PSIBLAST 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: uniprot_sprot.fasta 570,830 sequences; 206,533,160 total letters Results from round 1 Query= YP_009725299.1 nsp3 [Severe acute respiratory syndrome coronavirus 2] Length=1945 Score E Sequences producing significant alignments: (Bits) Value sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp... 4035 0.0 sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 4024 0.0 sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi... 3066 0.0 sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 3056 0.0 sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R... 3055 0.0 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 3044 0.0 sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H... 3030 0.0 sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2... 3023 0.0 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 3022 0.0 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 3015 0.0 sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H... 710 0.0 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 709 0.0 sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H... 684 0.0 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 681 0.0 sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi... 678 0.0 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 678 0.0 sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus... 508 1e-145 sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru... 508 1e-145 sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru... 507 2e-145 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 508 2e-145 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 506 5e-145 sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus... 506 6e-145 sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 506 6e-145 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 505 1e-144 sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus... 500 3e-143 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 499 8e-143 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 481 1e-136 sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru... 480 1e-136 sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus... 478 6e-136 sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru... 478 6e-136 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 478 7e-136 sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus... 477 1e-135 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 477 1e-135 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 477 1e-135 sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus... 475 4e-135 sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus... 475 5e-135 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 475 8e-135 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 474 2e-134 sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H... 404 2e-112 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 404 3e-112 sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1... 402 7e-112 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 402 1e-111 sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5... 205 2e-51 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 205 3e-51 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 200 7e-50 sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus... 200 8e-50 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 181 6e-44 sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ... 180 8e-44 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 176 1e-42 sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus... 176 2e-42 sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious ... 167 7e-40 sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious b... 167 7e-40 sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 167 8e-40 sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 167 8e-40 sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 162 3e-38 sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious b... 161 6e-38 sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss... 160 1e-37 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 160 1e-37 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 153 1e-35 sp|Q8ZXT3|Y1111_PYRAE Uncharacterized protein PAE1111 OS=Pyrobacu... 72.8 5e-13 sp|Q4J9D2|Y1252_SULAC Uncharacterized protein Saci_1252 OS=Sulfol... 72.4 7e-13 sp|Q97UU4|Y2899_SACS2 Uncharacterized protein SSO2899 OS=Saccharo... 71.6 1e-12 sp|Q9WYX8|Y508_THEMA Uncharacterized protein TM_0508 OS=Thermotog... 76.3 2e-12 sp|Q96XY5|Y2383_SULTO Uncharacterized protein STK_23830 OS=Sulfur... 65.1 2e-10 sp|P0C6F3|R1A_BEV Replicase polyprotein 1a OS=Berne virus OX=1115... 65.5 6e-09 sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11... 65.5 7e-09 sp|Q8CAS9|PARP9_MOUSE Protein mono-ADP-ribosyltransferase PARP9 O... 63.5 2e-08 sp|P36327|POLN_EEVV3 Polyprotein P1234 OS=Venezuelan equine encep... 63.2 3e-08 sp|P27282|POLN_EEVVT Polyprotein P1234 OS=Venezuelan equine encep... 62.4 5e-08 sp|P36328|POLN_EEVVP Polyprotein P1234 OS=Venezuelan equine encep... 62.4 5e-08 sp|A7MG20|YMDB_CROS8 O-acetyl-ADP-ribose deacetylase OS=Cronobact... 58.2 6e-08 sp|E1SDF1|YMDB1_PANVC O-acetyl-ADP-ribose deacetylase 1 OS=Pantoe... 56.6 2e-07 sp|A8AI35|YMDB_CITK8 O-acetyl-ADP-ribose deacetylase OS=Citrobact... 56.6 2e-07 sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobact... 56.2 3e-07 sp|P0A8D6|YMDB_ECOLI O-acetyl-ADP-ribose deacetylase OS=Escherich... 55.8 3e-07 sp|P0A8D7|YMDB_ECOL6 O-acetyl-ADP-ribose deacetylase OS=Escherich... 55.8 3e-07 sp|P0A8D8|YMDB_ECO57 O-acetyl-ADP-ribose deacetylase OS=Escherich... 55.8 3e-07 sp|Q8V294|POLN_EEVVC Polyprotein P1234 OS=Venezuelan equine encep... 59.3 5e-07 sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonell... 54.3 1e-06 sp|Q460N5|PAR14_HUMAN Protein mono-ADP-ribosyltransferase PARP14 ... 57.4 2e-06 sp|A4W960|YMDB_ENT38 O-acetyl-ADP-ribose deacetylase OS=Enterobac... 53.9 2e-06 sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherich... 53.9 2e-06 sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonell... 53.5 2e-06 sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonell... 53.5 2e-06 sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiell... 53.1 2e-06 sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiell... 53.1 2e-06 sp|Q0T5Z6|YMDB_SHIF8 O-acetyl-ADP-ribose deacetylase OS=Shigella ... 53.1 3e-06 sp|Q9WJC7|POLN_EEVVM Polyprotein P1234 OS=Venezuelan equine encep... 56.6 3e-06 sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonell... 53.1 3e-06 sp|Q32E73|YMDB_SHIDS O-acetyl-ADP-ribose deacetylase OS=Shigella ... 52.4 5e-06 sp|D5CE05|YMDB_ENTCC O-acetyl-ADP-ribose deacetylase OS=Enterobac... 52.0 7e-06 sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=... 52.0 7e-06 sp|Q72M93|Y3295_LEPIC Macro domain-containing protein LIC_13295 O... 52.0 7e-06 sp|B5RBF3|YMDB_SALG2 O-acetyl-ADP-ribose deacetylase OS=Salmonell... 51.6 1e-05 sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 OX=3... 53.5 3e-05 sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX... 53.5 3e-05 sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobact... 50.1 3e-05 sp|Q2EMV9|PAR14_MOUSE Protein mono-ADP-ribosyltransferase PARP14 ... 52.8 5e-05 sp|Q8Q0F9|Y177_METMA Macro domain-containing protein MM_0177 OS=M... 49.3 6e-05 sp|Q8RHQ2|Y1951_FUSNN Uncharacterized protein FN1951 OS=Fusobacte... 48.1 1e-04 sp|Q8IXQ6|PARP9_HUMAN Protein mono-ADP-ribosyltransferase PARP9 O... 51.2 1e-04 sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=... 47.8 2e-04 sp|Q8BCR0|POLN_RUBVN Non-structural polyprotein p200 OS=Rubella v... 50.8 2e-04 sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=... 48.1 2e-04 sp|Q8RB30|Y995_CALS4 Macro domain-containing protein TTE0995 OS=C... 47.4 2e-04 sp|E1PL40|YMDB2_PANVC O-acetyl-ADP-ribose deacetylase 2 OS=Pantoe... 47.4 2e-04 sp|P13889|POLN_RUBVT Non-structural polyprotein p200 OS=Rubella v... 49.7 4e-04 sp|Q8Y2K1|Y334_RALN1 Macro domain-containing protein RSc0334 OS=R... 46.2 6e-04 sp|O40955|POLN_RUBVR Non-structural polyprotein p200 OS=Rubella v... 48.5 7e-04 sp|Q9EYI6|Y189_STRNO Macro domain-containing protein in sno 5'reg... 45.4 0.001 sp|Q93SX7|Y189_ACISE Macro domain-containing protein OS=Acinetoba... 45.1 0.002 sp|Q97AU0|Y719_THEVO Uncharacterized protein TV0719 OS=Thermoplas... 45.1 0.002 sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=C... 44.7 0.002 sp|Q985D2|Y7730_RHILO Macro domain-containing protein mll7730 OS=... 44.7 0.002 sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=... 43.9 0.003 sp|O59182|Y1513_PYRHO Uncharacterized protein PH1513 OS=Pyrococcu... 43.5 0.006 sp|P27283|POLN_SINDO Polyprotein P1234 OS=Sindbis virus subtype O... 45.4 0.007 sp|Q9V0Y3|Y656_PYRAB Uncharacterized protein PYRAB06560 OS=Pyroco... 43.1 0.007 sp|Q99IE7|POLN_RUBVO Non-structural polyprotein p200 OS=Rubella v... 45.4 0.007 sp|Q99IE5|POLN_RUBVV Non-structural polyprotein p200 OS=Rubella v... 45.4 0.007 sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=... 42.7 0.008 sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=... 42.7 0.009 sp|Q6X2U2|POLN_RUBVC Non-structural polyprotein p200 OS=Rubella v... 45.1 0.009 sp|Q6X2U4|POLN_RUBVB Non-structural polyprotein p200 OS=Rubella v... 45.1 0.010 sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermopla... 42.7 0.011 sp|Q6PAV8|MACD2_XENLA ADP-ribose glycohydrolase MACROD2 OS=Xenopu... 43.5 0.020 sp|Q9J6K9|POLN_RUBVD Non-structural polyprotein p200 OS=Rubella v... 43.9 0.021 sp|Q86500|POLN_RUBVM Non-structural polyprotein p200 OS=Rubella v... 43.9 0.022 sp|Q7MTZ7|MACRO_PORGI Macro domain-containing protein PG1779 OS=P... 41.2 0.028 sp|Q86924|POLN_AURAV Polyprotein P1234 OS=Aura virus OX=44158 PE=... 43.5 0.028 sp|Q9ZBG3|Y6450_STRCO Macro domain-containing protein SCO6450 OS=... 41.2 0.031 sp|Q8K4G6|MACD1_RAT ADP-ribose glycohydrolase MACROD1 (Fragment) ... 42.0 0.035 sp|P03317|POLN_SINDV Polyprotein P1234 OS=Sindbis virus OX=11034 ... 42.7 0.054 sp|Q9BQ69|MACD1_HUMAN ADP-ribose glycohydrolase MACROD1 OS=Homo s... 41.6 0.054 sp|O28751|Y1521_ARCFU ADP-ribose glycohydrolase AF_1521 OS=Archae... 40.4 0.071 sp|Q44020|YGB2_CUPNE Macro domain-containing protein in gbd 3'reg... 40.0 0.072 sp|Q306W6|POLN_EEEV1 Polyprotein P1234 OS=Eastern equine encephal... 42.0 0.074 sp|Q9YBE9|Y1648_AERPE Uncharacterized protein APE_1648.1 OS=Aerop... 40.0 0.087 sp|P13896|POLN_WEEV Polyprotein P1234 OS=Western equine encephali... 41.2 0.13 sp|Q2KHU5|MACD1_BOVIN ADP-ribose glycohydrolase MACROD1 OS=Bos ta... 39.7 0.27 sp|Q922B1|MACD1_MOUSE ADP-ribose glycohydrolase MACROD1 OS=Mus mu... 39.3 0.30 sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian hep... 40.0 0.30 sp|Q306W8|POLN_EEEV8 Polyprotein P1234 OS=Eastern equine encephal... 40.0 0.30 sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=P... 38.1 0.36 sp|A1Z1Q3|MACD2_HUMAN ADP-ribose glycohydrolase MACROD2 OS=Homo s... 39.3 0.37 sp|Q3UYG8|MACD2_MOUSE ADP-ribose glycohydrolase MACROD2 OS=Mus mu... 39.3 0.38 sp|Q9KHE2|Y189_STRGR Macro domain-containing protein in non 5'reg... 36.6 0.97 sp|Q8Y3S3|Y2759_LISMO Macro domain-containing protein lmo2759 OS=... 36.6 1.0 sp|Q7TZB9|Y1934_MYCBO Uncharacterized protein Mb1934c OS=Mycobact... 37.7 1.0 sp|P9WK29|Y1899_MYCTU Uncharacterized protein Rv1899c OS=Mycobact... 37.7 1.0 sp|P9WK28|Y1899_MYCTO Uncharacterized protein MT1950 OS=Mycobacte... 37.7 1.1 sp|Q4QXJ8|POLN_EEEVF Polyprotein P1234 OS=Eastern equine encephal... 38.1 1.1 sp|Q926Y8|Y2902_LISIN Macro domain-containing protein lin2902 OS=... 36.6 1.2 sp|Q71W03|Y2748_LISMF Macro domain-containing protein LMOf2365_27... 36.2 1.3 sp|A0A0D2UG83|H2AY_CAPO3 Histone macroH2A1.1 OS=Capsaspora owczar... 37.4 1.3 sp|B4S3G9|PDXJ_PROA2 Pyridoxine 5'-phosphate synthase OS=Prosthec... 36.6 1.6 sp|P26627|R1AB_CVMJD Replicase polyprotein 1ab (Fragment) OS=Muri... 37.4 1.7 sp|B0C385|RPOC2_ACAM1 DNA-directed RNA polymerase subunit beta' O... 37.0 2.5 sp|Q5JER1|Y1890_THEKO Uncharacterized protein TK1890 OS=Thermococ... 34.7 4.3 sp|Q8U0P9|Y1536_PYRFU Uncharacterized protein PF1536 OS=Pyrococcu... 35.0 4.3 sp|Q9RS39|Y2288_DEIRA Macro domain-containing protein DR_2288 OS=... 33.9 6.9 sp|P24886|NU4LM_CAEEL NADH-ubiquinone oxidoreductase chain 4L OS=... 32.0 8.2 >sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1 Length=4405 Score = 4035 bits (10464), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1945/1945 (100%), Positives = 1945/1945 (100%), Gaps = 0/1945 (0%) Query 1 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA 60 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA Sbjct 819 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA 878 Query 61 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 120 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE Sbjct 879 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 938 Query 121 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 180 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ Sbjct 939 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 998 Query 181 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 240 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV Sbjct 999 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 1058 Query 241 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 300 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV Sbjct 1059 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 1118 Query 301 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF 360 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF Sbjct 1119 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF 1178 Query 361 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE 420 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE Sbjct 1179 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE 1238 Query 421 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA 480 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA Sbjct 1239 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA 1298 Query 481 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS 540 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS Sbjct 1299 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS 1358 Query 541 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY 600 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY Sbjct 1359 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY 1418 Query 601 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS 660 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS Sbjct 1419 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS 1478 Query 661 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT 720 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT Sbjct 1479 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT 1538 Query 721 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY 780 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY Sbjct 1539 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY 1598 Query 781 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY 840 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY Sbjct 1599 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY 1658 Query 841 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC 900 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC Sbjct 1659 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC 1718 Query 901 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ 960 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ Sbjct 1719 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ 1778 Query 961 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH 1020 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH Sbjct 1779 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH 1838 Query 1021 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN 1080 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN Sbjct 1839 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN 1898 Query 1081 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT 1140 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT Sbjct 1899 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT 1958 Query 1141 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP 1200 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP Sbjct 1959 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP 2018 Query 1201 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK 1260 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK Sbjct 2019 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK 2078 Query 1261 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI 1320 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI Sbjct 2079 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI 2138 Query 1321 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI 1380 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI Sbjct 2139 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI 2198 Query 1381 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG 1440 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG Sbjct 2199 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG 2258 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL 1500 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL Sbjct 2259 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL 2318 Query 1501 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 1560 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS Sbjct 2319 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 2378 Query 1561 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 1620 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA Sbjct 2379 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 2438 Query 1621 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 1680 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN Sbjct 2439 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 2498 Query 1681 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS 1740 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS Sbjct 2499 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS 2558 Query 1741 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA 1800 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA Sbjct 2559 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA 2618 Query 1801 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN 1860 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN Sbjct 2619 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN 2678 Query 1861 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL 1920 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL Sbjct 2679 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL 2738 Query 1921 PFKLTCATTRQVVNVVTTKIALKGG 1945 PFKLTCATTRQVVNVVTTKIALKGG Sbjct 2739 PFKLTCATTRQVVNVVTTKIALKGG 2763 >sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 4024 bits (10436), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1945/1945 (100%), Positives = 1945/1945 (100%), Gaps = 0/1945 (0%) Query 1 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA 60 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA Sbjct 819 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA 878 Query 61 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 120 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE Sbjct 879 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 938 Query 121 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 180 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ Sbjct 939 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 998 Query 181 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 240 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV Sbjct 999 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 1058 Query 241 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 300 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV Sbjct 1059 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 1118 Query 301 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF 360 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF Sbjct 1119 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF 1178 Query 361 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE 420 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE Sbjct 1179 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE 1238 Query 421 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA 480 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA Sbjct 1239 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA 1298 Query 481 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS 540 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS Sbjct 1299 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS 1358 Query 541 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY 600 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY Sbjct 1359 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY 1418 Query 601 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS 660 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS Sbjct 1419 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS 1478 Query 661 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT 720 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT Sbjct 1479 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT 1538 Query 721 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY 780 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY Sbjct 1539 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY 1598 Query 781 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY 840 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY Sbjct 1599 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY 1658 Query 841 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC 900 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC Sbjct 1659 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC 1718 Query 901 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ 960 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ Sbjct 1719 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ 1778 Query 961 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH 1020 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH Sbjct 1779 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH 1838 Query 1021 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN 1080 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN Sbjct 1839 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN 1898 Query 1081 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT 1140 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT Sbjct 1899 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT 1958 Query 1141 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP 1200 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP Sbjct 1959 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP 2018 Query 1201 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK 1260 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK Sbjct 2019 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK 2078 Query 1261 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI 1320 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI Sbjct 2079 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI 2138 Query 1321 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI 1380 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI Sbjct 2139 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI 2198 Query 1381 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG 1440 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG Sbjct 2199 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG 2258 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL 1500 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL Sbjct 2259 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL 2318 Query 1501 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 1560 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS Sbjct 2319 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 2378 Query 1561 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 1620 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA Sbjct 2379 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 2438 Query 1621 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 1680 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN Sbjct 2439 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 2498 Query 1681 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS 1740 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS Sbjct 2499 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS 2558 Query 1741 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA 1800 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA Sbjct 2559 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA 2618 Query 1801 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN 1860 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN Sbjct 2619 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN 2678 Query 1861 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL 1920 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL Sbjct 2679 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL 2738 Query 1921 PFKLTCATTRQVVNVVTTKIALKGG 1945 PFKLTCATTRQVVNVVTTKIALKGG Sbjct 2739 PFKLTCATTRQVVNVVTTKIALKGG 2763 >sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=1a PE=1 SV=1 Length=4382 Score = 3066 bits (7949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1480/1952 (76%), Positives = 1682/1952 (86%), Gaps = 37/1952 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD++GE +S MYCSFYPPDE+EE+ Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 938 Query 120 EEEFEPSTQ-YEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSED 178 EEE T +EYGTEDDYQG PLEFGA++ ++ EEE+EEDWLDD ++Q+ Sbjct 939 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQS--------- 989 Query 179 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTV 238 E++P+ E VN F+GYLKLTDNV IK DIV+EA+ P V Sbjct 990 ----------EIEPEPEPT-----PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMV 1034 Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNAAN++LKHGGGVAGALNKATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK CLH Sbjct 1035 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLH 1094 Query 299 VVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLA 358 VVGPN+N GEDIQLLK+AYENFN ++LLAPLLSAGIFGA P+ SL+VCV TVRT VY+A Sbjct 1095 VVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIA 1154 Query 359 VFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESK---PSVEQRKQDDK-KI 414 V DK LY+++V +L+ + E PK+E P +SK SV Q+ D K KI Sbjct 1155 VNDKALYEQVVMDYLDNLKPR------VEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPKI 1208 Query 415 KACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQ 474 KAC++EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPY+VGDV+ Sbjct 1209 KACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVIT 1268 Query 475 EGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSA 534 G +T VVIP+KKAGGTTEML++AL+KVP D YITTYPGQG GYT+EEAKT LKKCKSA Sbjct 1269 SGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSA 1328 Query 535 FYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQ 594 FY+LPS N K+EILGTVSWNLREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIKIQ Sbjct 1329 FYVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQ 1388 Query 595 EGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVP 654 EG+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK P Sbjct 1389 EGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAP 1448 Query 655 ATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGD 714 A VSVSSPDAVT YNGYLTSSSKT EEHF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRGD Sbjct 1449 AVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGD 1508 Query 715 KSVYYT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYG 773 K VY+T +P FHLDGEV++ D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYG Sbjct 1509 KIVYHTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYG 1568 Query 774 QQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALN 833 QQFGPTYLDGADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALN Sbjct 1569 QQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALN 1628 Query 834 HTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFC 893 HTKKWK+PQV GLTSIKWADNNCYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFC Sbjct 1629 HTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFC 1688 Query 894 ALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYM 953 ALILAY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYM Sbjct 1689 ALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYM 1748 Query 954 GTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNY 1013 GTLSY+ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNY Sbjct 1749 GTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNY 1808 Query 1014 QCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTE 1073 QCGHY HIT+KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TE Sbjct 1809 QCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTE 1868 Query 1074 IDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPA 1133 I+PKLD YYKKDN+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+ KPA Sbjct 1869 IEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPA 1928 Query 1134 SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIR 1193 SREL VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+R Sbjct 1929 SRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLR 1988 Query 1194 CLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEV 1253 CLWSTKPV+TSNSF+VL ED QGMDNLACE +P SEEVVENPTIQK+V+EC+VKTTEV Sbjct 1989 CLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEV 2048 Query 1254 VGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVN 1313 VG++ILKP++ +K+T+E+GH DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+N Sbjct 2049 VGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAIN 2108 Query 1314 SVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIK 1373 SVPW I Y KPFL + TT+N R RV NYMPY FTLL QLCTFT+STNSRI+ Sbjct 2109 SVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIR 2168 Query 1374 ASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALG 1433 AS+PTTIAKN+VKSV K CL+A NY+KSP FSKL I +W LLLS+CLGSLI TAA G Sbjct 2169 ASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG 2228 Query 1434 VLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITI 1493 VL+SN G PSYC G RE YLNS+NVT +C GS PCS+CLSGLDSLD+YP+LETIQ+TI Sbjct 2229 VLLSNFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTI 2288 Query 1494 SSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINL 1553 SS+K DLT GL AEW LAY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++ Sbjct 2289 SSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISI 2348 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 VQMAP+SAMVRMYIFFASFYY+WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++ Sbjct 2349 VQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMK 2408 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 RSFYVYANGG+GFCK HNWNC+NCDTFC GSTFISDEVARDLSLQFKRPINPTDQSSYIV Sbjct 2409 RSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2468 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 DSV VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+E Sbjct 2469 DSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDE 2528 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 S++KSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK Sbjct 2529 SASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA 2588 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCN 1853 LVATA +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCN Sbjct 2589 LVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCN 2648 Query 1854 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 1913 N+MLTYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRS Sbjct 2649 NFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRS 2708 Query 1914 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 AAKKNN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2709 AAKKNNIPFRLTCATTRQVVNVITTKISLKGG 2740 >sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 3056 bits (7924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1480/1952 (76%), Positives = 1682/1952 (86%), Gaps = 37/1952 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD++GE +S MYCSFYPPDE+EE+ Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 938 Query 120 EEEFEPSTQ-YEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSED 178 EEE T +EYGTEDDYQG PLEFGA++ ++ EEE+EEDWLDD ++Q+ Sbjct 939 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQS--------- 989 Query 179 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTV 238 E++P+ E VN F+GYLKLTDNV IK DIV+EA+ P V Sbjct 990 ----------EIEPEPEPT-----PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMV 1034 Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNAAN++LKHGGGVAGALNKATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK CLH Sbjct 1035 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLH 1094 Query 299 VVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLA 358 VVGPN+N GEDIQLLK+AYENFN ++LLAPLLSAGIFGA P+ SL+VCV TVRT VY+A Sbjct 1095 VVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIA 1154 Query 359 VFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESK---PSVEQRKQDDK-KI 414 V DK LY+++V +L+ + E PK+E P +SK SV Q+ D K KI Sbjct 1155 VNDKALYEQVVMDYLDNLKPR------VEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPKI 1208 Query 415 KACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQ 474 KAC++EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPY+VGDV+ Sbjct 1209 KACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVIT 1268 Query 475 EGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSA 534 G +T VVIP+KKAGGTTEML++AL+KVP D YITTYPGQG GYT+EEAKT LKKCKSA Sbjct 1269 SGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSA 1328 Query 535 FYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQ 594 FY+LPS N K+EILGTVSWNLREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIKIQ Sbjct 1329 FYVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQ 1388 Query 595 EGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVP 654 EG+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK P Sbjct 1389 EGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAP 1448 Query 655 ATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGD 714 A VSVSSPDAVT YNGYLTSSSKT EEHF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRGD Sbjct 1449 AVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGD 1508 Query 715 KSVYYT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYG 773 K VY+T +P FHLDGEV++ D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYG Sbjct 1509 KIVYHTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYG 1568 Query 774 QQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALN 833 QQFGPTYLDGADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALN Sbjct 1569 QQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALN 1628 Query 834 HTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFC 893 HTKKWK+PQV GLTSIKWADNNCYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFC Sbjct 1629 HTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFC 1688 Query 894 ALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYM 953 ALILAY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYM Sbjct 1689 ALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYM 1748 Query 954 GTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNY 1013 GTLSY+ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNY Sbjct 1749 GTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNY 1808 Query 1014 QCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTE 1073 QCGHY HIT+KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TE Sbjct 1809 QCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTE 1868 Query 1074 IDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPA 1133 I+PKLD YYKKDN+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+ KPA Sbjct 1869 IEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPA 1928 Query 1134 SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIR 1193 SREL VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+R Sbjct 1929 SRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLR 1988 Query 1194 CLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEV 1253 CLWSTKPV+TSNSF+VL ED QGMDNLACE +P SEEVVENPTIQK+V+EC+VKTTEV Sbjct 1989 CLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEV 2048 Query 1254 VGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVN 1313 VG++ILKP++ +K+T+E+GH DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+N Sbjct 2049 VGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAIN 2108 Query 1314 SVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIK 1373 SVPW I Y KPFL + TT+N R RV NYMPY FTLL QLCTFT+STNSRI+ Sbjct 2109 SVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIR 2168 Query 1374 ASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALG 1433 AS+PTTIAKN+VKSV K CL+A NY+KSP FSKL I +W LLLS+CLGSLI TAA G Sbjct 2169 ASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFG 2228 Query 1434 VLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITI 1493 VL+SN G PSYC G RE YLNS+NVT +C GS PCS+CLSGLDSLD+YP+LETIQ+TI Sbjct 2229 VLLSNFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTI 2288 Query 1494 SSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINL 1553 SS+K DLT GL AEW LAY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++ Sbjct 2289 SSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISI 2348 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 VQMAP+SAMVRMYIFFASFYY+WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++ Sbjct 2349 VQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMK 2408 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 RSFYVYANGG+GFCK HNWNC+NCDTFC GSTFISDEVARDLSLQFKRPINPTDQSSYIV Sbjct 2409 RSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2468 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 DSV VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+E Sbjct 2469 DSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDE 2528 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 S++KSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK Sbjct 2529 SASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA 2588 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCN 1853 LVATA +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCN Sbjct 2589 LVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCN 2648 Query 1854 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 1913 N+MLTYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRS Sbjct 2649 NFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRS 2708 Query 1914 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 AAKKNN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2709 AAKKNNIPFRLTCATTRQVVNVITTKISLKGG 2740 >sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus Rp3/2004 OX=349344 GN=1a PE=3 SV=1 Length=4380 Score = 3055 bits (7920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1464/1953 (75%), Positives = 1677/1953 (86%), Gaps = 41/1953 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 APTK VTFG+DTV+EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APTKGVTFGEDTVVEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD+SGE KL+S MYCSFYPPDE+E+ + E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 120 EEEFEP--STQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSE 177 EEE + ++EYGTE+DY+G PLEFGA++ +Q EE++EEDWLDD + + Sbjct 939 EEEEVSERTCEHEYGTEEDYKGLPLEFGASTDIIQVEEQEEEDWLDDAVEAEPEPE---- 994 Query 178 DNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPT 237 + VN +GYLKLTDNV IK DIVEEA+ P Sbjct 995 -----------------------PLHEEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPM 1031 Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V+VNAAN++LKHGGGVAGALNKATN AMQ ESD YI NGPL VGGSC+LSGHNLAK CL Sbjct 1032 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCL 1091 Query 298 HVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYL 357 HVVGPN+N GEDIQLLK+AYENFN ++LLAPLLSAGIFGA P+ SL++CV TVRT VY+ Sbjct 1092 HVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYI 1151 Query 358 AVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKP---FITESKPSVEQRKQDDK-K 413 V DK LY+++V +L+ K E PK+EV P + + SV Q+ D K K Sbjct 1152 VVNDKVLYEQVVMDYLDSLKPK------VEAPKQEVLPKAEYPKVDEKSVVQKTIDVKPK 1205 Query 414 IKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVV 473 IKAC++EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPY+VGDV+ Sbjct 1206 IKACIDEVTTTLEETKFLTNKLLLFTDINGKLYQDSKNMLRGEDMSFLEKDAPYMVGDVI 1265 Query 474 QEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKS 533 G +T VVIP+KKAGGTTEML++AL+KVP + YITTYPGQG GYT+EEAKT LKKCKS Sbjct 1266 TSGDITCVVIPSKKAGGTTEMLSRALKKVPINEYITTYPGQGCAGYTLEEAKTALKKCKS 1325 Query 534 AFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKI 593 AFY+LPS N K+EILGTVSWNLREMLAHAEETRKLMPVC++ +AI++TIQRKYKGIKI Sbjct 1326 AFYVLPSETPNAKEEILGTVSWNLREMLAHAEETRKLMPVCMDVRAIMATIQRKYKGIKI 1385 Query 594 QEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKV 653 QEG+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK Sbjct 1386 QEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKA 1445 Query 654 PATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRG 713 PA VSVSSPDAVT YNGYLTSSSKT E+HF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRG Sbjct 1446 PAIVSVSSPDAVTTYNGYLTSSSKTSEDHFVETVSLAGSYRDWSYSGQRTELGVEFLKRG 1505 Query 714 DKSVYYT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTY 772 +K VY+T +P FHLDGEV+ D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTY Sbjct 1506 EKIVYHTLESPVKFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTY 1565 Query 773 GQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSAL 832 GQQ GPTYL+GADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSAL Sbjct 1566 GQQLGPTYLEGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSAL 1625 Query 833 NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANF 892 NHTKKWK+PQV GLTSIKWADNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AANF Sbjct 1626 NHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANF 1685 Query 893 CALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMY 952 CALILAY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMY Sbjct 1686 CALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMY 1745 Query 953 MGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGN 1012 MGTLSY+ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGN Sbjct 1746 MGTLSYDNLKMGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGN 1805 Query 1013 YQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCT 1072 YQCGHY HIT+KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV T Sbjct 1806 YQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYT 1865 Query 1073 EIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKP 1132 EI+PKLD YYKKDN+Y+TEQPIDL+P QP PNASFDNFK C N KFADDLNQ+TG+ KP Sbjct 1866 EIEPKLDGYYKKDNAYYTEQPIDLIPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKP 1925 Query 1133 ASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCI 1192 ASREL VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+ Sbjct 1926 ASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCL 1985 Query 1193 RCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTE 1252 RCLWSTKPV+TSNSF+VL ED QGMDNLACE +P EEVVENPTIQK+V+EC+VKTTE Sbjct 1986 RCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTPEEVVENPTIQKEVIECDVKTTE 2045 Query 1253 VVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAV 1312 VVG++ILKP++ +K+T+E+ H DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+ Sbjct 2046 VVGNVILKPSDEGVKVTQELDHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAI 2105 Query 1313 NSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRI 1372 NSVPW I Y KPFL + TT+N R + R+ NYMPY TLL QLCTFT+STNSRI Sbjct 2106 NSVPWGKILAYVKPFLGQAAVTTSNCAKRLVQRMFNNYMPYVLTLLFQLCTFTKSTNSRI 2165 Query 1373 KASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL 1432 +AS+PTTIAKN+V+ + + CL+A NY+KSP FSKL I +W LLLS+CLGSLIY TAAL Sbjct 2166 RASLPTTIAKNSVRGIVRLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAL 2225 Query 1433 GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT 1492 GVL+SN G PSYC+G RE YLNS+NVT +C GS PCSVCLSGLDSLD+YP+LETIQ+T Sbjct 2226 GVLLSNFGAPSYCSGVRESYLNSSNVTTMDFCEGSFPCSVCLSGLDSLDSYPALETIQVT 2285 Query 1493 ISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIIN 1552 ISS+K DLT GL AEWF AY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II+ Sbjct 2286 ISSYKLDLTILGLAAEWFFAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIIS 2345 Query 1553 LVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGV 1612 +VQMAP+SAMVRMYIFFASFYY+WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG+ Sbjct 2346 IVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGM 2405 Query 1613 RRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYI 1672 +RSFYVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+ Sbjct 2406 KRSFYVYANGGRGFCKTHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYV 2465 Query 1673 VDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCE 1732 VDSV VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ Sbjct 2466 VDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCD 2525 Query 1733 ESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLK 1792 ES+AKSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK Sbjct 2526 ESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLK 2585 Query 1793 TLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 LVATA +ELAK V+LD VLSTF+SA+RQG VD+DV+TKDV+ECLKLSH SD+EVTGDSC Sbjct 2586 ALVATAHSELAKGVALDGVLSTFVSASRQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSC 2645 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN+MLTYNKVENMTPRDLGACIDC+ARHINAQVA+SHN++LIWNVKD+MSLSEQLRKQIR Sbjct 2646 NNFMLTYNKVENMTPRDLGACIDCNARHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIR 2705 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 SAAKKNN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2706 SAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 2738 >sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 3044 bits (7891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1464/1953 (75%), Positives = 1677/1953 (86%), Gaps = 41/1953 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 APTK VTFG+DTV+EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APTKGVTFGEDTVVEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD+SGE KL+S MYCSFYPPDE+E+ + E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 120 EEEFEP--STQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSE 177 EEE + ++EYGTE+DY+G PLEFGA++ +Q EE++EEDWLDD + + Sbjct 939 EEEEVSERTCEHEYGTEEDYKGLPLEFGASTDIIQVEEQEEEDWLDDAVEAEPEPE---- 994 Query 178 DNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPT 237 + VN +GYLKLTDNV IK DIVEEA+ P Sbjct 995 -----------------------PLHEEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPM 1031 Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V+VNAAN++LKHGGGVAGALNKATN AMQ ESD YI NGPL VGGSC+LSGHNLAK CL Sbjct 1032 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCL 1091 Query 298 HVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYL 357 HVVGPN+N GEDIQLLK+AYENFN ++LLAPLLSAGIFGA P+ SL++CV TVRT VY+ Sbjct 1092 HVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYI 1151 Query 358 AVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKP---FITESKPSVEQRKQDDK-K 413 V DK LY+++V +L+ K E PK+EV P + + SV Q+ D K K Sbjct 1152 VVNDKVLYEQVVMDYLDSLKPK------VEAPKQEVLPKAEYPKVDEKSVVQKTIDVKPK 1205 Query 414 IKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVV 473 IKAC++EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPY+VGDV+ Sbjct 1206 IKACIDEVTTTLEETKFLTNKLLLFTDINGKLYQDSKNMLRGEDMSFLEKDAPYMVGDVI 1265 Query 474 QEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKS 533 G +T VVIP+KKAGGTTEML++AL+KVP + YITTYPGQG GYT+EEAKT LKKCKS Sbjct 1266 TSGDITCVVIPSKKAGGTTEMLSRALKKVPINEYITTYPGQGCAGYTLEEAKTALKKCKS 1325 Query 534 AFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKI 593 AFY+LPS N K+EILGTVSWNLREMLAHAEETRKLMPVC++ +AI++TIQRKYKGIKI Sbjct 1326 AFYVLPSETPNAKEEILGTVSWNLREMLAHAEETRKLMPVCMDVRAIMATIQRKYKGIKI 1385 Query 594 QEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKV 653 QEG+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK Sbjct 1386 QEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKA 1445 Query 654 PATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRG 713 PA VSVSSPDAVT YNGYLTSSSKT E+HF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRG Sbjct 1446 PAIVSVSSPDAVTTYNGYLTSSSKTSEDHFVETVSLAGSYRDWSYSGQRTELGVEFLKRG 1505 Query 714 DKSVYYT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTY 772 +K VY+T +P FHLDGEV+ D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTY Sbjct 1506 EKIVYHTLESPVKFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTY 1565 Query 773 GQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSAL 832 GQQ GPTYL+GADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSAL Sbjct 1566 GQQLGPTYLEGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSAL 1625 Query 833 NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANF 892 NHTKKWK+PQV GLTSIKWADNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AANF Sbjct 1626 NHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANF 1685 Query 893 CALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMY 952 CALILAY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMY Sbjct 1686 CALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMY 1745 Query 953 MGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGN 1012 MGTLSY+ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGN Sbjct 1746 MGTLSYDNLKMGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGN 1805 Query 1013 YQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCT 1072 YQCGHY HIT+KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV T Sbjct 1806 YQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYT 1865 Query 1073 EIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKP 1132 EI+PKLD YYKKDN+Y+TEQPIDL+P QP PNASFDNFK C N KFADDLNQ+TG+ KP Sbjct 1866 EIEPKLDGYYKKDNAYYTEQPIDLIPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKP 1925 Query 1133 ASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCI 1192 ASREL VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+ Sbjct 1926 ASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCL 1985 Query 1193 RCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTE 1252 RCLWSTKPV+TSNSF+VL ED QGMDNLACE +P EEVVENPTIQK+V+EC+VKTTE Sbjct 1986 RCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTPEEVVENPTIQKEVIECDVKTTE 2045 Query 1253 VVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAV 1312 VVG++ILKP++ +K+T+E+ H DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+ Sbjct 2046 VVGNVILKPSDEGVKVTQELDHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAI 2105 Query 1313 NSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRI 1372 NSVPW I Y KPFL + TT+N R + R+ NYMPY TLL QLCTFT+STNSRI Sbjct 2106 NSVPWGKILAYVKPFLGQAAVTTSNCAKRLVQRMFNNYMPYVLTLLFQLCTFTKSTNSRI 2165 Query 1373 KASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL 1432 +AS+PTTIAKN+V+ + + CL+A NY+KSP FSKL I +W LLLS+CLGSLIY TAAL Sbjct 2166 RASLPTTIAKNSVRGIVRLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAL 2225 Query 1433 GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT 1492 GVL+SN G PSYC+G RE YLNS+NVT +C GS PCSVCLSGLDSLD+YP+LETIQ+T Sbjct 2226 GVLLSNFGAPSYCSGVRESYLNSSNVTTMDFCEGSFPCSVCLSGLDSLDSYPALETIQVT 2285 Query 1493 ISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIIN 1552 ISS+K DLT GL AEWF AY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II+ Sbjct 2286 ISSYKLDLTILGLAAEWFFAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIIS 2345 Query 1553 LVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGV 1612 +VQMAP+SAMVRMYIFFASFYY+WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG+ Sbjct 2346 IVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGM 2405 Query 1613 RRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYI 1672 +RSFYVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+ Sbjct 2406 KRSFYVYANGGRGFCKTHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYV 2465 Query 1673 VDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCE 1732 VDSV VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ Sbjct 2466 VDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCD 2525 Query 1733 ESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLK 1792 ES+AKSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK Sbjct 2526 ESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLK 2585 Query 1793 TLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 LVATA +ELAK V+LD VLSTF+SA+RQG VD+DV+TKDV+ECLKLSH SD+EVTGDSC Sbjct 2586 ALVATAHSELAKGVALDGVLSTFVSASRQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSC 2645 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN+MLTYNKVENMTPRDLGACIDC+ARHINAQVA+SHN++LIWNVKD+MSLSEQLRKQIR Sbjct 2646 NNFMLTYNKVENMTPRDLGACIDCNARHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIR 2705 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 SAAKKNN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2706 SAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 2738 >sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus HKU3 OX=442736 GN=1a PE=3 SV=1 Length=4376 Score = 3030 bits (7855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1462/1951 (75%), Positives = 1671/1951 (86%), Gaps = 41/1951 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV+EVQGYK+V ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLTP+GIDLDEWS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ E Sbjct 879 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCE--E 936 Query 120 EEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQ-PEEEQEEDWLDDDSQQTVGQQDGSED 178 E+ E + ++EYGTEDDY+G PLEFGA++ EEE+EEDWLDD + + Sbjct 937 CEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPE----- 991 Query 179 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTV 238 + VN F GYLKLTDNV IK DIV+EA+ KPTV Sbjct 992 ----------------------PLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTV 1029 Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNAAN +LKHGGGVAGALNKATN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLH Sbjct 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 1089 Query 299 VVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLA 358 VVGPN+N GED+QLLK AYENFN +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLA Sbjct 1090 VVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLA 1149 Query 359 VFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES---KPSVEQRKQDDKKIK 415 V DK+LYD++V +L+ K E P +E +P + E +P E+ KIK Sbjct 1150 VNDKSLYDQIVLDYLDSLKPK------VESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIK 1203 Query 416 ACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQE 475 AC++EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPYIVGDV+ Sbjct 1204 ACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITS 1263 Query 476 GVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAF 535 G +T V+IP KK+GGTTEMLA+AL++VP YITTYPGQG GYT+EEAKT LKKCKSAF Sbjct 1264 GDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAF 1323 Query 536 YILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQE 595 Y+LPS NEK+E+LGTVSWNLREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QE Sbjct 1324 YVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQE 1383 Query 596 GVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPA 655 G+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA Sbjct 1384 GIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPA 1443 Query 656 TVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDK 715 VSVSSPDAVTAYNGYLTSSSKTPEE+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK Sbjct 1444 VVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDK 1503 Query 716 SVYYTS-NPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQ 774 VY+T+ +P FHLDGEV+ D LK+LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQ Sbjct 1504 IVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQ 1563 Query 775 QFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNH 834 QFGPTYLDGADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNH Sbjct 1564 QFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNH 1623 Query 835 TKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCA 894 TKKWK+PQV GLTSIKWADNNCYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCA Sbjct 1624 TKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCA 1683 Query 895 LILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMG 954 LILAY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMG Sbjct 1684 LILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMG 1743 Query 955 TLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQ 1014 TLSY++ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQ Sbjct 1744 TLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQ 1803 Query 1015 CGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEI 1074 CGHY HIT+KETLY +DGA LTK SEYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI Sbjct 1804 CGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEI 1863 Query 1075 DPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPAS 1134 +PKLD YYKK N+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+KKPAS Sbjct 1864 EPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPAS 1923 Query 1135 RELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRC 1194 REL VTFFPDLNGDVVAIDY+HY+ SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RC Sbjct 1924 RELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRC 1983 Query 1195 LWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVV 1254 LWSTKPV+TSNSF+VL ED QGMDNLACE SEEVVENPT+QK+++EC+VKTTEVV Sbjct 1984 LWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVV 2043 Query 1255 GDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNS 1314 G++ILKP+ +K+T+E+GH DLMAAYV+ +S+TIKKPNELS LGLKTLATHG AA+NS Sbjct 2044 GNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINS 2103 Query 1315 VPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKA 1374 VPW I Y KPFL + T+N + +C+ RV +NYMPY TLL QLCTFT+STNSRIKA Sbjct 2104 VPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKA 2163 Query 1375 SMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGV 1434 S+PTTIAKN+VKSV K CL+ NY+KSP FSKL I++W LLLS+CLGSL Y TA LGV Sbjct 2164 SLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGV 2223 Query 1435 LMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS 1494 +S+LG+PSYC G RE Y+NS+NVT +C G PCSVCLSGLDSLD+YP+LETIQ+TIS Sbjct 2224 CLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTIS 2283 Query 1495 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLV 1554 S+K DLT GL AEW LAY+LFT+FFY+LGL+AIMQ FF YFA HFISNSWLMW II++V Sbjct 2284 SYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIV 2343 Query 1555 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 1614 QMAP+SAMVRMYIFFASFYYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNGV+R Sbjct 2344 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 2403 Query 1615 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 1674 SFYVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VD Sbjct 2404 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 2463 Query 1675 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1734 SVTVKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES Sbjct 2464 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2523 Query 1735 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 1794 +AKSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK L Sbjct 2524 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 2583 Query 1795 VATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNN 1854 VATA +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN Sbjct 2584 VATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNN 2643 Query 1855 YMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSA 1914 +MLTYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSA Sbjct 2644 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSA 2703 Query 1915 AKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 AKKNN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2704 AKKNNIPFRLTCATTRQVVNVITTKISLKGG 2734 >sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 279/2005 OX=389167 GN=1a PE=3 SV=1 Length=4388 Score = 3023 bits (7837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1459/1956 (75%), Positives = 1663/1956 (85%), Gaps = 39/1956 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV+EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ + E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 120 EEEFEPSTQ--YEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSE 177 +EE P +EYGTEDDY+G PLEFGA++ + QQ +++ Sbjct 939 DEEEIPEETCEHEYGTEDDYKGLPLEFGAST----------------EIQQVDEEEEEDW 982 Query 178 DNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPT 237 + + E VN F+GYLKLTDNV IK DIV+EA+ KPT Sbjct 983 LEEAIAAKPEPEPL-----------PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPT 1031 Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V+VNAANV+LKHGGGVAGALNKATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK C+ Sbjct 1032 VIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCM 1091 Query 298 HVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYL 357 HVVGPN+N GED+QLLK+AY NFN +VLLAPLLSAGIFGA P+ SL++CV+TVRT VY Sbjct 1092 HVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYF 1151 Query 358 AVFDKNLYDKLVSSFLEMKSEKQVE---QKIAEIPKEEVKPFITESKPSVEQ----RKQD 410 AV D++LYD +V +L+ K VE Q+ E+ ++ +T+ +E+ K Sbjct 1152 AVNDQDLYDHVVLGYLDSLKPK-VETPTQENLELKEQPAVETLTQENLELEELPVIEKPV 1210 Query 411 DKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVG 470 D K KA +EEV T+LEETKFLT LLL+ DING L+ DS ++ D+ FL+KDAPYIVG Sbjct 1211 DVKFKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVG 1270 Query 471 DVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKK 530 DV+ G +T V+IP KKAGGTTEMLAKAL+KVP YITTYPGQG GYT+EEAKT L+K Sbjct 1271 DVISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRK 1330 Query 531 CKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKG 590 CKS FY+LPS N+K+EILGTVSWNLREMLAHAEETRKLM +C++ KA++STI R+YKG Sbjct 1331 CKSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKG 1390 Query 591 IKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRS 650 IK+QEG+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRS Sbjct 1391 IKVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRS 1450 Query 651 LKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFL 710 LK PA VSVSSPDAVT YNGYLTSSSKT EEHFIET+SLAG Y+DWSYSGQ T+LG+EFL Sbjct 1451 LKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFL 1510 Query 711 KRGDKSVYYT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMS 769 KRGDK VY+T +P FHLDGEV+ D LK+LLSLREVRTIKVFTTVDN NLHTQ+VDMS Sbjct 1511 KRGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMS 1570 Query 770 MTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYM 829 MTYGQQFGPTYLDGADVTKIKPH HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYM Sbjct 1571 MTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYM 1630 Query 830 SALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEA 889 SALNHTKKWK+PQ+ GLTSIKWADNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+A Sbjct 1631 SALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDA 1690 Query 890 ANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEA 949 ANFCALILAY N+TVGELGDVRETM++L QHANL+S KRVLNVVCKTCGQ+ TTL GVEA Sbjct 1691 ANFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEA 1750 Query 950 VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEY 1009 VMYMGTLSYE+ K GV IPC CG+ AT+YLVQQES FVMMSAPP++Y L+ G F CA+EY Sbjct 1751 VMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEY 1810 Query 1010 TGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGV 1069 TG+YQCGHY H+T KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV Sbjct 1811 TGSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGV 1870 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGY 1129 + TEI PKLD YYKKDN+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+ Sbjct 1871 IYTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGF 1930 Query 1130 KKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNT 1189 KKPASREL VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPI+WH+N TNK TYKPNT Sbjct 1931 KKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNT 1990 Query 1190 WCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVK 1249 WC+RCLWSTKPVETSNSF+VL+ ED QGMDNLACE P SEEVVENPTIQK+V+EC+VK Sbjct 1991 WCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVK 2050 Query 1250 TTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGL 1309 T EVVG++ILKP+ +K+T+E+GH DLMAAYV+ +S+TIKKPNELS LGL+TLATHG Sbjct 2051 TIEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGA 2110 Query 1310 AAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTN 1369 AA+NSVPW I Y KPFL + TTTN + RC+ RV NYMPY TLL QLCTFTRSTN Sbjct 2111 AAINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTN 2170 Query 1370 SRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYST 1429 SRI+AS+PTTIAKN+VKSV K CL+ NY+KSP FSKL I +W LLLS+CLGSLIY T Sbjct 2171 SRIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVT 2230 Query 1430 AALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETI 1489 AA GVL+SNLG+PSYC G RE Y+NS+NVT +C GS CSVCL+GLDSLD+YP+LETI Sbjct 2231 AAFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETI 2290 Query 1490 QITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWL 1549 Q+TISS+K DLT+ GL AEWFLAY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW Sbjct 2291 QVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWF 2350 Query 1550 IINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIV 1609 II++VQMAP+SAMVRMYIFFA YYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIV Sbjct 2351 IISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIV 2410 Query 1610 NGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS 1669 NG++RSFYVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS Sbjct 2411 NGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS 2470 Query 1670 SYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKS 1729 SY+VDSV VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKS Sbjct 2471 SYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKS 2530 Query 1730 KCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 1789 KC+ES+AKSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPME Sbjct 2531 KCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPME 2590 Query 1790 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 1849 KLK LVATA +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTG Sbjct 2591 KLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTG 2650 Query 1850 DSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRK 1909 DSCNN+MLTYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRK Sbjct 2651 DSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRK 2710 Query 1910 QIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 QIRSAAKKNN+PF+LTCATTRQVVN +TTKI+LKGG Sbjct 2711 QIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGG 2746 >sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 3022 bits (7834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1462/1951 (75%), Positives = 1671/1951 (86%), Gaps = 41/1951 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV+EVQGYK+V ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLTP+GIDLDEWS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ E Sbjct 879 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCE--E 936 Query 120 EEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQ-PEEEQEEDWLDDDSQQTVGQQDGSED 178 E+ E + ++EYGTEDDY+G PLEFGA++ EEE+EEDWLDD + + Sbjct 937 CEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPE----- 991 Query 179 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTV 238 + VN F GYLKLTDNV IK DIV+EA+ KPTV Sbjct 992 ----------------------PLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTV 1029 Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNAAN +LKHGGGVAGALNKATN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLH Sbjct 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 1089 Query 299 VVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLA 358 VVGPN+N GED+QLLK AYENFN +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLA Sbjct 1090 VVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLA 1149 Query 359 VFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES---KPSVEQRKQDDKKIK 415 V DK+LYD++V +L+ K E P +E +P + E +P E+ KIK Sbjct 1150 VNDKSLYDQIVLDYLDSLKPK------VESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIK 1203 Query 416 ACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQE 475 AC++EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPYIVGDV+ Sbjct 1204 ACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITS 1263 Query 476 GVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAF 535 G +T V+IP KK+GGTTEMLA+AL++VP YITTYPGQG GYT+EEAKT LKKCKSAF Sbjct 1264 GDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAF 1323 Query 536 YILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQE 595 Y+LPS NEK+E+LGTVSWNLREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QE Sbjct 1324 YVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQE 1383 Query 596 GVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPA 655 G+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA Sbjct 1384 GIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPA 1443 Query 656 TVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDK 715 VSVSSPDAVTAYNGYLTSSSKTPEE+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK Sbjct 1444 VVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDK 1503 Query 716 SVYYTS-NPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQ 774 VY+T+ +P FHLDGEV+ D LK+LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQ Sbjct 1504 IVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQ 1563 Query 775 QFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNH 834 QFGPTYLDGADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNH Sbjct 1564 QFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNH 1623 Query 835 TKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCA 894 TKKWK+PQV GLTSIKWADNNCYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCA Sbjct 1624 TKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCA 1683 Query 895 LILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMG 954 LILAY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMG Sbjct 1684 LILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMG 1743 Query 955 TLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQ 1014 TLSY++ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQ Sbjct 1744 TLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQ 1803 Query 1015 CGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEI 1074 CGHY HIT+KETLY +DGA LTK SEYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI Sbjct 1804 CGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEI 1863 Query 1075 DPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPAS 1134 +PKLD YYKK N+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+KKPAS Sbjct 1864 EPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPAS 1923 Query 1135 RELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRC 1194 REL VTFFPDLNGDVVAIDY+HY+ SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RC Sbjct 1924 RELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRC 1983 Query 1195 LWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVV 1254 LWSTKPV+TSNSF+VL ED QGMDNLACE SEEVVENPT+QK+++EC+VKTTEVV Sbjct 1984 LWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVV 2043 Query 1255 GDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNS 1314 G++ILKP+ +K+T+E+GH DLMAAYV+ +S+TIKKPNELS LGLKTLATHG AA+NS Sbjct 2044 GNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINS 2103 Query 1315 VPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKA 1374 VPW I Y KPFL + T+N + +C+ RV +NYMPY TLL QLCTFT+STNSRIKA Sbjct 2104 VPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKA 2163 Query 1375 SMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGV 1434 S+PTTIAKN+VKSV K CL+ NY+KSP FSKL I++W LLLS+CLGSL Y TA LGV Sbjct 2164 SLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGV 2223 Query 1435 LMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS 1494 +S+LG+PSYC G RE Y+NS+NVT +C G PCSVCLSGLDSLD+YP+LETIQ+TIS Sbjct 2224 CLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTIS 2283 Query 1495 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLV 1554 S+K DLT GL AEW LAY+LFT+FFY+LGL+AIMQ FF YFA HFISNSWLMW II++V Sbjct 2284 SYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIV 2343 Query 1555 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 1614 QMAP+SAMVRMYIFFASFYYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNGV+R Sbjct 2344 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 2403 Query 1615 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 1674 SFYVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VD Sbjct 2404 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 2463 Query 1675 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1734 SVTVKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES Sbjct 2464 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2523 Query 1735 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 1794 +AKSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK L Sbjct 2524 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 2583 Query 1795 VATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNN 1854 VATA +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN Sbjct 2584 VATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNN 2643 Query 1855 YMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSA 1914 +MLTYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSA Sbjct 2644 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSA 2703 Query 1915 AKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 AKKNN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2704 AKKNNIPFRLTCATTRQVVNVITTKISLKGG 2734 >sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 3015 bits (7816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1459/1956 (75%), Positives = 1663/1956 (85%), Gaps = 39/1956 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV+EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ + E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 120 EEEFEPSTQ--YEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSE 177 +EE P +EYGTEDDY+G PLEFGA++ + QQ +++ Sbjct 939 DEEEIPEETCEHEYGTEDDYKGLPLEFGAST----------------EIQQVDEEEEEDW 982 Query 178 DNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPT 237 + + E VN F+GYLKLTDNV IK DIV+EA+ KPT Sbjct 983 LEEAIAAKPEPEPL-----------PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPT 1031 Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V+VNAANV+LKHGGGVAGALNKATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK C+ Sbjct 1032 VIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCM 1091 Query 298 HVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYL 357 HVVGPN+N GED+QLLK+AY NFN +VLLAPLLSAGIFGA P+ SL++CV+TVRT VY Sbjct 1092 HVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYF 1151 Query 358 AVFDKNLYDKLVSSFLEMKSEKQVE---QKIAEIPKEEVKPFITESKPSVEQ----RKQD 410 AV D++LYD +V +L+ K VE Q+ E+ ++ +T+ +E+ K Sbjct 1152 AVNDQDLYDHVVLGYLDSLKPK-VETPTQENLELKEQPAVETLTQENLELEELPVIEKPV 1210 Query 411 DKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVG 470 D K KA +EEV T+LEETKFLT LLL+ DING L+ DS ++ D+ FL+KDAPYIVG Sbjct 1211 DVKFKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVG 1270 Query 471 DVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKK 530 DV+ G +T V+IP KKAGGTTEMLAKAL+KVP YITTYPGQG GYT+EEAKT L+K Sbjct 1271 DVISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRK 1330 Query 531 CKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKG 590 CKS FY+LPS N+K+EILGTVSWNLREMLAHAEETRKLM +C++ KA++STI R+YKG Sbjct 1331 CKSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKG 1390 Query 591 IKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRS 650 IK+QEG+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRS Sbjct 1391 IKVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRS 1450 Query 651 LKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFL 710 LK PA VSVSSPDAVT YNGYLTSSSKT EEHFIET+SLAG Y+DWSYSGQ T+LG+EFL Sbjct 1451 LKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFL 1510 Query 711 KRGDKSVYYT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMS 769 KRGDK VY+T +P FHLDGEV+ D LK+LLSLREVRTIKVFTTVDN NLHTQ+VDMS Sbjct 1511 KRGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMS 1570 Query 770 MTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYM 829 MTYGQQFGPTYLDGADVTKIKPH HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYM Sbjct 1571 MTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYM 1630 Query 830 SALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEA 889 SALNHTKKWK+PQ+ GLTSIKWADNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+A Sbjct 1631 SALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDA 1690 Query 890 ANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEA 949 ANFCALILAY N+TVGELGDVRETM++L QHANL+S KRVLNVVCKTCGQ+ TTL GVEA Sbjct 1691 ANFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEA 1750 Query 950 VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEY 1009 VMYMGTLSYE+ K GV IPC CG+ AT+YLVQQES FVMMSAPP++Y L+ G F CA+EY Sbjct 1751 VMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEY 1810 Query 1010 TGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGV 1069 TG+YQCGHY H+T KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV Sbjct 1811 TGSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGV 1870 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGY 1129 + TEI PKLD YYKKDN+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+ Sbjct 1871 IYTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGF 1930 Query 1130 KKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNT 1189 KKPASREL VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPI+WH+N TNK TYKPNT Sbjct 1931 KKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNT 1990 Query 1190 WCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVK 1249 WC+RCLWSTKPVETSNSF+VL+ ED QGMDNLACE P SEEVVENPTIQK+V+EC+VK Sbjct 1991 WCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVK 2050 Query 1250 TTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGL 1309 T EVVG++ILKP+ +K+T+E+GH DLMAAYV+ +S+TIKKPNELS LGL+TLATHG Sbjct 2051 TIEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGA 2110 Query 1310 AAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTN 1369 AA+NSVPW I Y KPFL + TTTN + RC+ RV NYMPY TLL QLCTFTRSTN Sbjct 2111 AAINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTN 2170 Query 1370 SRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYST 1429 SRI+AS+PTTIAKN+VKSV K CL+ NY+KSP FSKL I +W LLLS+CLGSLIY T Sbjct 2171 SRIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVT 2230 Query 1430 AALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETI 1489 AA GVL+SNLG+PSYC G RE Y+NS+NVT +C GS CSVCL+GLDSLD+YP+LETI Sbjct 2231 AAFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETI 2290 Query 1490 QITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWL 1549 Q+TISS+K DLT+ GL AEWFLAY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW Sbjct 2291 QVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWF 2350 Query 1550 IINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIV 1609 II++VQMAP+SAMVRMYIFFA YYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIV Sbjct 2351 IISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIV 2410 Query 1610 NGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS 1669 NG++RSFYVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS Sbjct 2411 NGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS 2470 Query 1670 SYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKS 1729 SY+VDSV VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKS Sbjct 2471 SYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKS 2530 Query 1730 KCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 1789 KC+ES+AKSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPME Sbjct 2531 KCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPME 2590 Query 1790 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 1849 KLK LVATA +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTG Sbjct 2591 KLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTG 2650 Query 1850 DSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRK 1909 DSCNN+MLTYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRK Sbjct 2651 DSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRK 2710 Query 1910 QIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 QIRSAAKKNN+PF+LTCATTRQVVN +TTKI+LKGG Sbjct 2711 QIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGG 2746 >sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus HKU5 OX=694008 GN=1a PE=3 SV=1 Length=4481 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/1462 (33%), Positives = 751/1462 (51%), Gaps = 98/1462 (7%) Query 573 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 632 +C + A ++ + + + VD G ++Y Y+SK + +I N + + MP+ Sbjct 1379 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 1436 Query 633 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 692 GYVTHGL+L +A + ++ + VP ++S D V N + + +TPE+ FI T+ G Sbjct 1437 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 1494 Query 693 YKDWSY-SGQSTQLGIEF---LKRGDKSVYYTSNPTTFHLDGEV-ITFDNL---KTLLSL 744 Y W +G+ G+ + L D+++ Y N + + G++ + FD+L +T L+ Sbjct 1495 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADN-KFYVVKGQIALPFDSLEKCRTYLTS 1553 Query 745 R--EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 802 R + + + V T+D +N T V++ + TY Q G + G+D++ P G+ Y+ Sbjct 1554 RAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL 1613 Query 803 LPN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATA 861 N + + E Y T D +FL RY S L KKWKY +G+ S+K NNCY+ Sbjct 1614 ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVT 1673 Query 862 LLTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH 920 +L L + E+KF PALQ AY + + G++ F ALI+AY + T GE D + + Sbjct 1674 MLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSK 1733 Query 921 ANLDS-CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYL 979 A L + K V C CG Q TT G++A +Y+G S ++ + C CG + L Sbjct 1734 AELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQL 1793 Query 980 VQQESPFVMMSAPPAQYELKHGTFTCASEYTG-------NYQCGHYKHITSKETL-YCID 1031 V+ +P++++S + + + +YT GHY H+ K+ L Y D Sbjct 1794 VEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYD 1853 Query 1032 GALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTE 1091 L+K+S+ K +TDV+Y + Y+ V Y LDG ++DP L +Y KD YFT+ Sbjct 1854 SGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTK 1913 Query 1092 QPI------DLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGY--KKPASRELKVTFFP 1143 +P+ ++ Y N+ + + N L G+ KP S++L +FFP Sbjct 1914 KPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFP 1973 Query 1144 DLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVET 1203 D GDV+ +Y Y P +K GA L KPI+W N+ + A K N +R ++ PV Sbjct 1974 DFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTL 2033 Query 1204 SNSFDVLKSEDAQGMDNLAC-EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGD---II 1258 N + VL+ Q ++ A ED KP S +V E+ + +++C V D + Sbjct 2034 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 2093 Query 1259 LKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 1317 P + + + +G DL A YVD N L + K N S + + T+ L+ + + Sbjct 2094 NDP--QGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGS 2151 Query 1318 DT----IANYAKPFLNKVVSTTTNIVT---RCLNRVCTNYMP------YFFTLLLQLC-- 1362 T I A + S T N+ T + L R+ N + F LL L Sbjct 2152 ITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLIL 2211 Query 1363 --TFTRSTN-SRIKASMPTTIAKNTVKS-VGKFCLEASFNYLKSPNFSKLINIIIWFLLL 1418 TF +S N S +K + V + V K C A+++ L F ++ LL Sbjct 2212 PFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVV-KFKRIDWKSTLRLLF 2270 Query 1419 SVC------------------LGSLIYSTAALGVLM------SNLGMPSYCTGYREGYLN 1454 +C L S + A G+L S LG+ S C G E Y N Sbjct 2271 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRN 2330 Query 1455 STNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAY 1513 + + +C+ S C+ CL G DSL Y + + IQ ++S+ ++ V E+ LAY Sbjct 2331 -VSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAY 2389 Query 1514 ILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFAS 1571 +L+T F VL L Q FFSY V++ S ++L+ V P+ +VR+Y F A Sbjct 2390 VLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLAC 2449 Query 1572 FYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHN 1631 +++ + Y HV++GC + C++CYKRNR TRVE +T+V G +R+FY+ ANGG FC HN Sbjct 2450 LWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHN 2509 Query 1632 WNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAG 1691 WNCV+CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + G Sbjct 2510 WNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREG 2569 Query 1692 QKTYERHSLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLM 1747 YER+ L +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ++ Sbjct 2570 ASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVL 2629 Query 1748 CQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVS 1807 +P+LL+D +V+ VGDS E+A KM D+YVN+F S F V +KL LVATA + + Sbjct 2630 SKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDD 2689 Query 1808 LDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMT 1866 V+ TF AAR V+SDVET +V+ L+ +++ D+++T + NNY+ +Y K +++ Sbjct 2690 FQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVA 2749 Query 1867 PRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTC 1926 DLG ID +A +N ++ N A IWN D+M LS+ L++QIR A +K N+PF+LT Sbjct 2750 TADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTT 2809 Query 1927 ATTRQVVNVVTTKIA---LKGG 1945 + R N+++ K + L GG Sbjct 2810 SRLRSADNILSVKFSATKLSGG 2831 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/158 (42%), Positives = 102/158 (65%), Gaps = 0/158 (0%) Query 213 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 272 ++ L ++V + D + A+ + ++VNAAN +LKHGGG+A A+++A+ +Q ESDDY Sbjct 1192 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 1251 Query 273 IATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLS 332 + GPL VG S +L GH LA LHVVGP+ +DIQLLK Y+ FN++ ++++PL+S Sbjct 1252 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 1311 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 370 AGIF +P SL + V T Y+ V + +Y+ L + Sbjct 1312 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDLAA 1349 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 94/209 (45%), Gaps = 10/209 (5%) Query 2 PTKVTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYTVELGTEVNEFACVVADA 60 P V FG + E+ +SV++ +++ +D +L + + +TVE V +F VV D Sbjct 854 PKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKDE 913 Query 61 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 120 VI+ L + G DL++++ Y+++ G+ +S M S P +E EEE D + Sbjct 914 VIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDDY 973 Query 121 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 180 E E ++ ED+ + A A+ P E+ + D L + + D +E Sbjct 974 VEDEYLSEEMLVEEDEN-----SWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQAS 1028 Query 181 TTTIQTIVEVQPQLEMELTPVVQTIEVNS 209 T VEV +E + V EV S Sbjct 1029 TEE----VEVPSACVLEASQVANAAEVES 1053 >sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/1462 (33%), Positives = 751/1462 (51%), Gaps = 98/1462 (7%) Query 573 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 632 +C + A ++ + + + VD G ++Y Y+SK + +I N + + MP+ Sbjct 1379 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 1436 Query 633 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 692 GYVTHGL+L +A + ++ + VP ++S D V N + + +TPE+ FI T+ G Sbjct 1437 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 1494 Query 693 YKDWSY-SGQSTQLGIEF---LKRGDKSVYYTSNPTTFHLDGEV-ITFDNL---KTLLSL 744 Y W +G+ G+ + L D+++ Y N + + G++ + FD+L +T L+ Sbjct 1495 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADN-KFYVVKGQIALPFDSLEKCRTYLTS 1553 Query 745 R--EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 802 R + + + V T+D +N T V++ + TY Q G + G+D++ P G+ Y+ Sbjct 1554 RAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL 1613 Query 803 LPN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATA 861 N + + E Y T D +FL RY S L KKWKY +G+ S+K NNCY+ Sbjct 1614 ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVT 1673 Query 862 LLTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH 920 +L L + E+KF PALQ AY + + G++ F ALI+AY + T GE D + + Sbjct 1674 MLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSK 1733 Query 921 ANLDS-CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYL 979 A L + K V C CG Q TT G++A +Y+G S ++ + C CG + L Sbjct 1734 AELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQL 1793 Query 980 VQQESPFVMMSAPPAQYELKHGTFTCASEYTG-------NYQCGHYKHITSKETL-YCID 1031 V+ +P++++S + + + +YT GHY H+ K+ L Y D Sbjct 1794 VEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYD 1853 Query 1032 GALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTE 1091 L+K+S+ K +TDV+Y + Y+ V Y LDG ++DP L +Y KD YFT+ Sbjct 1854 SGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTK 1913 Query 1092 QPI------DLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGY--KKPASRELKVTFFP 1143 +P+ ++ Y N+ + + N L G+ KP S++L +FFP Sbjct 1914 KPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFP 1973 Query 1144 DLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVET 1203 D GDV+ +Y Y P +K GA L KPI+W N+ + A K N +R ++ PV Sbjct 1974 DFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTL 2033 Query 1204 SNSFDVLKSEDAQGMDNLAC-EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGD---II 1258 N + VL+ Q ++ A ED KP S +V E+ + +++C V D + Sbjct 2034 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 2093 Query 1259 LKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 1317 P + + + +G DL A YVD N L + K N S + + T+ L+ + + Sbjct 2094 NDP--QGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGS 2151 Query 1318 DT----IANYAKPFLNKVVSTTTNIVT---RCLNRVCTNYMP------YFFTLLLQLC-- 1362 T I A + S T N+ T + L R+ N + F LL L Sbjct 2152 ITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLIL 2211 Query 1363 --TFTRSTN-SRIKASMPTTIAKNTVKS-VGKFCLEASFNYLKSPNFSKLINIIIWFLLL 1418 TF +S N S +K + V + V K C A+++ L F ++ LL Sbjct 2212 PFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVV-KFKRIDWKSTLRLLF 2270 Query 1419 SVC------------------LGSLIYSTAALGVLM------SNLGMPSYCTGYREGYLN 1454 +C L S + A G+L S LG+ S C G E Y N Sbjct 2271 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRN 2330 Query 1455 STNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAY 1513 + + +C+ S C+ CL G DSL Y + + IQ ++S+ ++ V E+ LAY Sbjct 2331 -VSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAY 2389 Query 1514 ILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFAS 1571 +L+T F VL L Q FFSY V++ S ++L+ V P+ +VR+Y F A Sbjct 2390 VLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLAC 2449 Query 1572 FYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHN 1631 +++ + Y HV++GC + C++CYKRNR TRVE +T+V G +R+FY+ ANGG FC HN Sbjct 2450 LWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHN 2509 Query 1632 WNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAG 1691 WNCV+CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + G Sbjct 2510 WNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREG 2569 Query 1692 QKTYERHSLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLM 1747 YER+ L +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ++ Sbjct 2570 ASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVL 2629 Query 1748 CQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVS 1807 +P+LL+D +V+ VGDS E+A KM D+YVN+F S F V +KL LVATA + + Sbjct 2630 SKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDD 2689 Query 1808 LDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMT 1866 V+ TF AAR V+SDVET +V+ L+ +++ D+++T + NNY+ +Y K +++ Sbjct 2690 FQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVA 2749 Query 1867 PRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTC 1926 DLG ID +A +N ++ N A IWN D+M LS+ L++QIR A +K N+PF+LT Sbjct 2750 TADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTT 2809 Query 1927 ATTRQVVNVVTTKIA---LKGG 1945 + R N+++ K + L GG Sbjct 2810 SRLRSADNILSVKFSATKLSGG 2831 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 66/158 (42%), Positives = 102/158 (65%), Gaps = 0/158 (0%) Query 213 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 272 ++ L ++V + D + A+ + ++VNAAN +LKHGGG+A A+++A+ +Q ESDDY Sbjct 1192 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 1251 Query 273 IATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLS 332 + GPL VG S +L GH LA LHVVGP+ +DIQLLK Y+ FN++ ++++PL+S Sbjct 1252 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 1311 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 370 AGIF +P SL + V T Y+ V + +Y+ L + Sbjct 1312 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDLAA 1349 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 94/209 (45%), Gaps = 10/209 (5%) Query 2 PTKVTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYTVELGTEVNEFACVVADA 60 P V FG + E+ +SV++ +++ +D +L + + +TVE V +F VV D Sbjct 854 PKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKDE 913 Query 61 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 120 VI+ L + G DL++++ Y+++ G+ +S M S P +E EEE D + Sbjct 914 VIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDDY 973 Query 121 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 180 E E ++ ED+ + A A+ P E+ + D L + + D +E Sbjct 974 VEDEYLSEEMLVEEDEN-----SWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQAS 1028 Query 181 TTTIQTIVEVQPQLEMELTPVVQTIEVNS 209 T VEV +E + V EV S Sbjct 1029 TEE----VEVPSACVLEASQVANAAEVES 1053 >sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus HKU9 OX=694006 GN=1a PE=3 SV=1 Length=4248 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/1449 (31%), Positives = 732/1449 (51%), Gaps = 106/1449 (7%) Query 549 ILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY-GARFYFY 607 ++ VS + M+ +E L+PV ++ A + ++R +EG+ G FY Y Sbjct 1216 LVDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFSSNGYEFYGY 1271 Query 608 TSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTA 667 + + + LN L L+ +P G++ +G L +A MR L VP TV V S +V Sbjct 1272 SRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVVPSESSVPL 1331 Query 668 YNGYLT---SSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIE----FLKRGDKSVYYT 720 Y Y S T + F+ I L G+ +DW + + + KRG+ + + Sbjct 1332 YRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDVLQTTCTVDRKVYKTICKRGNTYLCF- 1389 Query 721 SNPTTFHLDGEVI-TFDNLKTLLSLREVRT------IKVFTTVDNINLHTQVVDMSMTYG 773 + + + G+V+ F + + E + IKV TTVD IN T +V + +Y Sbjct 1390 DDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLVSTAQSYR 1449 Query 774 QQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYMSAL 832 Q G + DG D + P + EG Y N + V A EYY D + + R MS Sbjct 1450 AQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNIIARAMSIR 1509 Query 833 NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANF 892 + W Y V+G + D+NCYL A+ LQ I++ F+ P + AY + G Sbjct 1510 KTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVCRAYDALKGGNPLPM 1569 Query 893 CALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMY 952 +++A T G D +S + H + + +RV+ VC+ CG Q G +A + Sbjct 1570 AEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCGVSQMVFTGTDACTF 1628 Query 953 MGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELK-HGTFTCASEYTG 1011 G++ + V + C CG+ A +Y+ +Q+SP+++MS P Q L G + A + G Sbjct 1629 YGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPLDTSGIWKTAIVFRG 1688 Query 1012 NYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVC 1071 GHY + + + D ++S+ K P TD+ Y S+T+ K TY LDGV Sbjct 1689 PVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTSDSKVETYYLDGVKR 1748 Query 1072 TEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFV-CDNIKFADDLNQLTGYK 1130 T IDP Y K+ + YFT PI++V P S+D F C N + A+ N+ Sbjct 1749 TTIDPDFSKYVKRGDYYFTTAPIEVVA-APKLVTSYDGFYLSSCQNPQLAESFNKAINAT 1807 Query 1131 KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTW 1190 K +L +T +P++ GDVVAI + + G+ + KP+++ +PNTW Sbjct 1808 KTGPMKL-LTMYPNVAGDVVAISDDNVV-AHPYGSLHMGKPVLF---------VTRPNTW 1856 Query 1191 C-IRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENP-TIQKDVLECNV 1248 + L ST V T N++DVL D PV+ E E P +++ + + Sbjct 1857 KKLVPLLSTVVVNTPNTYDVLAV------------DPLPVNNETSEEPISVKAPIPLYGL 1904 Query 1249 KTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVDN-SSLTIKKPNELSRVLGLKTLAT 1306 K T V+ P N L +E TDL YV+ + K + LS+VLGL+ + Sbjct 1905 KATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKASHLSKVLGLRV--S 1962 Query 1307 HGLAAVNSVPWDTIANYAKPFLNKVVSTTT--NIVTRCLNRV------------CTNYMP 1352 VN + + YA L V+T+ +VTR + + C + Sbjct 1963 DSSLHVNHLSKGVVYAYAATRLTTRVTTSLLGGLVTRSVRKTADFVRSTNPGSKCVGLLC 2022 Query 1353 YFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSP----NFSKL 1408 F+ L ++ + +K S IA NT V L NYL+S ++S+L Sbjct 2023 LFYQLFMRFWLLVKKP-PIVKVS--GIIAYNTGCGVTTCVL----NYLRSRCGNISWSRL 2075 Query 1409 INII-----IWFLL--LSVCLGSLIYSTAALGVLMSNLGMPSYCTGYRE--GYLNSTNVT 1459 + ++ IWF+ L++C GV +S PS T ++ G + + Sbjct 2076 LKLLRYMLYIWFVWTCLTIC-----------GVWLSEPYAPSLVTRFKYFLGIVMPCDYV 2124 Query 1460 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 1519 + +C++G+DSLD YP+L Q S ++ T ++ E F AY+L+T Sbjct 2125 LVNETGTGWLHHLCMAGMDSLD-YPALRMQQHRYGS-PYNYTYILMLLEAFFAYLLYTPA 2182 Query 1520 FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 1579 ++G+ A++ L Y + + NSWL+ + ++++ P ++M+RMYI A + +K + Sbjct 2183 LPIVGILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGF 2241 Query 1580 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 1639 +HV GCN+ C+MCYK+N A R+EC+T+VNGV+R FYV ANGG FC HNWNCV+CDT Sbjct 2242 LHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDT 2301 Query 1640 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 1699 + STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ++YER Sbjct 2302 YTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYERFP 2361 Query 1700 LSHFVNLDNLRANNTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 1758 + F N+ L + KG+ P NV+VFD ++ EE++ K+A++YY+QL C+PILL+D+ + Sbjct 2362 MDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRM 2421 Query 1759 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 1818 V VGD A +A MF+AY + +++ M+K+K L +TA +++ +++++VL F+ + Sbjct 2422 VGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVFVGS 2481 Query 1819 ARQGFVD--SDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 1876 R D SDV+T D+V C++L HQ E T DS NN + TY K + ++ ++G + Sbjct 2482 TRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQFMTA 2541 Query 1877 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 1936 +A+++NA +AK + LIW DF+ LSE +R+Q++ AA+K L +T ++ + V + Sbjct 2542 NAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKADVPCM 2601 Query 1937 TTKIALKGG 1945 T + GG Sbjct 2602 VTPFKIIGG 2610 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 134/397 (34%), Positives = 202/397 (51%), Gaps = 62/397 (16%) Query 3 TKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVI 62 +KVTFGD+ V + +VN ++++ E +D +L++ + + VE GT++ + ACVV AV Sbjct 775 SKVTFGDEEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAVY 834 Query 63 KTLQPV----SELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSF--YPPDEDEEEG 116 + L + L P I+L+++ + +++ + E L MY S P +DE Sbjct 835 ERLSDLFSDCPAELRP--INLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDDEMVD 892 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 D E+ ++ + ++ WL D +G+ Sbjct 893 DIED-----------------------------TVEQASDSDDQWLGD---------EGA 914 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKP 236 ED TI +V M TP GY K+ ++VYIK ADIV+EA+ Sbjct 915 EDCD----NTIQDVDVATSMT-TP----------CGYTKIAEHVYIKCADIVQEARNYSY 959 Query 237 TVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH- 295 V+VNAANV L HGGGVAGALN+ATNNAMQ ES +YI NG L+ GG +LS H LA H Sbjct 960 AVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGHVLLSSHGLASHG 1019 Query 296 CLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNV 355 LHVVGP+ G+D+ LL + Y + + +L PL+SAGIFG SL V V Sbjct 1020 ILHVVGPDKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLVKNVACTT 1079 Query 356 YLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEE 392 Y+ V+D+ LY++ +++ ++ + Q + I E Sbjct 1080 YVVVYDRQLYERALATSFDVPGPQSSVQHVPAIDWAE 1116 >sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/1449 (31%), Positives = 732/1449 (51%), Gaps = 106/1449 (7%) Query 549 ILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY-GARFYFY 607 ++ VS + M+ +E L+PV ++ A + ++R +EG+ G FY Y Sbjct 1216 LVDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFSSNGYEFYGY 1271 Query 608 TSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTA 667 + + + LN L L+ +P G++ +G L +A MR L VP TV V S +V Sbjct 1272 SRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVVPSESSVPL 1331 Query 668 YNGYLT---SSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIE----FLKRGDKSVYYT 720 Y Y S T + F+ I L G+ +DW + + + KRG+ + + Sbjct 1332 YRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDVLQTTCTVDRKVYKTICKRGNTYLCF- 1389 Query 721 SNPTTFHLDGEVI-TFDNLKTLLSLREVRT------IKVFTTVDNINLHTQVVDMSMTYG 773 + + + G+V+ F + + E + IKV TTVD IN T +V + +Y Sbjct 1390 DDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLVSTAQSYR 1449 Query 774 QQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYMSAL 832 Q G + DG D + P + EG Y N + V A EYY D + + R MS Sbjct 1450 AQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNIIARAMSIR 1509 Query 833 NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANF 892 + W Y V+G + D+NCYL A+ LQ I++ F+ P + AY + G Sbjct 1510 KTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVCRAYDALKGGNPLPM 1569 Query 893 CALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMY 952 +++A T G D +S + H + + +RV+ VC+ CG Q G +A + Sbjct 1570 AEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCGVSQMVFTGTDACTF 1628 Query 953 MGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELK-HGTFTCASEYTG 1011 G++ + V + C CG+ A +Y+ +Q+SP+++MS P Q L G + A + G Sbjct 1629 YGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPLDTSGIWKTAIVFRG 1688 Query 1012 NYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVC 1071 GHY + + + D ++S+ K P TD+ Y S+T+ K TY LDGV Sbjct 1689 PVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTSDSKVETYYLDGVKR 1748 Query 1072 TEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFV-CDNIKFADDLNQLTGYK 1130 T IDP Y K+ + YFT PI++V P S+D F C N + A+ N+ Sbjct 1749 TTIDPDFSKYVKRGDYYFTTAPIEVVA-APKLVTSYDGFYLSSCQNPQLAESFNKAINAT 1807 Query 1131 KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTW 1190 K +L +T +P++ GDVVAI + + G+ + KP+++ +PNTW Sbjct 1808 KTGPMKL-LTMYPNVAGDVVAISDDNVV-AHPYGSLHMGKPVLF---------VTRPNTW 1856 Query 1191 C-IRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENP-TIQKDVLECNV 1248 + L ST V T N++DVL D PV+ E E P +++ + + Sbjct 1857 KKLVPLLSTVVVNTPNTYDVLAV------------DPLPVNNETSEEPISVKAPIPLYGL 1904 Query 1249 KTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVDN-SSLTIKKPNELSRVLGLKTLAT 1306 K T V+ P N L +E TDL YV+ + K + LS+VLGL+ + Sbjct 1905 KATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKASHLSKVLGLRV--S 1962 Query 1307 HGLAAVNSVPWDTIANYAKPFLNKVVSTTT--NIVTRCLNRV------------CTNYMP 1352 VN + + YA L V+T+ +VTR + + C + Sbjct 1963 DSSLHVNHLSKGVVYAYAATRLTTRVTTSLLGGLVTRSVRKTADFVRSTNPGSKCVGLLC 2022 Query 1353 YFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSP----NFSKL 1408 F+ L ++ + +K S IA NT V L NYL+S ++S+L Sbjct 2023 LFYQLFMRFWLLVKKP-PIVKVS--GIIAYNTGCGVTTCVL----NYLRSRCGNISWSRL 2075 Query 1409 INII-----IWFLL--LSVCLGSLIYSTAALGVLMSNLGMPSYCTGYRE--GYLNSTNVT 1459 + ++ IWF+ L++C GV +S PS T ++ G + + Sbjct 2076 LKLLRYMLYIWFVWTCLTIC-----------GVWLSEPYAPSLVTRFKYFLGIVMPCDYV 2124 Query 1460 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 1519 + +C++G+DSLD YP+L Q S ++ T ++ E F AY+L+T Sbjct 2125 LVNETGTGWLHHLCMAGMDSLD-YPALRMQQHRYGS-PYNYTYILMLLEAFFAYLLYTPA 2182 Query 1520 FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 1579 ++G+ A++ L Y + + NSWL+ + ++++ P ++M+RMYI A + +K + Sbjct 2183 LPIVGILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGF 2241 Query 1580 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 1639 +HV GCN+ C+MCYK+N A R+EC+T+VNGV+R FYV ANGG FC HNWNCV+CDT Sbjct 2242 LHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDT 2301 Query 1640 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 1699 + STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ++YER Sbjct 2302 YTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYERFP 2361 Query 1700 LSHFVNLDNLRANNTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 1758 + F N+ L + KG+ P NV+VFD ++ EE++ K+A++YY+QL C+PILL+D+ + Sbjct 2362 MDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRM 2421 Query 1759 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 1818 V VGD A +A MF+AY + +++ M+K+K L +TA +++ +++++VL F+ + Sbjct 2422 VGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVFVGS 2481 Query 1819 ARQGFVD--SDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 1876 R D SDV+T D+V C++L HQ E T DS NN + TY K + ++ ++G + Sbjct 2482 TRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQFMTA 2541 Query 1877 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 1936 +A+++NA +AK + LIW DF+ LSE +R+Q++ AA+K L +T ++ + V + Sbjct 2542 NAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKADVPCM 2601 Query 1937 TTKIALKGG 1945 T + GG Sbjct 2602 VTPFKIIGG 2610 Score = 194 bits (492), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 134/397 (34%), Positives = 202/397 (51%), Gaps = 62/397 (16%) Query 3 TKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVI 62 +KVTFGD+ V + +VN ++++ E +D +L++ + + VE GT++ + ACVV AV Sbjct 775 SKVTFGDEEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAVY 834 Query 63 KTLQPV----SELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP--PDEDEEEG 116 + L + L P I+L+++ + +++ + E L MY S P +DE Sbjct 835 ERLSDLFSDCPAELRP--INLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDDEMVD 892 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 D E+ ++ + ++ WL D +G+ Sbjct 893 DIED-----------------------------TVEQASDSDDQWLGD---------EGA 914 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKP 236 ED TI +V M TP GY K+ ++VYIK ADIV+EA+ Sbjct 915 EDCD----NTIQDVDVATSMT-TP----------CGYTKIAEHVYIKCADIVQEARNYSY 959 Query 237 TVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH- 295 V+VNAANV L HGGGVAGALN+ATNNAMQ ES +YI NG L+ GG +LS H LA H Sbjct 960 AVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGHVLLSSHGLASHG 1019 Query 296 CLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNV 355 LHVVGP+ G+D+ LL + Y + + +L PL+SAGIFG SL V V Sbjct 1020 ILHVVGPDKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLVKNVACTT 1079 Query 356 YLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEE 392 Y+ V+D+ LY++ +++ ++ + Q + I E Sbjct 1080 YVVVYDRQLYERALATSFDVPGPQSSVQHVPAIDWAE 1116 >sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=1a PE=1 SV=1 Length=4391 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/1608 (30%), Positives = 783/1608 (49%), Gaps = 139/1608 (9%) Query 441 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 494 I G ++ S V ++ P VGD V+ +G A VV P +A + Sbjct 1156 IAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSL 1215 Query 495 LAK---ALRKVPTDNYITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIIS 543 L+K A+ P +T G+ G Y + EAKT + ++ + S+ Sbjct 1216 LSKCYKAMNAYPL--VVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI 1273 Query 544 NEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGAR 603 + + L LR + A++ + VC + A ++ K + VD G + Sbjct 1274 VDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-GVQ 1332 Query 604 FYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPD 663 +Y YTSK T+ ++ N + +++MPLGYV+HGL+L +A +R + VP +++ + Sbjct 1333 YYCYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKE 1391 Query 664 AVTAYNGYLTSSSK--TPEEHFIETISLAGSYKDWSYSG-----QSTQLGIEFLKRGDKS 716 L S P E FI+ + G Y W Q +L + L D++ Sbjct 1392 Q----EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLN-KLLHWSDQT 1446 Query 717 VYYTSNPTTFHLDGEVITFDNLKTLLSLREVRT-----IKVFTTVDNINLHTQVVDMSMT 771 + Y + + F+ L + + RT I+V TVD +N T V++ T Sbjct 1447 ICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKNT 1506 Query 772 YGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYMS 830 Y Q G + +GAD++ P G + Y+ N +A E Y DP+FL R+ S Sbjct 1507 YRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFYS 1566 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEA 889 KWK + + S+K +DNNCYL ++TL + ++KF PALQ A+ + + G++ Sbjct 1567 LKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDS 1626 Query 890 ANFCALILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVE 948 +F ALI+AY N T G D + + A L S + V C CG + L+G++ Sbjct 1627 TDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLK 1686 Query 949 AVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGT---FTC 1005 A Y+G + E + + C CG + + +V+ +P++++S P + + T F Sbjct 1687 ACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFVA 1746 Query 1006 ASEYTG-NYQCGHYKHITSKETLYC-IDGALLTKSSEYKGPITDVFYKENSYTTTIKPVT 1063 + + G GHY H K L D ++K+S++K +TDV + Y++ V Sbjct 1747 FNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVVR 1806 Query 1064 YKLDGVVCTEIDPKLDNYYKKDNSYFT-EQPIDLVPNQPYPNASFDNFKFVCDNIKFADD 1122 Y LDG TE+DP L +Y KD YFT E P+ P + + N V + + D Sbjct 1807 YSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGGD 1866 Query 1123 -----LNQLTGY--KKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWH 1175 N L G+ KP +++ +F P +GDV+ ++ Y P +K GA KPI+W Sbjct 1867 AISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILW- 1925 Query 1176 VNNATNKATY-----KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVS 1230 NKA+Y K N +R ++ P+E N F L E PV Sbjct 1926 ----VNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVEST------------PVE 1969 Query 1231 EEVVENPTIQKD--VLECNVKTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVD-NSS 1286 V+ +Q++ +++C V D + A++S + E + DL YVD Sbjct 1970 PPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQ 2029 Query 1287 LTIKKPNELSRVLGLKTLATHGL---AAVNSVPWDTIANYAKPFLNK----VVSTTTNIV 1339 + + K N LS +L L T+ + + AA S+ + F K T T V Sbjct 2030 VIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAV 2089 Query 1340 TRCLNRV-------------CTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTT---IAKN 1383 C+ V C +++ F L L + ++ + +K S T + N Sbjct 2090 GSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGN 2149 Query 1384 TVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSN----- 1438 VK ++ S + L+ ++ + +++ V L S+ + VL S+ Sbjct 2150 VVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFED 2209 Query 1439 --------------LGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTY 1483 LG+ S C G Y + + + T+C S C+ CL DS+ Y Sbjct 2210 AQGLKKFYKEVRAYLGISSACDGLASAY-RANSFDVPTFCANRSAMCNWCLISQDSITHY 2268 Query 1484 PSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISN 1543 P+L+ +Q +S + ++ E LAY+L+T F L LA + FF+ ++ Sbjct 2269 PALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWR 2328 Query 1544 SW------LMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKR 1597 S+ WL ++ P++ +VRMY A + + K Y HV++GC + C++CYKR Sbjct 2329 SYNYAVSSAFWLFTHI----PMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKR 2384 Query 1598 NRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSL 1657 NR TRVE +T+V G +R+FY+ ANGG FC+ HNWNCV+CDT G+TFI +EVA DL+ Sbjct 2385 NRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTT 2444 Query 1658 QFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLR----ANN 1713 +RPIN TD+S Y VDSVTVK + + + GQ YER L F NLD L+ Sbjct 2445 ALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKT 2504 Query 1714 TKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMF 1773 T G N I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ VGDS+E+A KMF Sbjct 2505 TTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMF 2564 Query 1774 DAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKD 1832 D++VN+F S +NV +KL+ L++TA + + + +VL+TFI AAR V+SDVET + Sbjct 2565 DSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNE 2624 Query 1833 VVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIA 1892 +V+ ++ +H+ DI++T +S NNY+ +Y K ++++ DLG+ IDC+A +N V ++ N A Sbjct 2625 IVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGA 2684 Query 1893 LIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 1940 IWN +M LS+ L++QIR A +K NL F+LT + R N+++ + Sbjct 2685 CIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRF 2732 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 131/418 (31%), Positives = 199/418 (48%), Gaps = 57/418 (14%) Query 4 KVTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYTVELGTEVNEFACVVADAVI 62 KV FG D V EV +SV + + + +D +L + + V+ + EFA VV + V Sbjct 858 KVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKEQVS 917 Query 63 KTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE-- 120 L + + DLD++ A Y F+ G+ +S M S +P + DEE + E Sbjct 918 DLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVEASD 977 Query 121 -EEFEPSTQYEYGTE----------DDY-----QGKPL-EFGATSAALQPEEEQEEDWLD 163 EE E E TE D++ + PL E + ++Q E + E ++ Sbjct 978 LEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLDEAEDVTESVQEEAQPVEVPVE 1037 Query 164 DDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEM-------------ELTPVV-----QTI 205 D +Q + +T + VEV PQ+ E+ PV QT Sbjct 1038 DIAQVVIADTL----QETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQTQ 1093 Query 206 EVNSFSGYLK---------------LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHG 250 V L+ +T+ V I D ++ AK +V+VNAAN +LKHG Sbjct 1094 SVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHG 1153 Query 251 GGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDI 310 GG+AGA+N A+ A+Q ESD+YI GPL+VG S +L GH+LAK+ LHVVGP+ +D+ Sbjct 1154 GGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDV 1213 Query 311 QLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL 368 LL Y+ N + +++ PL+SAGIFG P S + +T V + V +++Y L Sbjct 1214 SLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSL 1271 >sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/1608 (30%), Positives = 783/1608 (49%), Gaps = 139/1608 (9%) Query 441 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 494 I G ++ S V ++ P VGD V+ +G A VV P +A + Sbjct 1156 IAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSL 1215 Query 495 LAK---ALRKVPTDNYITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIIS 543 L+K A+ P +T G+ G Y + EAKT + ++ + S+ Sbjct 1216 LSKCYKAMNAYPL--VVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI 1273 Query 544 NEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGAR 603 + + L LR + A++ + VC + A ++ K + VD G + Sbjct 1274 VDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-GVQ 1332 Query 604 FYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPD 663 +Y YTSK T+ ++ N + +++MPLGYV+HGL+L +A +R + VP +++ + Sbjct 1333 YYCYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKE 1391 Query 664 AVTAYNGYLTSSSK--TPEEHFIETISLAGSYKDWSYSG-----QSTQLGIEFLKRGDKS 716 L S P E FI+ + G Y W Q +L + L D++ Sbjct 1392 Q----EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLN-KLLHWSDQT 1446 Query 717 VYYTSNPTTFHLDGEVITFDNLKTLLSLREVRT-----IKVFTTVDNINLHTQVVDMSMT 771 + Y + + F+ L + + RT I+V TVD +N T V++ T Sbjct 1447 ICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKNT 1506 Query 772 YGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYMS 830 Y Q G + +GAD++ P G + Y+ N +A E Y DP+FL R+ S Sbjct 1507 YRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFYS 1566 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEA 889 KWK + + S+K +DNNCYL ++TL + ++KF PALQ A+ + + G++ Sbjct 1567 LKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDS 1626 Query 890 ANFCALILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVE 948 +F ALI+AY N T G D + + A L S + V C CG + L+G++ Sbjct 1627 TDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLK 1686 Query 949 AVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGT---FTC 1005 A Y+G + E + + C CG + + +V+ +P++++S P + + T F Sbjct 1687 ACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFVA 1746 Query 1006 ASEYTG-NYQCGHYKHITSKETLYC-IDGALLTKSSEYKGPITDVFYKENSYTTTIKPVT 1063 + + G GHY H K L D ++K+S++K +TDV + Y++ V Sbjct 1747 FNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVVR 1806 Query 1064 YKLDGVVCTEIDPKLDNYYKKDNSYFT-EQPIDLVPNQPYPNASFDNFKFVCDNIKFADD 1122 Y LDG TE+DP L +Y KD YFT E P+ P + + N V + + D Sbjct 1807 YSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGGD 1866 Query 1123 -----LNQLTGY--KKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWH 1175 N L G+ KP +++ +F P +GDV+ ++ Y P +K GA KPI+W Sbjct 1867 AISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILW- 1925 Query 1176 VNNATNKATY-----KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVS 1230 NKA+Y K N +R ++ P+E N F L E PV Sbjct 1926 ----VNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVEST------------PVE 1969 Query 1231 EEVVENPTIQKD--VLECNVKTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVD-NSS 1286 V+ +Q++ +++C V D + A++S + E + DL YVD Sbjct 1970 PPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQ 2029 Query 1287 