TVITDKP----SFLGCRIEAGRQLV----PNRDRILAALAY--HMKAQNASEYYA 2981 Query 858 RFVSLAIDAYPLTKHPNQEYADV 880 ++ +D+ H + Y D+ Sbjct 2982 SAAAILMDSCACIDHDPEWYEDL 3004 >sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive and respiratory syndrome virus (isolate Pig/United States/SD 01-08/2001) OX=857306 PE=1 SV=2 Length=3838 Score = 231 bits (590), Expect = 3e-61, Method: Composition-based stats. Identities = 81/443 (18%), Positives = 159/443 (36%), Gaps = 64/443 (14%) Query 440 FFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLD 499 F + G + + D +Y+L T + L V+ +V ++ + G Sbjct 2607 FMCTKHGTSKAAAEDLQKYDLSTQGFV--LPGVLRLVRRFIFGHIGKAPPLFLPSTYPAK 2664 Query 500 KS-AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVA 558 S AG ++ D S + D + A + T+T LK +K + RT+ Sbjct 2665 NSMAGINGQRFPTK----DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTIL 2720 Query 559 GVSICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGW 617 G + + +R + ++ + + + +G +KF K ++ V + Sbjct 2721 GTNNFIALAHRSALSGVTQAFMKKAWKSPIALGKNKF--------KELHCTVAG-RCLEA 2771 Query 618 DYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP 677 D CDR+ P ++R + +L + + + N C ++V + K Sbjct 2772 DLASCDRSTPAIVRWFVANLL---YELAGCEEYLPSYVLNCCH----DLVATQDGAFTKR 2824 Query 678 GGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDV 737 GG SSGD T+ +N+V+++ V + L G++I K++ Sbjct 2825 GGLSSGDPVTSVSNTVYSLIIYAQHMVLSALKM-GHEIGLKFLEEQLK------------ 2871 Query 738 DTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEA 797 + L + M++ SDD V+ YA + + + L Sbjct 2872 --------FEDLLEIQPMLVYSDDLVL-----YAERPTFPNYHWWVEHLDLMLGFRTDPK 2918 Query 798 KCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIE 857 K T +T P S ++ G V P+ RIL A + + + + Sbjct 2919 K----TVITDKP----SFLGCRIEAGRQLV----PNRDRILAALAY--HMKAQNASEYYA 2964 Query 858 RFVSLAIDAYPLTKHPNQEYADV 880 ++ +D+ H + Y D+ Sbjct 2965 SAAAILMDSCACIDHDPEWYEDL 2987 >sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab OS=Lactate dehydrogenase elevating virus (strain Plagemann) OX=300016 GN=rep PE=1 SV=2 Length=3616 Score = 208 bits (529), Expect = 1e-53, Method: Composition-based stats. Identities = 66/316 (21%), Positives = 118/316 (37%), Gaps = 28/316 (9%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS- 501 + G A+ ++ D +++L + L V+ +V +Y G S Sbjct 2434 TKHGCASAAEKDLQKFDLSRQGFV--LPGVLYMVRRYLSRLIGVRRRLFMPSTYPAKNSM 2491 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS 561 AG ++ L S+ D DAL T+T LK +K++ RT+ G + Sbjct 2492 AGINGGRFPLTWL----QSHPDIDALCKRACEEHWQTVTPCTLKKQYCSKSKTRTILGTN 2547 Query 562 ICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYP 620 + R + + + G + +G +KF + + D Sbjct 2548 NFVALGLRSALSGVTQGFMRKGIGTPICLGKNKFTPLPVRI---------GGRCLEADLA 2598 Query 621 KCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGT 680 CDR+ P ++R + +L + + N C V+S M C + K GG Sbjct 2599 SCDRSTPAIIRWFTTNLLF---ELAGAEEWIPSYVLNCCHDVVSTMSGC----FDKRGGL 2651 Query 681 SSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL--QHRLYE-CLYRNRDV 737 SSGD T+ +N+V+++ V + G+KI ++++ +L+E Sbjct 2652 SSGDPVTSISNTVYSLIIYAQHMVLSAFRC-GHKIGGLFLQDSLEMEQLFELQPLLVYSD 2710 Query 738 DTDFVNEFYAYLRKHF 753 D F NE HF Sbjct 2711 DVVFYNESDELPNYHF 2726 >sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrogenase elevating virus (strain C) OX=300015 GN=rep PE=3 SV=2 Length=3637 Score = 204 bits (519), Expect = 2e-52, Method: Composition-based stats. Identities = 64/336 (19%), Positives = 126/336 (38%), Gaps = 30/336 (9%) Query 450 ISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKS-AGFPFNK 508 +++ D +++L + L V+ +V +Y G S AG N+ Sbjct 2462 LAECDLQKFDLSRQGFV--LPGVLYMVRRYLCRLVGIRRRLFLPSTYPAKNSMAGINGNR 2519 Query 509 WGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTN 568 + + S+ D DAL + T+T LK +K + RT+ G + + Sbjct 2520 FPT----HVVQSHPDIDALCERACKEHWQTVTPCTLKKQYCSKAKTRTILGTNNFVALGL 2575 Query 569 RQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMP 627 R + + + G+ + +G +KF + + + D CDR+ P Sbjct 2576 RSALSGVTQGFMRKGIGSPICLGKNKFTPLPTKV---------SGRCLEADLASCDRSTP 2626 Query 628 NMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATT 687 ++R + +L + N C +S M C + K GG SSGD T Sbjct 2627 AIIRWFTTNLLF---ELAGPEEWIPSYVLNCCHDAVSTMSGC----FDKRGGLSSGDPVT 2679 Query 688 AYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL--QHRLYE-CLYRNRDVDTDFVNE 744 + +N+V+++ V + G+K+ ++R+ +L+E D +E Sbjct 2680 SVSNTVYSLVIYAQHMVLSAFRC-GHKVGGLFLRDSLEMEQLFELQPLLVYSDDVVLYDE 2738 Query 745 FYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIK 780 HF + L D ++ F + + + + + Sbjct 2739 SSELPNYHFFVDHL--DLMLGFKTDRSKTVITSDPQ 2772 >sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteritis virus (strain Bucyrus) OX=299386 GN=rep PE=1 SV=3 Length=3175 Score = 173 bits (439), Expect = 1e-42, Method: Composition-based stats. Identities = 68/350 (19%), Positives = 123/350 (35%), Gaps = 54/350 (15%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCIN-ANQVIVNNLDKSAGFPFNKWGKA 512 D +YNL T + L V +V Y G V + + AG ++ Sbjct 1971 DLEKYNLSTQGFV--LPSVFSMVRAYLKEEIGDAPPLYLPSTVPSKNSQAGINGAEFPTK 2028 Query 513 RLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFH 572 L SY D + + + ++ + T T K +K + R++ G + + R Sbjct 2029 SL----QSYCLIDDMVSQSMKSNLQTATMATCKRQYCSKYKIRSILGTNNYIGLGLRACL 2084 Query 573 QKLLKSIAAT--RGATVVIGTSKFYGGWHNMLKTVYSDVENPH--LMGWDYPKCDRAMPN 628 + + G+ + +G SKF + P + D CDR+ P Sbjct 2085 SGVTAAFQKAGKDGSPIYLGKSKF------------DPIPAPDKYCLETDLESCDRSTPA 2132 Query 629 MLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTA 688 ++R A+ ++ + N C ++V+ G + K GG SSGD T+ Sbjct 2133 LVRWFATNLIF---ELAGQPELVHSYVLNCCH----DLVVAGSVAFTKRGGLSSGDPITS 2185 Query 689 YANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAY 748 +N+++++ + L +IA+KY+ R+ Sbjct 2186 ISNTIYSLVLYTQHMLLCGLEGYFPEIAEKYLDG------SLELRDMF------------ 2227 Query 749 LRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAK 798 K+ + I SDD V+ T +Q AS + L + K Sbjct 2228 --KYVRVYIYSDDVVL----TTPNQHYAASFDRWVPHLQALLGFKVDPKK 2271 >sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic virus (strain California) OX=117128 PE=1 SV=2 Length=3080 Score = 58.1 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 58/295 (20%), Positives = 115/295 (39%), Gaps = 48/295 (16%) Query 454 DYYRYNLP---TMCDIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN 507 D+++YN P D + L V+ V + F+ + I + I N+L+ A Sbjct 2356 DFFKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDPEEIYNSLNMKAAIGAQ 2415 Query 508 KWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA--- 554 GK + Y++ + D++ L + + + + L+ + K R Sbjct 2416 YRGKKKEYFEGLDDFDRERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVRANKTRTFTA 2475 Query 555 ---RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 T+ G +C N +F++K LK +G +KFYGGW +++++ Sbjct 2476 APIDTLLGAKVCVDDFNNEFYRKNLK-------CPWTVGMTKFYGGWDKLMRSLPDGWLY 2528 Query 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-SEMVMC- 669 H G + P +L A L++ + + + E + L +E+V Sbjct 2529 CHADGSQFDS--SLTPALLN--AVLIIRSFYM-------EDWWVGQEMLENLYAEIVYTP 2577 Query 670 ----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720 G+++ K G +SG +T N++ + A + + +I +K V Sbjct 2578 ILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVISIYYACMK--FGWNCEEIENKLV 2630 >sp|Q89330|POLG_ZYMVR Genome polyprotein OS=Zucchini yellow mosaic virus (strain Reunion Island) OX=117129 PE=3 SV=1 Length=3083 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 52/281 (19%), Positives = 106/281 (38%), Gaps = 48/281 (17%) Query 454 DYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 D+++YN P + + + V+ ++ F+ + I + I ++L+ A Sbjct 2359 DFFKYNKPVIVNQLDHDKFLEAVDGVIRMM-CDFEFNECRFITDPEEIYSSLNMKAAIGA 2417 Query 507 NKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA-- 554 GK + Y++ + D + L + + + + L+ + K R Sbjct 2418 QYRGKKKEYFEGLDNFDMERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVQANKTRTFT 2477 Query 555 ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 T+ G +C N +F+ K LK +G SKFYGGW +++ + Sbjct 2478 AAPIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMSKFYGGWDKLMRALPDGWL 2530 Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-SEMVMC 669 H G + P +L A L++ + + + E + L +E+V Sbjct 2531 YCHADGSQFDS--SLTPALLN--AVLIIRSFYM-------EDWWVGQEMLENLYAEIVYT 2579 Query 670 -----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN 705 G+++ K G +SG +T N++ + A + Sbjct 2580 PILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVISIYYACIK 2620 >sp|O36979|POLG_ZYMVS Genome polyprotein OS=Zucchini yellow mosaic virus (strain Singapore) OX=117130 PE=3 SV=2 Length=3083 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 106/278 (38%), Gaps = 48/278 (17%) Query 454 DYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 D+++YN P + + + V+ ++ F+ + I + I ++L+ A Sbjct 2359 DFFKYNKPVVVNQLDHDKFLGAVNGVIRMM-CDFEFNECRFITDPEEIYDSLNMKAAIGA 2417 Query 507 NKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA-- 554 GK + Y++ + D++ L + + + + L+ + K R Sbjct 2418 QYRGKKKEYFEGLDNFDRERLLFQSCERLFNGHKGLWNGSLKAELRPLEKVQANKTRTFT 2477 Query 555 ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 T+ G +C N +F+ K LK +G +KFYGGW +++ + Sbjct 2478 AAPIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMTKFYGGWDKLMRELPDGWL 2530 Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-SEMVMC 669 H G + P +L A L++ + + + E + L +E+V Sbjct 2531 YCHADGSQFDS--SLTPALLN--AVLIIRSFYM-------EDWWVGQEMLENLYAEIVYT 2579 Query 670 -----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA 702 G+++ K G +SG +T N++ + A Sbjct 2580 PILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVISIYYA 2617 >sp|P18478|POLG_WMV2U Genome polyprotein (Fragment) OS=Watermelon mosaic virus II (isolate USA) OX=148360 PE=1 SV=3 Length=1017 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 49/278 (18%), Positives = 105/278 (38%), Gaps = 48/278 (17%) Query 454 DYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 D+++YN P + + + V+ ++ + + +++ +L+ A Sbjct 291 DFFKYNKPVVLNEVDFNAFEKAVEGVITMMVDFEFAECLFVTDPDEIY-GSLNMKAAVGA 349 Query 507 NKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK---YAISAKNRA-- 554 GK + Y+ M D++ L + ++ + + L+ + K R Sbjct 350 QYKGKKQDYFSGMDSFDKERLLYLSCERLFNGEKGIWNGSLKAELRPIEKVQANKTRTFT 409 Query 555 ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 T+ G +C N QF+ LK +G +KFYGGW +++++ Sbjct 410 AAPLDTLLGAKVCVDDFNNQFYSFNLK-------CPWTVGMTKFYGGWDKLMRSLPDGWT 462 Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL-SEMVMC 669 H G + P +L + S+ CC + + + E + L +E+V Sbjct 463 YCHADGSQFDS--SLTPLLLNAVLSI-------RCCFMED--WWVGREMLENLYAEIVYT 511 Query 670 -----GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA 702 G+++ K G +SG +T N++ + + Sbjct 512 PILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVIAMYYS 549 >sp|Q01901|POLG_PRSVH Genome polyprotein OS=Papaya ringspot virus (strain P / mutant HA) OX=31731 PE=3 SV=2 Length=3344 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 131/369 (36%), Gaps = 56/369 (15%) Query 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KR 533 +C + I ++VI+ L+ A GK R Y++ + E + AL + + Sbjct 2624 ECPELEYITDSEVIIQALNMDAAVGALYTGKKRKYFEGSTVEHRQALVRKSCERLYEGRM 2683 Query 534 NVIPTITQMNLK---YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRG 584 V + L+ ++ K R+ T+ G +C N F+ K ++ Sbjct 2684 GVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNWFYSKNME------- 2736 Query 585 ATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRA------MPNMLRIMASLVL 638 +G +KFY GW LK + D GW Y D + P +L + S+ L Sbjct 2737 CPWTVGMTKFYKGWDEFLK-KFPD-------GWVYCDADGSQFDSSLTPYLLNAVLSIRL 2788 Query 639 ARKHTTCCSLSHRFYRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNIC 697 L N ++ ++ G++ K G +SG +T N++ + Sbjct 2789 WAMED----WDIGEQMLKNLYGEITYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVLI 2844 Query 698 QAVTANVNALLSTDGNK------IADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRK 751 A A T + I + H +E + + + Y + ++ Sbjct 2845 TMYYALRKAGYDTKTQEDMCVFYINGDDLCIAIHPDHEHVLDSFSSSFAELGLKYDFAQR 2904 Query 752 HF---SMMILSDDAVV---CFNSTYASQGLVASIKNFKSVL--YYQNNVFMSEAKCWTET 803 H ++ +S ++ + + +VA ++ KS L + + + + W Sbjct 2905 HRNKQNLWFMSHRGILIDDIYIPKLEPERIVAILEWDKSKLPEHRLEAITAAMIESWGYG 2964 Query 804 DLTKGPHEF 812 DLT F Sbjct 2965 DLTHQIRRF 2973 >sp|O56075|POLG_PEMVM Genome polyprotein OS=Peanut mottle