LTIKKPNELSRVLGLKTLATHGL---AAVNSVPWDTIANYAKPFLNK----VVSTTTNIV 1339 + + K N LS +L L T+ + + AA S+ + F K T T V Sbjct 2030 VIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAV 2089 Query 1340 TRCLNRV-------------CTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTT---IAKN 1383 C+ V C +++ F L L + ++ + +K S T + N Sbjct 2090 GSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGN 2149 Query 1384 TVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSN----- 1438 VK ++ S + L+ ++ + +++ V L S+ + VL S+ Sbjct 2150 VVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFED 2209 Query 1439 --------------LGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTY 1483 LG+ S C G Y + + + T+C S C+ CL DS+ Y Sbjct 2210 AQGLKKFYKEVRAYLGISSACDGLASAY-RANSFDVPTFCANRSAMCNWCLISQDSITHY 2268 Query 1484 PSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISN 1543 P+L+ +Q +S + ++ E LAY+L+T F L LA + FF+ ++ Sbjct 2269 PALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWR 2328 Query 1544 SW------LMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKR 1597 S+ WL ++ P++ +VRMY A + + K Y HV++GC + C++CYKR Sbjct 2329 SYNYAVSSAFWLFTHI----PMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKR 2384 Query 1598 NRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSL 1657 NR TRVE +T+V G +R+FY+ ANGG FC+ HNWNCV+CDT G+TFI +EVA DL+ Sbjct 2385 NRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTT 2444 Query 1658 QFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLR----ANN 1713 +RPIN TD+S Y VDSVTVK + + + GQ YER L F NLD L+ Sbjct 2445 ALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKT 2504 Query 1714 TKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMF 1773 T G N I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ VGDS+E+A KMF Sbjct 2505 TTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMF 2564 Query 1774 DAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKD 1832 D++VN+F S +NV +KL+ L++TA + + + +VL+TFI AAR V+SDVET + Sbjct 2565 DSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNE 2624 Query 1833 VVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIA 1892 +V+ ++ +H+ DI++T +S NNY+ +Y K ++++ DLG+ IDC+A +N V ++ N A Sbjct 2625 IVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGA 2684 Query 1893 LIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 1940 IWN +M LS+ L++QIR A +K NL F+LT + R N+++ + Sbjct 2685 CIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRF 2732 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 131/418 (31%), Positives = 199/418 (48%), Gaps = 57/418 (14%) Query 4 KVTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYTVELGTEVNEFACVVADAVI 62 KV FG D V EV +SV + + + +D +L + + V+ + EFA VV + V Sbjct 858 KVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKEQVS 917 Query 63 KTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE-- 120 L + + DLD++ A Y F+ G+ +S M S +P + DEE + E Sbjct 918 DLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVEASD 977 Query 121 -EEFEPSTQYEYGTE----------DDY-----QGKPL-EFGATSAALQPEEEQEEDWLD 163 EE E E TE D++ + PL E + ++Q E + E ++ Sbjct 978 LEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLDEAEDVTESVQEEAQPVEVPVE 1037 Query 164 DDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEM-------------ELTPVV-----QTI 205 D +Q + +T + VEV PQ+ E+ PV QT Sbjct 1038 DIAQVVIADTL----QETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQTQ 1093 Query 206 EVNSFSGYLK---------------LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHG 250 V L+ +T+ V I D ++ AK +V+VNAAN +LKHG Sbjct 1094 SVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHG 1153 Query 251 GGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDI 310 GG+AGA+N A+ A+Q ESD+YI GPL+VG S +L GH+LAK+ LHVVGP+ +D+ Sbjct 1154 GGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDV 1213 Query 311 QLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL 368 LL Y+ N + +++ PL+SAGIFG P S + +T V + V +++Y L Sbjct 1214 SLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSL 1271 >sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus (strain Mebus) OX=11132 GN=1a PE=3 SV=1 Length=4383 Score = 508 bits (1308), Expect = 1e-145, Method: Compositional matrix adjust. Identities = 365/1233 (30%), Positives = 605/1233 (49%), Gaps = 84/1233 (7%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1050 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1106 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1107 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK + + D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTV--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1166 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 1223 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 1224 EDLK-PVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 1282 D K P +++ ++K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL 2079 Query 1283 DNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 1338 ++ N LSR + + T+ G+ V S+P D + KP N VV N Sbjct 2080 TGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNK 2137 Query 1339 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 1398 ++ C N ++ + F LL + K T +A + + +F Sbjct 2138 ISACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFL 2188 Query 1399 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 1442 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLV 2248 Query 1443 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 1502 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 1503 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 1553 F +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSL 2359 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDAMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 V + L++D+ GQ+TY+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2658 NNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLK 2717 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V+V+TT +LKGG Sbjct 2718 KACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 333 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query 19 KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPL 75 K++ + +ELD+ + +LN C + V+ ++ EF VV DA+ + L P EL + Sbjct 871 KTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKV 930 Query 76 GIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 L + + +LFDE+GE LA +YC+F P++D+ Sbjct 931 SAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDD 968 >sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1 Length=4383 Score = 508 bits (1308), Expect = 1e-145, Method: Compositional matrix adjust. Identities = 368/1232 (30%), Positives = 602/1232 (49%), Gaps = 82/1232 (7%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + + TVD +N + V + +G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1050 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1106 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1107 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK + I D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTI--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1166 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 1223 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 1224 EDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVD 1283 D K E+ I L K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAK-------ESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLT 2080 Query 1284 NSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIV 1339 ++ N+LS + + T+ G+ V S+P D + KP N VV N + Sbjct 2081 GCRYVVRTANDLSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKI 2138 Query 1340 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 1399 + C N ++ + F LL + K T +A + + +F Sbjct 2139 SACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLT 2189 Query 1400 LKSPNFSKLINII--IWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTN 1457 K ++ II I+ L + ++I+S L +G G ++ ST Sbjct 2190 FKWSVVARGACIIATIFLLWFNFIYANVIFSDFYL----PKIGFLPTFVGKIAQWIKSTF 2245 Query 1458 --VTIA------------TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAF 1503 VTI YC GSI C CL+G D LD Y +++ +Q ++ D AF Sbjct 2246 SLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRAF 2300 Query 1504 -------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLV 1554 +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLA 2360 Query 1555 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 1614 M P +R YI ASF ++ + HV GC+ C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 1615 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 1674 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 1675 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1734 V + L++++ GQ+TY+ + S FV+ NL + KG ++V+V + + +++ Sbjct 2481 DVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKA 2538 Query 1735 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 1794 + +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L L Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 1795 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 1853 +ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 1854 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 1913 N + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2659 NLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKK 2718 Query 1914 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V+V+TT +LKGG Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 333 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + T V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/118 (34%), Positives = 66/118 (56%), Gaps = 5/118 (4%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVV 910 Query 59 DAVIKTLQPVSELL---TPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 DA+ + L P EL + L + + +LFDE+GE LAS +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDD 968 >sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1 Length=4383 Score = 507 bits (1306), Expect = 2e-145, Method: Compositional matrix adjust. Identities = 368/1232 (30%), Positives = 603/1232 (49%), Gaps = 82/1232 (7%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1050 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1106 Y +N T K V TY LD V E +P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1107 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK + I D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTI--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1166 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 1223 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 1224 EDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVD 1283 D K E+ I L K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAK-------ESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLT 2080 Query 1284 NSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIV 1339 ++ N LS + + T+ G+ V S+P D + KP N VV N + Sbjct 2081 GCRYVVRTANALSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKI 2138 Query 1340 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 1399 + C N ++ + F LL + K T +A + + +F Sbjct 2139 SACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLT 2189 Query 1400 LKSPNFSKLINII--IWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTN 1457 K ++ II I+ L + ++I+S L +G G ++ ST Sbjct 2190 FKWSVVARGACIIATIFLLWFNFIYANVIFSDFYL----PKIGFLPTFVGKIAQWIKSTF 2245 Query 1458 --VTIA------------TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAF 1503 VTI YC GSI C CL+G D LD Y +++ +Q ++ D AF Sbjct 2246 SLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRAF 2300 Query 1504 -------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLV 1554 +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLA 2360 Query 1555 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 1614 M P +R YI ASF ++ + HV GC+ C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 1615 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 1674 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 1675 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1734 V + L++++ GQ+TY+ + S FV+ NL + KG ++V+V + + +++ Sbjct 2481 DVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKA 2538 Query 1735 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 1794 + +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L L Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 1795 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 1853 +ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 1854 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 1913 N + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2659 NLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKK 2718 Query 1914 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V+V+TT +LKGG Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 333 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + T V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/118 (34%), Positives = 66/118 (56%), Gaps = 5/118 (4%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSELL---TPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 DA+ + L P EL + L + + +LFDE+GE LAS +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDD 968 >sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 508 bits (1307), Expect = 2e-145, Method: Compositional matrix adjust. Identities = 365/1233 (30%), Positives = 605/1233 (49%), Gaps = 84/1233 (7%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1050 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1106 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1107 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK + + D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTV--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1166 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 1223 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 1224 EDLK-PVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 1282 D K P +++ ++K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL 2079 Query 1283 DNSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 1338 ++ N LSR + + T+ G+ V S+P D + KP N VV N Sbjct 2080 TGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNK 2137 Query 1339 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 1398 ++ C N ++ + F LL + K T +A + + +F Sbjct 2138 ISACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFL 2188 Query 1399 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 1442 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLV 2248 Query 1443 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 1502 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 1503 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 1553 F +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSL 2359 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDAMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 V + L++D+ GQ+TY+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2658 NNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLK 2717 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V+V+TT +LKGG Sbjct 2718 KACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 333 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query 19 KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPL 75 K++ + +ELD+ + +LN C + V+ ++ EF VV DA+ + L P EL + Sbjct 871 KTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKV 930 Query 76 GIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 L + + +LFDE+GE LA +YC+F P++D+ Sbjct 931 SAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDD 968 >sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 506 bits (1304), Expect = 5e-145, Method: Compositional matrix adjust. Identities = 368/1232 (30%), Positives = 602/1232 (49%), Gaps = 82/1232 (7%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + + TVD +N + V + +G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1050 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1106 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1107 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK + I D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTI--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1166 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 1223 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 1224 EDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVD 1283 D K E+ I L K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAK-------ESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLT 2080 Query 1284 NSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIV 1339 ++ N+LS + + T+ G+ V S+P D + KP N VV N + Sbjct 2081 GCRYVVRTANDLSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKI 2138 Query 1340 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 1399 + C N ++ + F LL + K T +A + + +F Sbjct 2139 SACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLT 2189 Query 1400 LKSPNFSKLINII--IWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTN 1457 K ++ II I+ L + ++I+S L +G G ++ ST Sbjct 2190 FKWSVVARGACIIATIFLLWFNFIYANVIFSDFYL----PKIGFLPTFVGKIAQWIKSTF 2245 Query 1458 --VTIA------------TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAF 1503 VTI YC GSI C CL+G D LD Y +++ +Q ++ D AF Sbjct 2246 SLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRAF 2300 Query 1504 -------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLV 1554 +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLA 2360 Query 1555 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 1614 M P +R YI ASF ++ + HV GC+ C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 1615 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 1674 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 1675 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1734 V + L++++ GQ+TY+ + S FV+ NL + KG ++V+V + + +++ Sbjct 2481 DVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKA 2538 Query 1735 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 1794 + +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L L Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 1795 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 1853 +ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 1854 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 1913 N + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2659 NLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKK 2718 Query 1914 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V+V+TT +LKGG Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 333 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + T V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/118 (34%), Positives = 66/118 (56%), Gaps = 5/118 (4%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVV 910 Query 59 DAVIKTLQPVSELL---TPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 DA+ + L P EL + L + + +LFDE+GE LAS +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDD 968 >sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus (strain Quebec) OX=11133 GN=1a PE=3 SV=1 Length=4383 Score = 506 bits (1303), Expect = 6e-145, Method: Compositional matrix adjust. Identities = 364/1233 (30%), Positives = 605/1233 (49%), Gaps = 84/1233 (7%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1050 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1106 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1107 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK + + D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTV--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1166 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 1223 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 1224 EDLK-PVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 1282 D K P +++ ++K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL 2079 Query 1283 DNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 1338 ++ N LSR + + T+ G+ V S+P D + KP N VV N Sbjct 2080 TGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNK 2137 Query 1339 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 1398 ++ C N ++ + F LL + K T +A + + +F Sbjct 2138 ISACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFL 2188 Query 1399 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 1442 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSLV 2248 Query 1443 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 1502 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 1503 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 1553 F +V E ++Y L+T +FY L +Q+ ++ + ++ W + L+++L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHWSVRLLVSL 2359 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 V + L++D+ GQ+TY+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2658 NNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLK 2717 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L +LT V+V+TT +LKGG Sbjct 2718 KACCKTGLKLELTYNKQMANVSVLTTPFSLKGG 2750 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 333 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query 19 KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPL 75 K++ + +ELD+ + +LN C + V+ ++ EF VV DA+ + L P EL + Sbjct 871 KTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKV 930 Query 76 GIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 L + + +LFDE+GE LA +YC+F P++D+ Sbjct 931 SAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDD 968 >sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 506 bits (1303), Expect = 6e-145, Method: Compositional matrix adjust. Identities = 368/1232 (30%), Positives = 603/1232 (49%), Gaps = 82/1232 (7%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1050 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1106 Y +N T K V TY LD V E +P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1107 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK + I D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTI--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1166 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 1223 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 1224 EDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVD 1283 D K E+ I L K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAK-------ESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLT 2080 Query 1284 NSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIV 1339 ++ N LS + + T+ G+ V S+P D + KP N VV N + Sbjct 2081 GCRYVVRTANALSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKI 2138 Query 1340 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 1399 + C N ++ + F LL + K T +A + + +F Sbjct 2139 SACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLT 2189 Query 1400 LKSPNFSKLINII--IWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTN 1457 K ++ II I+ L + ++I+S L +G G ++ ST Sbjct 2190 FKWSVVARGACIIATIFLLWFNFIYANVIFSDFYL----PKIGFLPTFVGKIAQWIKSTF 2245 Query 1458 --VTIA------------TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAF 1503 VTI YC GSI C CL+G D LD Y +++ +Q ++ D AF Sbjct 2246 SLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRAF 2300 Query 1504 -------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLV 1554 +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLA 2360 Query 1555 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 1614 M P +R YI ASF ++ + HV GC+ C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 1615 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 1674 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 1675 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1734 V + L++++ GQ+TY+ + S FV+ NL + KG ++V+V + + +++ Sbjct 2481 DVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKA 2538 Query 1735 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 1794 + +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L L Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 1795 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 1853 +ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 1854 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 1913 N + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2659 NLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKK 2718 Query 1914 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V+V+TT +LKGG Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 333 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + T V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/118 (34%), Positives = 66/118 (56%), Gaps = 5/118 (4%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSELL---TPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 DA+ + L P EL + L + + +LFDE+GE LAS +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDD 968 >sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 505 bits (1301), Expect = 1e-144, Method: Compositional matrix adjust. Identities = 364/1233 (30%), Positives = 605/1233 (49%), Gaps = 84/1233 (7%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1050 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1106 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1107 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK + + D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTV--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1166 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 1223 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 1224 EDLK-PVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 1282 D K P +++ ++K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL 2079 Query 1283 DNSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 1338 ++ N LSR + + T+ G+ V S+P D + KP N VV N Sbjct 2080 TGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNK 2137 Query 1339 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 1398 ++ C N ++ + F LL + K T +A + + +F Sbjct 2138 ISACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFL 2188 Query 1399 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 1442 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSLV 2248 Query 1443 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 1502 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 1503 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 1553 F +V E ++Y L+T +FY L +Q+ ++ + ++ W + L+++L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHWSVRLLVSL 2359 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 V + L++D+ GQ+TY+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2658 NNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLK 2717 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L +LT V+V+TT +LKGG Sbjct 2718 KACCKTGLKLELTYNKQMANVSVLTTPFSLKGG 2750 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 333 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query 19 KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPL 75 K++ + +ELD+ + +LN C + V+ ++ EF VV DA+ + L P EL + Sbjct 871 KTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKV 930 Query 76 GIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 L + + +LFDE+GE LA +YC+F P++D+ Sbjct 931 SAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDD 968 >sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus OC43 OX=31631 GN=1a PE=1 SV=1 Length=4383 Score = 500 bits (1288), Expect = 3e-143, Method: Compositional matrix adjust. Identities = 363/1233 (29%), Positives = 599/1233 (49%), Gaps = 84/1233 (7%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLH 1684 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 L F Q+A+ R+G A F AL+LA G+ D R+ + +F +L Sbjct 1685 LTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 + CK CG +Q G++AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S PA +L G + A+ + G+ GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFIGD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCL 1860 Query 1050 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1106 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1107 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK + + D LN G+ E K+T +P GDVV + Y +++G Sbjct 1920 YTNFKLIGHTV--CDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGC 1977 Query 1166 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 1223 KP++W H + N TY ++ + N FDVLK +D + + Sbjct 1978 ITFGKPVIWLSHEKASLNSLTY----------FNRPLLVDDNKFDVLKVDDVDDSGDSSE 2027 Query 1224 EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 1282 K E +++ ++K +V +I+ + K + + D+ ++ Sbjct 2028 SGAKETKEINIIKLSGVKKPF--------KVEDSVIVNDDTSETKYVKSLSIVDVYDMWL 2079 Query 1283 DNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 1338 ++ N LSR + + T+ G+ V S+P D + KP +N VV N Sbjct 2080 TGCKYVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPAVN-VVKAVRNK 2137 Query 1339 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 1398 + C N ++ + F LL + K T IA + + +F Sbjct 2138 TSACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEIASKLTCKLVALAFKNAFL 2188 Query 1399 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 1442 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLV 2248 Query 1443 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 1502 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 1503 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 1553 F +V E ++Y L+T +FY L +Q+ ++ F+ ++ W L++ L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVAL 2359 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 V S+ L++D+ GQ+ Y+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F S + +++ Sbjct 2658 NNLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLK 2717 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V+V+TT +LKGG Sbjct 2718 KACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV DI++ +K VK VVVN AN ++ HGGGVA A+ A E+ + + + Sbjct 1273 ITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKS 1332 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 333 G G V +G L K L+VVGP+ + LL+ Y++FN ++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISA 1392 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (52%), Gaps = 5/118 (4%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K + + +ELD + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSELL---TPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 DA+ + L P EL + L + +LFDE+GE A +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDD 968 >sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 499 bits (1286), Expect = 8e-143, Method: Compositional matrix adjust. Identities = 363/1233 (29%), Positives = 599/1233 (49%), Gaps = 84/1233 (7%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLH 1684 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 L F Q+A+ R+G A F AL+LA G+ D R+ + +F +L Sbjct 1685 LTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 + CK CG +Q G++AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S PA +L G + A+ + G+ GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFIGD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCL 1860 Query 1050 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1106 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1107 FDNFKFVCDNIKFADDLNQLTGYKKPASR-ELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK + + D LN G+ E K+T +P GDVV + Y +++G Sbjct 1920 YTNFKLIGHTV--CDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGC 1977 Query 1166 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 1223 KP++W H + N TY ++ + N FDVLK +D + + Sbjct 1978 ITFGKPVIWLSHEKASLNSLTY----------FNRPLLVDDNKFDVLKVDDVDDSGDSSE 2027 Query 1224 EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 1282 K E +++ ++K +V +I+ + K + + D+ ++ Sbjct 2028 SGAKETKEINIIKLSGVKKPF--------KVEDSVIVNDDTSETKYVKSLSIVDVYDMWL 2079 Query 1283 DNSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 1338 ++ N LSR + + T+ G+ V S+P D + KP +N VV N Sbjct 2080 TGCKYVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPAVN-VVKAVRNK 2137 Query 1339 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 1398 + C N ++ + F LL + K T IA + + +F Sbjct 2138 TSACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEIASKLTCKLVALAFKNAFL 2188 Query 1399 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 1442 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLV 2248 Query 1443 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 1502 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 1503 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 1553 F +V E ++Y L+T +FY L +Q+ ++ F+ ++ W L++ L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVAL 2359 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 V S+ L++D+ GQ+ Y+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F S + +++ Sbjct 2658 NNLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLK 2717 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V+V+TT +LKGG Sbjct 2718 KACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV DI++ +K VK VVVN AN ++ HGGGVA A+ A E+ + + + Sbjct 1273 ITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKS 1332 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 333 G G V +G L K L+VVGP+ + LL+ Y++FN ++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISA 1392 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (52%), Gaps = 5/118 (4%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K + + +ELD + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSELL---TPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 DA+ + L P EL + L + +LFDE+GE A +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDD 968 >sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 481 bits (1237), Expect = 1e-136, Method: Compositional matrix adjust. Identities = 364/1266 (29%), Positives = 587/1266 (46%), Gaps = 105/1266 (8%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1610 VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAA 1669 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 + A + D L +Y S L K W + K ++NNCY+ A L LQ + Sbjct 1670 DLAAVKDAFGFDEPQLLQYYSMLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1728 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF + R+G+ F +L+LA + E D + + + A+L Sbjct 1729 LKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCD 1788 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 L +CK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF++ Sbjct 1789 LEFICK-CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLV-HCTQFNVPFLIC 1846 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1847 SNTPEGKKLPDDVVA-ANIFTGG-SVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCL 1904 Query 1050 YKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNAS-- 1106 Y +N T + TY LD V C P L YY + Y+T +PI + + Sbjct 1905 YLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVEGV 1963 Query 1107 FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK V +I A+ LN G+ E K+T +P GDVV Y + G Sbjct 1964 YTNFKLVGHDI--AEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGC 2021 Query 1166 KLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD------------- 1208 KP++W H + TY +P+ C ++ PV+ S D Sbjct 2022 VTFGKPVIWRGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDRRPVPSAVLVTGA 2080 Query 1209 -------VLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVG------ 1255 + +E + AC V +++V + V VK ++ G Sbjct 2081 ASGADASAISTEPGTAKEQKACAS-DSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKPVK 2139 Query 1256 ---DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATH---GL 1309 +++ + K+ + + D+ ++ + NELSR++ T+ + G+ Sbjct 2140 WNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGM 2199 Query 1310 AAVNSVPWDTI--ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRS 1367 + + +P + + + + F+ V I C + +F F Sbjct 2200 SKL-IIPANLLLLRDEKQEFVAPKVVKAKAIA-------CYGAVKWFLLYCFSWIKF--- 2248 Query 1368 TNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIWF--LL 1417 N+ K T +A K K C A N L++ N+S + ++WF L Sbjct 2249 -NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLY 2304 Query 1418 LSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIATYCT 1465 +V L ++ + + + G+ + C Y+ GY +S +C Sbjct 2305 ANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSS-------FCN 2357 Query 1466 GSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRFFYV 1522 GS+ C +C SG D LD Y S+ +Q + SF + ++ F LV E + Y L+T FY Sbjct 2358 GSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDY-ISLFKLVVELVIGYSLYTVCFYP 2416 Query 1523 LGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L + MQL ++ F+ + W L + + M P ++R YI + Y V+ Sbjct 2417 LFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCR 2476 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC+++ Sbjct 2477 HVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSW 2536 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y+ S Sbjct 2537 KPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSA 2596 Query 1701 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 1760 S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P+L++++ L++ Sbjct 2597 SLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLMVEKKLIT 2654 Query 1761 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 1820 V+ MFD YV + +V + L + V A L + V L+ V+ TF+ AR Sbjct 2655 TANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCAR 2714 Query 1821 QGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 1879 + +DSDVETK + + + + + +EVT +SCNN + TY K + + DLG I +A+ Sbjct 2715 RKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAK 2774 Query 1880 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 1939 H+ + VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++TT Sbjct 2775 HVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTP 2834 Query 1940 IALKGG 1945 +LKGG Sbjct 2835 FSLKGG 2840 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 60/116 (52%), Gaps = 4/116 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V EV + + I F LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDED 112 AV TL P E + T + L+ YLFDE GE +AS MYCSF PDED Sbjct 892 AVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED 947 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/153 (34%), Positives = 82/153 (54%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA A E+ D + Sbjct 1319 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKA 1378 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNV--NKGEDIQLLKSAYENFNQHEVLLAPLLSA 333 G +VGG +G L K L++VGP+ + E LL+ AY++ N+ + ++ L+SA Sbjct 1379 QGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISA 1438 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + V NV L +++ +D Sbjct 1439 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFD 1471 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 86/217 (40%), Gaps = 33/217 (15%) Query 778 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLR-VEAFEYYHTTDPSFLGRYMSALNHTK 836 P ++ D+ K++ E +T P D T V AF+ ++ S S H K Sbjct 1047 PDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFK 1106 Query 837 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 896 V G S NC+L + L+ +Q + L+F +Q + +AG F + Sbjct 1107 ------VCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKL 1160 Query 897 LAYCNKTV-----GELGDVRETMSYLFQHANLDSC--KRVLNVVCKTCGQQQTTLKGVEA 949 + K++ G + D +Y F L C K N C CG + L+G++A Sbjct 1161 VKSAPKSIILPQGGYVAD----FAYFF----LSQCSFKVHANWRCLKCG-MELKLQGLDA 1211 Query 950 VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 V + G + V C CG T L+ + P+ Sbjct 1212 VFFYGDV--------VSHMCKCGNSMT--LLSADIPY 1238 >sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM) OX=11144 GN=1a PE=1 SV=1 Length=4474 Score = 480 bits (1236), Expect = 1e-136, Method: Compositional matrix adjust. Identities = 365/1274 (29%), Positives = 585/1274 (46%), Gaps = 121/1274 (9%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1610 VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAA 1669 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 + A + D L +Y S L K W + K ++NNCY+ A L LQ + Sbjct 1670 DLAAVKDAFGFDEPQLLQYYSMLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1728 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF + R+G+ F +L+LA + E D + + + A+L Sbjct 1729 LKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCD 1788 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 L +CK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF++ Sbjct 1789 LEFICK-CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLV-HCTQFNVPFLIC 1846 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1847 SNTPEGKKLPDDVVA-ANIFTGG-SVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCL 1904 Query 1050 YKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNAS-- 1106 Y +N T + TY LD V C P L YY + Y+T +PI + + Sbjct 1905 YLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVEGV 1963 Query 1107 FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK V +I A+ LN G+ E K+T +P GDVV Y + G Sbjct 1964 YTNFKLVGHDI--AEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGC 2021 Query 1166 KLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD------------- 1208 KP++W H + TY +P+ C ++ PV+ S D Sbjct 2022 VTFGKPVIWRGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDRRPVPSAVLVTGA 2080 Query 1209 -------VLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVG------ 1255 + +E + AC V +++V + V VK ++ G Sbjct 2081 ASGADASAISTEPGTAKEQKACAS-DSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKPVK 2139 Query 1256 ---DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAV 1312 +++ + K+ + + D+ ++ + NELSR+ + Sbjct 2140 WNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRL-------------I 2186 Query 1313 NSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLL 1359 NS T+ Y K ++K++ ++ R + C + +F Sbjct 2187 NS---PTVREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLYCF 2243 Query 1360 QLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------I 1411 F N+ K T +A K K C A N L++ N+S + Sbjct 2244 SWIKF----NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVF 2296 Query 1412 IIWF--LLLSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNSTN 1457 ++WF L +V L ++ + + + G+ + C Y+ GY +S Sbjct 2297 LLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSS-- 2354 Query 1458 VTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYI 1514 +C GS+ C +C SG D LD Y S+ +Q + SF + ++ F LV E + Y Sbjct 2355 -----FCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDY-ISLFKLVVELVIGYS 2408 Query 1515 LFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASF 1572 L+T FY L + MQL ++ F+ + W L + + M P ++R YI + Sbjct 2409 LYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAM 2468 Query 1573 YYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNW 1632 Y V+ HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H W Sbjct 2469 YKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQW 2528 Query 1633 NCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQ 1692 NC+NC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ Sbjct 2529 NCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQ 2588 Query 1693 KTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPIL 1752 + Y+ S S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P+L Sbjct 2589 RVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPML 2646 Query 1753 LLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVL 1812 ++++ L++ V+ MFD YV + +V + L + V A L + V L+ V+ Sbjct 2647 MVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQVM 2706 Query 1813 STFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLG 1871 TF+ AR+ +DSDVETK + + + + + +EVT +SCNN + TY K + + DLG Sbjct 2707 DTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLG 2766 Query 1872 ACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQ 1931 I +A+H+ + VAK+ N+A IW+V F LS L+ ++R A K L KLT Sbjct 2767 VLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEA 2826 Query 1932 VVNVVTTKIALKGG 1945 V ++TT +LKGG Sbjct 2827 NVPILTTPFSLKGG 2840 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 60/116 (52%), Gaps = 4/116 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V EV + + I F LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDED 112 AV TL P E + T + L+ YLFDE GE +AS MYCSF PDED Sbjct 892 AVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED 947 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/153 (34%), Positives = 82/153 (54%), Gaps = 2/153 (1%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA A E+ D + Sbjct 1319 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKA 1378 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNV--NKGEDIQLLKSAYENFNQHEVLLAPLLSA 333 G +VGG +G L K L++VGP+ + E LL+ AY++ N+ + ++ L+SA Sbjct 1379 QGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISA 1438 Query 334 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 GIF SL + V NV L +++ +D Sbjct 1439 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFD 1471 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 86/217 (40%), Gaps = 33/217 (15%) Query 778 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLR-VEAFEYYHTTDPSFLGRYMSALNHTK 836 P ++ D+ K++ E +T P D T V AF+ ++ S S H K Sbjct 1047 PDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFK 1106 Query 837 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 896 V G S NC+L + L+ +Q + L+F +Q + +AG F + Sbjct 1107 ------VCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKL 1160 Query 897 LAYCNKTV-----GELGDVRETMSYLFQHANLDSC--KRVLNVVCKTCGQQQTTLKGVEA 949 + K++ G + D +Y F L C K N C CG + L+G++A Sbjct 1161 VKSAPKSIILPQGGYVAD----FAYFF----LSQCSFKVHANWRCLKCG-MELKLQGLDA 1211 Query 950 VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 V + G + V C CG T L+ + P+ Sbjct 1212 VFFYGDV--------VSHMCKCGNSMT--LLSADIPY 1238 >sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1 Length=4441 Score = 478 bits (1230), Expect = 6e-136, Method: Compositional matrix adjust. Identities = 361/1233 (29%), Positives = 583/1233 (47%), Gaps = 79/1233 (6%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNG-LTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW VNG S + + NNCY+ A L LQ Sbjct 1680 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVV-VNGPFFSFEQSHNNCYVNVACLMLQ 1737 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1738 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1797 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1798 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1855 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1972 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKPASR-ELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1973 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2030 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL +D+ Sbjct 2031 KGCETFGKPVIWLCHDEASLNSLTY----------FNKPSFKSENRYSVLS------VDS 2074 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2075 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2134 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2135 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2190 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCL--E 1394 R + ++ + F + L FT + + N FCL + Sbjct 2191 IFKARAIEFY--GFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNL------FCLALK 2242 Query 1395 ASFNYLKSPNFSKLINII-----IWF--LLLSVCLGSL---------IYSTAALGVLMSN 1438 +F + F K ++ WF L ++V I+ + + + Sbjct 2243 NAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKAT 2302 Query 1439 LGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS--- 1495 G+ + C Y + + T + +C GS C +C SG D LDTY +++ +Q + Sbjct 2303 FGLVTICDFYSKLGVGFT----SHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVL 2358 Query 1496 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINL 1553 F + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2359 FDY-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFV 2417 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV Sbjct 2418 ANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVI 2477 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2478 RYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVV 2537 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + Sbjct 2538 TDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADR 2595 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + Sbjct 2596 ANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNN 2655 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 V A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ Sbjct 2656 FVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENY 2715 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ Sbjct 2716 NNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLK 2775 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V ++TT +LKGG Sbjct 2776 KACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2808 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 274 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 331 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 332 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 SAGIF SL + V V L +K +D Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1482 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 62/117 (53%), Gaps = 4/117 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 A+ L + + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 840 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 899 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1115 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1174 Query 900 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 K + + G V + + ++++ N C CG L G++AV + G + Sbjct 1175 IPKAIVLPQGGYVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDAVFFYGDI- 1229 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESP 985 V C CG T L+ + P Sbjct 1230 -------VSHVCKCGHNMT--LIAADLP 1248 >sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus (strain A59) OX=11142 GN=1a PE=1 SV=1 Length=4468 Score = 478 bits (1230), Expect = 6e-136, Method: Compositional matrix adjust. Identities = 372/1269 (29%), Positives = 592/1269 (47%), Gaps = 115/1269 (9%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + V TVD +N + V +G+ G + DG +VTK++ ++GK F+ + Sbjct 1611 VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEA 1670 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 + A + D L +Y + L K W + K ++NNCY+ A L LQ + Sbjct 1671 DLVAVKDAFGFDEPQLLKYYTMLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1729 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1730 LKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCN 1789 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 L VCK CG +Q KGV+AVM+ GTL +G I CTCG + + Q PF++ Sbjct 1790 LEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFLIC 1847 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S P +L A+ +TG GHY H+ K D + K SE KG TD Sbjct 1848 SNTPEGRKLPDDVVA-ANIFTGG-SVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCL 1905 Query 1050 YKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--NAS 1106 Y +N T + T+ LD V C E P L YY + Y+T +PI + + + Sbjct 1906 YLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVDGV 1964 Query 1107 FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK V +I A+ LN G+ E K+T +P GDVV Y + G Sbjct 1965 YTNFKLVGHSI--AEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGC 2022 Query 1166 KLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFDV-----------L 1210 KP+VW H + TY +P+ C ++ PV+ S D + Sbjct 2023 ITFGKPVVWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLVTGV 2081 Query 1211 KSEDAQGMDNLACEDLKPVSE--------EVVENPTIQ-KDVLECNV----KTTEVVGDI 1257 DA +A E S EV + P++ DV E + K +V G + Sbjct 2082 PGADASAGAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSV 2141 Query 1258 ILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 1317 ++ + K+ + + D+ ++ + NELSR+ VNS Sbjct 2142 VVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRL-------------VNS--- 2185 Query 1318 DTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLCTF 1364 T+ Y K + K+V+ ++ R + C + +F F Sbjct 2186 PTVREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWIKF 2245 Query 1365 TRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIW-- 1414 N+ K T +A K K C A N L++ N+S + ++W Sbjct 2246 ----NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFN 2298 Query 1415 FLLLSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIAT 1462 FL +V L + + + G+ + C Y+ GY +S Sbjct 2299 FLYANVILSDFYLPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS------- 2351 Query 1463 YCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRF 1519 +C GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T Sbjct 2352 FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDY-ISLFKLVVELVIGYSLYTVC 2410 Query 1520 FYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWK 1577 FY L + MQL ++ F+ + W L + + M P ++R YI + Y V+ Sbjct 2411 FYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYC 2470 Query 1578 SYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNC 1637 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC Sbjct 2471 LCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNC 2530 Query 1638 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYER 1697 +++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y+ Sbjct 2531 NSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDD 2590 Query 1698 HSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQA 1757 + S FV+++ L + KG +V+V + ++ +++ A+V+Y+Q + +P+L++++ Sbjct 2591 VNASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVEKK 2648 Query 1758 LVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFIS 1817 L++ V+ MFD YV++ + +V + L + V A L + V L+ V+ TFI Sbjct 2649 LITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIG 2708 Query 1818 AARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 1876 AR+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I Sbjct 2709 CARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQN 2768 Query 1877 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 1936 +A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++ Sbjct 2769 NAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPIL 2828 Query 1937 TTKIALKGG 1945 TT +LKGG Sbjct 2829 TTPFSLKGG 2837 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/252 (27%), Positives = 118/252 (47%), Gaps = 20/252 (8%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV D+++ + V V+VN AN + HG GVAGA+ + +A E+ D + Sbjct 1320 ITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKA 1379 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQHEVLLAPLLS 332 G +VG +G L K L++VGP+ +G Q LL+ AY++ N+ + ++ L+S Sbjct 1380 QGVCQVGECYESAGGKLCKKVLNIVGPDA-RGHGKQCYSLLERAYQHINKCDNVVTTLIS 1438 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1439 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQLAKNLCR 1498 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 +VK F+T + S+ ++C L+E + L ++ L ++ N + Sbjct 1499 DVK-FVTNACSSLFS--------ESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1549 Query 446 HPDSATLVSDID 457 P LV+ D Sbjct 1550 LPTDWRLVNKFD 1561 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/117 (38%), Positives = 62/117 (53%), Gaps = 4/117 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V ++ + + ITF LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 AV TL P E + T + LD + YLFDE G+ +A MYCSF PD+++ Sbjct 892 AVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDED 948 >sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 478 bits (1231), Expect = 7e-136, Method: Compositional matrix adjust. Identities = 372/1269 (29%), Positives = 592/1269 (47%), Gaps = 115/1269 (9%) Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 809 + V TVD +N + V +G+ G + DG +VTK++ ++GK F+ + Sbjct 1611 VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEA 1670 Query 810 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 869 + A + D L +Y + L K W + K ++NNCY+ A L LQ + Sbjct 1671 DLVAVKDAFGFDEPQLLKYYTMLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1729 Query 870 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 929 LKF Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1730 LKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCN 1789 Query 930 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 L VCK CG +Q KGV+AVM+ GTL +G I CTCG + + Q PF++ Sbjct 1790 LEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFLIC 1847 Query 990 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1049 S P +L A+ +TG GHY H+ K D + K SE KG TD Sbjct 1848 SNTPEGRKLPDDVVA-ANIFTGG-SVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCL 1905 Query 1050 YKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--NAS 1106 Y +N T + T+ LD V C E P L YY + Y+T +PI + + + Sbjct 1906 YLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVDGV 1964 Query 1107 FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1165 + NFK V +I A+ LN G+ E K+T +P GDVV Y + G Sbjct 1965 YTNFKLVGHSI--AEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGC 2022 Query 1166 KLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFDV-----------L 1210 KP+VW H + TY +P+ C ++ PV+ S D + Sbjct 2023 ITFGKPVVWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLVTGV 2081 Query 1211 KSEDAQGMDNLACEDLKPVSE--------EVVENPTIQ-KDVLECNV----KTTEVVGDI 1257 DA +A E S EV + P++ DV E + K +V G + Sbjct 2082 PGADASAGAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSV 2141 Query 1258 ILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 1317 ++ + K+ + + D+ ++ + NELSR+ VNS Sbjct 2142 VVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRL-------------VNS--- 2185 Query 1318 DTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLCTF 1364 T+ Y K + K+V+ ++ R + C + +F F Sbjct 2186 PTVREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWIKF 2245 Query 1365 TRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIW-- 1414 N+ K T +A K K C A N L++ N+S + ++W Sbjct 2246 ----NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFN 2298 Query 1415 FLLLSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIAT 1462 FL +V L + + + G+ + C Y+ GY +S Sbjct 2299 FLYANVILSDFYLPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS------- 2351 Query 1463 YCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRF 1519 +C GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T Sbjct 2352 FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDY-ISLFKLVVELVIGYSLYTVC 2410 Query 1520 FYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWK 1577 FY L + MQL ++ F+ + W L + + M P ++R YI + Y V+ Sbjct 2411 FYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYC 2470 Query 1578 SYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNC 1637 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC Sbjct 2471 LCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNC 2530 Query 1638 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYER 1697 +++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y+ Sbjct 2531 NSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDD 2590 Query 1698 HSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQA 1757 + S FV+++ L + KG +V+V + ++ +++ A+V+Y+Q + +P+L++++ Sbjct 2591 VNASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVEKK 2648 Query 1758 LVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFIS 1817 L++ V+ MFD YV++ + +V + L + V A L + V L+ V+ TFI Sbjct 2649 LITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIG 2708 Query 1818 AARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 1876 AR+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I Sbjct 2709 CARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQN 2768 Query 1877 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 1936 +A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++ Sbjct 2769 NAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPIL 2828 Query 1937 TTKIALKGG 1945 TT +LKGG Sbjct 2829 TTPFSLKGG 2837 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/252 (27%), Positives = 118/252 (47%), Gaps = 20/252 (8%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV D+++ + V V+VN AN + HG GVAGA+ + +A E+ D + Sbjct 1320 ITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKA 1379 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQHEVLLAPLLS 332 G +VG +G L K L++VGP+ +G Q LL+ AY++ N+ + ++ L+S Sbjct 1380 QGVCQVGECYESAGGKLCKKVLNIVGPDA-RGHGKQCYSLLERAYQHINKCDNVVTTLIS 1438 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1439 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQLAKNLCR 1498 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 +VK F+T + S+ ++C L+E + L ++ L ++ N + Sbjct 1499 DVK-FVTNACSSLFS--------ESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1549 Query 446 HPDSATLVSDID 457 P LV+ D Sbjct 1550 LPTDWRLVNKFD 1561 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/117 (38%), Positives = 62/117 (53%), Gaps = 4/117 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V ++ + + ITF LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 AV TL P E + T + LD + YLFDE G+ +A MYCSF PD+++ Sbjct 892 AVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDED 948 >sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1 Length=4471 Score = 477 bits (1228), Expect = 1e-135, Method: Compositional matrix adjust. Identities = 361/1233 (29%), Positives = 583/1233 (47%), Gaps = 79/1233 (6%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNG-LTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW VNG S + + NNCY+ A L LQ Sbjct 1710 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVV-VNGPFFSFEQSHNNCYVNVACLMLQ 1767 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1768 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1827 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1828 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1885 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 2002 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKPASR-ELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 2003 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2060 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL +D+ Sbjct 2061 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLS------VDS 2104 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2105 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2164 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2165 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2220 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCL--E 1394 R + ++ + F + L FT + + N FCL + Sbjct 2221 IFKARAIEFY--GFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNL------FCLALK 2272 Query 1395 ASFNYLKSPNFSKLINII-----IWF--LLLSVCLGSL---------IYSTAALGVLMSN 1438 +F + F K ++ WF L ++V I+ + + + Sbjct 2273 NAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKAT 2332 Query 1439 LGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS--- 1495 G+ + C Y + + T + +C GS C +C SG D LDTY +++ +Q + Sbjct 2333 FGLVTICDFYSKLGVGFT----SHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVL 2388 Query 1496 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINL 1553 F + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2389 FDY-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFV 2447 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV Sbjct 2448 ANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVI 2507 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2508 RYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVV 2567 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + Sbjct 2568 TDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADR 2625 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + Sbjct 2626 ANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNN 2685 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 V A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ Sbjct 2686 FVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENY 2745 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ Sbjct 2746 NNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLK 2805 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V ++TT +LKGG Sbjct 2806 KACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2838 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1358 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1417 Query 274 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 331 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1418 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1477 Query 332 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 SAGIF SL + V V L +K +D Sbjct 1478 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1512 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 62/117 (53%), Gaps = 4/117 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 A+ L E + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 840 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 899 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1145 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1204 Query 900 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 K + + G V + + ++++ N C CG L G++A+ + G + Sbjct 1205 IPKAIVLPQGGFVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDALFFYGDI- 1259 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESP 985 V C CG T L+ + P Sbjct 1260 -------VSHVCKCGHNMT--LIAADLP 1278 >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 477 bits (1228), Expect = 1e-135, Method: Compositional matrix adjust. Identities = 360/1231 (29%), Positives = 583/1231 (47%), Gaps = 75/1231 (6%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNG-LTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW VNG S + + NNCY+ A L LQ Sbjct 1710 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVV-VNGPFFSFEQSHNNCYVNVACLMLQ 1767 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1768 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1827 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1828 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1885 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 2002 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKPASR-ELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 2003 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2060 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL +D+ Sbjct 2061 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLS------VDS 2104 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2105 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2164 Query 1280 AYVDNSSLTIKKPNELSRVLG---LKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ ++ +G+ + ++P D + N+ + Sbjct 2165 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2220 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 1396 R + ++ + F + L FT T IA ++ L+ + Sbjct 2221 IFKARAIEFY--GFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNA 2274 Query 1397 FNYLKSPNFSKLINII-----IWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 1440 F + F K ++ WF L ++V I+ + + + G Sbjct 2275 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2334 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS---FK 1497 + + C Y + + T + +C GS C +C SG D LDTY +++ +Q + F Sbjct 2335 LVTICDFYSKLGVGFT----SHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2390 Query 1498 WDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQ 1555 + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2391 Y-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVAN 2449 Query 1556 MAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRS 1615 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R Sbjct 2450 MLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRY 2509 Query 1616 FYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDS 1675 + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2510 YDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTD 2569 Query 1676 VTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESS 1735 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V + S + ++ Sbjct 2570 IKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVE--SDADRAN 2627 Query 1736 AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLV 1795 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2628 FLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFV 2687 Query 1796 ATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNN 1854 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2688 NIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNN 2747 Query 1855 YMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSA 1914 + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ A Sbjct 2748 LVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKA 2807 Query 1915 AKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 K L KLT V ++TT +LKGG Sbjct 2808 CVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2838 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1358 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1417 Query 274 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 331 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1418 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1477 Query 332 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 SAGIF SL + V V L +K +D Sbjct 1478 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1512 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 62/117 (53%), Gaps = 4/117 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 A+ L E + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 840 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 899 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1145 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1204 Query 900 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 K + + G V + + ++++ N C CG L G++A+ + G + Sbjct 1205 IPKAIVLPQGGFVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDALFFYGDI- 1259 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESP 985 V C CG T L+ + P Sbjct 1260 -------VSHVCKCGHNMT--LIAADLP 1278 >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 477 bits (1228), Expect = 1e-135, Method: Compositional matrix adjust. Identities = 361/1233 (29%), Positives = 583/1233 (47%), Gaps = 79/1233 (6%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNG-LTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW VNG S + + NNCY+ A L LQ Sbjct 1680 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVV-VNGPFFSFEQSHNNCYVNVACLMLQ 1737 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1738 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1797 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1798 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1855 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1972 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKPASR-ELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1973 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2030 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL +D+ Sbjct 2031 KGCETFGKPVIWLCHDEASLNSLTY----------FNKPSFKSENRYSVLS------VDS 2074 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2075 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2134 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2135 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2190 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCL--E 1394 R + ++ + F + L FT + + N FCL + Sbjct 2191 IFKARAIEFY--GFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNL------FCLALK 2242 Query 1395 ASFNYLKSPNFSKLINII-----IWF--LLLSVCLGSL---------IYSTAALGVLMSN 1438 +F + F K ++ WF L ++V I+ + + + Sbjct 2243 NAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKAT 2302 Query 1439 LGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS--- 1495 G+ + C Y + + T + +C GS C +C SG D LDTY +++ +Q + Sbjct 2303 FGLVTICDFYSKLGVGFT----SHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVL 2358 Query 1496 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINL 1553 F + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2359 FDY-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFV 2417 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV Sbjct 2418 ANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVI 2477 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2478 RYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVV 2537 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V + S + Sbjct 2538 TDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVE--SDADR 2595 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + Sbjct 2596 ANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNN 2655 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 V A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ Sbjct 2656 FVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENY 2715 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ Sbjct 2716 NNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLK 2775 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V ++TT +LKGG Sbjct 2776 KACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2808 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 274 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 331 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 332 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 SAGIF SL + V V L +K +D Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1482 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 62/117 (53%), Gaps = 4/117 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 A+ L + + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 840 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 899 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1115 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1174 Query 900 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 K + + G V + + ++++ N C CG L G++AV + G + Sbjct 1175 IPKAIVLPQGGYVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDAVFFYGDI- 1229 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESP 985 V C CG T L+ + P Sbjct 1230 -------VSHVCKCGHNMT--LIAADLP 1248 >sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1 Length=4421 Score = 475 bits (1223), Expect = 4e-135, Method: Compositional matrix adjust. Identities = 361/1233 (29%), Positives = 582/1233 (47%), Gaps = 79/1233 (6%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNG-LTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW VNG S + + NNCY+ A L LQ Sbjct 1660 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVV-VNGPFFSFEQSHNNCYVNVACLMLQ 1717 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1718 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1777 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1778 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1835 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1047 DVFYKENSYTTTIKPVT-YKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N T +T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1952 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKPASR-ELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1953 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2010 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL +D+ Sbjct 2011 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLS------VDS 2054 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2055 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2114 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2115 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2170 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCL--E 1394 R + ++ + F + L FT + + N FCL + Sbjct 2171 IFKARAIEFY--GFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNL------FCLALK 2222 Query 1395 ASFNYLKSPNFSKLINII-----IWF--LLLSVCLGSL---------IYSTAALGVLMSN 1438 +F + F K ++ WF L ++V I+ + + + Sbjct 2223 NAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKAT 2282 Query 1439 LGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS--- 1495 G+ + C Y + + T + +C GS C +C SG D LDTY +++ +Q + Sbjct 2283 FGLVTICDFYSKLGVGFT----SHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVL 2338 Query 1496 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINL 1553 F + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2339 FDY-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFV 2397 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV Sbjct 2398 ANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVI 2457 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2458 RYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVV 2517 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + Sbjct 2518 TDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADR 2575 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + Sbjct 2576 ANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNN 2635 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 V A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ Sbjct 2636 FVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENY 2695 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I A+H+ VAK NI+ IW + F L+ L+ +++ Sbjct 2696 NNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLK 2755 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V ++TT +LKGG Sbjct 2756 KACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2788 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 274 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 331 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 332 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 SAGIF SL + V V L +K +D Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1462 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 62/117 (53%), Gaps = 4/117 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 A+ L E + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 840 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 899 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1095 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1154 Query 900 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 K + + G V + + ++++ N C CG L G++AV + G + Sbjct 1155 IPKAIVLPQGGYVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDAVFFYGDI- 1209 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESP 985 V C CG T L+ + P Sbjct 1210 -------VSHVCKCGHNMT--LIAADLP 1228 >sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus (strain 2) OX=76344 GN=1a PE=3 SV=1 Length=4416 Score = 475 bits (1223), Expect = 5e-135, Method: Compositional matrix adjust. Identities = 371/1288 (29%), Positives = 606/1288 (47%), Gaps = 120/1288 (9%) Query 731 EVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIK 790 +V + ++ LL+ + V TVD +N + V +G+ G + DG +VTK++ Sbjct 1543 KVASVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVR 1598 Query 791 PHNSHEGKTFYV---LPNDDTLRV-EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGL 846 H+GK F+ L D + V +AF + +P L +Y + L K W Sbjct 1599 CSAIHKGKVFFQYSGLSAADLVAVTDAFGF---DEPQLL-KYYNMLGMCK-WPVVVCGNY 1653 Query 847 TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGE 906 + K ++NNCY+ A L LQ + LKF+ Q+A+ R+G+ F +L+LA + E Sbjct 1654 FAFKQSNNNCYINVACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNE 1713 Query 907 LGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQ 966 D + M + + A+L VCK CG +Q KGV+AVM+ GTL KG Sbjct 1714 PSDSTDFMRVVLREADLSGATCDFEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYT 1772 