virus (strain M) OX=103926 PE=3 SV=1 Length=3099 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 38/217 (18%), Positives = 82/217 (38%), Gaps = 18/217 (8%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQ--------DALFAYTKRNVIPTI 539 + + I+++L+ A GK + Y++S+S ++ + LF Y + V Sbjct 2415 VTDEEAILDSLNMKAAVGALYKGKKKEYFESLSEPEKHHIVQASCERLF-YGEMGVWNGS 2473 Query 540 TQMNLK-YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAA-TRGATVVIGTSKFYGG 597 + L+ A N+ RT I + + + + +G +KFYGG Sbjct 2474 LKAELRPKEKVALNKTRTFTAAPIDTLLGGKCCVDDFNNRFYSLNIEGPWTVGMTKFYGG 2533 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRI-MASLVLARKHTTCCSLSHRFYRLA 656 W +++ + H G + P +L +A ++ + R + Sbjct 2534 WDKLMRKLPDGWRYCHADGSQFDS--SLTPFLLNAVLAVRLMFMEDWWVGEQMLRNFY-- 2589 Query 657 NECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSV 693 + + ++ G++ K G +SG +T N++ Sbjct 2590 --TEIIYTPILTPDGTIVKKFKGNNSGQPSTVVDNTL 2624 >sp|A0AUJ5|POLG_BVY3 Genome polyprotein OS=Blackberry virus Y (isolate Blackberry plant/USA:Arkansas/C3ARK/2005) OX=686949 PE=3 SV=1 Length=3491 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 65/389 (17%), Positives = 126/389 (32%), Gaps = 41/389 (11%) Query 401 LTNNVAFQTVKPGNFN---------KDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAIS 451 L N+ +Q P FN + F + G + L H + + N Sbjct 2617 LPVNIKYQCDMPTFFNTRHTYEGESQPFMAYLRECGDAETFFRPLLSH-YIPSNLNGDAF 2675 Query 452 DYDYYRYNLPT----MCDIRQLLFVVEVVDKYFDC-YDGGCINAN---QVIVNNLDKSAG 503 D+++Y P + + V+ ++ Y+ I + I ++L+K A Sbjct 2676 KKDFFKYGKPVPVGLVHGPSFKIASDRVIKRFERVGYERHSIPFEFDAEAIRDDLNKHAA 2735 Query 504 FPFNKWGKARLYYDSMSYEDQ-DALFAYTKR--NVIPTITQMNLKYAISAK-----NRAR 555 GK + D +S E D A R N + + +LK + +K N+ R Sbjct 2736 MGAQYVGKKEQHLDGISEEQFCDEFVASCCRLANNCDGVWKGSLKAELRSKEKVQENKTR 2795 Query 556 TVAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHL 614 + + K A +G +K GWH +LK++ E Sbjct 2796 VFTSAPYDVLLGGKACVMHFNKKFYANNTKGPWTVGINKLGLGWHRLLKSLP---EGFVY 2852 Query 615 MGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSL 673 D + D + P ++ + + + + ++S M GS+ Sbjct 2853 GTGDGSQFDSSLTPLLINEVCRIRMYFMQDDELGQAMLRGLYRQIIWTLIS---MPDGSV 2909 Query 674 YVKPGGTSSGDATTAYANSVFNIC-QAVTANVNALLSTDGNKIADKYVRNLQHRLYECLY 732 K G SG +T N++ + + + + I Y + L Sbjct 2910 VRKAKGNPSGQPSTVDDNTIMVMLAVEYVFAYLGITQEEMDTIFKYYANG------DDLI 2963 Query 733 RNRDVDTDFVNEFYAYLRKHFSMMILSDD 761 D + + + +L H + + +D Sbjct 2964 FAIHPDRESILNEFTHLFAHLGLNYIFED 2992 >sp|Q9JH69|NS1AB_TASV1 Non-structural polyprotein 1AB OS=Turkey astrovirus 1 OX=364370 GN=ORF1 PE=3 SV=3 Length=1611 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 101/264 (38%), Gaps = 22/264 (8%) Query 495 VNNLDKSAGFP-FNKWGKARLYYDSMSYEDQDALFAYTKRNV---IPTITQMNLKYAISA 550 NLD + G+P F + R Y + +++ ++ R + LK A Sbjct 1232 EKNLDSTPGYPKFKVFSTEREYLSTCGWDEYKTVWQVGPREKPLWWCFLKTEVLKLAKIE 1291 Query 551 KNRARTVAGVSICSTMTNRQF--HQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSD 608 ++ R + T F HQ L + T +G S F+GG H +Y Sbjct 1292 QDDIRMILCTDPVFTRIGAAFEQHQNSLMKL-ETENHHAQVGWSPFFGGIHRRATRLYG- 1349 Query 609 VENPHLMGWDYPKCDRAMP-NMLRIMASL---VLARKHTTCCSLSHRFYRLANECAQVLS 664 E+ + + D+ + D +P + R + + +L K+ T + + + N +V Sbjct 1350 -EHRYYVELDWTRFDGTIPPELFRRIKLMRFFLLDPKYKTPENRDRYNWYVENLIDKV-- 1406 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 +++ G + GG SG +T N+ N+ V + L + N++ + ++ Sbjct 1407 -VLLPTGEVCKIYGGNPSGQFSTTVDNNFVNVWLTVF-ELAYLFYKEHNRLP--TICEIK 1462 Query 725 HRLYECLY---RNRDVDTDFVNEF 745 Y R VD F+N + Sbjct 1463 KHTDWICYGDDRLLAVDKRFINSY 1486 >sp|P17766|POLG_PPVNA Genome polyprotein OS=Plum pox potyvirus (isolate NAT) OX=12213 PE=3 SV=1 Length=3125 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 54/305 (18%), Positives = 107/305 (35%), Gaps = 38/305 (12%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQD--------ALFAYTKRNVIPTITQMNLK 545 I + L+ A GK R Y++++S +D++ LF K+ V +LK Sbjct 2410 IFSALNMKAAVGALYSGKKRDYFENVSDQDKESFVRASCKRLF-MGKKGVW----NGSLK 2464 Query 546 YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATR------GATVVIGTSKFYGGWH 599 + K + S + + K+ + +G +KF GGW Sbjct 2465 AELRPKEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLHCPWSVGMTKFRGGWD 2524 Query 600 NMLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 +LK + E D + D ++ P ++ + ++ LA L+N Sbjct 2525 KLLKALP---EGWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEE----WDIGEQMLSNL 2577 Query 659 CAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIAD 717 +++ + G++ K G +SG +T N++ I + + D + Sbjct 2578 YTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGHHPDTHDCIC 2637 Query 718 KYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRK---HFSMMILSDDAVVCFNS 768 +Y N H YE +Y + Y + K + +S V+ ++ Sbjct 2638 RYFVNGDDLVLAVHPAYESIYDELQEHFSQLGLNYTFTTKTENKEELWFMSHKGVL-YDD 2696 Query 769 TYASQ 773 Y + Sbjct 2697 MYIPK 2701 >sp|Q01681|POLG_PPVEA Genome polyprotein (Fragment) OS=Plum pox potyvirus (strain El amar) OX=31738 PE=2 SV=1 Length=1518 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 100/298 (34%), Gaps = 35/298 (12%) Query 492 QVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNL 544 + I + L+ A GK R Y+ S +++ K+ V +L Sbjct 784 EEIFSALNMKAAVGALYSGKKRDYFKDTSELEKEEFVRASCKRLFMGKKGVW----NGSL 839 Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATR------GATVVIGTSKFYGGW 598 K + K + S + + K+ + +G +KF GGW Sbjct 840 KAELRPKEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLHCPWSVGMTKFRGGW 899 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLAN 657 +L+ + + D + D ++ P ++ + ++ LA L+N Sbjct 900 DKLLRALP---DGWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEE----WDIGEQMLSN 952 Query 658 ECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIA 716 +++ + G++ K G +SG +T N++ I + + D ++ Sbjct 953 LYTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHECI 1012 Query 717 DKYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRK---HFSMMILSDDAVVC 765 +Y N H YE +Y + Y + K + +S ++C Sbjct 1013 CRYFVNGDDLVLAVHPAYESIYDELQHHFSQLGLNYTFTTKTENKEDLWFMSHKGIMC 1070 >sp|P13529|POLG_PPVD Genome polyprotein OS=Plum pox potyvirus (strain D) OX=12212 PE=1 SV=2 Length=3141 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 53/305 (17%), Positives = 106/305 (35%), Gaps = 38/305 (12%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQD--------ALFAYTKRNVIPTITQMNLK 545 I + L+ A GK R Y+ ++S +D++ LF K+ V +LK Sbjct 2411 IFSALNMKAAVGALYSGKKRDYFKNVSDQDKESFVRASCKRLF-MGKKGVW----NGSLK 2465 Query 546 YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATR------GATVVIGTSKFYGGWH 599 + K + S + + K+ + +G +KF GGW Sbjct 2466 AELRPKEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLHCPWSVGMTKFRGGWD 2525 Query 600 NMLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 +L+ + E D + D ++ P ++ + ++ LA L+N Sbjct 2526 KLLRALP---EGWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEE----WDIGEQMLSNL 2578 Query 659 CAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIAD 717 +++ + G++ K G +SG +T N++ I + + D + Sbjct 2579 YTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHDCIC 2638 Query 718 KYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRK---HFSMMILSDDAVVCFNS 768 +Y N H YE +Y + Y + K + +S V+ ++ Sbjct 2639 RYFVNGDDLVLAVHPAYESIYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVL-YDD 2697 Query 769 TYASQ 773 Y + Sbjct 2698 MYIPK 2702 >sp|P17765|POLG_BYMV Genome polyprotein OS=Bean yellow mosaic virus OX=12197 PE=3 SV=2 Length=3056 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 90/268 (34%), Gaps = 26/268 (10%) Query 454 DYYRYNLP---TMCDIRQLLFVVEVVDKYFDCYD-GGC--INANQVIVNNLDKSAGFPFN 507 D +Y P + D R E V + C + I++ L+ A Sbjct 2337 DLMKYATPIEVGLVDTRCFERSFEKVQNMLELKGFSKCNYVTYGPDILSALNMKAAMGAL 2396 Query 508 KWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLKYAISA-KNRARTVAG 559 GK + ++ +S E D + + + V + L+ N+ R+ Sbjct 2397 YSGKKKDHFSEISEEKFDNILQASCERLYSGRMGVWNGSLKAELRPQEKVLANKTRSFTA 2456 Query 560 VSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD 618 I + + + + +G +KFYGGW +L ++ GW Sbjct 2457 APIDTLLAGKVCVDDFNNKFYSLHLKIPSTVGITKFYGGWDRLLDSLPD--------GWV 2508 Query 619 YPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC-GGSLYV 675 Y D + ++ + + VL + L N +++ ++ G++ Sbjct 2509 YCDADGSQFDSSLTPYLLNAVLEMRLRLMEEWDLGEQMLKNLYTEIVYTPILTPDGTIVK 2568 Query 676 KPGGTSSGDATTAYANSVFNICQAVTAN 703 K G +SG +T N++ I A Sbjct 2569 KFKGNNSGQPSTVVDNTLMVIMAVYYAA 2596 >sp|P17767|POLG_PPVRA Genome polyprotein OS=Plum pox potyvirus (strain Rankovic) OX=12214 PE=2 SV=2 Length=3140 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 53/305 (17%), Positives = 106/305 (35%), Gaps = 38/305 (12%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQD--------ALFAYTKRNVIPTITQMNLK 545 I + L+ A GK R Y+ ++S +D++ LF K+ V +LK Sbjct 2410 IFSALNMKAAVGALYSGKKRDYFKNVSDQDKESFVRASCKRLF-MGKKGVW----NGSLK 2464 Query 546 YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATR------GATVVIGTSKFYGGWH 599 + K + S + + K+ + +G +KF GGW Sbjct 2465 AELRPKEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLHCPWSVGMTKFRGGWD 2524 Query 600 NMLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANE 658 +L+ + E D + D ++ P ++ + ++ LA L+N Sbjct 2525 KLLRALP---EGWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEE----WDIGEQMLSNL 2577 Query 659 CAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIAD 717 +++ + G++ K G +SG +T N++ I + + D + Sbjct 2578 YTEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHDCIC 2637 Query 718 KYVRN------LQHRLYECLYRNRDVDTDFVNEFYAYLRK---HFSMMILSDDAVVCFNS 768 +Y N H YE +Y + Y + K + +S V+ ++ Sbjct 2638 RYFVNGDDLVLAVHPAYESIYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVL-YDD 2696 Query 769 TYASQ 773 Y + Sbjct 2697 MYIPK 2701 >sp|P09814|POLG_TVMV Genome polyprotein OS=Tobacco vein mottling virus OX=12228 PE=1 SV=2 Length=3023 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 49/249 (20%), Positives = 89/249 (36%), Gaps = 34/249 (14%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTIT 540 + Q I N L+ A GK + Y++ +S + L + K V Sbjct 2354 VTDEQTIKNALNMDAAVGALYSGKKKQYFEDLSDDAVANLVQKSCLRLFKNKLGVWNGSL 2413 Query 541 QMNLK---YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGT 591 + L+ I K R T+ G +C N F+ K ++ +G Sbjct 2414 KAELRPFEKLIENKTRTFTAAPIETLLGGKVCVDDFNNHFYSKHIQ-------CPWSVGM 2466 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSH 650 +KFYGGW+ +L + + D + D ++ P ++ + L L+ Sbjct 2467 TKFYGGWNELLGKLP---DGWVYCDADGSQFDSSLSPYLINAVLRLRLSSMEE----WDV 2519 Query 651 RFYRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS 709 L N +++ + G++ K G +SG +T N++ + A + L Sbjct 2520 GQKMLQNLYTEIVYTPISTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAMYYA--LSKLG 2577 Query 710 TDGNKIADK 718 D N D Sbjct 2578 VDINSQEDV 2586 >sp|Q84934|POLG_PPVSK Genome polyprotein OS=Plum pox potyvirus (strain SK 68) OX=103927 PE=3 SV=1 Length=3140 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 97/281 (35%), Gaps = 34/281 (12%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLKY 546 I + L+ A GK R Y+ + S +D++ K+ V +LK Sbjct 2410 IFSALNMKAAVGALYSGKKRDYFKNASEQDKEDFIKASCKRLFMGKKGVW----NGSLKA 2465 Query 547 AISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATR------GATVVIGTSKFYGGWHN 600 + K + S + + K+ + +G +KF GGW Sbjct 2466 ELRPKEKVEANKTRSFTAAPIDTLLGGKVCVDDFNNQFYSLNLHCPWSVGMTKFRGGWDK 2525 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANEC 659 +L+ + + D + D ++ P ++ + ++ LA L+N Sbjct 2526 LLRALP---DGWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEE----WDIGEQMLSNLY 2578 Query 660 AQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK 718 +++ + G++ K G +SG +T N++ I A +LL + + Sbjct 2579 TEIVYTPIATPDGTIVKKFKGNNSGQPSTVVDNTLMVIL----AMTYSLLKLGYHPDTHE 2634 Query 719 YVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILS 759 + R + Y L++HFS + L+ Sbjct 2635 CIC----RYFVNGDDLVLAVHPAYESMYDELQEHFSQLGLN 2671 >sp|P20234|POLG_OMV Genome polyprotein (Fragment) OS=Ornithogalum mosaic virus OX=12204 PE=3 SV=1 Length=1136 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 92/266 (35%), Gaps = 42/266 (16%) Query 454 DYYRYNLPTMC----DIRQLLFVVEVVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFN 507 D +Y+ P + I+ V+ + D C + + + NL+ A Sbjct 437 DIMKYSKPIVLGEVDFIKFEEGYNNVLRMFHDIGFEKCEYVTDSMEVYKNLNLKAAVGAM 496 Query 508 KWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNL----KYAISAKNRA-- 