Query 967 IPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKET 1026 I CTCG + + Q PF++ S P +L A+ +TG GHY H+ K Sbjct 1773 IACTCGNKLV-HCTQLNVPFLICSNKPEGKKLPDDVVA-ANIFTGG-SLGHYTHVKCKPK 1829 Query 1027 LYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKD 1085 D ++K SE KG TD Y +N T + K T+ LD V C E +P L YY + Sbjct 1830 YQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCES 1889 Query 1086 NSYFTEQPIDLVPNQPYPNAS--FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFF 1142 Y+T +PI + + + NFK V +I A+ N G+ E K+T + Sbjct 1890 GKYYT-KPIIKAQFRTFEKVEGVYTNFKLVGHSI--AEKFNAKLGFDCNSPFTEYKITEW 1946 Query 1143 PDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWST 1198 P GDVV Y + G KP++W H + TY +P+ C ++ Sbjct 1947 PTATGDVVLASDDLYVSRYSGGCVTFGKPVIWLGHEEASLKSLTYFNRPSVVCEN-KFNV 2005 Query 1199 KPVETSNSFD-------VLKSEDAQG-------------------MDNLACEDLKPVSEE 1232 PV+ S D VL + G +D + L +S Sbjct 2006 LPVDVSEPTDKGPVPAAVLVTGALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGA 2065 Query 1233 VVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKP 1292 V+ ++ + ++ K +V +++ + K+ + + D+ ++ + Sbjct 2066 TVDVKEVKLNGVK---KPIKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMA 2122 Query 1293 NELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNR------- 1345 NELSR+ VNS T+ Y K + K+V ++ R + Sbjct 2123 NELSRL-------------VNS---PTVREYVKWGMTKIVIPAKLVLLRDEKQEFVAPKV 2166 Query 1346 ------VCTNYMPYFFTLLLQLCTF--------TRSTNSRIKASMPTTIAKNTVKSVGKF 1391 C + + +FF F T S++ ++ KN +++ Sbjct 2167 VKAKVIACYSAVKWFFLYCFSWIKFNTDNKVIYTTEVASKLTFNLCCLAFKNALQTFNWN 2226 Query 1392 CLEASFNYLKSPNFSKLINIIIWFLLLS-VCLGSLIYSTAALGVLMS----NLGMPSYCT 1446 + F +L + F N + ++LS L ++ + +G +++ G+ + C Sbjct 2227 VVSRGF-FLVATVFLLWFNFLYANVILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFTLCD 2285 Query 1447 GYR---EGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDL 1500 Y+ GY +S +C GS+ C +C SG D LD Y ++ +Q + SF + + Sbjct 2286 LYQVSDVGYRSS-------FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDY-I 2337 Query 1501 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAP 1558 + F LV E + Y L+T FY L MQL ++ F+ + W + + M P Sbjct 2338 SLFKLVVELVIGYSLYTVCFYPLFGLIGMQLLTTWLPEFFMLETMHWSARFFVFVANMLP 2397 Query 1559 ISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYV 1618 ++R YI + Y ++ HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V Sbjct 2398 AFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRYYDV 2457 Query 1619 YANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTV 1678 ANGG GFC H WNC+NC F G+TFI+ E A DLS + KRP+NPTD + Y+V V Sbjct 2458 MANGGTGFCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTEVKQ 2517 Query 1679 KNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKS 1738 S+ L++++ GQ+ Y+ S S FV+++ L + KG +V+V + ++ +++ + Sbjct 2518 VGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLN 2575 Query 1739 ASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATA 1798 A+V+Y+Q + +P+LL+++ L++ V+ MFD YV++ +V + L + V A Sbjct 2576 AAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFVNAA 2635 Query 1799 EAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYML 1857 L + V L+ V+ TFI AR+ +DSDVETK + + + + + ++ T +SCNN + Sbjct 2636 HNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNNLVP 2695 Query 1858 TYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKK 1917 TY K + + DLG I +A+H+ A VAK+ N+A IW+V F LS L+ ++R A K Sbjct 2696 TYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSK 2755 Query 1918 NNLPFKLTCATTRQVVNVVTTKIALKGG 1945 L KLT V ++TT +LKGG Sbjct 2756 TGLKIKLTYNKQEANVPILTTPFSLKGG 2783 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/183 (33%), Positives = 83/183 (45%), Gaps = 21/183 (11%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V E+ + + I F LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVEFNDKPKVKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 AV TL P E + T + L+ + YLFDE GE +A MYCSF PD++ Sbjct 892 AVESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDE---- 947 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 DC + + + + DD SAAL + QEED + Q V + D Sbjct 948 DCVAADVVDADENQGDDADD-----------SAALV-TDTQEEDGV-AKGQVGVAESDAR 994 Query 177 EDN 179 D Sbjct 995 LDQ 997 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/154 (34%), Positives = 82/154 (53%), Gaps = 4/154 (3%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA + E+ D + Sbjct 1267 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKN 1326 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQHEVLLAPLLS 332 G +VG +G NL K L++VGP+ +G Q L+ AY++ N+ + ++ L+S Sbjct 1327 QGVCQVGECYESTGGNLCKTVLNIVGPDA-RGHGKQCYSFLERAYQHINKCDDVVTTLIS 1385 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 AGIF SL + V NV L +K+ +D Sbjct 1386 AGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFD 1419 >sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 475 bits (1222), Expect = 8e-135, Method: Compositional matrix adjust. Identities = 375/1285 (29%), Positives = 604/1285 (47%), Gaps = 114/1285 (9%) Query 731 EVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIK 790 +V + ++ LL+ + V TVD +N + V +G+ G + DG +VTK++ Sbjct 1543 KVASVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVR 1598 Query 791 PHNSHEGKTFYV---LPNDDTLRV-EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGL 846 H+GK F+ L D + V +AF + +P L +Y + L K W Sbjct 1599 CSAIHKGKVFFQYSGLSAADLVAVTDAFGF---DEPQLL-KYYNMLGMCK-WPVVVCGNY 1653 Query 847 TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGE 906 + K ++NNCY+ A L LQ + LKF+ Q+A+ R+G+ F +L+LA + E Sbjct 1654 FAFKQSNNNCYINVACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNE 1713 Query 907 LGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQ 966 D + M + + A+L VCK CG +Q KGV+AVM+ GTL KG Sbjct 1714 PSDSTDFMRVVLREADLSGATCDFEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYT 1772 Query 967 IPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKET 1026 I CTCG + + Q PF++ S P +L A+ +TG GHY H+ K Sbjct 1773 IACTCGNKLV-HCTQLNVPFLICSNKPEGKKLPDDVVA-ANIFTGG-SLGHYTHVKCKPK 1829 Query 1027 LYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKD 1085 D ++K SE KG TD Y +N T + K T+ LD V C E +P L YY + Sbjct 1830 YQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCES 1889 Query 1086 NSYFTEQPIDLVPNQPYPNAS--FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFF 1142 Y+T +PI + + + NFK V +I A+ N G+ E K+T + Sbjct 1890 GKYYT-KPIIKAQFRTFEKVEGVYTNFKLVGHSI--AEKFNAKLGFDCNSPFTEYKITEW 1946 Query 1143 PDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWST 1198 P GDVV Y + G KP++W H + TY +P+ C ++ Sbjct 1947 PTATGDVVLASDDLYVSRYSGGCVTFGKPVIWLGHEEASLKSLTYFNRPSVVC-ENKFNV 2005 Query 1199 KPVETSNSFD-------VLKSEDAQG---MDNLACEDLKPVSEEVVEN---------PTI 1239 PV+ S D VL + G A E S+ VV+ Sbjct 2006 LPVDVSEPTDKGPVPAAVLVTGALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGA 2065 Query 1240 QKDVLECNV----KTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNEL 1295 DV E + K +V +++ + K+ + + D+ ++ + NEL Sbjct 2066 TVDVKEVKLNGVKKPIKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANEL 2125 Query 1296 SRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNR---------- 1345 SR+ VNS T+ Y K + K+V ++ R + Sbjct 2126 SRL-------------VNS---PTVREYVKWGMTKIVIPAKLVLLRDEKQEFVAPKVVKA 2169 Query 1346 ---VCTNYMPYFFTLLLQLCTF--------TRSTNSRIKASMPTTIAKNTVKSVGKFCLE 1394 C + + +FF F T S++ ++ KN +++ + Sbjct 2170 KVIACYSAVKWFFLYCFSWIKFNTDNKVIYTTEVASKLTFNLCCLAFKNALQTFNWNVVS 2229 Query 1395 ASFNYLKSPNFSKLINIIIWFLLLS-VCLGSLIYSTAALGVLMS----NLGMPSYCTGYR 1449 F +L + F N + ++LS L ++ + +G +++ G+ + C Y+ Sbjct 2230 RGF-FLVATVFLLWFNFLYANVILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFTLCDLYQ 2288 Query 1450 ---EGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAF 1503 GY +S +C GS+ C +C SG D LD Y ++ +Q + SF + ++ F Sbjct 2289 VSDVGYRSS-------FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDY-ISLF 2340 Query 1504 GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAPISA 1561 LV E + Y L+T FY L MQL ++ F+ + W + + M P Sbjct 2341 KLVVELVIGYSLYTVCFYPLFGLIGMQLLTTWLPEFFMLETMHWSARFFVFVANMLPAFT 2400 Query 1562 MVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYAN 1621 ++R YI + Y ++ HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V AN Sbjct 2401 LLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRYYDVMAN 2460 Query 1622 GGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNG 1681 GG GFC H WNC+NC F G+TFI+ E A DLS + KRP+NPTD + Y+V V Sbjct 2461 GGTGFCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTEVKQVGC 2520 Query 1682 SIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASV 1741 S+ L++++ GQ+ Y+ S S FV+++ L + KG +V+V + ++ +++ +A+V Sbjct 2521 SMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAV 2578 Query 1742 YYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAE 1801 +Y+Q + +P+LL+++ L++ V+ MFD YV++ +V + L + V A Sbjct 2579 FYAQSLYRPMLLVEKKLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFVNAAHNS 2638 Query 1802 LAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN 1860 L + V L+ V+ TFI AR+ +DSDVETK + + + + + ++ T +SCNN + TY Sbjct 2639 LKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNNLVPTYV 2698 Query 1861 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL 1920 K + + DLG I +A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L Sbjct 2699 KSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGL 2758 Query 1921 PFKLTCATTRQVVNVVTTKIALKGG 1945 KLT V ++TT +LKGG Sbjct 2759 KIKLTYNKQEANVPILTTPFSLKGG 2783 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/182 (33%), Positives = 83/182 (46%), Gaps = 21/182 (12%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V E+ + + I F LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVEFNDKPKVKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 AV TL P E + T + L+ + YLFDE GE +A MYCSF PD++ Sbjct 892 AVESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDE---- 947 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 DC + + + + DD SAAL + QEED + Q V + D Sbjct 948 DCVAADVVDADENQGDDADD-----------SAALV-TDTQEEDGV-AKGQVGVAESDAR 994 Query 177 ED 178 D Sbjct 995 LD 996 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/154 (34%), Positives = 82/154 (53%), Gaps = 4/154 (3%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA + E+ D + Sbjct 1267 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKN 1326 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQHEVLLAPLLS 332 G +VG +G NL K L++VGP+ +G Q L+ AY++ N+ + ++ L+S Sbjct 1327 QGVCQVGECYESTGGNLCKTVLNIVGPDA-RGHGKQCYSFLERAYQHINKCDDVVTTLIS 1385 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 AGIF SL + V NV L +K+ +D Sbjct 1386 AGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFD 1419 >sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 474 bits (1219), Expect = 2e-134, Method: Compositional matrix adjust. Identities = 361/1233 (29%), Positives = 582/1233 (47%), Gaps = 79/1233 (6%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNG-LTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW VNG S + + NNCY+ A L LQ Sbjct 1660 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVV-VNGPFFSFEQSHNNCYVNVACLMLQ 1717 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1718 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1777 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1778 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1835 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1952 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKPASR-ELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1953 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2010 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL +D+ Sbjct 2011 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLS------VDS 2054 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2055 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2114 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2115 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2170 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCL--E 1394 R + ++ + F + L FT + + N FCL + Sbjct 2171 IFKARAIEFY--GFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNL------FCLALK 2222 Query 1395 ASFNYLKSPNFSKLINII-----IWF--LLLSVCLGSL---------IYSTAALGVLMSN 1438 +F + F K ++ WF L ++V I+ + + + Sbjct 2223 NAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKAT 2282 Query 1439 LGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS--- 1495 G+ + C Y + + T + +C GS C +C SG D LDTY +++ +Q + Sbjct 2283 FGLVTICDFYSKLGVGFT----SHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVL 2338 Query 1496 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINL 1553 F + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2339 FDY-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFV 2397 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV Sbjct 2398 ANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVI 2457 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2458 RYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVV 2517 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 1733 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V + S + Sbjct 2518 TDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVE--SDADR 2575 Query 1734 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 1793 ++ +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + Sbjct 2576 ANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNN 2635 Query 1794 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 1852 V A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ Sbjct 2636 FVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENY 2695 Query 1853 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 1912 NN + TY K +N+ DLG I A+H+ VAK NI+ IW + F L+ L+ +++ Sbjct 2696 NNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLK 2755 Query 1913 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 A K L KLT V ++TT +LKGG Sbjct 2756 KACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2788 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 274 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 331 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 332 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 366 SAGIF SL + V V L +K +D Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1462 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 62/117 (53%), Gaps = 4/117 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 113 A+ L E + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 840 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 899 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1095 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1154 Query 900 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 K + + G V + + ++++ N C CG L G++AV + G + Sbjct 1155 IPKAIVLPQGGYVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDAVFFYGDI- 1209 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESP 985 V C CG T L+ + P Sbjct 1210 -------VSHVCKCGHNMT--LIAADLP 1228 >sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus HKU4 OX=694007 GN=1a PE=1 SV=1 Length=4434 Score = 404 bits (1038), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 217/544 (40%), Positives = 332/544 (61%), Gaps = 15/544 (3%) Query 1412 IIWFLLLSVCLGSLIYSTAALGVLM------SNLGMPSYCTGYREGYLNSTNVTIATYCT 1465 I +L + L S + A G+L S LG+ + C G Y N T+ + +C+ Sbjct 2236 IYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRN-TSFDVMEFCS 2294 Query 1466 G-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLG 1524 S+ C CL G DSL Y +L+ +Q I+S+ ++ E+FLAY+L+T F VL Sbjct 2295 NRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLL 2354 Query 1525 LAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 1582 L Q FF+Y + V++ + ++++ + LV P+ +VR+Y F A +++ K Y HV Sbjct 2355 LVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHV 2414 Query 1583 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 1642 ++GC + C++CYKRNR TRVE +TIV G +R+FY+ ANGG +C HNWNCV CDT Sbjct 2415 INGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGV 2474 Query 1643 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 1702 G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER+ L + Sbjct 2475 GNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCY 2534 Query 1703 FVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 1758 F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL+D L Sbjct 2535 FTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNL 2594 Query 1759 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 1818 V+ VGDS E+A+KM D+++N+F S F+V +KL+ L+ TA + + NVL TF A Sbjct 2595 VTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDA 2654 Query 1819 AR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCS 1877 AR V+SDVET VV+ L+ +H++DI++T + NNY+ Y K +++ DLG ID Sbjct 2655 ARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLK 2714 Query 1878 ARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVT 1937 A +N ++ N A +WN D+M LS+ ++QIR A +K N+PF+LT + R N+++ Sbjct 2715 AASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILS 2774 Query 1938 TKIA 1941 K + Sbjct 2775 VKFS 2778 Score = 305 bits (781), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 225/771 (29%), Positives = 370/771 (48%), Gaps = 46/771 (6%) Query 573 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 632 +C E A V ++ K + VD G +Y Y+++ + +I N + + MP Sbjct 1345 ICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCS-GICAMPF 1402 Query 633 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 692 GYVTHGL+L ++ Y+R +KVP ++S + + N + + +TPE FI ++ G Sbjct 1403 GYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGG 1460 Query 693 YKDWSY-SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVITFDNL---KTLLSLR 745 Y W SG + + L +++ Y N + + F +L + L+ R Sbjct 1461 YHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSR 1520 Query 746 EVR--TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVL 803 + I+V T+D +N T +++ + T+ +Q G T+ G D++ P G++ +V Sbjct 1521 AAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFVA 1580 Query 804 PN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 862 N ++ +V EYY T+D +FL RY S ++WK+ +G+ S+K ++ NCY+ + Sbjct 1581 DNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATI 1640 Query 863 LTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 921 + + + ++KF PALQ+AY R + G+ +F ALI+AY + T D + + L A Sbjct 1641 MMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKA 1700 Query 922 NLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLV 980 L S K V C CG + G+ A +Y G S E+ + C CG + LV Sbjct 1701 ELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLV 1760 Query 981 QQESPFVMMSAPPAQYELKHGT-----FTCASEYTG-NYQCGHYKHITSKETL-YCIDGA 1033 + +P++++S E+K T + + + G GHY HI K+ L Y D Sbjct 1761 EHSAPWLLVSG---LNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSG 1817 Query 1034 LLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQP 1093 LTK+S+ K +T V+Y YT V Y LDGV E++P L NYY KD Y+T +P Sbjct 1818 SLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKP 1877 Query 1094 -IDLVPNQPYPNASFDNFKFV-CDNIKFADDL----NQLTGYK--KPASRELKVTFFPDL 1145 I P P + + N V D +D + N L G+ KP S++L + P+ Sbjct 1878 TIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNE 1937 Query 1146 NGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSN 1205 +GDV+ ++ +Y P +KKG L KPI+W N + A KPN +R L+ P+ N Sbjct 1938 DGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDN 1997 Query 1206 SFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTE---VVGDIILKPA 1262 + VL+ +Q E PV ++V P + ++E K V G+ Sbjct 1998 KYTVLQDNTSQ-----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVND 2049 Query 1263 NNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAV 1312 N + + + +G T+L A YVD N+ + + N S + L T+ + L V Sbjct 2050 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIV 2100 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 76/181 (42%), Positives = 107/181 (59%), Gaps = 5/181 (3%) Query 163 DDDSQQTVGQQDGSEDNQTTTIQTIVE-VQPQLEMELTPVVQTIEVNSFSGYLK--LTDN 219 D+ S+ V Q + N+ +T VE VQP+ +L P S Y + ++ Sbjct 1107 DEASENQVHQVSDLQGNELLCSETKVEIVQPR--QDLKPRRSRKSKVDLSKYKHTVINNS 1164 Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V + D ++ A + ++VNAAN +LKHGGG+AG +NKA+ +Q ESD+YI+ NGPL Sbjct 1165 VTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPL 1224 Query 280 KVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGAD 339 VG S +L GH LA LHVVGP+ ED LLK Y+ FN+H +++ PL+SAGIF D Sbjct 1225 HVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFSVD 1284 Query 340 P 340 P Sbjct 1285 P 1285 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/219 (26%), Positives = 91/219 (42%), Gaps = 25/219 (11%) Query 4 KVTFGDDTVIEVQGYKSVNITFELDERIDKVLNE-KCSAYTVELGTEVNEFACVVADAVI 62 KVTFGD +EV Y+SV+IT+++ +D +L+ K + +TVE V +F V+ D V+ Sbjct 852 KVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEVL 911 Query 63 KTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP-------------- 108 L P+ G D++++ Y++++ G+ +S+M S P Sbjct 912 TLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEFIEDD 971 Query 109 ------PDEDEEEGDCEE-EEFEPSTQYEYGTEDDYQGKPLEFGATSA---ALQPEEEQE 158 P D+EE EE P + + PLE S ++ E QE Sbjct 972 YLSDELPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLETALESVEAEVVETAEAQE 1031 Query 159 EDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEME 197 DS + G D + + E LE+E Sbjct 1032 PSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELE 1070 >sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 404 bits (1037), Expect = 3e-112, Method: Compositional matrix adjust. Identities = 217/544 (40%), Positives = 332/544 (61%), Gaps = 15/544 (3%) Query 1412 IIWFLLLSVCLGSLIYSTAALGVLM------SNLGMPSYCTGYREGYLNSTNVTIATYCT 1465 I +L + L S + A G+L S LG+ + C G Y N T+ + +C+ Sbjct 2236 IYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRN-TSFDVMEFCS 2294 Query 1466 G-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLG 1524 S+ C CL G DSL Y +L+ +Q I+S+ ++ E+FLAY+L+T F VL Sbjct 2295 NRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLL 2354 Query 1525 LAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 1582 L Q FF+Y + V++ + ++++ + LV P+ +VR+Y F A +++ K Y HV Sbjct 2355 LVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHV 2414 Query 1583 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 1642 ++GC + C++CYKRNR TRVE +TIV G +R+FY+ ANGG +C HNWNCV CDT Sbjct 2415 INGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGV 2474 Query 1643 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 1702 G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER+ L + Sbjct 2475 GNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCY 2534 Query 1703 FVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 1758 F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL+D L Sbjct 2535 FTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNL 2594 Query 1759 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 1818 V+ VGDS E+A+KM D+++N+F S F+V +KL+ L+ TA + + NVL TF A Sbjct 2595 VTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDA 2654 Query 1819 AR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCS 1877 AR V+SDVET VV+ L+ +H++DI++T + NNY+ Y K +++ DLG ID Sbjct 2655 ARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLK 2714 Query 1878 ARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVT 1937 A +N ++ N A +WN D+M LS+ ++QIR A +K N+PF+LT + R N+++ Sbjct 2715 AASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILS 2774 Query 1938 TKIA 1941 K + Sbjct 2775 VKFS 2778 Score = 304 bits (778), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 225/771 (29%), Positives = 370/771 (48%), Gaps = 46/771 (6%) Query 573 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 632 +C E A V ++ K + VD G +Y Y+++ + +I N + + MP Sbjct 1345 ICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCS-GICAMPF 1402 Query 633 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 692 GYVTHGL+L ++ Y+R +KVP ++S + + N + + +TPE FI ++ G Sbjct 1403 GYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGG 1460 Query 693 YKDWSY-SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVITFDNL---KTLLSLR 745 Y W SG + + L +++ Y N + + F +L + L+ R Sbjct 1461 YHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSR 1520 Query 746 EVR--TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVL 803 + I+V T+D +N T +++ + T+ +Q G T+ G D++ P G++ +V Sbjct 1521 AAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFVA 1580 Query 804 PN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 862 N ++ +V EYY T+D +FL RY S ++WK+ +G+ S+K ++ NCY+ + Sbjct 1581 DNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATI 1640 Query 863 LTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 921 + + + ++KF PALQ+AY R + G+ +F ALI+AY + T D + + L A Sbjct 1641 MMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKA 1700 Query 922 NLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLV 980 L S K V C CG + G+ A +Y G S E+ + C CG + LV Sbjct 1701 ELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLV 1760 Query 981 QQESPFVMMSAPPAQYELKHGT-----FTCASEYTG-NYQCGHYKHITSKETL-YCIDGA 1033 + +P++++S E+K T + + + G GHY HI K+ L Y D Sbjct 1761 EHSAPWLLVSG---LNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSG 1817 Query 1034 LLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQP 1093 LTK+S+ K +T V+Y YT V Y LDGV E++P L NYY KD Y+T +P Sbjct 1818 SLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKP 1877 Query 1094 -IDLVPNQPYPNASFDNFKFV-CDNIKFADDL----NQLTGYK--KPASRELKVTFFPDL 1145 I P P + + N V D +D + N L G+ KP S++L + P+ Sbjct 1878 TIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNE 1937 Query 1146 NGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSN 1205 +GDV+ ++ +Y P +KKG L KPI+W N + A KPN +R L+ P+ N Sbjct 1938 DGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDN 1997 Query 1206 SFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTE---VVGDIILKPA 1262 + VL+ +Q E PV ++V P + ++E K V G+ Sbjct 1998 KYTVLQDNTSQ-----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVND 2049 Query 1263 NNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAV 1312 N + + + +G T+L A YVD N+ + + N S + L T+ + L V Sbjct 2050 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIV 2100 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 76/181 (42%), Positives = 107/181 (59%), Gaps = 5/181 (3%) Query 163 DDDSQQTVGQQDGSEDNQTTTIQTIVE-VQPQLEMELTPVVQTIEVNSFSGYLK--LTDN 219 D+ S+ V Q + N+ +T VE VQP+ +L P S Y + ++ Sbjct 1107 DEASENQVHQVSDLQGNELLCSETKVEIVQPR--QDLKPRRSRKSKVDLSKYKHTVINNS 1164 Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V + D ++ A + ++VNAAN +LKHGGG+AG +NKA+ +Q ESD+YI+ NGPL Sbjct 1165 VTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPL 1224 Query 280 KVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGAD 339 VG S +L GH LA LHVVGP+ ED LLK Y+ FN+H +++ PL+SAGIF D Sbjct 1225 HVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFSVD 1284 Query 340 P 340 P Sbjct 1285 P 1285 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/219 (26%), Positives = 91/219 (42%), Gaps = 25/219 (11%) Query 4 KVTFGDDTVIEVQGYKSVNITFELDERIDKVLNE-KCSAYTVELGTEVNEFACVVADAVI 62 KVTFGD +EV Y+SV+IT+++ +D +L+ K + +TVE V +F V+ D V+ Sbjct 852 KVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEVL 911 Query 63 KTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP-------------- 108 L P+ G D++++ Y++++ G+ +S+M S P Sbjct 912 TLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEFIEDD 971 Query 109 ------PDEDEEEGDCEE-EEFEPSTQYEYGTEDDYQGKPLEFGATSA---ALQPEEEQE 158 P D+EE EE P + + PLE S ++ E QE Sbjct 972 YLSDELPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLETALESVEAEVVETAEAQE 1031 Query 159 EDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEME 197 DS + G D + + E LE+E Sbjct 1032 PSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELE 1070 >sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 133/2005 OX=389230 GN=1a PE=3 SV=1 Length=4441 Score = 402 bits (1033), Expect = 7e-112, Method: Compositional matrix adjust. Identities = 209/513 (41%), Positives = 320/513 (62%), Gaps = 9/513 (2%) Query 1437 SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISS 1495 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+S Sbjct 2274 SYLGIRTLCDGLAVEYRN-TSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITS 2332 Query 1496 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINL 1553 + ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + L Sbjct 2333 YVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFL 2392 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 V P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G + Sbjct 2393 VTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTK 2452 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y V Sbjct 2453 RTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYV 2512 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKS 1729 DSV VK+ + L++++ G YER+ L +F NL+ L+ T +P N +++D Sbjct 2513 DSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTND 2572 Query 1730 KCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 1789 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V + Sbjct 2573 RGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRD 2632 Query 1790 KLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVT 1848 KL+ L+ TA + + VL TF AAR V+SDVET VV+ L+ +H++DI++T Sbjct 2633 KLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLT 2692 Query 1849 GDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 1908 + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ + Sbjct 2693 TECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFK 2752 Query 1909 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIA 1941 +QIR A +K N+PF+LT + R N+++ K + Sbjct 2753 RQIRIACRKCNIPFRLTTSKLRAADNILSVKFS 2785 Score = 302 bits (773), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 225/771 (29%), Positives = 367/771 (48%), Gaps = 46/771 (6%) Query 573 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 632 +C E A V ++ K + VD G +Y Y+++ + +I N + MP Sbjct 1352 ICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGC-PGICAMPF 1409 Query 633 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 692 GYVTHGL+L ++ Y+R +KVP ++S + + N + + +TPE FI ++ G Sbjct 1410 GYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGG 1467 Query 693 YKDWSY-SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVITFDNL---KTLLSLR 745 Y W SG + + L +++ Y N + + F +L + L+ R Sbjct 1468 YHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSR 1527 Query 746 EVR--TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVL 803 + I+V T+D +N T +++ + T+ +Q G T+ G D++ P G++ +V Sbjct 1528 AAQQVNIEVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFVA 1587 Query 804 PN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 862 N ++ V EYY T+D +FL RY S ++WK+ +G+ S+K ++ NCY+ + Sbjct 1588 DNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATI 1647 Query 863 LTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 921 + + + ++KF PALQ+AY R + G+ +F ALI+AY + T D + + L A Sbjct 1648 MMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKA 1707 Query 922 NLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLV 980 L S K V C CG + G+ A +Y G S E+ + C CG + LV Sbjct 1708 ELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLV 1767 Query 981 QQESPFVMMSAPPAQYELKHGTFTCASEYTGNY------QCGHYKHITSKETL-YCIDGA 1033 + +P++++S E+K T T N GHY H+ K+ L Y D Sbjct 1768 EHSTPWLLVSG---LNEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSG 1824 Query 1034 LLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQP 1093 LTK+S+ K +T V+Y + YT V Y LDGV E++P L NYY KD Y+T +P Sbjct 1825 SLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKP 1884 Query 1094 -IDLVPNQPYPNASFDNFKFV-CDNIKFADDL----NQLTGYK--KPASRELKVTFFPDL 1145 I P P + + N V D +D + N L G+ KP S++L + P+ Sbjct 1885 TIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNE 1944 Query 1146 NGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSN 1205 +GDV+ ++ +Y P +KKG L KPI+W N + A KPN +R L+ P+ N Sbjct 1945 DGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDN 2004 Query 1206 SFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTE---VVGDIILKPA 1262 + VL+ +Q + E PV E+V + ++E K V G+ Sbjct 2005 KYTVLQDNTSQLI-----EPNVPVVEDV---SITTRKLIEVKCKGLNKPFVKGNFSFVND 2056 Query 1263 NNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAV 1312 N + + + +G T+L A YVD N+ + + N S + L T+ + L V Sbjct 2057 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIV 2107 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 107/176 (61%), Gaps = 8/176 (5%) Query 173 QDGSEDNQT-------TTIQTIVE-VQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKN 224 QD + +NQ T +T VE VQP+ ++ + ++ S + + ++V + Sbjct 1117 QDEASENQVHQVPDLQCTSETKVEIVQPRQDLRPRRLRKSKVDLSKYKHTVINNSVTLVL 1176 Query 225 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 284 D ++ A + V+VNAAN +LKHGGG+AGA+NKA+ +Q ESD+YI+ +GPL VG S Sbjct 1177 GDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISNSGPLHVGDS 1236 Query 285 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADP 340 +L G+ LA L VVGP+ ED LLK Y+ FN+H +++ PL+S+GIF DP Sbjct 1237 VLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGIFSVDP 1292 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 60/106 (57%), Gaps = 1/106 (1%) Query 4 KVTFGDDTVIEVQGYKSVNITFELDERIDKVLNE-KCSAYTVELGTEVNEFACVVADAVI 62 KVTFGD +EV Y+SV+IT+++ +D +L+ K + +TVE V +F V+ D V+ Sbjct 852 KVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEVL 911 Query 63 KTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP 108 L P+ G D++++ Y++++ G+ +S+M S P Sbjct 912 TLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINP 957 >sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 402 bits (1032), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 209/513 (41%), Positives = 320/513 (62%), Gaps = 9/513 (2%) Query 1437 SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISS 1495 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+S Sbjct 2274 SYLGIRTLCDGLAVEYRN-TSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITS 2332 Query 1496 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINL 1553 + ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + L Sbjct 2333 YVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFL 2392 Query 1554 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 1613 V P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G + Sbjct 2393 VTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTK 2452 Query 1614 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 1673 R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y V Sbjct 2453 RTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYV 2512 Query 1674 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKS 1729 DSV VK+ + L++++ G YER+ L +F NL+ L+ T +P N +++D Sbjct 2513 DSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTND 2572 Query 1730 KCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 1789 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V + Sbjct 2573 RGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRD 2632 Query 1790 KLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVT 1848 KL+ L+ TA + + VL TF AAR V+SDVET VV+ L+ +H++DI++T Sbjct 2633 KLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLT 2692 Query 1849 GDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 1908 + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ + Sbjct 2693 TECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFK 2752 Query 1909 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIA 1941 +QIR A +K N+PF+LT + R N+++ K + Sbjct 2753 RQIRIACRKCNIPFRLTTSKLRAADNILSVKFS 2785 Score = 301 bits (770), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 225/771 (29%), Positives = 367/771 (48%), Gaps = 46/771 (6%) Query 573 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 632 +C E A V ++ K + VD G +Y Y+++ + +I N + MP Sbjct 1352 ICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGC-PGICAMPF 1409 Query 633 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 692 GYVTHGL+L ++ Y+R +KVP ++S + + N + + +TPE FI ++ G Sbjct 1410 GYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGG 1467 Query 693 YKDWSY-SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVITFDNL---KTLLSLR 745 Y W SG + + L +++ Y N + + F +L + L+ R Sbjct 1468 YHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSR 1527 Query 746 EVR--TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVL 803 + I+V T+D +N T +++ + T+ +Q G T+ G D++ P G++ +V Sbjct 1528 AAQQVNIEVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFVA 1587 Query 804 PN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 862 N ++ V EYY T+D +FL RY S ++WK+ +G+ S+K ++ NCY+ + Sbjct 1588 DNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATI 1647 Query 863 LTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 921 + + + ++KF PALQ+AY R + G+ +F ALI+AY + T D + + L A Sbjct 1648 MMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKA 1707 Query 922 NLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLV 980 L S K V C CG + G+ A +Y G S E+ + C CG + LV Sbjct 1708 ELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLV 1767 Query 981 QQESPFVMMSAPPAQYELKHGTFTCASEYTGNY------QCGHYKHITSKETL-YCIDGA 1033 + +P++++S E+K T T N GHY H+ K+ L Y D Sbjct 1768 EHSTPWLLVSG---LNEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSG 1824 Query 1034 LLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQP 1093 LTK+S+ K +T V+Y + YT V Y LDGV E++P L NYY KD Y+T +P Sbjct 1825 SLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKP 1884 Query 1094 -IDLVPNQPYPNASFDNFKFV-CDNIKFADDL----NQLTGYK--KPASRELKVTFFPDL 1145 I P P + + N V D +D + N L G+ KP S++L + P+ Sbjct 1885 TIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNE 1944 Query 1146 NGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSN 1205 +GDV+ ++ +Y P +KKG L KPI+W N + A KPN +R L+ P+ N Sbjct 1945 DGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDN 2004 Query 1206 SFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTE---VVGDIILKPA 1262 + VL+ +Q + E PV E+V + ++E K V G+ Sbjct 2005 KYTVLQDNTSQLI-----EPNVPVVEDV---SITTRKLIEVKCKGLNKPFVKGNFSFVND 2056 Query 1263 NNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAV 1312 N + + + +G T+L A YVD N+ + + N S + L T+ + L V Sbjct 2057 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIV 2107 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 107/176 (61%), Gaps = 8/176 (5%) Query 173 QDGSEDNQT-------TTIQTIVE-VQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKN 224 QD + +NQ T +T VE VQP+ ++ + ++ S + + ++V + Sbjct 1117 QDEASENQVHQVPDLQCTSETKVEIVQPRQDLRPRRLRKSKVDLSKYKHTVINNSVTLVL 1176 Query 225 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 284 D ++ A + V+VNAAN +LKHGGG+AGA+NKA+ +Q ESD+YI+ +GPL VG S Sbjct 1177 GDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISNSGPLHVGDS 1236 Query 285 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADP 340 +L G+ LA L VVGP+ ED LLK Y+ FN+H +++ PL+S+GIF DP Sbjct 1237 VLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGIFSVDP 1292 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 60/106 (57%), Gaps = 1/106 (1%) Query 4 KVTFGDDTVIEVQGYKSVNITFELDERIDKVLNE-KCSAYTVELGTEVNEFACVVADAVI 62 KVTFGD +EV Y+SV+IT+++ +D +L+ K + +TVE V +F V+ D V+ Sbjct 852 KVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEVL 911 Query 63 KTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP 108 L P+ G D++++ Y++++ G+ +S+M S P Sbjct 912 TLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINP 957 >sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 