554 GK + Y++ MS ++ L + K V + L K K R Sbjct 497 YTGKKQQYFEGMSEDEIHQLVIASCFRLWSGKFGVWNGSLKAELRPLEKVQAC-KTRTFT 555 Query 555 ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 T+ G +C N QF+ K L A +G K+Y GW + + Sbjct 556 AAPLDTLLGAKVCVDDFNAQFYDKHLT-------APWTVGICKYYKGWDTFMNKLPE--- 605 Query 611 NPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 GW Y D + ++ + + VL + L+N +++ + Sbjct 606 -----GWLYCDADGSQFDSSLTPFLINSVLRLRLEFMEDWDIGARMLSNLYTEIIYTPIA 660 Query 669 C-GGSLYVKPGGTSSGDATTAYANSV 693 G++ K G +SG +T N++ Sbjct 661 TPDGTVVKKFRGNNSGQPSTVVDNTL 686 >sp|Q65399|POLG_BCMNN Genome polyprotein OS=Bean common mosaic necrosis virus (strain NL-3) OX=500578 PE=2 SV=1 Length=3066 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 51/275 (19%), Positives = 99/275 (36%), Gaps = 36/275 (13%) Query 454 DYYRYNLPTMCDIRQLLFVVEVVD--KYFDCYDG--GCINANQV--IVNNLDKSAGFPFN 507 D+++YN P M + + V+ K G C+ I ++L+ A Sbjct 2360 DFFKYNKPVMLNEVNFEAFEKAVEGVKIMMIEFGFNECVYVTDPDDIYDSLNMKAAVGAQ 2419 Query 508 KWGKARLYYDSMSYEDQDAL----FA---YTKRNVIPTITQMNLK---YAISAKNRA--- 554 GK + Y+ M D++ L Y ++ + + L+ + K R Sbjct 2420 YKGKKQDYFQDMDSFDKERLLFLSCERLFYGQKGIWNGSLKAELRPLEKVQANKTRTFTA 2479 Query 555 ---RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 T+ G +C N QF+ L +G +KFYGGW +++ + Sbjct 2480 APIDTLLGAKVCVDDFNNQFYSFNLI-------CPWTVGMTKFYGGWDKLMRALPDGWVY 2532 Query 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC-G 670 H G + P +L + S+ L N A+++ ++ Sbjct 2533 CHADGSQFDS--SLTPLLLNSVLSIRSFFMEDWWVGKE----MLENLYAEIVYTPILTPD 2586 Query 671 GSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN 705 G+++ K G +SG +T N++ + + + Sbjct 2587 GTIFKKFRGNNSGQPSTVVDNTLMVVISMYYSCIK 2621 >sp|P29152|POLG_PSBMV Genome polyprotein OS=Pea seed-borne mosaic virus (strain DPD1) OX=31736 PE=1 SV=1 Length=3206 Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 58/291 (20%), Positives = 103/291 (35%), Gaps = 42/291 (14%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTIT 540 + + I +L+ +A GK + Y++ + D++ + + K+ V Sbjct 2507 VTDAEAIFQSLNMNAAVGAMYQGKKKDYFEDFTAADRELIVKQSCERLFLGKKGVWNGSL 2566 Query 541 QMNLK---YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGT 591 + L+ K R T+ G +C N F+ L+ +G Sbjct 2567 KAELRPIEKVHENKTRTFTAAPLDTLLGGKVCVDDFNNFFYSCHLRG-------PWTVGI 2619 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCD--RAMPNMLRIMASLVLARKHTTCCSLS 649 +KFY GW+ L + GW Y D R ++ + + VL + Sbjct 2620 TKFYAGWNEFLSKLPD--------GWLYCDADGSRFDSSLTPYLINAVLELRLRFMEEWD 2671 Query 650 HRFYRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALL 708 L N +++ + GS+ K G +SG +T N++ I + LL Sbjct 2672 AGEQMLKNLYTEIIYTPIATPDGSVIKKTKGNNSGQPSTVVDNTLMVILAMQYS--LQLL 2729 Query 709 STDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILS 759 D D+ VR + + L D +FV L HFS + L+ Sbjct 2730 GVDFET-QDEVVRYFANG--DDLLIAVRPDCEFV---LKGLEIHFSNLGLN 2774 >sp|Q01500|POLG_PEMVC Genome polyprotein OS=Pepper mottle virus (isolate California) OX=31737 PE=1 SV=1 Length=3068 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 80/219 (37%), Gaps = 22/219 (10%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTIT 540 I + I L+ + GK + Y++ + ED+ + + K V Sbjct 2388 ITDEEEIFKALNITTAVGAMYGGKKKEYFEKFTTEDKAEILRQSCLRLYTGKLGVWEWAL 2447 Query 541 QMNLK-YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVV--IGTSKFYGG 597 + L+ N+ RT I + + + L ++ +G +KFYGG Sbjct 2448 KAELRSKEKIEANKTRTFTAAPIDTLLGGKVCVDDLNNQFY-SKNIECCWTVGMTKFYGG 2506 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRL 655 W +L + + GW Y D + ++ + + VL ++ + L Sbjct 2507 WDKLLTALPA--------GWIYCDADGSQFDSSLTPYLINAVLTIRYAFMEDWDIGYKML 2558 Query 656 ANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSV 693 N +++ + G++ K G +SG +T NS+ Sbjct 2559 QNLYTEIIYTPISTPDGTIVKKFRGNNSGQPSTVVDNSL 2597 >sp|Q65729|POLG_BSTVG Genome polyprotein (Fragment) OS=Brome streak virus (strain German) OX=117139 PE=2 SV=1 Length=942 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 106/288 (37%), Gaps = 37/288 (13%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK-------RNVIPTITQMNLKY 546 I N+L+ A GK + Y+ + E+ + +F + V + + L+ Sbjct 225 IFNDLNLDAAMGALYAGKKKDYFVEATDEEIEEMFLRSAGKICANGHGVWSALLKAELRP 284 Query 547 A-ISAKNRART--------VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 A A N+ RT + G N+QF+++ L +G +KF G Sbjct 285 AEKVAANKTRTFTSAPIDILFGAKAVVDDFNKQFYKRHLLG-------PWTVGINKFNKG 337 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 W + +++ + D + D + P ++ + ++ L + L Sbjct 338 WDLLARSLMR---YEWFIDADGSQFDSSITPLLMNAVLTIRLYFMERDDITE----LMLR 390 Query 657 NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKI 715 N Q++S ++ G + K G +SG +T N++ + A+ +S + Sbjct 391 NLYTQIISTCMLAEDGLIVQKHRGNNSGQPSTVVDNTL-CLMIAMEYARQRAISDGHLNM 449 Query 716 ADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV 763 +YV N L ++V + ++ L ++ DDA Sbjct 450 QMRYVCNGDDLLINANEEAKEVVQNKYEQYIKELELNYCF----DDAF 493 >sp|Q8JV21|POLG_LJUV1 Genome polyprotein OS=Ljunganvirus 1 OX=1001061 PE=1 SV=1 Length=2253 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 15/175 (9%) Query 545 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAAT--RGATVVIGTSKFYGGWHNML 602 K A+ + R + SI + R L ++I T + + +G + + W M+ Sbjct 1955 KKEKIAQGKTRCIEACSIDYVIAYRVVMSSLYEAIYQTPAQELGLAVGMNP-WTDWDPMI 2013 Query 603 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 662 +V P+ G DY D ++ L +LA H ++ + N V Sbjct 2014 -----NVLQPYNYGLDYSSYDGSLSEQLMRYGVEILAYCHEQPEAVMILHEPVINSQHLV 2068 Query 663 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIAD 717 + E+ GG SG T NS+ N+ L + I Sbjct 2069 MDEIWHVN-------GGMPSGAPCTTVLNSICNLLVCTYLAYEQSLDIEVLPIVY 2116 >sp|Q6XW15|POLG_BTMV Genome polyprotein OS=Beet mosaic virus OX=114921 PE=3 SV=1 Length=3085 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 54/314 (17%), Positives = 116/314 (37%), Gaps = 27/314 (9%) Query 454 DYYRYNLP-TMCDIRQLLF---VVEVVDKYFDCYDGGCINANQV--IVNNLDKSAGFPFN 507 D+ +Y P T+ + F V V++ D G C I ++L+ A Sbjct 2365 DFLKYAGPITVGVVNTNSFEDAVASVINMLEDLDYGECAYVTDPDSIFDSLNMKAAVGAL 2424 Query 508 KWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK-YAISAKNRARTVAG 559 GK + Y++ ++ +++ L + K V + L+ +N+ RT Sbjct 2425 YKGKKKEYFEQLNTTEREDLLRLSCERLYEGKMGVWNGSLKAELRPKEKLEQNKTRTFTA 2484 Query 560 VSICSTMTNRQFHQKLLKSIAA-TRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWD 618 I + + + + +G +KFYGGW+ +L+ + GW Sbjct 2485 APIDTLLGGKVCVDDFNNRFYSLNLKGPWSVGMTKFYGGWNELLQKLPD--------GWI 2536 Query 619 YPKCDRAM--PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC-GGSLYV 675 Y D + ++ + + V+ + L N +++ ++ G++ Sbjct 2537 YCDADGSQFDSSLTPYLINAVVQIREHFMEDWEIGRTMLRNFYTEIVYTPILTPDGTIVK 2596 Query 676 KPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNR 735 K G +SG +T N++ I A + K ++ N L +Y ++ Sbjct 2597 KFKGNNSGQPSTVVDNTLMVILAMHYAMHQQCWKEEEMKEKIRFFANGD-DLLIAIYPSK 2655 Query 736 DVDTDFVNEFYAYL 749 + + ++E++ L Sbjct 2656 EKFLNVLSEYFHEL 2669 >sp|Q02963|POLG_PVYHU Genome polyprotein OS=Potato virus Y (strain Hungarian) OX=31739 PE=3 SV=1 Length=3061 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 96/276 (35%), Gaps = 26/276 (9%) Query 454 DYYRYNLP---TMCDIRQLLFVVEVVDKYFDCY---DGGCINANQVIVNNLDKSAGFPFN 507 D +Y+ P + D + V Y + I Q I L+ A Sbjct 2347 DIMKYSKPIDVGIVDCDAFEEAINRVIIYLQVHGFQKCNYITDEQEIFKALNMKAAVGAM 2406 Query 508 KWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM---NLKYAISAK-----NRARTVAG 559 GK + Y++ + D++ + + + + +LK + K N+ RT Sbjct 2407 YGGKKKDYFEHFTEADKEEIVMQSCPRLYKGSLGIWNGSLKAELRCKEKILANKTRTFTA 2466 Query 560 VSICSTMTNRQFHQKLLKSIAATRGATVV--IGTSKFYGGWHNMLKTVYSDVENPHLMGW 617 + + + + ++ +G +KFYGGW +L+ + EN Sbjct 2467 APLDTLLGGKVCVDDFNNQFY-SKNIECCWTVGMTKFYGGWDRLLRRLP---ENWVYCDA 2522 Query 618 DYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC-GGSLYV 675 D + D + P ++ VL + T L N +++ + G++ Sbjct 2523 DGSQFDSSLTPYLINA----VLIIRSTYMEDWDLGLQMLRNLYTEIIYTPISTPDGTIVK 2578 Query 676 KPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 K G +SG +T NS+ + A + + + Sbjct 2579 KFRGNNSGQPSTVVDNSLMVVLAMHYALIKECVEFE 2614 >sp|Q65730|POLG_BSTV1 Genome polyprotein OS=Brome streak virus (strain 11-Cal) OX=117138 PE=3 SV=1 Length=3093 Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 105/288 (36%), Gaps = 37/288 (13%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK-------RNVIPTITQMNLKY 546 I N+L+ A GK + Y+ + E+ + +F + V + + L+ Sbjct 2392 IFNDLNLDAAMGALYAGKKKDYFVEATDEEIEEMFLRSAGKICANGHGVWSALLKAELRP 2451 Query 547 A-ISAKNRART--------VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 A A N+ RT + G N+QF+++ L +G +KF G Sbjct 2452 AEKVAANKTRTFTSAPIDILFGAKAVVDDFNKQFYKRHLLG-------PWTVGINKFNKG 2504 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 W + +++ + D + D + P ++ + ++ L + L Sbjct 2505 WDLLARSLMR---YEWFIDADGSQFDSSITPLLMNAVLTIRLYFMERDDITE----LMLR 2557 Query 657 NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKI 715 N Q++S ++ G + K G +SG +T N++ + A+ +S + Sbjct 2558 NLYTQIISTCMLAEDGLIVQKHRGNNSGQPSTVVDNTL-CLMIAMEYARQRAISDGHLNM 2616 Query 716 ADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV 763 +YV N L +DV ++ L ++ DDA Sbjct 2617 QMRYVCNGDDLLINANEEAKDVVQGKYEQYIKELELNYCF----DDAF 2660 >sp|Q90069|POLG_SBMVG Genome polyprotein OS=Soybean mosaic virus (strain G2) OX=103931 PE=3 SV=1 Length=3066 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 48/283 (17%), Positives = 99/283 (35%), Gaps = 36/283 (13%) Query 436 ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF-----DCYDGGCINA 490 K FF + +++ D+ + ++ ++ + + + + YD + A Sbjct 2352 AFKRGFFKYNKPVVLNEVDFQSFERAVAG-VKLMMMEFDFKECVYVTDPDEIYDSLNMKA 2410 Query 491 NQVIVNNLDKSAGF-PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLK---Y 546 K F + + K RL Y S + LF Y ++ V + L+ Sbjct 2411 AVGAQYKGKKQDYFSGMDSFDKERLLYLSC-----ERLF-YGEKGVWNGSLKAELRPIEK 2464 Query 547 AISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600 + K R T+ G +C N QF+ L +G +KFY GW Sbjct 2465 VQANKTRTFTAAPIDTLLGAKVCVDDFNNQFYSLNLT-------CPWTVGMTKFYRGWDK 2517 Query 601 MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECA 660 +++++ H G + P +L + + L N A Sbjct 2518 LMRSLPDGWVYCHADGSQFDS--SLTPLLLNAVLDVRSFFMEDWWVGRE----MLENLYA 2571 Query 661 QVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA 702 +++ ++ G+++ K G +SG +T N++ + + Sbjct 2572 EIVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLMVVIALYYS 2614 >sp|P21231|POLG_SBMVN Genome polyprotein OS=Soybean mosaic virus (strain N) OX=12223 PE=1 SV=2 Length=3066 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 49/273 (18%), Positives = 98/273 (36%), Gaps = 38/273 (14%) Query 454 DYYRYNLPT-------MCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 D+++YN P R + V +++ FD + + I ++L+ A Sbjct 2356 DFFKYNKPVVLNEVDFQSFERAVAGV-KLMMMEFDFKECVYVTDPDEIYDSLNMKAAVGA 2414 Query 507 NKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLK---YAISAKNRA-- 554 GK + Y+ M D++ L Y ++ V + L+ + K R Sbjct 2415 QYKGKKQDYFSGMDSFDKERLLYLSCERLFYGEKGVWNGSLKAELRPIEKVQANKTRTFT 2474 Query 555 ----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 T+ G +C N QF+ L +G +KFY GW +++++ Sbjct 2475 AAPIDTLLGAKVCVDDFNNQFYSLNLT-------CPWTVGMTKFYRGWDKLMRSLPDGWV 2527 Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC- 669 H G + P +L + + L N A+++ ++ Sbjct 2528 YCHADGSQFDS--SLTPLLLNAVLDVRSFFMEDWWVGRE----MLENLYAEIVYTPILAP 2581 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA 702 G+++ K G +SG +T N++ + + Sbjct 2582 DGTIFKKFRGNNSGQPSTVVDNTLMVVIAMYYS 2614 >sp|P89876|POLG_LMVE Genome polyprotein OS=Lettuce mosaic virus (strain E) OX=117131 PE=3 SV=1 Length=3255 Score = 44.3 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 66/413 (16%), Positives = 136/413 (33%), Gaps = 79/413 (19%) Query 475 VVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK 532 V+ + GC + + I L+ A GK R Y++S E+++ + + Sbjct 2554 VIKRLEKLGFSGCEYVTDEEAIFQALNMKAAVGALYSGKKRDYFESYGPEEKENILRESC 2613 Query 533 RN-------VIPTITQMNLK---YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSI-AA 581 + V + L+ ++ K R T A + + + + Sbjct 2614 KRLYTGKFGVWNGSLKSELRPMEKVMANKTRVFTAAPLDTL--LAGKVCVDDFNNYFYSK 2671 Query 582 TRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLA 639 A +G +KFYGGW+ +L + GW Y D + ++ + + VL Sbjct 2672 NIEAPWTVGMTKFYGGWNELLTKLPD--------GWVYCDADGSQFDSSLSPFLINSVLR 2723 Query 640 RKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP-GGTSSGDATTAYANSVFNICQ 698 + L N +++ ++ S VK G +SG +T N++ Sbjct 2724 IRLKFMEDWDLGEQMLKNLYTEIVYTAILTPDSTIVKKFKGNNSGQPSTVVDNTL----- 2778 Query 699 AVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMIL 758 V ++ +K+ F +E + K+F + Sbjct 2779 ----MVVLAMTYTLHKL------------------------GFEDEEQDSMCKYF---VN 2807 Query 759 SDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTM 818 DD ++ Y S + F+ + F S + T+ E Sbjct 2808 GDDLIIAIKPEYESL-----LDQFQ-------HCFKSLGLNYDFNSRTRKREELWFMSHC 2855 Query 819 LVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTK 871 +K+ +++P +P RI+ ++ +E + I+++ K Sbjct 2856 GIKKDG--IFIPKLEPERIVS---ILEWDRSDQPVHRLEAICAAMIESWGYDK 2903 >sp|P36287|POLG_SMSV4 Genome polyprotein (Fragment) OS=San Miguel sea lion virus serotype 4 OX=36407 GN=ORF1 PE=3 SV=2 Length=1214 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 35/188 (19%), Positives = 72/188 (38%), Gaps = 17/188 (9%) Query 536 IPTITQMNLKYAISAKNRA-----RTVAGVSICSTMTNRQFHQKLLKSIAATRG-ATVVI 589 +P + LK + K++ R + G + + R +++ +SI A + + Sbjct 846 LPHEYALGLKDELRPKDKVAVGKRRLIWGCDVGVSTVCRAAFKRVSESIMANHALGFIQV 905 Query 590 GTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLS 649 G + ++ K + + + + DY K D P + + +L + Sbjct 906 GINMDGPAVEDLFKRLERPKHDRYCV--DYSKWDSTQPPKVTSQSIDILRH-------FT 956 Query 650 HRFYRLANECAQVLSEMVMCGGSLYVK-PGGTSSGDATTAYANSVFNICQAVTANVNALL 708 + + + CA + S + + K GG SG T+ NS+ N C V + V L Sbjct 957 DKSPIVDSACATLKSNPIGIFNGVAFKVAGGLPSGMPLTSIINSL-NHCLMVGSAVVKAL 1015 Query 709 STDGNKIA 716 G +++ Sbjct 1016 EDSGVQVS 1023 >sp|O11436|POLG_RGMVD Genome polyprotein OS=Ryegrass mosaic virus (isolate Denmark/Danish) OX=652106 PE=3 SV=1 Length=3086 Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 51/275 (19%), Positives = 101/275 (37%), Gaps = 26/275 (9%) Query 445 DGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGC-----INANQVIVNNLD 499 + A + D Y +P + ++ F V D Y+ D G I I ++++ Sbjct 2305 NREAFVKDITKYDTEIP-IGNLSITDFENAVEDTYYILKDSGIEQCNYITDAIPIFDSMN 2363 Query 500 KSAGFPFNKWGKARLYYDSMSYEDQDALFAYT---KRNVIPTITQMNLKYAISAK----- 551 A GK + Y+++ + + + + + R I +LK + +K Sbjct 2364 MKAATGALYGGKKKDYFENYTDDMKQNILKESYIRLREGKMGIWNGSLKAELRSKEKVEA 2423 Query 552 NRARTVAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 N+ R + + + + AA +G +KF+G W++ L + Sbjct 2424 NKTRVFTAAPLDTLLAGKGCVDDFNNQFYAAHLKGPWTVGITKFFGRWNDFLSELPP--- 2480 Query 611 NPHLMGWDYPKCD--RAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 GWDY D R ++ + + VL + + + L N +++ + Sbjct 2481 -----GWDYFDADGSRFDSSLTPFLLNAVLNIRKKFMINWAFGQRCLGNLYTEIIYTPIA 2535 Query 669 C-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTA 702 GS+ K G +SG +T N++ I A Sbjct 2536 TPDGSVVKKMRGNNSGQPSTVVDNTIMVIIAMQYA 2570 >sp|P36286|POLG_SMSV1 Genome polyprotein OS=San Miguel sea lion virus serotype 1 OX=36406 GN=ORF1 PE=3 SV=3 Length=1879 Score = 42.3 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 68/184 (37%), Gaps = 17/184 (9%) Query 536 IPTITQMNLKYAISAKNRA-----RTVAGVSICSTMTNRQFHQKLLKSIAATRG-ATVVI 589 +P + LK + K++ R + G + + R +++ +SI A + + Sbjct 1511 LPHEYALGLKDELRPKDKVAVGKRRLIWGCDVGVSTVCRAAFKRVSESIMANHALGFIQV 1570 Query 590 GTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLS 649 G + + K + + + + DY K D P + + +L + Sbjct 1571 GINMDGPAVEDPFKRLERPKHDRYCV--DYSKWDSTQPPKVTSQSIDILRH-------FT 1621 Query 650 HRFYRLANECAQVLSEMVMCGGSLYVK-PGGTSSGDATTAYANSVFNICQAVTANVNALL 708 + + + CA + S + + K GG SG T+ NS+ N C V + V L Sbjct 1622 DKSPIVDSACATLKSNPIGIFNGVAFKVAGGLPSGMPLTSIINSL-NHCLMVGSAVVKAL 1680 Query 709 STDG 712 G Sbjct 1681 EDSG 1684 >sp|P04517|POLG_TEV Genome polyprotein OS=Tobacco etch virus OX=12227 PE=1 SV=1 Length=3054 Score = 41.9 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 39/230 (17%), Positives = 80/230 (35%), Gaps = 28/230 (12%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTIT 540 I + I + L+ A GK + ++ ++Q+A+ K + Sbjct 2391 ITDPEEIFSALNMKAAMGALYKGKKKEALSELTLDEQEAMLKASCLRLYTGKLGIWNGSL 2450 Query 541 QMNLK-YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAA-TRGATVVIGTSKFYGGW 598 + L+ N+ RT I + + + A +G +KFY GW Sbjct 2451 KAELRPIEKVENNKTRTFTAAPIDTLLAGKVCVDDFNNQFYDLNIKAPWTVGMTKFYQGW 2510 Query 599 HNMLKTVYSDVENPHLMGWDYPKCDRA------MPNMLRIMASLVLARKHTTCCSLSHRF 652 + +++ + S GW Y D + P ++ + + LA Sbjct 2511 NELMEALPS--------GWVYCDADGSQFDSSLTPFLINAVLKVRLAFMEE----WDIGE 2558 Query 653 YRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVT 701 L N +++ ++ G++ K G +SG +T N++ I + Sbjct 2559 QMLRNLYTEIVYTPILTPDGTIIKKHKGNNSGQPSTVVDNTLMVIIAMLY 2608 >sp|P19723|POLG_PRSVP Genome polyprotein (Fragment) OS=Papaya ringspot virus (strain P / mutant HA 5-1) OX=31730 PE=3 SV=1 Length=675 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 50/278 (18%), Positives = 97/278 (35%), Gaps = 40/278 (14%) Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 T+ G +C N F+ K ++ +G +KFY GW L+ + D Sbjct 46 TLLGAKVCVDDFNNWFYSKNME-------CPWTVGMTKFYKGWDEFLR-KFPD------- 90 Query 616 GWDYPKCDRA------MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 GW Y D + P +L + S+ L L N ++ ++ Sbjct 91 GWVYCDADGSQFDSSLTPYLLNAVLSIRLWAMED----WDIGEQMLKNLYGEITYTPILT 146 Query 670 -GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK------IADKYVRN 722 G++ K G +SG +T N++ + A A T + I + Sbjct 147 PDGTIVKKFKGNNSGQPSTVVDNTLMVLITMYYALRKAGYDTKTQEDMCVFYINGDDLCI 206 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHF---SMMILSDDAVV---CFNSTYASQGLV 776 H +E + + + Y + ++H ++ +S ++ + + +V Sbjct 207 AIHPDHEHVLDSFSSSFAELGLKYDFAQRHRNKQNLWFMSHRGILIDDIYIPKLEPERIV 266 Query 777 ASIKNFKSVL--YYQNNVFMSEAKCWTETDLTKGPHEF 812 A ++ KS L + + + + W DLT F Sbjct 267 AILEWDKSKLPEHRLEAITAAMIESWGHGDLTHQIRRF 304 >sp|Q85197|POLG_PVMA Genome polyprotein OS=Potato virus A OX=12215 PE=1 SV=1 Length=3059 Score = 41.6 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 56/362 (15%), Positives = 120/362 (33%), Gaps = 53/362 (15%) Query 440 FFFAQDGNAAISDYDYYRYNLPTMC-------DIRQLLFVVEVVDKYFDCYDGGCINANQ 492 F+ N D +Y+ L ++ + ++ + + Sbjct 2332 FYKPSKLNREAYTQDLMKYSKVIQVGEVDCGVFESALTGLLHNLGRWGFTTACYTTDEDS 2391 Query 493 VIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN-------VIPTITQMNLK 545 + L+ A GK R Y+D+MS +++ L + + V + L+ Sbjct 2392 IYT-ALNMKAAVGALYRGKKRDYFDAMSPSEREHLLFLSCKRLYFGQLGVWNGSLKAELR 2450 Query 546 -YAISAKNRART--------VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYG 596 N+ RT + G +C N F+ LK A +G +KFYG Sbjct 2451 PKEKVDLNKTRTFTAAPIETLLGGKVCVDDFNNMFYSLHLK-------APWSVGMTKFYG 2503 Query 597 GWHNMLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRL 655 W+ ++ ++ D + D ++ P M+ + + L L Sbjct 2504 TWNQLM---CKLPDDWVYCDADGSQFDSSISPYMINAVLRIRLHFMED----WDIGSQML 2556 Query 656 ANECAQV-LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALL------ 708 N ++ + L K G +SG +T N++ + A + + + Sbjct 2557 QNLYTEIGTHQSQHQMAQLLKKFKGNNSGQPSTVVDNTLLVVLALHYALLKSGIPLEEQD 2616 Query 709 -----STDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV 763 +G+ + +++H+L ++ + EF + + + +S A+ Sbjct 2617 SVCAYGVNGDDLLIAIRPDMEHKL--DGFQALFSELGLNYEFNSRSKDKKDLWFMSHKAI 2674 Query 764 VC 765 C Sbjct 2675 QC 2676 >sp|P31999|POLG_LMV0 Genome polyprotein OS=Lettuce mosaic virus (strain 0 / isolate French) OX=117132 PE=2 SV=3 Length=3255 Score = 41.2 bits (95), Expect = 0.057, Method: Composition-based stats. Identities = 42/235 (18%), Positives = 83/235 (35%), Gaps = 26/235 (11%) Query 475 VVDKYFDCYDGGC--INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTK 532 V+ + GC + + I L+ A GK R Y++ E+++ + + Sbjct 2554 VIKRLERLGFSGCEYVTDEEAIFQALNMKAAVGALYSGKKRDYFEGYGPEEKENILRESC 2613 Query 533 RN-------VIPTITQMNLK---YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSI-AA 581 + V + L+ ++ K R T A + + + + Sbjct 2614 KRLYTGKFGVWNGSLKSELRPMEKVMANKTRVFTAAPLDTL--LAGKVCVDDFNNYFYSK 2671 Query 582 TRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAM--PNMLRIMASLVLA 639 A +G +KFYGGW+ +L + GW Y D + ++ + + VL Sbjct 2672 NIEAPWTVGMTKFYGGWNELLTKLPD--------GWVYCDADGSQFDSSLSPFLINSVLR 2723 Query 640 RKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP-GGTSSGDATTAYANSV 693 + L N +++ ++ S VK G +SG +T N++ Sbjct 2724 IRLKFMEDWDLGEQMLKNLYTEIVYTAILTPDSTIVKKFKGNNSGQPSTVVDNTL 2778 >sp|P36312|POL1_CPSMV RNA1 polyprotein OS=Cowpea severe mosaic virus (strain DG) OX=31716 PE=3 SV=1 Length=1858 Score = 40.8 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 26/157 (17%), Positives = 59/157 (38%), Gaps = 8/157 (5%) Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 K R TV + + + R+F + ++ + + +G + + W + ++ + Sbjct 1361 KTRCFTVLPMEY-NLVVRRKFLKFVVFIMKNRHRLSCQVGINPYGMEWSRLAMSLLE--K 1417 Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCG 670 +++ DY D + + + S ++ + C S + N S +C Sbjct 1418 GNNILCCDYSSFDGLLTKQVMHLMSEMI---NELCGGSSRLKQQRTNLLMACCSRYALCK 1474 Query 671 GSLYVKPGGTSSGDATTAYANSVFN--ICQAVTANVN 705 G ++ G SG T NS+FN + + + Sbjct 1475 GEVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKIC 1511 >sp|P19724|POLG_PRSVW Genome polyprotein (Fragment) OS=Papaya ringspot virus (strain W) OX=12207 PE=3 SV=1 Length=675 Score = 40.8 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 50/278 (18%), Positives = 97/278 (35%), Gaps = 40/278 (14%) Query 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 T+ G +C N F+ K ++ +G +KFY GW L+ + D Sbjct 46 TLLGAKVCVDDFNNWFYSKNME-------CPWTVGMTKFYKGWDEFLR-KFPD------- 90 Query 616 GWDYPKCDRA------MPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 GW Y D + P +L + S+ L L N ++ ++ Sbjct 91 GWVYCDADGSQFDSSLTPYLLNAVLSIRLWAMED----WDIGEQMLKNLYGEITYTPILT 146 Query 670 -GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK------IADKYVRN 722 G++ K G +SG +T N++ + A A T + I + Sbjct 147 PDGTIVKKFKGNNSGQPSTVVDNTLMVLITMYYALRKAGYDTKTQEDMCVFYINGDDLCI 206 Query 723 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHF---SMMILSDDAVV---CFNSTYASQGLV 776 H +E + + + Y + ++H ++ +S ++ + + +V Sbjct 207 AIHPDHEHVLDSFSRSFAELGLKYDFTQRHRNKQNLWFMSHRGILIDDIYIPKLEPERIV 266 Query 777 ASIKNFKSVL--YYQNNVFMSEAKCWTETDLTKGPHEF 812 A ++ KS L + + + + W DLT F Sbjct 267 AILEWDKSKLPEHRLEAITAAMIESWGYGDLTHQIRRF 304 >sp|P18247|POLG_PVYN Genome polyprotein OS=Potato virus Y (strain N) OX=12219 PE=1 SV=2 Length=3063 Score = 40.8 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 40/236 (17%), Positives = 86/236 (36%), Gaps = 20/236 (8%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM---NL 544 + Q I L+ A + K + Y++ + D++ + + + + + +L Sbjct 2389 VTDEQEIFKALNMKAAVGASYGCKKKDYFEHFTDADKEEIVMQSCLRLYKGLLGIWNGSL 2448 Query 545 KYAISAK-----NRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVV--IGTSKFYGG 597 K + K N+ RT + + + + ++ +G +KFYGG Sbjct 2449 KAELRCKEKILANKTRTFTAAPLDTLLGGKVCVDDFNNQFY-SKNIECCWTVGMTKFYGG 2507 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRA-MPNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 W +L+ + EN D + D + P ++ VL + T L Sbjct 2508 WDKLLRRLP---ENWVYCDADGSQFDSSLTPYLINA----VLTIRSTYMEDWDVGLQMLR 2560 Query 657 NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 N +++ + G++ K G +SG +T NS+ + A + + + Sbjct 2561 NLYTEIVYTPISTPDGTIVKKFRGNNSGQPSTVVDNSLMVVLAMHYALIKECVEFE 2616 >sp|O73556|POLG_HPE2W Genome polyprotein OS=Human parechovirus 2 (strain Williamson) OX=122962 PE=3 SV=1 Length=2179 Score = 40.8 bits (94), Expect = 0.084, Method: Composition-based stats. Identities = 42/250 (17%), Positives = 81/250 (32%), Gaps = 37/250 (15%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN---VIPTITQMNL 544 + + V +L SAG+ F K G + + + + + Q+ Sbjct 1810 LGTSHVNSMDLSTSAGYSFVKSGYKKKDLICLEPFSVSPMLEKLVQEKFHNLLKGNQITT 1869 Query 545 KYAISAKN-----------RARTVAGVSICSTMTNRQFHQKLLKSIAAT--RGATVVIGT 591 + K+ + R + I + R ++ I T + + +G Sbjct 1870 IFNTCLKDELRKLDKIATGKTRCIEACEIDYCIVYRMIMMEIYDKIYQTPCYYSGLAVGI 1929 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHR 651 + Y WH M+ + N + DY + D ++ +ML A VLA H + Sbjct 1930 NP-YRDWHFMINAL-----NDYNYEMDYSQYDGSLSSMLLWEAVQVLAYCHDSP------ 1977 Query 652 FYRLANECAQVLSEMVMCGGSLYVKP----GGTSSGDATTAYANSVFNICQAVTANVNAL 707 + Q+ ++ ++ + GG SG T NS+ N+ + Sbjct 1978 -----DLVMQLHKPVIDSDHVVFNERWLIHGGMPSGSPCTTVLNSLCNLMMCIYTTNLIS 2032 Query 708 LSTDGNKIAD 717 D I Sbjct 2033 PGIDCLPIVY 2042 >sp|Q9WAL8|POL1_SDVS5 RNA1 polyprotein OS=Satsuma dwarf virus (isolate Satsuma mandarin/Japan/S-58/1977) OX=650481 PE=3 SV=1 Length=2081 Score = 40.4 bits (93), Expect = 0.099, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 51/146 (35%), Gaps = 7/146 (5%) Query 553 RARTVAGVSICSTMTNRQFHQKLLKS-IAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + R + + R++ ++ + A +G + + W +L + Sbjct 1622 KTRIFEILPFQINIIIRRYLMFWMQLLMVAHDELPSKVGINVYSESWDRLLGRHTRLANH 1681 Query 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 DY D + P R++ ++ + + N VL+ ++ G Sbjct 1682 FT---GDYSGFDTSTP---RVLVYAIIDKINELADDGEVNQRTRRNIIRFVLNRYLISDG 1735 Query 672 SLYVKPGGTSSGDATTAYANSVFNIC 697 LY GGT SG A T NSV N Sbjct 1736 VLYEIHGGTPSGFAPTVMINSVVNEF 1761 >sp|Q66578|POLG_HPE1H Genome polyprotein OS=Human parechovirus 1 (strain Harris) OX=103911 PE=1 SV=1 Length=2180 Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 42/250 (17%), Positives = 82/250 (33%), Gaps = 37/250 (15%) Query 488 INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN---VIPTITQMNL 544 + + V +L SAG+ F K G + + L ++ + Q+ Sbjct 1811 LGTSHVNSMDLSTSAGYSFVKSGYKKKDLICLEPFSVAPLLERLVQDKFHNLLKGNQITT 1870 Query 545 KYAISAKN-----------RARTVAGVSICSTMTNRQFHQKLLKSIAAT--RGATVVIGT 591 + K+ + R + + + R ++ I T + + +G Sbjct 1871 TFNTCLKDELRKLDKIASGKTRCIEACEVDYCIVYRMIMMEIYDKIYQTPCYYSGLAVGI 1930 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHR 651 + Y WH M+ + N + DY + D ++ +ML A VLA H + Sbjct 1931 NP-YKDWHFMINAL-----NDYNYEMDYSQYDGSLSSMLLWEAVEVLAYCHDSP------ 1978 Query 652 FYRLANECAQVLSEMVMCGGSLYVKP----GGTSSGDATTAYANSVFNICQAVTANVNAL 707 + Q+ ++ ++ + GG SG T NS+ N+ + Sbjct 1979 -----DLVMQLHKPVIDSDHVVFNERWLIHGGMPSGSPCTTVLNSLCNLMMCIYTTNLIS 2033 Query 708 LSTDGNKIAD 717 D I Sbjct 2034 PGIDCLPIVY 2043 >sp|Q9DUN3|POLG_VESVA Genome polyprotein OS=Vesicular exanthema of swine virus serotype A48 (isolate Swine/United States/A48/1948) OX=85617 GN=ORF1 PE=3 SV=1 Length=1881 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 68/184 (37%), Gaps = 17/184 (9%) Query 536 IPTITQMNLKYAISAKNRA-----RTVAGVSICSTMTNRQFHQKLLKSIAATRG-ATVVI 589 +P + LK + K++ R + G + + +++ +SI A + + Sbjct 1513 LPHEYALGLKDELRPKDKVAVGKRRLIWGCDVGVSTVCAAAFKRVSESIMANHALGFIQV 1572 Query 590 GTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLS 649 G + ++ K + + + + DY K D P + + +L + Sbjct 1573 GINMDGPAVEDLFKRLERPKHDRYCV--DYSKWDSTQPPKVTSQSIDILRH-------FT 1623 Query 650 HRFYRLANECAQVLSEMVMCGGSLYVK-PGGTSSGDATTAYANSVFNICQAVTANVNALL 708 + + + CA + S + + K GG SG T+ NS+ N C V + V L Sbjct 1624 DKSPIVDSACATLKSNPIGIFNGVAFKVAGGLPSGMPLTSIINSL-NHCLMVGSAVVKAL 1682 Query 709 STDG 712 G Sbjct 1683 EDSG 1686 >sp|P89201|POLG_SPMMV Genome polyprotein OS=Sweet potato mild mottle virus (isolate Salazar) OX=652105 PE=2 SV=1 Length=3456 Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 94/263 (36%), Gaps = 21/263 (8%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALF--AYTKRN-----VIPTITQMNLKY 546 I ++L+K + GK + ++ ED +L +Y N V + L++ Sbjct 2767 IFDDLNKKSSMGALYSGKKGQWMHGLTPEDAISLAVESYALLNSGHLGVWSGSLKAELRH 2826 Query 547 AISAKN-RARTVAGVSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLKT 604 K + R G I + + + +G +KF GW+ + Sbjct 2827 VDKLKEGKTRVFTGAPIDTLLAGKILVDNFNNYFYKCHLQGPWTVGINKFNRGWNKL--A 2884 Query 605 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 664 Y + + + D + D ++P ++ ++ + + L E V + Sbjct 2885 NYFN-HDWVFIDCDGSRFDSSIPPIMFNAVCMLRSVFGDLDPDENQTLSNLYTEI--VNT 2941 Query 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724 ++ G++ K G +SG +T N++ + A+ + + T + KYV N Sbjct 2942 PILTIEGNIIRKFRGNNSGQPSTVVDNTLI-LMIAMEYAIAKVFVT---RPDIKYVCNGD 2997 Query 725 HRLYECLYRNR--DVDTDFVNEF 745 L R+ + F + F Sbjct 2998 -DLLINCPRSTANAISEHFKDVF 3019 >sp|Q66474|POLG_EC06C Genome polyprotein OS=Echovirus 6 (strain Charles) OX=103913 PE=1 SV=3 Length=2191 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 46/220 (21%), Positives = 81/220 (37%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S D L + +P +T + + + AK Sbjct 1841 LTTSAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKG 1900 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G I T G ++ + + + Sbjct 1901 KSRLIEASSLNDSVAMRQTFGNLYKAFHQNPG----IVTGSAVGCDPDLFWSKIPVMLDG 1956 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1957 HLIAFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCN------SHHLYRDK 2008 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2009 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2047 >sp|A4KZ49|POLG_TRMVU Genome polyprotein OS=Triticum mosaic virus (isolate Triticum aestivum/United States/U06-123/2006) OX=1289472 PE=1 SV=3 Length=3112 Score = 39.3 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 27/145 (19%), Positives = 55/145 (38%), Gaps = 8/145 (6%) Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAAT-RGATVVIGTSKFYGGWHNMLKTVYSDV 609 + + R + + F AT G+ +G +KF GW + + D Sbjct 2510 EKKTRVFTAAPFDVSFGAKAFVDDFNNKFYATQAGSNWTVGINKFNCGWDELARRFNPDW 2569 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV-M 668 + + D + D ++ +L +++ R+H + R L+N Q++ + Sbjct 2570 K---FIDADGSRYDSSLTPLL--FNAVLRIRQHFLRANGFER-RMLSNFYTQLVWTPIST 2623 Query 669 CGGSLYVKPGGTSSGDATTAYANSV 693 G + K G SG +T N++ Sbjct 2624 ITGQIVKKNKGGPSGQPSTVVDNTM 2648 >sp|Q76L40|POL1_BBWVS RNA1 polyprotein OS=Broad bean wilt virus 1 (strain Spinach/United States/ATCC PV-132/1963) OX=649895 GN=RNA1 PE=3 SV=1 Length=1842 Score = 38.9 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (34%), Gaps = 10/159 (6%) Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGA-TVVIGTSKFYGGWHNMLKTVYSDV 609 K+R TV +S + R+ ++ I R +G + + W + + Sbjct 1359 KSRLFTVLPMSY--NLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLE-- 1414 Query 610 ENPHLMGWDYPKCDRAMPNMLRI-MASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 + ++ DY + D +P + + +A + T + C++ + Sbjct 1415 KGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRY----AI 1470 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNAL 707 CG LY G SG T NS+ N A Sbjct 1471 CGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCF 1509 >sp|Q69014|POLG_SVM93 Genome polyprotein (Fragment) OS=Sapporo virus (strain Human/United Kingdom/Manchester/1993) OX=82659 GN=ORF1 PE=1 SV=1 Length=2208 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 87/272 (32%), Gaps = 35/272 (13%) Query 455 YYRYNLPTMCDIRQLLF-VVEVVDKYFDC----YDGGCINANQVIVNNLDKSAGFPFNKW 509 Y PT QLL V V Y + + + +Q ++ PF + Sbjct 1199 LKPYTEPTAGVPPQLLSRAVTHVRSYIETIIGTHRSPVLTYHQACELLERTTSCGPFVQ- 1257 Query 510 GKARLYYDSMSYEDQDAL-------FAYTKRNVIP-TITQMNLKYAIS--AKNRA---RT 556 G Y+D + L + + + P ++ LK + KN+A R Sbjct 1258 GLKGDYWDEEQQQYTGVLANHLEQAWDKANKGIAPRNAYKLALKDELRPIEKNKAGKRRL 1317 Query 557 VAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + G +T+ + + + T V +G + M ++ V L Sbjct 1318 LWGCDAATTLIATAAFKAVATRLQVVTPMTPVAVGINMDSVQMQVMNDSLKGGV----LY 1373 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV--MCGGSL 673 DY K D + + +L R + + + + LS Sbjct 1374 CLDYSKWDSTQNPAVTAASLAILERFAE--------PHPIVSCAIEALSSPAEGYVNDIK 1425 Query 674 YVKPGGTSSGDATTAYANSVFNICQAVTANVN 705 +V GG SG T+ NS+ N V A + Sbjct 1426 FVTRGGLPSGMPFTSVVNSI-NHMIYVAAAIL 1456 >sp|Q672I1|POLG_SVSAP Genome polyprotein OS=Sapporo virus (isolate GI/Human/Germany/pJG-Sap01) OX=291175 PE=3 SV=1 Length=2280 Score = 38.9 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 87/272 (32%), Gaps = 35/272 (13%) Query 455 YYRYNLPTMCDIRQLLF-VVEVVDKYFDC----YDGGCINANQVIVNNLDKSAGFPFNKW 509 Y PT QLL V V Y + + + +Q ++ PF + Sbjct 1271 LKPYTEPTAGVPPQLLSRAVTHVRSYIETIIGTHRSPVLTYHQACELLERTTSCGPFVQ- 1329 Query 510 GKARLYYDSMSYEDQDAL-------FAYTKRNVIP-TITQMNLKYAIS--AKNRA---RT 556 G Y+D + L + + + P ++ LK + KN+A R Sbjct 1330 GLKGDYWDEEQQQYTGVLANHLEQAWDKANKGIAPRNAYKLALKDELRPIEKNKAGKRRL 1389 Query 557 VAGVSICSTMTNRQFHQKLLKSI-AATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 + G +T+ + + + T V +G + M ++ V L Sbjct 1390 LWGCDAATTLIATAAFKAVATRLQVVTPMTPVAVGINMDSVQMQVMNDSLKGGV----LY 1445 Query 616 GWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMV--MCGGSL 673 DY K D + + +L R + + + + LS Sbjct 1446 CLDYSKWDSTQNPAVTAASLAILERFAE--------PHPIVSCAIEALSSPAEGYVNDIK 1497 Query 674 YVKPGGTSSGDATTAYANSVFNICQAVTANVN 705 +V GG SG T+ NS+ N V A + Sbjct 1498 FVTRGGLPSGMPFTSVVNSI-NHMIYVAAAIL 1528 >sp|P14879|PYR4_MICDP Phycobilisome 31.6 kDa linker polypeptide, phycocyanin-associated, rod OS=Microchaete diplosiphon OX=1197 GN=cpcI3 PE=3 SV=1 Length=285 Score = 38.1 bits (87), Expect = 0.30, Method: Composition-based stats. Identities = 20/85 (24%), Positives = 37/85 (44%), Gaps = 4/85 (5%) Query 708 LSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFN 767 L T+GN ++VR L LY+++ +F + KH D++ + ++ Sbjct 61 LLTNGNITVQEFVRQLAK---SNLYKSKFFSNNFHSRVTELNFKHLLGRAPYDESEIIYH 117 Query 768 ST-YASQGLVASIKNFKSVLYYQNN 791 Y ++G A I ++ YQ N Sbjct 118 LDLYQTKGYEADIDSYIDSAEYQTN 142 >sp|Q9YID8|POLG_HPEV5 Genome polyprotein OS=Human parechovirus 5 (strain CT86-6760) OX=122961 PE=3 SV=1 Length=2188 Score = 38.9 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 83/250 (33%), Gaps = 37/250 (15%) Query 488 INANQVIVNNLDKSAGFPFNKWGKAR---------LYYDSMSYEDQDALFAYTKRNVIPT 538 + + V +L SAG+ K G + + QD K N I T Sbjct 1819 LGTSHVNSMDLSTSAGYSLVKSGYKKKDLICLEPFSVSPMLEKLVQDKFHNLLKGNQITT 1878 Query 539 ITQMNLKYAIS-----AKNRARTVAGVSICSTMTNRQFHQKLLKSIAAT--RGATVVIGT 591 I LK + A + R + + + R ++ I T + + +G Sbjct 1879 IFNTCLKDELRKLDKIAAGKTRCIEACEVDYCIVYRMIMMEIYDKIYQTPCYYSGLAVGI 1938 Query 592 SKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHR 651 + Y WH M+ + N + DY + D ++ +ML A VLA H + Sbjct 1939 NP-YKDWHFMINAL-----NDYNYEMDYSQYDGSLSSMLLWEAVEVLAYCHDSP------ 1986 Query 652 FYRLANECAQVLSEMVMCGGSLYVKP----GGTSSGDATTAYANSVFNICQAVTANVNAL 707 + Q+ ++ ++ + GG SG T NS+ N+ + Sbjct 1987 -----DLVMQLHKPVIDSDHVVFNERWLIHGGMPSGSPCTTVLNSLCNLMMCIYTTNLIS 2041 Query 708 LSTDGNKIAD 717 D I Sbjct 2042 PGVDCLPIVY 2051 >sp|O41174|POLG_PEV9U Genome polyprotein OS=Porcine enterovirus 9 (strain UKG/410/73) OX=64141 PE=1 SV=3 Length=2168 Score = 38.9 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 42/226 (19%), Positives = 82/226 (36%), Gaps = 24/226 (11%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQD----ALFAYTKRNVIPTITQMN---LKYAISA 550 L SAG+P+ G + D ++ E +D +P +T + Sbjct 1819 LTTSAGYPYVTMGIKK--RDILNKETRDVKKMQECIDKYGLNLPMVTYIKDELRSKEKVK 1876 Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 K ++R + S+ ++ R + L K+ G G + + + Sbjct 1877 KGKSRLIEASSLNDSVAMRCYFGNLYKAFHQNPGTLTGCAV----GCDPDTFWSKIPVMM 1932 Query 611 NPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 + L G+DY D ++ P M + + +VL + + + N C S + Sbjct 1933 DGELFGFDYTAYDASLSPLMFQAL-QMVLEKI-----GFGEGKHFIDNLCY---SHHLFR 1983 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKI 715 +VK GG SG + T+ NS+ N T + + +++ Sbjct 1984 DKYYFVK-GGMPSGCSGTSIFNSMINNIIIRTVVLQTYKGIELDQL 2028 >sp|P90245|POL1_BAMMN Genome polyprotein 1 OS=Barley mild mosaic virus (strain Na1) OX=103900 PE=3 SV=1 Length=2258 Score = 38.9 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 55/292 (19%), Positives = 105/292 (36%), Gaps = 44/292 (15%) Query 454 DYYRYNLP----TMCDIRQLLFVVEVVDKYFDCYDGGCI--NANQVIVNNLDKSAGFPFN 507 D +Y+ P C+ +++ + G + QV+++ ++G P Sbjct 1574 DLKKYDRPPHASVFCEDTLTKAKHKMIKILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLY 1633 Query 508 KWGKARLYYDSMSYED--------QDALFAYTKRNVIPTITQMNLK---YAISAKNRART 556 GK +S ++ Q AL T V + L+ + K R T Sbjct 1634 H-GKKIDIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFT 1692 Query 557 VAGVSICSTMT------NRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 A ++ M N+QF++ LK A +G +KF GW + +Y + Sbjct 1693 AAPITSLIAMKYYVDDFNKQFYKTHLK-------APHTVGINKFNRGW----QNLYEKLN 1741 Query 611 NPHLMGWDYPKCDRA-MPNMLRIMASLVLA--RKHTTCCSLSHRFYRLANECAQVLSEMV 667 P GW + D + + + V+ RKH + + E V +++ Sbjct 1742 KP---GWTHGSGDGSRFDSSIDGFLFDVIKDIRKHFMDAEHHKQLDTIYEEI--VNTKIC 1796 Query 668 MCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKY 719 + G + K G +SG +T N++ + + L D ++ D+ Sbjct 1797 LANGLVIQKNCGNNSGQPSTVVDNTL-ALMTSFLYAYARLTGDDTFELMDEN 1847 >sp|Q66849|POLG_EC09H Genome polyprotein OS=Echovirus 9 (strain Hill) OX=103915 PE=3 SV=3 Length=2193 Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 46/220 (21%), Positives = 81/220 (37%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S D L + +P +T + + + AK Sbjct 1843 LTTSAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKG 1902 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G I T G ++ + + + Sbjct 1903 KSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSASGCDPDLFWSKIPVMLDG 1958 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1959 HLIAFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCN------SHHLYRDK 2010 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2011 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2049 >sp|Q9WN78|POLG_EC30B Genome polyprotein OS=Echovirus 30 (strain Bastianni) OX=176284 PE=1 SV=3 Length=2194 Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 46/220 (21%), Positives = 82/220 (37%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S +D L + +P +T + + + AK Sbjct 1844 LTTSAGYPYVALGIKKRDILSKKTKDLAKLKECMDKYGLNLPMVTYVKDELRSAEKVAKG 1903 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G I T G ++ + + + Sbjct 1904 KSRLIEASSLNDSVAMRQTFGNLYKTFHMNPG----IVTGSAVGCDPDLFWSKIPVMLDG 1959 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1960 HLIAFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCN------SHHLYRDK 2011 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2012 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2050 >sp|P21404|POLG_CXA9 Genome polyprotein OS=Coxsackievirus A9 (strain Griggs) OX=12068 PE=1 SV=4 Length=2201 Score = 38.5 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 48/220 (22%), Positives = 81/220 (37%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S D L + +P IT + + + AK Sbjct 1851 LTTSAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMITYVKDQLRSAEKVAKG 1910 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G I T G ++ + + N Sbjct 1911 KSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLNG 1966 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1967 HLIAFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCN------SHHLYRDK 2018 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2019 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2057 >sp|Q9QL88|POLG_CXB6S Genome polyprotein OS=Coxsackievirus B6 (strain Schmitt) OX=231474 PE=1 SV=4 Length=2184 Score = 38.5 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 46/220 (21%), Positives = 82/220 (37%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S +D L + +P +T + + + AK Sbjct 1834 LTTSAGYPYVALGIKKRDILSKKSKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKG 1893 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G I T G ++ + + + Sbjct 1894 KSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDG 1949 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1950 HLIAFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCN------SHHLYRDK 2001 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2002 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2040 >sp|E5D8F2|POLG_HRV15 Genome polyprotein OS=Human rhinovirus C (strain C15) OX=1418033 PE=1 SV=1 Length=2153 Score = 38.5 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 43/205 (21%), Positives = 69/205 (34%), Gaps = 24/205 (12%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAISA----- 550 L SAGFP+ G + + +D L + +P +T LK + A Sbjct 1805 LTTSAGFPYVTMGIKKKDIVNKVTKDVTKLQEMIDKYGIDLPYVT--YLKDELRAPEKIK 1862 Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 K + R + SI T R L A G V+ S +Y+ ++ Sbjct 1863 KGKTRAIEAASINDTTHFRMVFGNLFSVFHANPG---VLTGSAVGCNPDVFWSQMYACMD 1919 Query 611 NPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCG 670 L+ +DY D ++ + + L + H RL N Sbjct 1920 G-ELLAFDYTNYDGSLHPI--WFKA--LGKVLDNLGFPGHLVNRLCNTTHIF-------K 1967 Query 671 GSLYVKPGGTSSGDATTAYANSVFN 695 +Y GG SG T+ N++ N Sbjct 1968 NLIYTVEGGMPSGICGTSIFNTMIN 1992 >sp|P89509|POLG_TUMVJ Genome polyprotein OS=Turnip mosaic virus (strain Japanese) OX=12230 PE=1 SV=2 Length=3164 Score = 38.5 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 41/230 (18%), Positives = 83/230 (36%), Gaps = 35/230 (15%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK- 545 I L+ + GK + Y+ + E ++ + + K V + L+ Sbjct 2477 IFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCERLFLGKMGVWNGSLKAELRP 2536 Query 546 --YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 + K R T+ G +C N QF+ L+ A +G +KFY G Sbjct 2537 LEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLR-------APWSVGMTKFYCG 2589 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 W +L+++ + D + D ++ P ++ + ++ L L Sbjct 2590 WDRLLESLP---DGWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEE----WDIGEVMLR 2642 Query 657 NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN 705 N +++ + G+L K G +SG +T N+ + + N + Sbjct 2643 NLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNT---LMVILAVNYS 2689 >sp|P08291|POLG_CXB1J Genome polyprotein OS=Coxsackievirus B1 (strain Japan) OX=103902 PE=3 SV=3 Length=2182 Score = 38.1 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 46/220 (21%), Positives = 81/220 (37%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S D L + +P +T + + + AK Sbjct 1832 LTTSAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKG 1891 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G I T G ++ + + + Sbjct 1892 KSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDG 1947 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1948 HLVAFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCN------SHHLYRDK 1999 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2000 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2038 >sp|Q9YLJ1|POLG_EC05N Genome polyprotein OS=Echovirus 5 (strain Noyce) OX=176283 PE=3 SV=3 Length=2196 Score = 37.7 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 46/220 (21%), Positives = 82/220 (37%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S +D L + +P +T + + + AK Sbjct 1846 LTTSAGYPYVALGIKKRDILSKRTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKG 1905 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G I T G ++ + + + Sbjct 1906 KSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDG 1961 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1962 HLIAFDYSGYDASLSPV--WFACLKMLLEKLGYTHKETNYIDYLCN------SHHLYRDK 2013 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2014 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2052 >sp|Q66282|POLG_CXB3W Genome polyprotein OS=Coxsackievirus B3 (strain Woodruff) OX=103904 PE=1 SV=3 Length=2185 Score = 37.7 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S D L + +P +T + + + AK Sbjct 1835 LTTSAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKG 1894 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G T G ++ + + + Sbjct 1895 KSRLIEASSLNDSVAMRQTFGNLYKTFHLNPGVV----TGSAVGCDPDLFWSKIPVMLDG 1950 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1951 HLIAFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCN------SHHLYRDK 2002 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2003 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2041 >sp|Q05057|POLG_PYFV1 Genome polyprotein OS=Parsnip yellow fleck virus (isolate P-121) OX=33762 PE=1 SV=1 Length=3027 Score = 37.7 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 30/188 (16%), Positives = 66/188 (35%), Gaps = 12/188 (6%) Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 K R ++ V + R F + +A +++G + W ++ ++ S Sbjct 2458 KTRLFSILPVEF-NMHARRLFLDFNVFVMANRHKHGIMVGINPHSREWSDLAISLASF-- 2514 Query 611 NPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 +P+ D+ D P+ +++ L + R+ ++ Sbjct 2515 SPYGFNGDFANFDGMFHPSSFSMVSELANIFYGNFLSTERDNLTRMLTNRFSLM------ 2568 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYE 729 G++ PGG SG T NS N+ + + L +G + N + Sbjct 2569 KGAILRVPGGGPSGFPMTVIFNSFINLF-YLQSAWIMLARFNGRQDISHP-CNFPKYVRA 2626 Query 730 CLYRNRDV 737 C+Y + ++ Sbjct 2627 CVYGDDNI 2634 >sp|Q04574|POL1_BAYMG Genome polyprotein 1 OS=Barley yellow mosaic virus (isolate Germany) OX=31728 PE=3 SV=1 Length=2412 Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 64/379 (17%), Positives = 125/379 (33%), Gaps = 61/379 (16%) Query 398 VAALTNNVAFQTVKPGNFNKDFYDFAVS-------KGFFKEGSSVELKHFFFAQDGNAAI 450 + + + + V G N D YDF K F E + L + + +D Sbjct 1634 IGQMNKGLIDKHVIVGE-NDDVYDFMREHPTFTWLKDFMNEYAPSVLSYSAYYKDLC--- 1689 Query 451 SDYDYYRYNLPT---MCDIRQLLFVVEVVDKYFD--CYDGGCINANQVIVNNLDKSAGFP 505 +YN + +L + + K + G + Q +V+++ + Sbjct 1690 ------KYNRAKHVLTYNPEELHCATKGLIKMLEDAGLTQGSVRTPQQVVSDIQWNTSAG 1743 Query 506 FNKWGKARLYYDSMSYEDQDALFAYTKRN--------VIPTITQMNLK-YAISAKNRART 556 + GK R +S ++ L ++ V + L+ + R Sbjct 1744 PSYQGKKRDLCAHLSDDEVLHLAEVCRQQFLEGKSTGVWNGSLKAELRTIEKVEAEKTRV 1803 Query 557 VAGVSICSTMTNRQFHQKLLKSIAATR-GATVVIGTSKFYGGWHNMLKTVYSDVENPHLM 615 I S + + K AT A +G +KF GW ++ + P Sbjct 1804 FTASPITSLFAMKFYVDDFNKKFYATNLKAPHTVGINKFGRGWEK----LHDKLNRP--- 1856 Query 616 GW-----DYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 GW D + D ++ P ++ ++ RKH + +E + + + + Sbjct 1857 GWLHGSGDGSRFDSSIDPFFFDVVKTI---RKHFLPSEHHKAIDLIYDEI--LNTTICLA 1911 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYE 729 G + K G +SG +T N++ + A L +K D+ + L R Sbjct 1912 NGMVIRKNVGNNSGQPSTVVDNTL--------VLMTAFLYAYIHKTGDRELALLNERFIF 1963 Query 730 CLYRNRD---VDTDFVNEF 745 + + + F EF Sbjct 1964 VCNGDDNKFAISPQFDEEF 1982 >sp|Q02597|POLG_TUMVQ Genome polyprotein OS=Turnip mosaic virus (strain Quebec) OX=36396 PE=1 SV=2 Length=3163 Score = 37.3 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 41/230 (18%), Positives = 83/230 (36%), Gaps = 35/230 (15%) Query 494 IVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT-------KRNVIPTITQMNLK- 545 I L+ + GK + Y+ + E ++ + + K V + L+ Sbjct 2476 IFEALNMKSAVGALYKGKKKDYFAEFTPEVKEEILKQSCERLFLGKMGVWNGSLKAELRP 2535 Query 546 --YAISAKNRA------RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGG 597 + K R T+ G +C N QF+ L+ A +G +KFY G Sbjct 2536 LEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLR-------APWDVGMTKFYCG 2588 Query 598 WHNMLKTVYSDVENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLA 656 W +L+++ + D + D ++ P ++ + ++ L L Sbjct 2589 WDRLLESLP---DGWVYCDADGSQFDSSLSPYLINAVLNIRLGFMEE----WDVGEVMLR 2641 Query 657 NECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN 705 N +++ + G+L K G +SG +T N+ + + N + Sbjct 2642 NLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNT---LMVILAVNYS 2688 >sp|P89657|RDRP_PMMVJ Replicase large subunit OS=Pepper mild mottle virus (strain Japan) OX=138663 PE=1 SV=1 Length=1612 Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 57/164 (35%), Gaps = 3/164 (2%) Query 447 NAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 + D Y+ ++ T + Q+ V + V+ + G ++ Q + Sbjct 1101 CVSSYLLDMYKVDVSTQYQL-QIESVYKGVNLFVAAPKTGDVSDMQYYYDKCLPGNSTIL 1159 Query 507 NKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAI-SAKNRARTVAGVSICST 565 N++ + S +D + +K +P ++ LK I +A + R + Sbjct 1160 NEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENLVA 1219 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 M R F+ L + ++ KF+ + K ++ Sbjct 1220 MIKRNFNSPELVGVVDIEDTASLV-VDKFFDAYLIKEKKKPKNI 1262 >sp|Q8V736|POLG_CACV4 Genome polyprotein OS=Canine calicivirus (strain 48) OX=292348 GN=ORF1 PE=3 SV=1 Length=1929 Score = 36.9 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 38/193 (20%), Positives = 72/193 (37%), Gaps = 17/193 (9%) Query 531 TKRNVIPTITQMNLKYAISAKNRA-----RTVAGVSICSTMTNRQFHQKLLKSIAATRG- 584 T+ IP Q+ LK + K++ R + G + + +++ +I A Sbjct 1558 TQGVPIPHEYQLGLKDELRPKDKIAVGKRRLIWGCDVGVAVVAASAFKEVSSAIMAMSEF 1617 Query 585 ATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTT 644 + +G + + K +Y H DY K D P + M+ +L Sbjct 1618 DFIQVGINMDGTAVETLYKRLY--TPGTHRYCVDYSKWDSTQPPNVTRMSLELLRH---- 1671 Query 645 CCSLSHRFYRLANECAQVLSEMVMCGGSLYVKP-GGTSSGDATTAYANSVFNICQAVTAN 703 + + + + A + S + G + K GG SG T+ NS+ N C V + Sbjct 1672 ---FTDKSPVVDSAVATLSSPSIAVFGGVSFKTNGGLPSGMPLTSILNSL-NHCLLVGSA 1727 Query 704 VNALLSTDGNKIA 716 + +L + G + Sbjct 1728 IIQVLESKGVDVN 1740 >sp|P16604|POLG_SVDVH Genome polyprotein OS=Swine vesicular disease virus (strain H/3 '76) OX=12076 PE=3 SV=3 Length=2185 Score = 36.9 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S D L + +P +T + + + AK Sbjct 1835 LTTSAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKG 1894 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G I T G ++ + + + Sbjct 1895 KSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDG 1950 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + L +L K ++ L N S + Sbjct 1951 HLIAFDYSGYDASLSPV--WFTCLKLLLEKLGYTNKETNYIDYLCN------SHHLYRDK 2002 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2003 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2041 >sp|P13900|POLG_SVDVU Genome polyprotein OS=Swine vesicular disease virus (strain UKG/27/72) OX=12077 PE=1 SV=3 Length=2185 Score = 36.9 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S D L + +P +T + + + AK Sbjct 1835 LTTSAGYPYVALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKG 1894 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G I T G ++ + + + Sbjct 1895 KSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDG 1950 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + L +L K ++ L N S + Sbjct 1951 HLIAFDYSGYDASLSPV--WFTCLKLLLEKLGYTNKETNYIDYLCN------SHHLYRDK 2002 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2003 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2041 >sp|P29813|POLG_EC11G Genome polyprotein OS=Echovirus 11 (strain Gregory) OX=31705 PE=1 SV=4 Length=2195 Score = 36.9 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 80/220 (36%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAIS---AKN 552 L SAG+P+ G + S D L + +P +T + + + AK Sbjct 1845 LTTSAGYPYVALGIKKRDILSRRTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKG 1904 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L ++ G I T G ++ + + + Sbjct 1905 KSRLIEASSLNDSVAMRQTFGNLYRTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDG 1960 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N + Sbjct 1961 HLIAFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRDK------ 2012 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 Y + GG SG + T+ NS+ N T + D Sbjct 2013 -HYFERGGMPSGYSGTSMFNSMINNIIIRTLMLKVYKGID 2051 >sp|Q66577|POLG_EC09B Genome polyprotein OS=Echovirus 9 (strain Barty) OX=103914 PE=3 SV=3 Length=2203 Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 81/220 (37%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRN--VIPTITQMNLKYAISAKN--- 552 L SAG+P+ G + S +D L + +P +T + + + K+ Sbjct 1853 LTTSAGYPYVALGIKKRDILSKRTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKSPRG 1912 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K G I T G ++ + + + Sbjct 1913 KSRLIEASSLNDSVAMRQTFGNLYKVFHLNPG----IVTGSAVGCDPDVFWSKIPVMLDG 1968 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1969 HLIAFDYSGYDASLSPV--WFACLKLLLEKLGYSSKETNYIDYLCN------SHHLYRDK 2020 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2021 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2059 >sp|P11398|PYR1_MASLA Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod OS=Mastigocladus laminosus OX=83541 GN=cpcC PE=1 SV=3 Length=286 Score = 35.8 bits (81), Expect = 1.5, Method: Composition-based stats. Identities = 27/119 (23%), Positives = 47/119 (39%), Gaps = 11/119 (9%) Query 681 SSGDATTAYANSVFNICQA--VTANVNALLST-----DGNKIADKYVRNLQHRLYECLYR 733 +S + A N+V+ L+S DGN ++VR++ LY+ Sbjct 27 ASREEVEAVINAVYRHVLGNDYIMASERLVSAESLLRDGNLTVREFVRSVAK---SELYK 83 Query 734 NRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNST-YASQGLVASIKNFKSVLYYQNN 791 + F F KH D++ + F+ Y ++G A I ++ + YQNN Sbjct 84 KKFFYNSFQTRFIELNYKHLLGRAPYDESEIVFHLDLYQNKGYDAEIDSYIDSVEYQNN 142 >sp|Q9YLG5|POLG_CXB2O Genome polyprotein OS=Coxsackievirus B2 (strain Ohio-1) OX=231473 PE=1 SV=3 Length=2187 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 14/163 (9%) Query 550 AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 AK ++R + S+ ++ RQ L K+ G I T G +M + + Sbjct 1894 AKGKSRLIEASSLNDSVAMRQTFGNLYKAFHLNPG----IVTGSAVGCDPDMFWSKIPVM 1949 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 + HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1950 LDGHLIAFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCN------SHHLY 2001 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2002 RDKHYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2043 >sp|P03302|POLG_POL3L Genome polyprotein OS=Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B) OX=12088 PE=1 SV=3 Length=2206 Score = 36.2 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 40/223 (18%), Positives = 76/223 (34%), Gaps = 26/223 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRA 554 L SAG+P+ GK + L + ++ L +P +T + K + +K + Sbjct 1857 LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQRLLD-AYGINLPLVTYV--KDELRSKTKV 1913 Query 555 -----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 R + S+ ++ R L + R VV G++ G ++ + + Sbjct 1914 EQGKSRLIEASSLNDSVAMRMAFGNLYAAF--HRNPGVVTGSA--VGCDPDLFWSKIPVL 1969 Query 610 ENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 L +DY D ++ P +L + + + N + + Sbjct 1970 MEEKLFAFDYTGYDASLSPA---WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKIY 2025 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 C GG SG + T+ NS+ N T + D Sbjct 2026 CV------KGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGID 2062 >sp|P12916|POLG_HRV1B Genome polyprotein OS=Human rhinovirus 1B OX=2777147 PE=1 SV=3 Length=2157 Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 23/205 (11%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKR--NVIPTIT----QMNLKYAISAK 551 L+ SAGFP+ G + + +D L + +P IT ++ K ISA Sbjct 1809 LNTSAGFPYVTMGIKKRDLINNKTKDISRLKEALDKYGVDLPMITFLKDELRKKEKISA- 1867 Query 552 NRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVEN 611 + R + SI T+ R L G V+ S + ++ Sbjct 1868 GKTRVIEASSINDTILFRTTFGNLFSKFHLNPG---VVTGSAVGCDPETFWSKIPVMLDG 1924 Query 612 PHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCG 670 +M +DY D ++ P + + ++ +N ++ + Sbjct 1925 DCIMAFDYTNYDGSIHPVWFQALKKVL------------ENLSFQSNLIDRLCYSKHLFK 1972 Query 671 GSLYVKPGGTSSGDATTAYANSVFN 695 + Y GG SG + T+ N++ N Sbjct 1973 STYYEVAGGVPSGCSGTSIFNTMIN 1997 >sp|P29098|RDRP_PMMVS Replicase large subunit OS=Pepper mild mottle virus (strain Spain) OX=31745 PE=3 SV=2 Length=1612 Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 57/164 (35%), Gaps = 3/164 (2%) Query 447 NAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPF 506 + D Y+ ++ T + Q+ V + V+ + G ++ Q + Sbjct 1101 CVSSYLLDMYKVDVSTQXQL-QIESVYKGVNLFVAAPKTGDVSDMQYYYDKCLPGNSTIL 1159 Query 507 NKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAI-SAKNRARTVAGVSICST 565 N++ + S +D + +K +P ++ LK I +A + R + Sbjct 1160 NEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENLVA 1219 Query 566 MTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 M R F+ L + ++ KF+ + K ++ Sbjct 1220 MIKRNFNSPELVGVVDIEDTASLV-VDKFFDAYLIKEKKKPKNI 1262 >sp|Q82122|POLG_HRV16 Genome polyprotein OS=Human rhinovirus 16 OX=31708 PE=1 SV=4 Length=2153 Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 19/203 (9%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDAL-FAYTKRNV-IPTITQMN---LKYAISAKN 552 L+ SAG+P+ G + + +D L A K +V +P IT + K A Sbjct 1805 LNTSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKYDVDLPMITFLKDELRKKDKIAAG 1864 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 + R + SI T+ R + L G + ++ Sbjct 1865 KTRVIEASSINDTILFRTVYGNLFSKFHLNPGVVTGCAV---GCDPETFWSKIPLMLDGD 1921 Query 613 HLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGS 672 +M +DY D ++ + + L RL N S + Sbjct 1922 CIMAFDYTNYDGSIHPI--WFKA--LGMVLDNLSFNPTLINRLCNSKHIFKS-------T 1970 Query 673 LYVKPGGTSSGDATTAYANSVFN 695 Y GG SG + T+ NS+ N Sbjct 1971 YYEVEGGVPSGCSGTSIFNSMIN 1993 >sp|P27641|XRCC5_MOUSE X-ray repair cross-complementing protein 5 OS=Mus musculus OX=10090 GN=Xrcc5 PE=1 SV=4 Length=732 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 14/62 (23%), Positives = 28/62 (45%), Gaps = 3/62 (5%) Query 844 VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDEL---TGHML 900 +DD++ + + + D +P +K PN E+ ++ L L + L H+L Sbjct 454 IDDLIDSMSLVKKNEEEDIVEDLFPTSKIPNPEFQRLYQCLLHRALHLQERLPPIQQHIL 513 Query 901 DM 902 +M Sbjct 514 NM 515 >sp|Q03053|POLG_CXB5P Genome polyprotein OS=Coxsackievirus B5 (strain Peterborough / 1954/UK/85) OX=103907 PE=1 SV=3 Length=2185 Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 14/163 (9%) Query 550 AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 AK ++R + S+ ++ RQ L K+ G I T G ++ + + Sbjct 1892 AKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVL 1947 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 + HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1948 LDGHLIAFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCN------SHHLY 1999 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2000 RDKHYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2041 >sp|Q66575|POLG_EC12T Genome polyprotein OS=Echovirus 12 (strain Travis) OX=103909 PE=1 SV=4 Length=2193 Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 79/220 (36%), Gaps = 19/220 (9%) Query 498 LDKSAGFPFNKWG--KARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAIS---AKN 552 L SAG+P+ G K + + +P +T + + S AK Sbjct 1843 LTTSAGYPYVAIGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSSEKVAKG 1902 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 ++R + S+ ++ RQ L K+ G I T G ++ + + + Sbjct 1903 KSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVMLDG 1958 Query 613 HLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1959 HLIAFDYSGYDASLSPV--WFACLKLLLEKLGYTHRETNYIDYLCN------SHHLYRDK 2010 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 2011 HYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2049 >sp|Q8V5E0|POL1_BRAV RNA1 polyprotein OS=Blackcurrant reversion association virus OX=65743 PE=3 SV=1 Length=2094 Score = 35.4 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 33/186 (18%), Positives = 66/186 (35%), Gaps = 11/186 (6%) Query 518 SMSYEDQDALFAYTKRNVIPTITQ---MNLKYAISAKNRARTVAGVSICSTMTNRQFHQK 574 +M YE + ++ T I K + R + + + + R+ Sbjct 1559 AMRYEALQRDCFTSVPEMVCIETPKDECLPLRKICIKPKTRLFSILPLEFNLLLRKKFLH 1618 Query 575 LLKSIAATRGA-TVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCD-RAMPNMLRI 632 S+ R +G + + W +L+ + ++ + DY D +L Sbjct 1619 FSSSLQMHRDTLPTQVGVNPYSREWGELLQRL--RAQSSVAINCDYASFDGLLTGQILEK 1676 Query 633 MASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANS 692 + +++ S + + RL N +++ +CG +Y G SG A T NS Sbjct 1677 IGTMI---NKMYIGSEASKIQRL-NLLMSIVNRKSICGARVYEVRAGIPSGCALTVLLNS 1732 Query 693 VFNICQ 698 +FN Sbjct 1733 IFNEFL 1738 >sp|P06210|POLG_POL2L Genome polyprotein OS=Poliovirus type 2 (strain Lansing) OX=12084 PE=1 SV=3 Length=2207 Score = 35.4 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 72/223 (32%), Gaps = 26/223 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRA 554 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1858 LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV 1914 Query 555 -----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 R + S+ ++ R L + G T G ++ + + Sbjct 1915 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVV----TGSAVGCDPDLFWSKIPVL 1970 Query 610 ENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 L +DY D ++ P +L + + + N + Sbjct 1971 MEEKLFAFDYTGYDASLSPA---WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTY 2026 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 C GG SG + T+ NS+ N T + D Sbjct 2027 CV------KGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGID 2063 >sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mis4 PE=1 SV=2 Length=1587 Score = 35.4 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 5/94 (5%) Query 370 ELLVYAADPAMHAASGNLLLDKRTT----CFSVAALTNNVAFQTVKPGNFNKDFYDFAVS 425 L++ + +S N LD + ++ L+ P NFN D F S Sbjct 619 NLVMTVTNDKQAVSSKNAALDLISLIVNKVLALFDLSLFEKHNIPAPTNFN-DIISFIPS 677 Query 426 KGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYN 459 E S V HF+F G+ ++ + Y YN Sbjct 678 ITRLNELSQVSFNHFYFLCKGDISLENILPYNYN 711 >sp|P06209|POLG_POL32 Genome polyprotein OS=Poliovirus type 3 (strain 23127) OX=12087 PE=3 SV=3 Length=2206 Score = 35.4 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 72/223 (32%), Gaps = 26/223 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRA 554 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1857 LSTSAGYPYVTMGKKKRDILNKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV 1913 Query 555 -----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 R + S+ ++ R L + G T G ++ + + Sbjct 1914 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVV----TGSAVGCDPDLFWSKIPVL 1969 Query 610 ENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 L +DY D ++ P +L + + + N + Sbjct 1970 MEEKLFAFDYTGYDASLSPA---WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTY 2025 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 C GG SG + T+ NS+ N T + D Sbjct 2026 CV------KGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGID 2062 >sp|Q12018|CDC53_YEAST Cell division control protein 53 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CDC53 PE=1 SV=1 Length=815 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 69/174 (40%), Gaps = 17/174 (10%) Query 743 NEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE 802 +E Y L+ + IL+ NS Q V K F + N+ F + W + Sbjct 84 SEIYEKLKNYLKNYILN---FKQSNSETFLQFYVKRWKRFTIGAIFLNHAFDYMNRYWVQ 140 Query 803 TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIV---------KTDGT 853 + + G +T+ + + ++ DPS+ + +D + +++ + Sbjct 141 KERSDGKRHIFDVNTLCLMTWKEVMF----DPSKDVLINELLDQVTLGREGQIIQRSNIS 196 Query 854 LMIERFVSLAIDAYPLTKHPNQEYADVFHL-YLQYIRKLHDELTGHMLDMYSVM 906 I+ V+L ID L K Y VF +L+ ++ + + T L+ +SV Sbjct 197 TAIKSLVALGIDPQDLKKLNLNVYIQVFEKPFLKKTQEYYTQYTNDYLEKHSVT 250 >sp|P22055|POLG_CXA21 Genome polyprotein OS=Coxsackievirus A21 (strain Coe) OX=12070 PE=1 SV=3 Length=2206 Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 37/207 (18%), Positives = 70/207 (34%), Gaps = 26/207 (13%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRA 554 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1857 LSTSAGYPYVAMGKKKRDILDKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV 1913 Query 555 -----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 R + S+ ++ R L + G T G ++ + + Sbjct 1914 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVV----TGSAVGCDPDLFWSKIPVL 1969 Query 610 ENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 L +DY D ++ P +L + + + + N + Sbjct 1970 MEEKLFAFDYTGYDASLSPA---WFEALKMVLEKIGFGNRVD-YIDYLNHSHHLYKNKTY 2025 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFN 695 C GG SG + T+ NS+ N Sbjct 2026 CV------KGGMPSGCSGTSIFNSMIN 2046 >sp|P36290|POLG_CXA24 Genome polyprotein OS=Coxsackievirus A24 (strain EH24/70) OX=36404 PE=3 SV=3 Length=2214 Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 72/223 (32%), Gaps = 26/223 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRA 554 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1865 LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQRLLD-TYGINLPLVTYV--KDELRSKTKV 1921 Query 555 -----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 R + S+ ++ R L + G T G ++ + + Sbjct 1922 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVV----TGSAVGCDPDLFWSKIPVL 1977 Query 610 ENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 L +DY D ++ P +L + + + N + Sbjct 1978 MEEKLFAFDYTGYDASLSPA---WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTY 2033 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 C GG SG + T+ NS+ N T + D Sbjct 2034 CV------KGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGID 2070 >sp|P03600|POL1_CPMVS RNA1 polyprotein OS=Cowpea mosaic virus (strain SB) OX=928299 PE=1 SV=1 Length=1866 Score = 35.0 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 26/174 (15%), Positives = 60/174 (34%), Gaps = 8/174 (5%) Query 551 KNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVE 610 K R T+ + + + R+F + +A + +G + + W + + + Sbjct 1371 KTRCFTILPMEY-NLVVRRKFLNFVRFIMANRHRLSCQVGINPYSMEWSRLAARMKE--K 1427 Query 611 NPHLMGWDYPKCDRAMP-NMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMC 669 ++ DY D + ++ ++AS++ + C N S + +C Sbjct 1428 GNDVLCCDYSSFDGLLSKQVMDVIASMI----NELCGGEDQLKNARRNLLMACCSRLAIC 1483 Query 670 GGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL 723 +++ G SG T NS+FN + ++ + L Sbjct 1484 KNTVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKLMREQQAPELMVQSFDKL 1537 >sp|Q5ZM60|CCPG1_CHICK Cell cycle progression protein 1 OS=Gallus gallus OX=9031 GN=CCPG1 PE=2 SV=1 Length=801 Score = 35.0 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 24/117 (21%), Positives = 42/117 (36%), Gaps = 12/117 (10%) Query 689 YANSVFNICQAVTANVNALL----------STDGNKIADKYVRNLQHRLYECLYRNRDVD 738 +++SV + + +L + NK A + R H LYE L ++ Sbjct 525 FSDSVKSTFRHFKDTTKTILDEKEKKPNEKKYEANKKARTFYRE--HNLYENLKQSHYRR 582 Query 739 TDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMS 795 + +F R HF+ D+ C N S+ +K + N F+S Sbjct 583 PNVPKDFRDGRRHHFTAFEKDTDSQKCLNDPLCSRKHQFDLKGCSGIFECANQEFVS 639 >sp|B1KEK5|PYRC_SHEWM Dihydroorotase OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=pyrC PE=3 SV=1 Length=344 Score = 34.6 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 69/178 (39%), Gaps = 23/178 (13%) Query 443 AQDGNAAISDYDYYRYNLPTMCDIRQLLFVV-EVVDKYFDCYDGGCINANQVIVNNLDKS 501 + +AA+ D TM +I LL V EV + + D +D + I NL + Sbjct 105 TTNSDAAVKGLDALFPIFETMAEIGMLLLVHGEVTESHIDIFDREAL----FIERNLSRI 160 Query 502 AGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV- 560 + + + ++ ++ ++ ++ NV TIT +L + V GV Sbjct 161 ----VDAFPQLKVVFEHITTKEAAEFVTSASDNVAATITPQHLLLNRND----LLVGGVR 212 Query 561 --SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMG 616 + C + R HQ+ L++ AT G+SKF+ G + + G Sbjct 213 PHNFCLPVLKRNIHQEALRAAVAT-------GSSKFFLGTDSAPHEKHRKESACGCAG 263 >sp|P23008|POLG_HRV1A Genome polyprotein OS=Human rhinovirus 1A OX=12134 PE=1 SV=3 Length=2157 Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 36/204 (18%), Positives = 69/204 (34%), Gaps = 21/204 (10%) Query 498 LDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKR--NVIPTITQMN---LKYAISAKN 552 L+ SAGFP+ G + + +D L + +P IT + K + Sbjct 1809 LNTSAGFPYVTMGIKKRDLINNKTKDISRLKEALDKYGVDLPMITFLKDELRKKEKISTG 1868 Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENP 612 + R + SI T+ R L G V+ S + ++ Sbjct 1869 KTRVIEASSINDTILFRTTFGNLFSKFHLNPG---VVTGSAVGCDPETFWSKIPVMLDGD 1925 Query 613 HLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 +M +DY D ++ P + + ++ +N ++ + Sbjct 1926 CIMAFDYTNYDGSIHPVWFQALKKVL------------ENLSFQSNLIDRLCYSKHLFKS 1973 Query 672 SLYVKPGGTSSGDATTAYANSVFN 695 + Y GG SG + T+ N++ N Sbjct 1974 TYYEVAGGVPSGCSGTSIFNTMIN 1997 >sp|P03300|POLG_POL1M Genome polyprotein OS=Poliovirus type 1 (strain Mahoney) OX=12081 PE=1 SV=3 Length=2209 Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 40/223 (18%), Positives = 70/223 (31%), Gaps = 26/223 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRA 554 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1860 LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLD-TYGINLPLVTYV--KDELRSKTKV 1916 Query 555 -----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 R + S+ ++ R L + G VI S + Sbjct 1917 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG---VITGSAVGCDPDLFWS-KIPVL 1972 Query 610 ENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 L +DY D ++ P +L + + + N + Sbjct 1973 MEEKLFAFDYTGYDASLSPA---WFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTY 2028 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 C GG SG + T+ NS+ N T + D Sbjct 2029 CV------KGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGID 2065 >sp|P03301|POLG_POL1S Genome polyprotein OS=Poliovirus type 1 (strain Sabin) OX=12082 PE=1 SV=3 Length=2209 Score = 34.6 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 40/223 (18%), Positives = 70/223 (31%), Gaps = 26/223 (12%) Query 498 LDKSAGFPFNKWGKAR---LYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRA 554 L SAG+P+ GK + L + ++ L T +P +T + K + +K + Sbjct 1860 LSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLD-TYGINLPLVTYV--KDELRSKTKV 1916 Query 555 -----RTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 R + S+ ++ R L + G VI S + Sbjct 1917 EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG---VITGSAVGCDPDLFWS-KIPVL 1972 Query 610 ENPHLMGWDYPKCDRAM-PNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 L +DY D ++ P +L + + + N + Sbjct 1973 MEEKLFAFDYTGYDASLSPA---WFEALEMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTY 2028 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 C GG SG + T+ NS+ N T + D Sbjct 2029 CV------KGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGID 2065 >sp|Q86887|POLG_CXB4E Genome polyprotein OS=Coxsackievirus B4 (strain E2) OX=103905 PE=3 SV=3 Length=2183 Score = 34.6 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 14/163 (9%) Query 550 AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 AK ++R + S+ ++ RQ L K+ G I T G ++ + + Sbjct 1890 AKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDLFWSKIPVM 1945 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 + HL +DY D ++ + A L +L K ++ L N S + Sbjct 1946 LDGHLRAFDYSGYDASLSPV--WFACLKLLLEKLGYSHKETNYIDYLCN------SHHLY 1997 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T D Sbjct 1998 RDKHYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMFKVYKGID 2039 >sp|O91734|POLG_EC01F Genome polyprotein OS=Echovirus 1 (strain Human/Egypt/Farouk/1951) OX=103908 PE=1 SV=4 Length=2184 Score = 34.6 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 14/163 (9%) Query 550 AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 AK ++R + S+ ++ RQ L K+ G I T G ++ + + Sbjct 1891 AKGKSRLIEASSLNDSVAMRQTFGNLYKTFHLNPG----IVTGSAVGCDPDVFWSKIPVM 1946 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 + HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1947 LDGHLIAFDYSGYDASLSPV--WFACLKLLLEKLGYTNKETNYIDYLCN------SHHLY 1998 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 1999 RDKHYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2040 >sp|Q9DSN9|POLN_ABPVR Replicase polyprotein OS=Acute bee paralysis virus (strain Rothamsted) OX=1217067 GN=ORF1 PE=4 SV=1 Length=1906 Score = 34.6 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 78/247 (32%), Gaps = 34/247 (14%) Query 553 RARTVAGVSICSTMTNRQFHQKLLKSIAATRGAT-VVIGTSKFYGGWHNMLKTVYSDVEN 611 + R + + ++T R ++ + + R V IGT+ + W+ ++ + Sbjct 1580 KTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKL--KTMG 1637 Query 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGG 671 P ++ D+ D ++ + + + + + + L V + +CG Sbjct 1638 PKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLL---MDVYNSTHICGD 1694 Query 672 SLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL 731 S+Y+ SG+ T N N ++E Sbjct 1695 SVYMMTHSQPSGNPATTPLNCFINSM-------------------------GLRMVFELC 1729 Query 732 YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNN 791 + KH S++ DD V+ F+ + + +I L + Sbjct 1730 SKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGF--- 1786 Query 792 VFMSEAK 798 + E K Sbjct 1787 TYTDELK 1793 >sp|Q75BF1|SET5_EREGS Histone-lysine N-methyltransferase SET5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=SET5 PE=3 SV=2 Length=488 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 21/89 (24%), Positives = 38/89 (43%), Gaps = 5/89 (6%) Query 844 VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLH-DELTGHMLDM 902 VD M E L DA+PL K EY F +L+Y+ K + +++ G + + Sbjct 283 VDLTANAQSVCMWEEGYGLFCDAFPLAK---DEYDLDFEKFLRYVGKFNLNQVNGQIYML 339 Query 903 YSVMLTNDNTSRYWE-PEFYEAMYTPHTV 930 S + + + Y+E + +Y + Sbjct 340 LSHLNHSCEPNIYYELEGHHINVYARKEI 368 >sp|P08292|POLG_CXB4J Genome polyprotein OS=Coxsackievirus B4 (strain JVB / Benschoten / New York/51) OX=103906 PE=1 SV=4 Length=2183 Score = 34.2 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 14/163 (9%) Query 550 AKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDV 609 AK ++R + S+ ++ RQ L K+ G I T G ++ + + Sbjct 1890 AKGKSRLIEASSLNDSVAMRQTFGNLYKAFHLNPG----IVTGSAVGCDPDVFWSKIPVM 1945 Query 610 ENPHLMGWDYPKCDRAMPNMLRIMASL-VLARKHTTCCSLSHRFYRLANECAQVLSEMVM 668 + HL+ +DY D ++ + A L +L K ++ L N S + Sbjct 1946 LDGHLIAFDYSGYDASLSPV--WFACLKLLLEKLGYTHKETNYIDYLCN------SHHLY 1997 Query 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTD 711 +V GG SG + T+ NS+ N T + D Sbjct 1998 RDKHYFV-RGGMPSGCSGTSIFNSMINNIIIRTLMLKVYKGID 2039 Lambda K H a alpha 0.318 0.136 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0415 0.140 1.90 42.6 43.6 Effective search space used: 107377657200 Database: uniprot_sprot.fasta Posted date: Apr 3, 2024 12:05 PM Number of letters in database: 206,678,396 Number of sequences in database: 571,282 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40