512/2005 OX=693999 GN=1a PE=3 SV=1 Length=4128 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 166/602 (28%), Positives = 277/602 (46%), Gaps = 64/602 (11%) Query 1353 YFFTLLLQLCTFTRSTNSRIKASMP---TTIAKNTVK---SVGKFCLEASFNYLKSPNFS 1406 Y F+LL + + ++ A +P I K +VK KF F Y+K Sbjct 1984 YLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVKYNYKALKFFFRLKFQYIKV---- 2039 Query 1407 KLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTG 1466 FL S+ L +L Y+ + + + +G P C Y +GY NST YC G Sbjct 2040 --------FLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYC-G 2087 Query 1467 SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLA 1526 ++ C +CL G + L + I K L L + + I+F FF +G+ Sbjct 2088 NVLCKICLYGYEELSDFTHTRVIW---QHLKDPLIGNILPLFYLVFLIIFGGFFVRIGIT 2144 Query 1527 AIMQLFFSY--FAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVD 1584 + + + A+ + N WL+ L+ P ++M + + + HV+ Sbjct 2145 YFIMQYINAAGVALGYQDNVWLLHLL-------PFNSMGNIIVVAFIVTRILLFLKHVLF 2197 Query 1585 GCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGS 1644 GC+ +C+ C K + TRV TI+ GV +SFYV ANGGK FCK HN+ CV+CD++ G Sbjct 2198 GCDKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGC 2257 Query 1645 TFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFV 1704 TFI+D +A +LS K + PT ++ I+D V NG +LY K + + + Sbjct 2258 TFINDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYA 2317 Query 1705 NLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGD 1764 D L+ N + + +VF+ S + K+A VY+SQL+C+PI L+D AL++ + Sbjct 2318 CKDVLKNCN----ILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASL-- 2370 Query 1765 SAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFV 1824 + + + + A+V S++F + + + R+ Sbjct 2371 NVDFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLG 2408 Query 1825 DSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPRDLGACIDCSARHINA 1883 SDV ++ + +H+ D+ ++ S NN +++Y K E + D+ C+ A+ +N Sbjct 2409 LSDVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNH 2468 Query 1884 QVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALK 1943 V N+ ++W KDF++LSE+ RK I K + F LT R + + T +A K Sbjct 2469 NVLTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANK 2528 Query 1944 GG 1945 G Sbjct 2529 KG 2530 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/204 (32%), Positives = 94/204 (46%), Gaps = 16/204 (8%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 VVNAAN L HGGG+A AL+ T +QV S+ Y++ NG +KVG ++ L+ Sbjct 1323 VVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE--HSILN 1380 Query 299 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR---VCVDTVRTN 354 VVGP K +LL AY F Q V L PLLS GIF SL CV Sbjct 1381 VVGPRKGK-HAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGDRVCK 1439 Query 355 VYLAVFDKNL-YDKLVSSFLEMKSEKQVE-----QKIAEIPKEEVKPFITESKPSVEQRK 408 + + L V+SF ++E+ VE Q++ + E+ P + P R Sbjct 1440 CFCYTDKERLAIQNFVTSF---QTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPCEPFRI 1496 Query 409 QDDKKIKACVEEVTTTLEETKFLT 432 + D K + +L+ T+ ++ Sbjct 1497 EGDAKFYDLTPSMVQSLQVTRLVS 1520 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/196 (27%), Positives = 83/196 (42%), Gaps = 12/196 (6%) Query 743 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 802 +L E + ++V T D + HT + S TYGQQ G ++ VT +KP + + + V Sbjct 1634 TLFEAKPVQVVVTQDQRSFHTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDKVVS--V 1691 Query 803 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATA 861 +PN V+ ++Y D L+HT + VNG ++ +DNNC++ Sbjct 1692 VPN-----VDWDKHYGFVDAGIF----HTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAV 1742 Query 862 LLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 921 L LQ KF P LQ + G+ A F + GE D T++ + + Sbjct 1743 CLQLQFANAKFKPKGLQQLWESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFL 1802 Query 922 NLDSCKRVLNVVCKTC 937 +L TC Sbjct 1803 KPQGSVEMLRATSTTC 1818 >sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 169/607 (28%), Positives = 281/607 (46%), Gaps = 74/607 (12%) Query 1353 YFFTLLLQLCTFTRSTNSRIKASMPT---TIAKNTVK---SVGKFCLEASFNYLKSPNFS 1406 Y F+LL + + ++ A +P I K +VK KF F Y+K Sbjct 1984 YLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVKYNYKALKFFFRLKFQYIKV---- 2039 Query 1407 KLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTG 1466 FL S+ L +L Y+ + + + +G P C Y +GY NST YC G Sbjct 2040 --------FLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYC-G 2087 Query 1467 SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLA 1526 ++ C +CL G + L + I K L L + + I+F FF +G+ Sbjct 2088 NVLCKICLYGYEELSDFTHTRVIW---QHLKDPLIGNILPLFYLVFLIIFGGFFVRIGIT 2144 Query 1527 AIMQLFFSY--FAVHFISNSWLMWLII-----NLVQMAPISAMVRMYIFFASFYYVWKSY 1579 + + + A+ + N WL+ L+ N++ +A I + R+ +F Sbjct 2145 YFIMQYINAAGVALGYQDNVWLLHLLPFNSMGNIIVVAFI--VTRILLFLK--------- 2193 Query 1580 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 1639 HV+ GC+ +C+ C K + TRV TI+ GV +SFYV ANGGK FCK HN+ CV+CD+ Sbjct 2194 -HVLFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDS 2252 Query 1640 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 1699 + G TFI+D +A +LS K + PT ++ I+D V NG +LY K + Sbjct 2253 YGYGCTFINDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDIT 2312 Query 1700 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV 1759 + + D L+ N + + +VF+ S + K+A VY+SQL+C+PI L+D AL+ Sbjct 2313 EAKYACKDVLKNCN----ILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALL 2367 Query 1760 SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAA 1819 + + + + + + A+V S++F + + + Sbjct 2368 ASL--NVDFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NEC 2403 Query 1820 RQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPRDLGACIDCSA 1878 R+ SDV ++ + +H+ D+ ++ S NN +++Y K E + D+ C+ A Sbjct 2404 RESLGLSDVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGA 2463 Query 1879 RHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTT 1938 + +N V N+ ++W KDF++LSE+ RK I K + F LT R + + T Sbjct 2464 KVVNHNVLTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTI 2523 Query 1939 KIALKGG 1945 +A K G Sbjct 2524 SVANKKG 2530 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 97/206 (47%), Gaps = 20/206 (10%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG--HNLAKHC 296 VVNAAN L HGGG+A AL+ T +QV S+ Y++ NG +KVG ++ H++ Sbjct 1323 VVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKEHSI---- 1378 Query 297 LHVVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR---VCVDTVR 352 L+VVGP K +LL AY F Q V L PLLS GIF SL CV Sbjct 1379 LNVVGPRKGK-HAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGDRV 1437 Query 353 TNVYLAVFDKNL-YDKLVSSFLEMKSEKQVE-----QKIAEIPKEEVKPFITESKPSVEQ 406 + + L V+SF ++E+ VE Q++ + E+ P + P Sbjct 1438 CKCFCYTDKERLAIQNFVTSF---QTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPCEPF 1494 Query 407 RKQDDKKIKACVEEVTTTLEETKFLT 432 R + D K + +L+ T+ ++ Sbjct 1495 RIEGDAKFYDLTPSMVQSLQVTRLVS 1520 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 12/206 (6%) Query 743 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 802 +L E + ++V T D + HT + S TYGQQ G ++ VT +KP + + + V Sbjct 1634 TLFEAKPVQVVVTQDQRSFHTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDKVVS--V 1691 Query 803 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATA 861 +PN V+ ++Y D L+HT + VNG ++ +DNNC++ Sbjct 1692 VPN-----VDWDKHYGFVDAGIF----HTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAV 1742 Query 862 LLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 921 L LQ KF P LQ + G+ A F + GE D T++ + + Sbjct 1743 CLQLQFANAKFKPKGLQQLWESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFL 1802 Query 922 NLDSCKRVLNVVCKTCGQQQTTLKGV 947 +L TC +T + V Sbjct 1803 KPQGSVEMLRATSTTCDGTCSTKRVV 1828 >sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 200 bits (509), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 177/617 (29%), Positives = 281/617 (46%), Gaps = 94/617 (15%) Query 1354 FFTLLLQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLI 1409 FFT LL + T ++ + +I A P +S+ K+ L+AS LKS Sbjct 1936 FFTWLLSMFTLCKTAVTTGDVKIMAKAPQRTGVVLKRSL-KYNLKASAAVLKSK------ 1988 Query 1410 NIIIWFLLLSVC-LGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSI 1468 W+LL L LIY+ ++ +L G ++C+ GY S N YC GS+ Sbjct 1989 ----WWLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYAKS-NFVKDDYCDGSL 2043 Query 1469 PCSVCLSGLDSLDTYPSLETI--QITISSFKWDLTAFGLVAEWFL---AYILFTRFFYVL 1523 C +CL G L + L+ + IT F ++ F ++ + Y+ ++V Sbjct 2044 GCKMCLFGYQELSQFSHLDVVWKHITDPLFS-NMQPFIVMVLLLIFGDNYLRCFLLYFVA 2102 Query 1524 GLAAIMQLFFSY----FAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 1579 + + + +F Y + +HFI + ++ V + + + VR Sbjct 2103 QMISTVGVFLGYKETNWFLHFIPFDVICDELLVTVIVIKVISFVR--------------- 2147 Query 1580 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 1639 HV+ GC + C+ C K R R TIVNGV+RSFYV ANGG FCK H + CV+CD+ Sbjct 2148 -HVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDS 2206 Query 1640 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY---------FDKA 1690 + GSTFI+ EV+R+L K + PT + ++D V +NG LY FD Sbjct 2207 YGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDIT 2266 Query 1691 GQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQP 1750 K + + LD+ N G+ NV + K+ASVY+SQL+C+P Sbjct 2267 ESKYSCKEVFKNCNVLDDFIVFNNNGT---NV-----------TQVKNASVYFSQLLCRP 2312 Query 1751 ILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSL-D 1809 I L+D L+S + S + + AY++ ++F + L ++ AE + A +S+ D Sbjct 2313 IKLVDSELLSTL--SVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAECKRALGLSISD 2367 Query 1810 NVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPR 1868 + ++ IS A H+ D+ ++ S NN++ +Y K E ++ Sbjct 2368 HEFTSAISNA---------------------HRCDVLLSDLSFNNFVSSYAKPEEKLSAY 2406 Query 1869 DLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCAT 1928 DL C+ A+ +NA V ++W+ KDF SLS + RK I +K L F LT Sbjct 2407 DLACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINE 2466 Query 1929 TRQVVNVVTTKIALKGG 1945 + V + T I K G Sbjct 2467 NQAVTQIPATSIVAKQG 2483 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 110/246 (45%), Gaps = 18/246 (7%) Query 173 QDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVN---------SFSGYLKLTDNVYIK 223 Q + D T + ++E+ +TP+ T++ + +L + DNV Sbjct 1226 QPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEFVVKEKLNAFL-VHDNVAFY 1284 Query 224 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 283 D+ V +VNAAN L HGGG+A AL+ T +Q S ++I G +KVG Sbjct 1285 QGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGT 1344 Query 284 SCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHS 343 ++ +L +VVGP K E L+K+ N+ L P+LS GIFG S Sbjct 1345 GVMVECDSL--RIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETS 1402 Query 344 LRVCVDTVRTN-VYLAVFDKNLYDKL---VSSFLEMKSEKQ--VEQKIAEIPKEEVKPFI 397 L V +D T V + V+ K+ VS + ++ +Q +E K + K KP+ Sbjct 1403 LEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYR 1462 Query 398 TESKPS 403 + K S Sbjct 1463 VDGKFS 1468 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 74/339 (22%), Positives = 137/339 (40%), Gaps = 30/339 (9%) Query 742 LSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFY 801 L E + I + T D +N+H V ++ QQ G D++ P + + + Sbjct 1595 LKAAEAKVITIKVTEDGVNVHDVTVTTDKSFEQQVGVIADKDKDLSGAVPSDLNTSELL- 1653 Query 802 VLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLAT 860 + V+ E+Y D + ++H+ ++ VNG+ +K +DNNC++ Sbjct 1654 ----TKAIDVDWVEFYGFKD----AVTFATVDHSAFAYESAVVNGIRVLKTSDNNCWVNA 1705 Query 861 ALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH 920 + LQ + F L A+ + G+ F A + G+ GD +T++ L ++ Sbjct 1706 VCIALQYSKPHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKGDAEDTLTKLSKY 1765 Query 921 -ANLDSCKRVLNVVCKTCGQQ-QTTLKGVEAVMYMGTLSYEQFKKGVQIP-CTCGKQATK 977 AN + C C + + ++ + + + ++ + GVQ+ C G + Sbjct 1766 LANEAQVQLEHYSSCVECDAKFKNSVASINSAIVCASVK----RDGVQVGYCVHGIKYYS 1821 Query 978 YLVQQESPFVMMSA----PPAQYELKHGTFTCASEYTGNYQCGHYK-HITSKETLYCIDG 1032 + +++S P AQ L G A ++G GHY + T+K+++Y DG Sbjct 1822 RVRSVRGRAIIVSVEQLEPCAQSRLLSGVAYTA--FSGPVDKGHYTVYDTAKKSMY--DG 1877 Query 1033 ALLTKSSEYKGPITDVF----YKENSYTTTIKPVTYKLD 1067 K +T V Y T KPV +LD Sbjct 1878 DRFVKHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLD 1916 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 110/267 (41%), Gaps = 18/267 (7%) Query 840 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 899 + ++NGL +K DNNC++ + +L +Q + A+Q + R + C Sbjct 1038 FEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQ-FFKMGRVAKMIERC-YTAEQ 1095 Query 900 CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 959 C + G +GDV M L + +L + V++ C +C + G AV++ T + + Sbjct 1096 CIR--GAMGDVGLCMYRLLK--DLHTGFMVMDYKC-SCTSGRLEESG--AVLFC-TPTKK 1147 Query 960 QFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYK 1019 F G + C + T +Q FV P C+S + G CGHY+ Sbjct 1148 AFPYGTCLNCNAPRMCTIRQLQGTIIFVQQKPEPVNPVSFVVKPVCSSIFRGAVSCGHYQ 1207 Query 1020 HITSKETLYCIDGALLTKSSEYKG-PITDVFYKENSYTT----TIKPVTYKLDGVVCTE- 1073 + L C+DG + K + + + K+ Y ++ P+ +D E Sbjct 1208 TNIYSQNL-CVDGFGVNKIQPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEF 1266 Query 1074 -IDPKLDNYYKKDNSYFTEQPIDLVPN 1099 + KL+ + DN F + +D V N Sbjct 1267 VVKEKLNAFLVHDNVAFYQGDVDTVVN 1293 >sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus 229E OX=11137 GN=1a PE=1 SV=1 Length=4085 Score = 200 bits (508), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 177/617 (29%), Positives = 281/617 (46%), Gaps = 94/617 (15%) Query 1354 FFTLLLQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLI 1409 FFT LL + T ++ + +I A P +S+ K+ L+AS LKS Sbjct 1936 FFTWLLSMFTLCKTAVTTGDVKIMAKAPQRTGVVLKRSL-KYNLKASAAVLKSK------ 1988 Query 1410 NIIIWFLLLSVC-LGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSI 1468 W+LL L LIY+ ++ +L G ++C+ GY S N YC GS+ Sbjct 1989 ----WWLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYAKS-NFVKDDYCDGSL 2043 Query 1469 PCSVCLSGLDSLDTYPSLETI--QITISSFKWDLTAFGLVAEWFL---AYILFTRFFYVL 1523 C +CL G L + L+ + IT F ++ F ++ + Y+ ++V Sbjct 2044 GCKMCLFGYQELSQFSHLDVVWKHITDPLFS-NMQPFIVMVLLLIFGDNYLRCFLLYFVA 2102 Query 1524 GLAAIMQLFFSY----FAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 1579 + + + +F Y + +HFI + ++ V + + + VR Sbjct 2103 QMISTVGVFLGYKETNWFLHFIPFDVICDELLVTVIVIKVISFVR--------------- 2147 Query 1580 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 1639 HV+ GC + C+ C K R R TIVNGV+RSFYV ANGG FCK H + CV+CD+ Sbjct 2148 -HVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDS 2206 Query 1640 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY---------FDKA 1690 + GSTFI+ EV+R+L K + PT + ++D V +NG LY FD Sbjct 2207 YGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDIT 2266 Query 1691 GQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQP 1750 K + + LD+ N G+ NV + K+ASVY+SQL+C+P Sbjct 2267 ESKYSCKEVFKNCNVLDDFIVFNNNGT---NV-----------TQVKNASVYFSQLLCRP 2312 Query 1751 ILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSL-D 1809 I L+D L+S + S + + AY++ ++F + L ++ AE + A +S+ D Sbjct 2313 IKLVDSELLSTL--SVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAECKRALGLSISD 2367 Query 1810 NVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPR 1868 + ++ IS A H+ D+ ++ S NN++ +Y K E ++ Sbjct 2368 HEFTSAISNA---------------------HRCDVLLSDLSFNNFVSSYAKPEEKLSAY 2406 Query 1869 DLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCAT 1928 DL C+ A+ +NA V ++W+ KDF SLS + RK I +K L F LT Sbjct 2407 DLACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINE 2466 Query 1929 TRQVVNVVTTKIALKGG 1945 + V + T I K G Sbjct 2467 NQAVTQIPATSIVAKQG 2483 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 110/246 (45%), Gaps = 18/246 (7%) Query 173 QDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVN---------SFSGYLKLTDNVYIK 223 Q + D T + ++E+ +TP+ T++ + +L + DNV Sbjct 1226 QPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEFVVKEKLNAFL-VHDNVAFY 1284 Query 224 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 283 D+ V +VNAAN L HGGG+A AL+ T +Q S ++I G +KVG Sbjct 1285 QGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGT 1344 Query 284 SCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHS 343 ++ +L +VVGP K E L+K+ N+ L P+LS GIFG S Sbjct 1345 GVMVECDSL--RIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETS 1402 Query 344 LRVCVDTVRTN-VYLAVFDKNLYDKL---VSSFLEMKSEKQ--VEQKIAEIPKEEVKPFI 397 L V +D T V + V+ K+ VS + ++ +Q +E K + K KP+ Sbjct 1403 LEVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYR 1462 Query 398 TESKPS 403 + K S Sbjct 1463 VDGKFS 1468 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 74/339 (22%), Positives = 137/339 (40%), Gaps = 30/339 (9%) Query 742 LSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFY 801 L E + I + T D +N+H V ++ QQ G D++ P + + + Sbjct 1595 LKAAEAKVITIKVTEDGVNVHDVTVTTDKSFEQQVGVIADKDKDLSGAVPSDLNTSELL- 1653 Query 802 VLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLAT 860 + V+ E+Y D + ++H+ ++ VNG+ +K +DNNC++ Sbjct 1654 ----TKAIDVDWVEFYGFKD----AVTFATVDHSAFAYESAVVNGIRVLKTSDNNCWVNA 1705 Query 861 ALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH 920 + LQ + F L A+ + G+ F A + G+ GD +T++ L ++ Sbjct 1706 VCIALQYSKPHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKGDAEDTLTKLSKY 1765 Query 921 -ANLDSCKRVLNVVCKTCGQQ-QTTLKGVEAVMYMGTLSYEQFKKGVQIP-CTCGKQATK 977 AN + C C + + ++ + + + ++ + GVQ+ C G + Sbjct 1766 LANEAQVQLEHYSSCVECDAKFKNSVASINSAIVCASVK----RDGVQVGYCVHGIKYYS 1821 Query 978 YLVQQESPFVMMSA----PPAQYELKHGTFTCASEYTGNYQCGHYK-HITSKETLYCIDG 1032 + +++S P AQ L G A ++G GHY + T+K+++Y DG Sbjct 1822 RVRSVRGRAIIVSVEQLEPCAQSRLLSGVAYTA--FSGPVDKGHYTVYDTAKKSMY--DG 1877 Query 1033 ALLTKSSEYKGPITDVF----YKENSYTTTIKPVTYKLD 1067 K +T V Y T KPV +LD Sbjct 1878 DRFVKHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLD 1916 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 110/267 (41%), Gaps = 18/267 (7%) Query 840 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 899 + ++NGL +K DNNC++ + +L +Q + A+Q + R + C Sbjct 1038 FEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQ-FFKMGRVAKMIERC-YTAEQ 1095 Query 900 CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 959 C + G +GDV M L + +L + V++ C +C + G AV++ T + + Sbjct 1096 CIR--GAMGDVGLCMYRLLK--DLHTGFMVMDYKC-SCTSGRLEESG--AVLFC-TPTKK 1147 Query 960 QFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYK 1019 F G + C + T +Q FV P C+S + G CGHY+ Sbjct 1148 AFPYGTCLNCNAPRMCTIRQLQGTIIFVQQKPEPVNPVSFVVKPVCSSIFRGAVSCGHYQ 1207 Query 1020 HITSKETLYCIDGALLTKSSEYKG-PITDVFYKENSYTT----TIKPVTYKLDGVVCTE- 1073 + L C+DG + K + + + K+ Y ++ P+ +D E Sbjct 1208 TNIYSQNL-CVDGFGVNKIQPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEF 1266 Query 1074 -IDPKLDNYYKKDNSYFTEQPIDLVPN 1099 + KL+ + DN F + +D V N Sbjct 1267 VVKEKLNAFLVHDNVAFYQGDVDTVVN 1293 >sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 181 bits (458), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 150/545 (28%), Positives = 244/545 (45%), Gaps = 59/545 (11%) Query 1412 IIWFLLLS-VCLG-SLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIP 1469 + WF +L LG +Y+ + + + +G P C GY NS+ YC S+ Sbjct 2020 LYWFKVLGKFSLGIYALYALLFMTIRFTPIGSP-VCDDVVAGYANSS-FDKNEYCN-SVI 2076 Query 1470 CSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIM 1529 C VCL G L + + + W L+ FFY+ LA Sbjct 2077 CKVCLYGYQELSDFSHTQVV--------WQHLRDPLIGN-------VMPFFYLAFLAIFG 2121 Query 1530 QLFFSYFAVHFIS---NSWLMWL----IINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 1582 ++ ++FI NS ++L I +Q+ P + F V HV Sbjct 2122 GVYVKAITLYFIFQYLNSLGVFLGLQQSIWFLQLVPFDVFGDEIVVFFIVTRVLMFIKHV 2181 Query 1583 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 1642 GC+ ++C+ C K R RV TI G +SFYV+ANGG FCK HN+ C+NCD++ Sbjct 2182 CLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGP 2241 Query 1643 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 1702 G TFI+D +A ++ K + PT ++ ++D V NG +LY K + S Sbjct 2242 GCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDITDSK 2301 Query 1703 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 1762 + + L+ S+ + IVF+ + K+A VY+SQ++C+P+ L+D AL++ + Sbjct 2302 YTCKEALK----NCSIITDFIVFNNNGS-NVNQVKNACVYFSQMLCKPVKLVDSALLASL 2356 Query 1763 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV-LSTFISAARQ 1821 S + + A+V+ S++F + + + + D+V L TF +A + Sbjct 2357 --SVDFGASLHSAFVSVLSNSFGKDLSSCNDM-----QDCKSTLGFDDVPLDTFNAAVAE 2409 Query 1822 GFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTP-RDLGACIDCSARH 1880 +H+ D+ +T S NN+ +Y K E P D+ C+ A+ Sbjct 2410 ------------------AHRYDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKI 2451 Query 1881 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 1940 +N V +I ++W V+DF++LSE+ RK I K + F LT R + T I Sbjct 2452 VNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCI 2511 Query 1941 ALKGG 1945 A K G Sbjct 2512 ANKKG 2516 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/165 (34%), Positives = 74/165 (45%), Gaps = 10/165 (6%) Query 175 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIE---VNSFSGYLKLTDNVYIKNADIVEEA 231 G + T+ TI L P V ++ V F Y NV D + Sbjct 1255 GRHQIKYDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSY----KNVDFYQGDF-SDL 1309 Query 232 KKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHN 291 K+ VVNAAN L HGGG+A A++ T +Q S+DYI +GP+KVG +L Sbjct 1310 VKLPCDFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA-- 1367 Query 292 LAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIF 336 L +VVGP K L+K+ F V L PL+S GIF Sbjct 1368 LGLKVFNVVGPRKGKHAPELLVKAYKSVFANSGVALTPLISVGIF 1412 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 85/344 (25%), Positives = 138/344 (40%), Gaps = 38/344 (11%) Query 730 GEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKI 789 G V T D+++ + + V IKV T D ++ V+ + TYGQQ GP ++ VT Sbjct 1616 GFVSTPDDVERFYANKSV-VIKV--TEDTRSVKAVKVESTATYGQQIGPCLVNDTVVTDN 1672 Query 790 KPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLT 847 KP + V+PN + ++ ++ D + G + L+HT + +P VNG Sbjct 1673 KPVVADVVAK--VVPNAN------WDSHYGFDKA--GEF-HMLDHTG-FTFPSEVVNGRR 1720 Query 848 SIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGEL 907 IK DNNC++ L LQ +F LQ + G+ A F + G+ Sbjct 1721 VIKTTDNNCWVNVTCLQLQFARFRFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQP 1780 Query 908 GDVRETMSYLFQH---ANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKG 964 D ++ L ++ A + +RV + C C ++ T V A + K G Sbjct 1781 SDSENALNMLSKYIVPAGSVTIERVTHDGC-CCSKRVVTAPVVNASV---------LKLG 1830 Query 965 VQ---IPCTCGKQATKYLVQQESPFVMMSAP---PAQYELKHGTFTCASEYTGNYQCGHY 1018 V+ P +V+ + V + P P+ LK ++T + GN GHY Sbjct 1831 VEDGLCPHGLNYIGKVVVVKGTTIVVNVGKPVVAPSHLFLKGVSYTTFLD-NGNGVVGHY 1889 Query 1019 KHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPV 1062 + T DG P+T+V E + PV Sbjct 1890 T-VFDHGTGMVHDGDAFVPGDLNVSPVTNVVVSEQTAVVIKDPV 1932 >sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1 Length=4117 Score = 180 bits (457), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 150/545 (28%), Positives = 244/545 (45%), Gaps = 59/545 (11%) Query 1412 IIWFLLLS-VCLG-SLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIP 1469 + WF +L LG +Y+ + + + +G P C GY NS+ YC S+ Sbjct 2020 LYWFKVLGKFSLGIYALYALLFMTIRFTPIGSP-VCDDVVAGYANSS-FDKNEYCN-SVI 2076 Query 1470 CSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIM 1529 C VCL G L + + + W L+ FFY+ LA Sbjct 2077 CKVCLYGYQELSDFSHTQVV--------WQHLRDPLIGN-------VMPFFYLAFLAIFG 2121 Query 1530 QLFFSYFAVHFIS---NSWLMWL----IINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 1582 ++ ++FI NS ++L I +Q+ P + F V HV Sbjct 2122 GVYVKAITLYFIFQYLNSLGVFLGLQQSIWFLQLVPFDVFGDEIVVFFIVTRVLMFIKHV 2181 Query 1583 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 1642 GC+ ++C+ C K R RV TI G +SFYV+ANGG FCK HN+ C+NCD++ Sbjct 2182 CLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGP 2241 Query 1643 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 1702 G TFI+D +A ++ K + PT ++ ++D V NG +LY K + S Sbjct 2242 GCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDITDSK 2301 Query 1703 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 1762 + + L+ S+ + IVF+ + K+A VY+SQ++C+P+ L+D AL++ + Sbjct 2302 YTCKEALK----NCSIITDFIVFNNNGS-NVNQVKNACVYFSQMLCKPVKLVDSALLASL 2356 Query 1763 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV-LSTFISAARQ 1821 S + + A+V+ S++F + + + + D+V L TF +A + Sbjct 2357 --SVDFGASLHSAFVSVLSNSFGKDLSSCNDM-----QDCKSTLGFDDVPLDTFNAAVAE 2409 Query 1822 GFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTP-RDLGACIDCSARH 1880 +H+ D+ +T S NN+ +Y K E P D+ C+ A+ Sbjct 2410 ------------------AHRYDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKI 2451 Query 1881 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 1940 +N V +I ++W V+DF++LSE+ RK I K + F LT R + T I Sbjct 2452 VNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCI 2511 Query 1941 ALKGG 1945 A K G Sbjct 2512 ANKKG 2516 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/165 (34%), Positives = 74/165 (45%), Gaps = 10/165 (6%) Query 175 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIE---VNSFSGYLKLTDNVYIKNADIVEEA 231 G + T+ TI L P V ++ V F Y NV D + Sbjct 1255 GRHQIKYDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSY----KNVDFYQGDF-SDL 1309 Query 232 KKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHN 291 K+ VVNAAN L HGGG+A A++ T +Q S+DYI +GP+KVG +L Sbjct 1310 VKLPCDFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA-- 1367 Query 292 LAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIF 336 L +VVGP K L+K+ F V L PL+S GIF Sbjct 1368 LGLKVFNVVGPRKGKHAPELLVKAYKSVFANSGVALTPLISVGIF 1412 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 88/347 (25%), Positives = 141/347 (41%), Gaps = 44/347 (13%) Query 730 GEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKI 789 G V T D+++ + + V IKV T D ++ V+ + TYGQQ GP ++ VT Sbjct 1616 GFVSTPDDVERFYANKSV-VIKV--TEDTRSVKAVKVESTATYGQQIGPCLVNDTVVTDN 1672 Query 790 KPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLT 847 KP + V+PN + ++ ++ D + G + L+HT + +P VNG Sbjct 1673 KPVVADVVAK--VVPNAN------WDSHYGFDKA--GEF-HMLDHTG-FTFPSEVVNGRR 1720 Query 848 SIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGEL 907 IK DNNC++ L LQ +F LQ + G+ A F + G+ Sbjct 1721 VIKTTDNNCWVNVTCLQLQFARFRFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQP 1780 Query 908 GDVRETMSYLFQH---ANLDSCKRVLNVVCKTCGQQQTTLKGVEA-VMYMGT-------- 955 D ++ L ++ A + +RV + C C ++ T V A V+ +G Sbjct 1781 SDSENALNMLSKYIVPAGSVTIERVTHDGC-CCSKRVVTAPVVNASVLKLGVEDGLCPHG 1839 Query 956 LSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQC 1015 L+Y K V + + T +V P V P+ LK ++T + GN Sbjct 1840 LNY--IGKVVVV------KGTTIVVNVGKPVV----APSHLFLKGVSYTTFLD-NGNGVV 1886 Query 1016 GHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPV 1062 GHY + T DG P+T+V E + PV Sbjct 1887 GHYT-VFDHGTGMVHDGDAFVPGDLNVSPVTNVVVSEQTAVVIKDPV 1932 >sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 145/515 (28%), Positives = 228/515 (44%), Gaps = 66/515 (13%) Query 1445 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS-FKWDLTAF 1503 C GY ST YC S+ C +CL + + I L F Sbjct 1999 CGDIVSGYEKST-FNKDIYCGNSMVCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPF 2057 Query 1504 GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMV 1563 ++ + ++ RF + +A + F S+ H W + P + Sbjct 2058 VILVILLIFGNMYLRFGLLYFVAQFISTFGSFLGFH--QKQWFL-------HFVPFDVLC 2108 Query 1564 RMYIFFASFYYVWKSYV---HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 1620 F A+F V K + H++ GCN++ C+ C K R RV TI+NG+ +SFYV A Sbjct 2109 NE--FLATFI-VCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNA 2165 Query 1621 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 1680 NGG FC HN+ CVNCD+F G+TFI+ ++AR+L K + PT + I+D V N Sbjct 2166 NGGTCFCNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVN 2225 Query 1681 GSIHLY---------FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 1731 G LY FD K + L + L+N N GS N+ Sbjct 2226 GFYRLYSGDTFWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGS---NI--------- 2273 Query 1732 EESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKL 1791 + K+A VY+SQL+C+PI L++ L+S + S + + AYV+ ++F Sbjct 2274 --TQIKNACVYFSQLLCEPIKLVNSELLSTL--SVDFNGVLHKAYVDVLCNSF------- 2322 Query 1792 KTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDS 1851 EL N+S+ +T G SD D V + +H+ D+ ++ S Sbjct 2323 -------FKELTANMSMAECKATL------GLTVSD---DDFVSAVANAHRYDVLLSDLS 2366 Query 1852 CNNYMLTYNKVEN-MTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQ 1910 NN+ ++Y K E+ ++ D+ C+ ++ +N V +I ++W VKDF +LS++ +K Sbjct 2367 FNNFFISYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKY 2426 Query 1911 IRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 + K L F LT + + V T I K G Sbjct 2427 LVKTTKAKGLTFLLTFNDNQAITQVPATSIVAKQG 2461 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 74/144 (51%), Gaps = 6/144 (4%) Query 202 VQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKAT 261 ++ EV F+ Y NV DI V VVNAAN L HGGGVA A++ T Sbjct 1252 IEAGEVKPFAVY----KNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILT 1307 Query 262 NNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFN 321 +Q S DYI++NGPLKVG +L + +VVGP K E L+++ Sbjct 1308 EGQLQSLSKDYISSNGPLKVGAGVMLECEKF--NVFNVVGPRTGKHEHSLLVEAYNSILF 1365 Query 322 QHEVLLAPLLSAGIFGADPIHSLR 345 ++ + L PLLS GIFG +SL+ Sbjct 1366 ENGIPLMPLLSCGIFGVRIENSLK 1389 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/174 (29%), Positives = 72/174 (41%), Gaps = 16/174 (9%) Query 755 TVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLP-NDDTLRVEA 813 T D IN+ VV+ S + G+Q G DG D S EG VLP N DT+ A Sbjct 1587 TEDGINVKDVVVESSKSLGKQLGVVS-DGVD--------SFEG----VLPINTDTVLSVA 1633 Query 814 FEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLTSIKWADNNCYLATALLTLQQIELK 871 E F + A K + YP V G + DNNC++ + LQ ++ Sbjct 1634 PEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQYLKPT 1693 Query 872 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS 925 F L + + G+ F + I + G+ GD E +S L ++ DS Sbjct 1694 FKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDS 1747 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 42/176 (24%), Positives = 72/176 (41%), Gaps = 13/176 (7%) Query 845 GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTV 904 G+ + +DNNC+++T L+ LQ +L + +Q + G+ + + Sbjct 1051 GVRVLDQSDNNCWISTTLVQLQLTKLLDDSIEMQ----LFKVGKVDSIVQKCYELSHLIS 1106 Query 905 GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKG 964 G LGD + +S L + +C + C CG++ G ++ + F+KG Sbjct 1107 GSLGDSGKLLSELLKEKY--TCSITFEMSCD-CGKKFDDQVG---CLFWIMPYTKLFQKG 1160 Query 965 VQIPCTCGKQATKYLVQQESPFVMMSAP-PAQYELKHGTFTCASEYTGNYQCGHYK 1019 C C K T LV + V + P P + C+S Y G GHY+ Sbjct 1161 E--CCICHKMQTYKLVSMKGTGVFVQDPAPIDIDAFPVKPICSSVYLGVKGSGHYQ 1214 >sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus NL63 OX=277944 GN=1a PE=1 SV=1 Length=4060 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 145/515 (28%), Positives = 228/515 (44%), Gaps = 66/515 (13%) Query 1445 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS-FKWDLTAF 1503 C GY ST YC S+ C +CL + + I L F Sbjct 1999 CGDIVSGYEKST-FNKDIYCGNSMVCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPF 2057 Query 1504 GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMV 1563 ++ + ++ RF + +A + F S+ H W + P + Sbjct 2058 VILVILLIFGNMYLRFGLLYFVAQFISTFGSFLGFH--QKQWFL-------HFVPFDVLC 2108 Query 1564 RMYIFFASFYYVWKSYV---HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 1620 F A+F V K + H++ GCN++ C+ C K R RV TI+NG+ +SFYV A Sbjct 2109 NE--FLATFI-VCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNA 2165 Query 1621 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 1680 NGG FC HN+ CVNCD+F G+TFI+ ++AR+L K + PT + I+D V N Sbjct 2166 NGGTCFCNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVN 2225 Query 1681 GSIHLY---------FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 1731 G LY FD K + L + L+N N GS N+ Sbjct 2226 GFYRLYSGDTFWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGS---NI--------- 2273 Query 1732 EESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKL 1791 + K+A VY+SQL+C+PI L++ L+S + S + + AYV+ ++F Sbjct 2274 --TQIKNACVYFSQLLCEPIKLVNSELLSTL--SVDFNGVLHKAYVDVLCNSF------- 2322 Query 1792 KTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDS 1851 EL N+S+ +T G SD D V + +H+ D+ ++ S Sbjct 2323 -------FKELTANMSMAECKATL------GLTVSD---DDFVSAVANAHRYDVLLSDLS 2366 Query 1852 CNNYMLTYNKVEN-MTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQ 1910 NN+ ++Y K E+ ++ D+ C+ ++ +N V +I ++W VKDF +LS++ +K Sbjct 2367 FNNFFISYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKY 2426 Query 1911 IRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 + K L F LT + + V T I K G Sbjct 2427 LVKTTKAKGLTFLLTFNDNQAITQVPATSIVAKQG 2461 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/171 (35%), Positives = 84/171 (49%), Gaps = 9/171 (5%) Query 175 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 234 G D + +++ T+ V + ++ EV F+ Y NV DI V Sbjct 1228 GVFDIKNSSVNTVCFVDVDFH---SVEIEAGEVKPFAVY----KNVKFYLGDISHLVNCV 1280 Query 235 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 294 VVNAAN L HGGGVA A++ T +Q S DYI++NGPLKVG +L Sbjct 1281 SFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLECEKF-- 1338 Query 295 HCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLR 345 + +VVGP K E L+++ ++ + L PLLS GIFG +SL+ Sbjct 1339 NVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIENSLK 1389 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/174 (29%), Positives = 72/174 (41%), Gaps = 16/174 (9%) Query 755 TVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLP-NDDTLRVEA 813 T D IN+ VV+ S + G+Q G DG D S EG VLP N DT+ A Sbjct 1587 TEDGINVKDVVVESSKSLGKQLGVVS-DGVD--------SFEG----VLPINTDTVLSVA 1633 Query 814 FEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLTSIKWADNNCYLATALLTLQQIELK 871 E F + A K + YP V G + DNNC++ + LQ ++ Sbjct 1634 PEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQYLKPT 1693 Query 872 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS 925 F L + + G+ F + I + G+ GD E +S L ++ DS Sbjct 1694 FKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDS 1747 Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust. Identities = 42/176 (24%), Positives = 72/176 (41%), Gaps = 13/176 (7%) Query 845 GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTV 904 G+ + +DNNC+++T L+ LQ +L + +Q + G+ + + Sbjct 1051 GVRVLDQSDNNCWISTTLVQLQLTKLLDDSIEMQ----LFKVGKVDSIVQKCYELSHLIS 1106 Query 905 GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKG 964 G LGD + +S L + +C + C CG++ G ++ + F+KG Sbjct 1107 GSLGDSGKLLSELLKEKY--TCSITFEMSCD-CGKKFDDQVG---CLFWIMPYTKLFQKG 1160 Query 965 VQIPCTCGKQATKYLVQQESPFVMMSAP-PAQYELKHGTFTCASEYTGNYQCGHYK 1019 C C K T LV + V + P P + C+S Y G GHY+ Sbjct 1161 E--CCICHKMQTYKLVSMKGTGVFVQDPAPIDIDAFPVKPICSSVYLGVKGSGHYQ 1214 >sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=1a PE=3 SV=1 Length=3951 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 169/707 (24%), Positives = 301/707 (43%), Gaps = 96/707 (14%) Query 1262 ANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIA 1321 A N +K+ +++G + ++ + KPN L R+ + A G + V + I Sbjct 1626 AENFVKMGDKIGGVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIG 1680 Query 1322 NYAKPFLNKVVSTTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRI 1372 A +KV +T + +C P F TL+ L F +++ + Sbjct 1681 KAATFIADKVGGGVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSV 1740 Query 1373 KASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL 1432 AS T + K + ++ +I+WF+ S ++++ + Sbjct 1741 VASYKTVLCKVVLATL----------------------LIVWFVYTS---NPVMFTGIRV 1775 Query 1433 GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT 1492 + L S C Y++ +S +V YC C VCL DSL Y +++ Sbjct 1776 ---LDFLFEGSLCGPYKDYGKDSFDVL--RYCADDFICRVCLHDKDSLHLYKHAYSVEQV 1830 Query 1493 ISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLI 1550 A G + W Y++F F V G I Y + + NS ++ Sbjct 1831 YKD-----AASGFIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTG 1880 Query 1551 INLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVEC 1605 + + + + + F + +Y W Y VH + C TC +C + R+ R E Sbjct 1881 VCFLDWF-VQTVFSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEV 1939 Query 1606 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 1665 + +V G ++ +VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + P Sbjct 1940 SVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKP 1999 Query 1666 TDQSSYIVDSVTVKNGSIHLYFDKAG-QKTYERHSLSHFVNLDNL-RANNTKGSLPINVI 1723 T + ++VD + + ++L + A K ++ F D L +A K +L I Sbjct 2000 TAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQI 2059 Query 1724 VFDGKSKCEESS------AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYV 1777 DG C S AK+A++YY+Q +C+PIL+LDQAL ++ V+ Sbjct 2060 SNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYE------QLVVE------ 2107 Query 1778 NTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECL 1837 P+ K+++ + L+ +S+D + + + + S + ++ V+ Sbjct 2108 ---------PVS--KSVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMA 2156 Query 1838 KLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWN 1896 H D++ TGD N + +Y +TPRD G I+ A N +V + + +W Sbjct 2157 IFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWK 2214 Query 1897 VKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALK 1943 + + LS+ K + SA K+ + F +T + +QV+ T K+ ++ Sbjct 2215 FSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVE 2261 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 15/243 (6%) Query 752 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 811 ++ T D + + V+ + GQ FG Y V + + + YV D ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYAKNKIV--FTADDVEDKEILYVPTTDKSI-- 1234 Query 812 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 871 EYY ++ Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1235 --LEYYGLDAQKYV-IYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIR 1289 Query 872 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 930 F L +A+ + G+ +F A A C VG+ D ++ L +H + D L Sbjct 1290 FK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLK 1348 Query 931 -NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM 988 V C CG + L+G+EA + + + FK TCG T +++ P+++ Sbjct 1349 KRVSC-NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLL 1407 Query 989 MSA 991 + A Sbjct 1408 LFA 1410 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%) Query 167 QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV---QTIEVNSFSGYLKLTDNVYIK 223 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 971 EEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVV 1026 Query 224 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 283 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1027 IAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ--- 1080 Query 284 SCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADP 340 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD- 1139 Query 341 IHSLRVCVDTVR 352 ++ +D +R Sbjct 1140 ---FKMSIDAMR 1148 >sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=1a PE=1 SV=1 Length=3951 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 169/707 (24%), Positives = 301/707 (43%), Gaps = 96/707 (14%) Query 1262 ANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIA 1321 A N +K+ +++G + ++ + KPN L R+ + A G + V + I Sbjct 1626 AENFVKMGDKIGGVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIG 1680 Query 1322 NYAKPFLNKVVSTTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRI 1372 A +KV +T + +C P F TL+ L F +++ + Sbjct 1681 KAATFIADKVGGGVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSV 1740 Query 1373 KASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL 1432 AS T + K + ++ +I+WF+ S ++++ + Sbjct 1741 VASYKTVLCKVVLATL----------------------LIVWFVYTS---NPVMFTGIRV 1775 Query 1433 GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT 1492 + L S C Y++ +S +V YC C VCL DSL Y +++ Sbjct 1776 ---LDFLFEGSLCGPYKDYGKDSFDVL--RYCADDFICRVCLHDKDSLHLYKHAYSVEQV 1830 Query 1493 ISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLI 1550 A G + W Y++F F V G I Y + + NS ++ Sbjct 1831 YKD-----AASGFIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTG 1880 Query 1551 INLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVEC 1605 + + + + + F + +Y W Y VH + C TC +C + R+ R E Sbjct 1881 VCFLDWF-VQTVFSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEV 1939 Query 1606 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 1665 + +V G ++ +VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + P Sbjct 1940 SVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKP 1999 Query 1666 TDQSSYIVDSVTVKNGSIHLYFDKAG-QKTYERHSLSHFVNLDNL-RANNTKGSLPINVI 1723 T + ++VD + + ++L + A K ++ F D L +A K +L I Sbjct 2000 TAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQI 2059 Query 1724 VFDGKSKCEESS------AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYV 1777 DG C S AK+A++YY+Q +C+PIL+LDQAL ++ V+ Sbjct 2060 SNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYE------QLVVE------ 2107 Query 1778 NTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECL 1837 P+ K+++ + L+ +S+D + + + + S + ++ V+ Sbjct 2108 ---------PVS--KSVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMA 2156 Query 1838 KLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWN 1896 H D++ TGD N + +Y +TPRD G I+ A N +V + + +W Sbjct 2157 IFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWK 2214 Query 1897 VKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALK 1943 + + LS+ K + SA K+ + F +T + +QV+ T K+ ++ Sbjct 2215 FSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVE 2261 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 15/243 (6%) Query 752 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 811 ++ T D + + V+ + GQ FG Y V + + + YV D ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYAKNKIV--FTADDVEDKEILYVPTTDKSI-- 1234 Query 812 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 871 EYY ++ Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1235 --LEYYGLDAQKYV-IYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIR 1289 Query 872 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 930 F L +A+ + G+ +F A A C VG+ D ++ L +H + D L Sbjct 1290 FK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLK 1348 Query 931 -NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM 988 V C CG + L+G+EA + + + FK TCG T +++ P+++ Sbjct 1349 KRVSC-NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLL 1407 Query 989 MSA 991 + A Sbjct 1408 LFA 1410 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%) Query 167 QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV---QTIEVNSFSGYLKLTDNVYIK 223 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 971 EEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVV 1026 Query 224 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 283 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1027 IAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ--- 1080 Query 284 SCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADP 340 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD- 1139 Query 341 IHSLRVCVDTVR 352 ++ +D +R Sbjct 1140 ---FKMSIDAMR 1148 >sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 SV=1 Length=6629 Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 169/707 (24%), Positives = 301/707 (43%), Gaps = 96/707 (14%) Query 1262 ANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIA 1321 A N +K+ +++G + ++ + KPN L R+ + A G + V + I Sbjct 1626 AENFVKMGDKIGGVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIG 1680 Query 1322 NYAKPFLNKVVSTTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRI 1372 A +KV +T + +C P F TL+ L F +++ + Sbjct 1681 KAATFIADKVGGGVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSV 1740 Query 1373 KASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL 1432 AS T + K + ++ +I+WF+ S ++++ + Sbjct 1741 VASYKTVLCKVVLATL----------------------LIVWFVYTS---NPVMFTGIRV 1775 Query 1433 GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT 1492 + L S C Y++ +S +V YC C VCL DSL Y +++ Sbjct 1776 ---LDFLFEGSLCGPYKDYGKDSFDVL--RYCADDFICRVCLHDKDSLHLYKHAYSVEQV 1830 Query 1493 ISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLI 1550 A G + W Y++F F V G I Y + + NS ++ Sbjct 1831 YKD-----AASGFIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTG 1880 Query 1551 INLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVEC 1605 + + + + + F + +Y W Y VH + C TC +C + R+ R E Sbjct 1881 VCFLDWF-VQTVFSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEV 1939 Query 1606 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 1665 + +V G ++ +VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + P Sbjct 1940 SVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKP 1999 Query 1666 TDQSSYIVDSVTVKNGSIHLYFDKAGQ-KTYERHSLSHFVNLDNL-RANNTKGSLPINVI 1723 T + ++VD + + ++L + A K ++ F D L +A K +L I Sbjct 2000 TAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQI 2059 Query 1724 VFDGKSKCEESS------AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYV 1777 DG C S AK+A++YY+Q +C+PIL+LDQAL ++ V+ Sbjct 2060 SNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYE------QLVVE------ 2107 Query 1778 NTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECL 1837 P+ K+++ + L+ +S+D + + + + S + ++ V+ Sbjct 2108 ---------PVS--KSVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMA 2156 Query 1838 KLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWN 1896 H D++ TGD N + +Y +TPRD G I+ A N +V + + +W Sbjct 2157 IFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWK 2214 Query 1897 VKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALK 1943 + + LS+ K + SA K+ + F +T + +QV+ T K+ ++ Sbjct 2215 FSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVE 2261 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 15/243 (6%) Query 752 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 811 ++ T D + + V+ + GQ FG Y V + + + YV D ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYAKNKIV--FTADDVEDKEILYVPTTDKSI-- 1234 Query 812 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 871 EYY ++ Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1235 --LEYYGLDAQKYV-IYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIR 1289 Query 872 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 930 F L +A+ + G+ +F A A C VG+ D ++ L +H + D L Sbjct 1290 FK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLK 1348 Query 931 -NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM 988 V C CG + L+G+EA + + + FK TCG T +++ P+++ Sbjct 1349 KRVSC-NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLL 1407 Query 989 MSA 991 + A Sbjct 1408 LFA 1410 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%) Query 167 QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ---TIEVNSFSGYLKLTDNVYIK 223 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 971 EEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVV 1026 Query 224 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 283 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1027 IAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ--- 1080 Query 284 SCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADP 340 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD- 1139 Query 341 IHSLRVCVDTVR 352 ++ +D +R Sbjct 1140 ---FKMSIDAMR 1148 >sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=rep PE=3 SV=1 Length=6629 Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 169/707 (24%), Positives = 301/707 (43%), Gaps = 96/707 (14%) Query 1262 ANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIA 1321 A N +K+ +++G + ++ + KPN L R+ + A G + V + I Sbjct 1626 AENFVKMGDKIGGVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIG 1680 Query 1322 NYAKPFLNKVVSTTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRI 1372 A +KV +T + +C P F TL+ L F +++ + Sbjct 1681 KAATFIADKVGGGVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSV 1740 Query 1373 KASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL 1432 AS T + K + ++ +I+WF+ S ++++ + Sbjct 1741 VASYKTVLCKVVLATL----------------------LIVWFVYTS---NPVMFTGIRV 1775 Query 1433 GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT 1492 + L S C Y++ +S +V YC C VCL DSL Y +++ Sbjct 1776 ---LDFLFEGSLCGPYKDYGKDSFDVL--RYCADDFICRVCLHDKDSLHLYKHAYSVEQV 1830 Query 1493 ISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLI 1550 A G + W Y++F F V G I Y + + NS ++ Sbjct 1831 YKD-----AASGFIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTG 1880 Query 1551 INLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVEC 1605 + + + + + F + +Y W Y VH + C TC +C + R+ R E Sbjct 1881 VCFLDWF-VQTVFSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEV 1939 Query 1606 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 1665 + +V G ++ +VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + P Sbjct 1940 SVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKP 1999 Query 1666 TDQSSYIVDSVTVKNGSIHLYFDKAGQ-KTYERHSLSHFVNLDNL-RANNTKGSLPINVI 1723 T + ++VD + + ++L + A K ++ F D L +A K +L I Sbjct 2000 TAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQI 2059 Query 1724 VFDGKSKCEESS------AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYV 1777 DG C S AK+A++YY+Q +C+PIL+LDQAL ++ V+ Sbjct 2060 SNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYE------QLVVE------ 2107 Query 1778 NTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECL 1837 P+ K+++ + L+ +S+D + + + + S + ++ V+ Sbjct 2108 ---------PVS--KSVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMA 2156 Query 1838 KLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWN 1896 H D++ TGD N + +Y +TPRD G I+ A N +V + + +W Sbjct 2157 IFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWK 2214 Query 1897 VKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALK 1943 + + LS+ K + SA K+ + F +T + +QV+ T K+ ++ Sbjct 2215 FSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVE 2261 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 15/243 (6%) Query 752 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 811 ++ T D + + V+ + GQ FG Y V + + + YV D ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYAKNKIV--FTADDVEDKEILYVPTTDKSI-- 1234 Query 812 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 871 EYY ++ Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1235 --LEYYGLDAQKYV-IYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIR 1289 Query 872 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 930 F L +A+ + G+ +F A A C VG+ D ++ L +H + D L Sbjct 1290 FK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLK 1348 Query 931 -NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM 988 V C CG + L+G+EA + + + FK TCG T +++ P+++ Sbjct 1349 KRVSC-NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLL 1407 Query 989 MSA 991 + A Sbjct 1408 LFA 1410 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%) Query 167 QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ---TIEVNSFSGYLKLTDNVYIK 223 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 971 EEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVV 1026 Query 224 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 283 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1027 IAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ--- 1080 Query 284 SCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADP 340 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD- 1139 Query 341 IHSLRVCVDTVR 352 ++ +D +R Sbjct 1140 ---FKMSIDAMR 1148 >sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1 Length=6631 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 142/549 (26%), Positives = 244/549 (44%), Gaps = 60/549 (11%) Query 1411 IIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPC 1470 +I+WF+ S ++++ + + L S C Y + +S +V YC G C Sbjct 1759 LIVWFIYTS---NPVVFTGIRV---LDFLFEGSLCGPYNDYGKDSFDVL--RYCAGDFTC 1810 Query 1471 SVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAI 1528 VCL DSL Y +++ A G+ W Y++F F V G I Sbjct 1811 RVCLHDRDSLHLYKHAYSVEQIYKD-----AASGINFNWNWLYLVFLILFVKPVAGFVII 1865 Query 1529 MQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVV 1583 Y + + +S ++ + + + + + F + +Y W Y VH + Sbjct 1866 -----CYCVKYLVLSSTVLQTGVGFLDWF-VKTVFTHFNFMGAGFYFWLFYKIYVQVHHI 1919 Query 1584 DGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAG 1643 C TC +C + R+ R E + +V G ++ +VY N G FCK HNW C NCD + Sbjct 1920 LYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQ 1979 Query 1644 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKA-GQKTYERHSLSH 1702 +TF+S EVA +LS + KR + PT + ++V V + ++L + A K ++ Sbjct 1980 NTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVDDFVNLKYKAAIPGKDNASSAVKC 2039 Query 1703 FVNLDNL-RANNTKGSLPINVIVFDGKSKCEESS------AKSASVYYSQLMCQPILLLD 1755 F D L +A K +L I DG C S AK+A+VYY+Q +C+PIL+LD Sbjct 2040 FSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKNAAVYYAQYLCKPILILD 2099 Query 1756 QALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTF 1815 QAL + P+ K+++ + L+ +S+D + Sbjct 2100 QAL---------------------YEQLIVEPVS--KSVIDKVCSILSNIISVDTAALNY 2136 Query 1816 ISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACI 1874 + + + S + ++ V+ H ++E TGD N + +Y + +TPRD G I Sbjct 2137 KAGTLRDALLSITKDEEAVDMAIFCHNHEVEYTGDGFTNVIPSYGMDTDKLTPRDRGFLI 2196 Query 1875 DCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVN 1934 + A N +V + + +W D + LS+ K + SA K+ F +T + +QV++ Sbjct 2197 NADASIANLRVKNAPPV--VWKFSDLIKLSDSCLKYLISATVKSGGRFFITKSGAKQVIS 2254 Query 1935 VVTTKIALK 1943 T K+ ++ Sbjct 2255 CHTQKLLVE 2263 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/242 (24%), Positives = 108/242 (45%), Gaps = 13/242 (5%) Query 752 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 811 ++ T D + + V+ + GQ FG + A + + E K +P D + Sbjct 1182 IYLTEDGVKYRSVVLKPGDSLGQ-FGQVF---ARNKVVFSADDVEDKEILFIPTTDKTIL 1237 Query 812 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 871 E Y+ D Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1238 E----YYGLDAQKYVTYLQTL--AQKWDVQYRDNFVILEWRDGNCWISSAIVLLQAAKIR 1291 Query 872 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 930 F L +A+ + G+ +F A A CN VG+ D ++ L +H + D +L Sbjct 1292 FK-GFLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLANLAEHFDADYTNALLK 1350 Query 931 NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 V CG + L+G+EA + + + FK TCG +T +++ P++++ Sbjct 1351 KCVSCNCGVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPTCGASSTDEVIEASLPYLLL 1410 Query 990 SA 991 A Sbjct 1411 FA 1412 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/180 (28%), Positives = 80/180 (44%), Gaps = 28/180 (16%) Query 191 QPQLEMELTPVVQ---------------TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVK 235 +PQ+E E T VV+ T E F Y ++ + A ++E K+ Sbjct 981 EPQVEQEPTLVVKAQREKKAKKFKVKPATCEKPKFLEYKTCVGDLAVVIAKALDEFKEF- 1039 Query 236 PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH 295 +VNAAN ++ HGGGVA A+ DY+ +GP + V Sbjct 1040 --CIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFVKGIQ 1094 Query 296 CL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADPIHSLRVCVDTVR 352 C+ +VVGP + L +AY++ V+ + P+LS+GIFG D ++ +D +R Sbjct 1095 CVNNVVGPRHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGVD----FKISIDAMR 1150 >sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=1a PE=1 SV=1 Length=3953 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 142/549 (26%), Positives = 244/549 (44%), Gaps = 60/549 (11%) Query 1411 IIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPC 1470 +I+WF+ S ++++ + + L S C Y + +S +V YC G C Sbjct 1759 LIVWFIYTS---NPVVFTGIRV---LDFLFEGSLCGPYNDYGKDSFDVL--RYCAGDFTC 1810 Query 1471 SVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAI 1528 VCL DSL Y +++ A G+ W Y++F F V G I Sbjct 1811 RVCLHDRDSLHLYKHAYSVEQIYKD-----AASGINFNWNWLYLVFLILFVKPVAGFVII 1865 Query 1529 MQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVV 1583 Y + + +S ++ + + + + + F + +Y W Y VH + Sbjct 1866 -----CYCVKYLVLSSTVLQTGVGFLDWF-VKTVFTHFNFMGAGFYFWLFYKIYVQVHHI 1919 Query 1584 DGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAG 1643 C TC +C + R+ R E + +V G ++ +VY N G FCK HNW C NCD + Sbjct 1920 LYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQ 1979 Query 1644 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKA-GQKTYERHSLSH 1702 +TF+S EVA +LS + KR + PT + ++V V + ++L + A K ++ Sbjct 1980 NTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVDDFVNLKYKAAIPGKDNASSAVKC 2039 Query 1703 FVNLDNL-RANNTKGSLPINVIVFDGKSKCEESS------AKSASVYYSQLMCQPILLLD 1755 F D L +A K +L I DG C S AK+A+VYY+Q +C+PIL+LD Sbjct 2040 FSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKNAAVYYAQYLCKPILILD 2099 Query 1756 QALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTF 1815 QAL + P+ K+++ + L+ +S+D + Sbjct 2100 QAL---------------------YEQLIVEPVS--KSVIDKVCSILSNIISVDTAALNY 2136 Query 1816 ISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACI 1874 + + + S + ++ V+ H ++E TGD N + +Y + +TPRD G I Sbjct 2137 KAGTLRDALLSITKDEEAVDMAIFCHNHEVEYTGDGFTNVIPSYGMDTDKLTPRDRGFLI 2196 Query 1875 DCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVN 1934 + A N +V + + +W D + LS+ K + SA K+ F +T + +QV++ Sbjct 2197 NADASIANLRVKNAPPV--VWKFSDLIKLSDSCLKYLISATVKSGGRFFITKSGAKQVIS 2254 Query 1935 VVTTKIALK 1943 T K+ ++ Sbjct 2255 CHTQKLLVE 2263 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/242 (24%), Positives = 108/242 (45%), Gaps = 13/242 (5%) Query 752 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 811 ++ T D + + V+ + GQ FG + A + + E K +P D + Sbjct 1182 IYLTEDGVKYRSVVLKPGDSLGQ-FGQVF---ARNKVVFSADDVEDKEILFIPTTDKTIL 1237 Query 812 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 871 E Y+ D Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1238 E----YYGLDAQKYVTYLQTL--AQKWDVQYRDNFVILEWRDGNCWISSAIVLLQAAKIR 1291 Query 872 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 930 F L +A+ + G+ +F A A CN VG+ D ++ L +H + D +L Sbjct 1292 FK-GFLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLANLAEHFDADYTNALLK 1350 Query 931 NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 989 V CG + L+G+EA + + + FK TCG +T +++ P++++ Sbjct 1351 KCVSCNCGVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPTCGASSTDEVIEASLPYLLL 1410 Query 990 SA 991 A Sbjct 1411 FA 1412 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/180 (28%), Positives = 80/180 (44%), Gaps = 28/180 (16%) Query 191 QPQLEMELTPVVQ---------------TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVK 235 +PQ+E E T VV+ T E F Y ++ + A ++E K+ Sbjct 981 EPQVEQEPTLVVKAQREKKAKKFKVKPATCEKPKFLEYKTCVGDLAVVIAKALDEFKEF- 1039 Query 236 PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH 295 +VNAAN ++ HGGGVA A+ DY+ +GP + V Sbjct 1040 --CIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFVKGIQ 1094 Query 296 CL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADPIHSLRVCVDTVR 352 C+ +VVGP + L +AY++ V+ + P+LS+GIFG D ++ +D +R Sbjct 1095 CVNNVVGPRHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGVD----FKISIDAMR 1150 >sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=1a PE=1 SV=1 Length=4017 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 133/496 (27%), Positives = 222/496 (45%), Gaps = 67/496 (14%) Query 1445 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----L 1500 C G + Y NS+ + A C SI C CL+ D L + L+ S W+ L Sbjct 1921 CNGAVQAYKNSSFIKSAV-CGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQL 1979 Query 1501 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 1560 + F +A + Y+ R F + ++ + L+ SYF ++ SW + ++V IS Sbjct 1980 SYFAFLAVFGNNYV---RCFLMYFVSQYLNLWLSYFG--YVEYSWFL----HVVNFESIS 2030 Query 1561 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 1620 A + + K H+V C++ +C C + R TR+ +VNG ++ YV+A Sbjct 2031 AEFVIVVIVVKAVLALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHA 2087 Query 1621 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 1680 NG FCK HN+ C NCD++ +TFI DE+ RDLS K+ + TD+S V V + Sbjct 2088 NGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSD 2147 Query 1681 GSIHLY---------FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 1731 G Y +D +K + L + LD+ + GS NV Sbjct 2148 GFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV--------- 2198 Query 1732 EESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKL 1791 ++A VY+SQL+ +PI +++ L+ D+ S + +F+A N ++FNV + + Sbjct 2199 -----RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSEC 2251 Query 1792 KTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDS 1851 K L E + +L+ STF A +H+ I +T S Sbjct 2252 KNL-----DECYRACNLNVSFSTFEMAVNN------------------AHRFGILITDRS 2288 Query 1852 CNNYMLTYNK--VENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRK 1909 NN+ + K ++ D+G C+ A+ +NA+V +++W +DF +LS +K Sbjct 2289 FNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQK 2348 Query 1910 QIRSAAKKNNLPFKLT 1925 + + + F LT Sbjct 2349 VLVKTFVEEGVNFSLT 2364 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/288 (24%), Positives = 123/288 (43%), Gaps = 38/288 (13%) Query 168 QTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADI 227 + V QQ E+N+++ + ++ P+ + + P + +++ + G L + N Sbjct 1293 EKVEQQPIVEENKSSIEKEEIQ-SPKNDDLILPFYKAGKLSFYQGALDVLINF------- 1344 Query 228 VEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVL 287 ++P V+VNAAN LKH GGVA A++ T + S DY+ N + G + Sbjct 1345 ------LEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFF 1398 Query 288 SGHNLAKH--CLHVVGPNVNKGEDIQLLKSAYENFNQHE-VLLAPLLSAGIFGADPIHSL 344 N+ +H L+ VGP L + Y+ + E +L PL+S GIF Sbjct 1399 --ENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIF-------- 1448 Query 345 RVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITESKP 402 VR L K + D+ ++ F+ E+Q + IP + + + Sbjct 1449 -----NVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHERV 1503 Query 403 SVEQRKQDDKKIKACV----EEVTTTLEETKFLTENLLLYIDINGNLH 446 SV K +++K V ++VT L + + ++ IDI+ H Sbjct 1504 SVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAH 1551 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/235 (25%), Positives = 95/235 (40%), Gaps = 34/235 (14%) Query 838 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 897 +K +NG +K DNNC++ LQ + FN +A+ + + G+ +F L Sbjct 1075 FKTTNLNGKIILKQGDNNCWINACCYQLQAFDF-FN----NEAWEKFKKGDVMDFVNLCY 1129 Query 898 AYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 A G GD + + + + K VL C CG+++ L+ AV + L Sbjct 1130 AATTLARGHSGDAEYLLELMLN--DYSTAKIVLAAKCG-CGEKEIVLE--RAVFKLTPLK 1184 Query 958 YEQFKKGVQIPC----TCGKQATKY-------LVQQESPFVMMSAPPAQYELKHGTFTCA 1006 E F GV C TC + + ++ +++P M P + + Sbjct 1185 -ESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAV-------- 1235 Query 1007 SEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKP 1061 YTG Q GHY + E YC+DG + K + + + +F N T KP Sbjct 1236 --YTGTTQNGHY-MVDDIEHGYCVDG-MGIKPLKKRCYTSTLFINANVMTRAEKP 1286 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 61/286 (21%), Positives = 107/286 (37%), Gaps = 29/286 (10%) Query 749 TIKVFTTVDNINLHTQVVDMSMTYGQQF-GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 +I V T DN+N V TYG+Q G + DVT P G+ Sbjct 1488 SIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVI-----K 1542 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSI--KWADNNCYLATALLTL 865 + ++ +Y D + SA +H +K+ V I K DNNC++ L L Sbjct 1543 AIDIDWQAHYGFRDAA----AFSASSH-DAYKFEVVTHSNFIVHKQTDNNCWINAICLAL 1597 Query 866 QQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS 925 Q+++ ++ P ++ + + F ++ GE GD E M + + Sbjct 1598 QRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDA-ELMLHKLGDLMDND 1656 Query 926 CKRVL--NVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQE 983 C+ ++ C C + + + V A L+ G C G + Q + Sbjct 1657 CEIIVTHTTACDKCAKVEKFVGPVVA----APLAIH----GTDETCVHGVSVNVKVTQIK 1708 Query 984 SPFVMMS--APPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETL 1027 + S P L+ + C Y+G+ + GHY + ++ L Sbjct 1709 GTVAITSLIGPIIGEVLEATGYIC---YSGSNRNGHYTYYDNRNGL 1751 >sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 133/496 (27%), Positives = 222/496 (45%), Gaps = 67/496 (14%) Query 1445 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----L 1500 C G + Y NS+ + A C SI C CL+ D L + L+ S W+ L Sbjct 1921 CNGAVQAYKNSSFIKSAV-CGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQL 1979 Query 1501 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 1560 + F +A + Y+ R F + ++ + L+ SYF ++ SW + ++V IS Sbjct 1980 SYFAFLAVFGNNYV---RCFLMYFVSQYLNLWLSYFG--YVEYSWFL----HVVNFESIS 2030 Query 1561 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 1620 A + + K H+V C++ +C C + R TR+ +VNG ++ YV+A Sbjct 2031 AEFVIVVIVVKAVLALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHA 2087 Query 1621 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 1680 NG FCK HN+ C NCD++ +TFI DE+ RDLS K+ + TD+S V V + Sbjct 2088 NGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSD 2147 Query 1681 GSIHLY---------FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 1731 G Y +D +K + L + LD+ + GS NV Sbjct 2148 GFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV--------- 2198 Query 1732 EESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKL 1791 ++A VY+SQL+ +PI +++ L+ D+ S + +F+A N ++FNV + + Sbjct 2199 -----RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSEC 2251 Query 1792 KTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDS 1851 K L E + +L+ STF A +H+ I +T S Sbjct 2252 KNL-----DECYRACNLNVSFSTFEMAVNN------------------AHRFGILITDRS 2288 Query 1852 CNNYMLTYNK--VENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRK 1909 NN+ + K ++ D+G C+ A+ +NA+V +++W +DF +LS +K Sbjct 2289 FNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQK 2348 Query 1910 QIRSAAKKNNLPFKLT 1925 + + + F LT Sbjct 2349 VLVKTFVEEGVNFSLT 2364 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/288 (24%), Positives = 123/288 (43%), Gaps = 38/288 (13%) Query 168 QTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADI 227 + V QQ E+N+++ + ++ P+ + + P + +++ + G L + N Sbjct 1293 EKVEQQPIVEENKSSIEKEEIQ-SPKNDDLILPFYKAGKLSFYQGALDVLINF------- 1344 Query 228 VEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVL 287 ++P V+VNAAN LKH GGVA A++ T + S DY+ N + G + Sbjct 1345 ------LEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFF 1398 Query 288 SGHNLAKH--CLHVVGPNVNKGEDIQLLKSAYENFNQHE-VLLAPLLSAGIFGADPIHSL 344 N+ +H L+ VGP L + Y+ + E +L PL+S GIF Sbjct 1399 --ENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIF-------- 1448 Query 345 RVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITESKP 402 VR L K + D+ ++ F+ E+Q + IP + + + Sbjct 1449 -----NVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHERV 1503 Query 403 SVEQRKQDDKKIKACV----EEVTTTLEETKFLTENLLLYIDINGNLH 446 SV K +++K V ++VT L + + ++ IDI+ H Sbjct 1504 SVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAH 1551 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 58/235 (25%), Positives = 95/235 (40%), Gaps = 34/235 (14%) Query 838 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 897 +K +NG +K DNNC++ LQ + FN +A+ + + G+ +F L Sbjct 1075 FKTTNLNGKIILKQGDNNCWINACCYQLQAFDF-FN----NEAWEKFKKGDVMDFVNLCY 1129 Query 898 AYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 A G GD + + + + K VL C CG+++ L+ AV + L Sbjct 1130 AATTLARGHSGDAEYLLELMLN--DYSTAKIVLAAKCG-CGEKEIVLE--RAVFKLTPLK 1184 Query 958 YEQFKKGVQIPC----TCGKQATKY-------LVQQESPFVMMSAPPAQYELKHGTFTCA 1006 E F GV C TC + + ++ +++P M P + + Sbjct 1185 -ESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAV-------- 1235 Query 1007 SEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKP 1061 YTG Q GHY + E YC+DG + K + + + +F N T KP Sbjct 1236 --YTGTTQNGHY-MVDDIEHGYCVDG-MGIKPLKKRCYTSTLFINANVMTRAEKP 1286 Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust. Identities = 61/286 (21%), Positives = 107/286 (37%), Gaps = 29/286 (10%) Query 749 TIKVFTTVDNINLHTQVVDMSMTYGQQF-GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 +I V T DN+N V TYG+Q G + DVT P G+ Sbjct 1488 SIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVI-----K 1542 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSI--KWADNNCYLATALLTL 865 + ++ +Y D + SA +H +K+ V I K DNNC++ L L Sbjct 1543 AIDIDWQAHYGFRDAAAF----SASSH-DAYKFEVVTHSNFIVHKQTDNNCWINAICLAL 1597 Query 866 QQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS 925 Q+++ ++ P ++ + + F ++ GE GD E M + + Sbjct 1598 QRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDA-ELMLHKLGDLMDND 1656 Query 926 CKRVL--NVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQE 983 C+ ++ C C + + + V A L+ G C G + Q + Sbjct 1657 CEIIVTHTTACDKCAKVEKFVGPVVA----APLAIH----GTDETCVHGVSVNVKVTQIK 1708 Query 984 SPFVMMS--APPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETL 1027 + S P L+ + C Y+G+ + GHY + ++ L Sbjct 1709 GTVAITSLIGPIIGEVLEATGYIC---YSGSNRNGHYTYYDNRNGL 1751 >sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 151/587 (26%), Positives = 248/587 (42%), Gaps = 80/587 (14%) Query 1354 FFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIII 1413 F LL+ +S ++K P + +N V + NY++ N L I Sbjct 1868 FKYLLVVFMCLRKSKMPKVKVK-PPHVFRNLGAKV------RTLNYVRQLNKPALWRYIK 1920 Query 1414 WFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVC 1473 LLL + L Y ++ V+ C+G + Y NS+ V + C SI C C Sbjct 1921 LVLLL-IALYHFFYLFVSIPVVHK-----LACSGSVQAYSNSSFVK-SEVCGNSILCKAC 1973 Query 1474 LSGLDSLDTYPSLETIQITISSFKWD----LTAFGLVAEWFLAYILFTRFFYVLGLAAIM 1529 L+ D L + L+ S W+ L+ F +A + Y+ ++V + + Sbjct 1974 LASYDELADFDHLQVSWDYKSDPLWNRVIQLSYFIFLAVFGNNYVRCLLMYFV---SQYL 2030 Query 1530 QLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSS 1589 L+ SYF ++ SW + ++V IS + + K H+ CN+ Sbjct 2031 NLWLSYFG--YVKYSWFL----HVVNFESISVEFVIIVVVFKAVLALK---HIFLPCNNP 2081 Query 1590 TCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISD 1649 +C C K R TR+ +VNG ++ YV+ANG CK HN+ C NCD++ TFI D Sbjct 2082 SCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGKLCKKHNFYCKNCDSYGFDHTFICD 2141 Query 1650 EVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY---------FDKAGQKTYERHSL 1700 E+ RDLS K+ + TD+S V V +G Y +D +K + L Sbjct 2142 EIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYRFYVGEEFTAYDYDVKHKKYSSQEVL 2201 Query 1701 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 1760 LD+ N GS +S ++ VY+SQL+ +PI +++ L+ Sbjct 2202 KTMFLLDDFIVYNPSGS--------------SLASVRNVCVYFSQLIGRPIKIVNSELLE 2247 Query 1761 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 1820 D+ S + +F+A N ++FNV + + K L E K +LD STF A Sbjct 2248 DL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL-----EECYKLCNLDVTFSTFEMAIN 2300 Query 1821 QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNK--VENMTPRDLGACIDCSA 1878 +H+ I +T S NN+ + K ++ D+G C+ A Sbjct 2301 N------------------AHRFGILITDRSFNNFWPSKIKPGSSGVSAMDIGKCMTFDA 2342 Query 1879 RHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLT 1925 + +NA+V +++W +DF +LS +K + + + F LT Sbjct 2343 KIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEEGVNFSLT 2389 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/231 (24%), Positives = 105/231 (45%), Gaps = 27/231 (12%) Query 234 VKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA 293 ++P V+VNAAN L+H GGVA A++ T + S +Y+ ++ + G + + N+ Sbjct 1356 LEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLF--ENVL 1413 Query 294 KH--CLHVVGPNVNKGEDIQLLKSAYENFNQHE-VLLAPLLSAGIFGADPIHSLRVCVDT 350 +H L+ VGP L + Y+ + + +L PL+S GIF Sbjct 1414 EHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIF-------------K 1460 Query 351 VRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITESKPSVEQRK 408 V+ V L K + D+ ++ F+ E+ + IP + + + + + SV K Sbjct 1461 VKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNGTIPIKVTEDTVNQKRVSVALDK 1520 Query 409 QDDKKIKACV----EEVTTTLEETKFLTENLLLYIDINGNLH---PDSATL 452 +++K V ++VT L + E ++ +D++ N + P++A Sbjct 1521 TYGEQLKGTVVIKDKDVTNQLPSVSDVGEKVVKALDVDWNAYYGFPNAAAF 1571 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 49/198 (25%), Positives = 80/198 (40%), Gaps = 14/198 (7%) Query 749 TIKVFTTVDNINLHTQVVDMSMTYGQQF-GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 TI + T D +N V + TYG+Q G + DVT P S G+ Sbjct 1499 TIPIKVTEDTVNQKRVSVALDKTYGEQLKGTVVIKDKDVTNQLPSVSDVGEKVV-----K 1553 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQV--NGLTSIKWADNNCYLATALLTL 865 L V+ YY + + SA +H +++ V N K DNNC++ L L Sbjct 1554 ALDVDWNAYYGFPNAAAF----SASSH-DAYEFDVVTHNNFIVHKQTDNNCWVNAICLAL 1608 Query 866 QQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS 925 Q+++ + P ++ + + A F ++ T G+ GD T+ L + DS Sbjct 1609 QRLKPTWKFPGVKSLWDAFLTRKTAGFVHMLYHISGLTKGQPGDAELTLHKLVDLMSSDS 1668 Query 926 CKRVLN-VVCKTCGQQQT 942 V + C C + +T Sbjct 1669 AVTVTHTTACDKCAKVET 1686 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 70/277 (25%), Positives = 108/277 (39%), Gaps = 26/277 (9%) Query 838 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 897 +K +NG +K DNNC++ LQ + FN L D + + +FC L Sbjct 1099 FKTTNLNGKIILKQQDNNCWINACCYQLQAFDF-FNHD-LWDGFKKDDVMPFVDFCYAAL 1156 Query 898 AYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 G+ + ETM + A K L+ C CG ++ L E ++ T Sbjct 1157 TLKQGDSGDAEYLLETMLNDYSTA-----KVTLSAKCG-CGVKEIVL---ERTVFKLTPL 1207 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESPFVM----MSAPPAQYELKHGTFTCASEYTGNY 1013 +FK GV C V+ FV P +Q+ + T T + YTG Sbjct 1208 RNEFKYGVCGDCKQINMCKFASVEGSGVFVHDRIEKQTPVSQFIV---TPTMHAVYTGTT 1264 Query 1014 QCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYT----TTIKPVTYKLDGV 1069 Q GHY I YC+DG + K ++K + +F N T T ++P D Sbjct 1265 QSGHY-MIEDCIHDYCVDG-MGIKPRKHKFYTSTLFLNANVMTAKSKTMVEPPVPVEDKC 1322 Query 1070 V--CTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPN 1104 V C + +YK F + +D++ N P+ Sbjct 1323 VEDCQSPKDLILPFYKAGKVSFYQGDLDVLINFLEPD 1359 >sp|Q8ZXT3|Y1111_PYRAE Uncharacterized protein PAE1111 OS=Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2) OX=178306 GN=PAE1111 PE=4 SV=1 Length=182 Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 83/170 (49%), Gaps = 23/170 (14%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V + DI E V+ +VNAAN YL+HGGGVAGA+ + +Q ES +++ +GP+ Sbjct 10 VVLMRGDITE----VEADAIVNAANSYLEHGGGVAGAIVRKGGQVIQEESREWVRKHGPV 65 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN--FNQHEVLLA----PLLS 332 VG V S L AK+ +H VGP E I+ L A +N E+ L P +S Sbjct 66 PVGDVAVTSAGRLKAKYVIHAVGPRCGV-EPIEKLAEAVKNALLKAEELGLVSIALPAIS 124 Query 333 AGIFG----------ADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSF 372 GIFG A I + + ++R + + ++ + Y K + F Sbjct 125 TGIFGCPYDAAAEQMATAIREVAPALRSIR-RILVVLYGEEAYQKFLEVF 173 >sp|Q4J9D2|Y1252_SULAC Uncharacterized protein Saci_1252 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=Saci_1252 PE=4 SV=1 Length=181 Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 10/124 (8%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V ++N DI KV+ +VNAAN YL HGGGVA A+ ++ +Q ESD+Y+ NGP+ Sbjct 13 VILENGDIT----KVEADAIVNAANSYLSHGGGVALAIVRSGGYIIQEESDEYVRRNGPV 68 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQL---LKSAYENFNQHEV--LLAPLLSA 333 VG V + L A++ +H VGP D +L ++ + E ++ ++ + P +S Sbjct 69 PVGEVAVTTAGKLKARYVIHAVGPRYGIEGDDKLESAIRRSLEKADELKLSSIALPAIST 128 Query 334 GIFG 337 GI+G Sbjct 129 GIYG 132 >sp|Q97UU4|Y2899_SACS2 Uncharacterized protein SSO2899 OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=SSO2899 PE=4 SV=1 Length=177 Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats. Identities = 53/167 (32%), Positives = 85/167 (51%), Gaps = 19/167 (11%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 +Y+ DI E ++ +VNAAN YL+HGGGVA A+ + +Q ESD+Y+ GP+ Sbjct 10 IYLIKGDITE----IEADAIVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFGPV 65 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVN-KGEDIQLLKSAYENFNQHEVL-----LAPLLS 332 VG V S L AK+ +H VGP +GED +L + +++ + + L P +S Sbjct 66 PVGEVAVTSAGKLKAKYVIHAVGPRYGIEGED-KLESAIFKSLLKADELSLSSIAMPAIS 124 Query 333 AGIFGADPIHSLRVCVDTVR-------TNVYLAVFDKNLYDKLVSSF 372 GI+G R+ + ++ V + ++ K+ YD S F Sbjct 125 TGIYGYPFEICARIMANVLKGYKPKTLRKVMICLYTKDAYDVFKSIF 171 >sp|Q9WYX8|Y508_THEMA Uncharacterized protein TM_0508 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0508 PE=3 SV=1 Length=599 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/128 (40%), Positives = 67/128 (52%), Gaps = 13/128 (10%) Query 219 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 278 + I DI E + +VNAAN YLKHGGGVAGA+ +A + +Q ESD + G Sbjct 428 KIRIVKGDITRE----EVDAIVNAANEYLKHGGGVAGAIVRAGGSVIQEESDRIVQERGR 483 Query 279 LKVGGSCVLSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYEN-FNQHEVLLA----P 329 + G + V S L AK+ +H VGP + GED L K+ Y HE+ L P Sbjct 484 VPTGEAVVTSAGKLKAKYVIHTVGPVWRGGSHGEDELLYKAVYNALLRAHELKLKSISMP 543 Query 330 LLSAGIFG 337 +S GIFG Sbjct 544 AISTGIFG 551 >sp|Q96XY5|Y2383_SULTO Uncharacterized protein STK_23830 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=STK_23830 PE=4 SV=1 Length=182 Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats. Identities = 54/187 (29%), Positives = 89/187 (48%), Gaps = 28/187 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V I DI E ++ +VNAAN YL+HGGGVA A+ + +Q ES +Y+ GP+ Sbjct 3 VKIIKGDITE----IEAEAIVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPV 58 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVL-----LAPLLSA 333 GG V S L AK+ +H VGP + +L ++ + E L P +S Sbjct 59 PTGGVAVTSAGKLKAKYVIHAVGPRYGIEGEEKLEEAIRNALRKAEELKLSSIALPAIST 118 Query 334 GIFGADPIHSLRVCVDTV-------RTN------VYLAVFDKNLYDKLVSSF-LEMKSEK 379 GI+G + +C + + TN + ++++ + Y+ V+ F E+ EK Sbjct 119 GIYG----YPYEICAEKMVKVIKEEYTNFKHLNTIIVSLYSEEAYNIFVNIFERELAKEK 174 Query 380 QVEQKIA 386 + K++ Sbjct 175 NITLKMS 181 >sp|P0C6F3|R1A_BEV Replicase polyprotein 1a OS=Berne virus OX=11156 GN=1a PE=1 SV=1 Length=4569 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/143 (34%), Positives = 75/143 (52%), Gaps = 14/143 (10%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK--HC 296 VVN AN LKHGGG+A ++ +Q S++YI N + V + G L K + Sbjct 1715 VVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITKNKTVPVTKAIKSPGFQLGKKVNI 1774 Query 297 LHVVGPNVNKGEDIQLLKSAYENF-----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTV 351 +H VGP V+ G+ Q L A+ + +QH +L + +LS GIFG ++ +T Sbjct 1775 IHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILTS-MLSTGIFGC----TVNDSFNTF 1829 Query 352 RTNVYLAVFDKNLYDKLVSSFLE 374 +NV A DK+L +V++ +E Sbjct 1830 LSNV--ARLDKSLVVFVVTNMVE 1850 >sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156 GN=rep PE=1 SV=1 Length=6857 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/147 (33%), Positives = 77/147 (52%), Gaps = 14/147 (10%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK--HC 296 VVN AN LKHGGG+A ++ +Q S++YI N + V + G L K + Sbjct 1715 VVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITKNKTVPVTKAIKSPGFQLGKKVNI 1774 Query 297 LHVVGPNVNKGEDIQLLKSAYENF-----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTV 351 +H VGP V+ G+ Q L A+ + +QH +L + +LS GIFG ++ +T Sbjct 1775 IHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILTS-MLSTGIFGC----TVNDSFNTF 1829 Query 352 RTNVYLAVFDKNLYDKLVSSFLEMKSE 378 +NV A DK+L +V++ +E ++ Sbjct 1830 LSNV--ARLDKSLVVFVVTNMVEQYNQ 1854 >sp|Q8CAS9|PARP9_MOUSE Protein mono-ADP-ribosyltransferase PARP9 OS=Mus musculus OX=10090 GN=Parp9 PE=1 SV=2 Length=866 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/142 (34%), Positives = 64/142 (45%), Gaps = 16/142 (11%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH-CL 297 VVNAAN L HG G+AG+L K +Q ES IA G + VGG + L H + Sbjct 137 VVNAANENLLHGSGLAGSLVKTGGFEIQEESKRIIANVGKISVGGIAITGAGRLPCHLII 196 Query 298 HVVGPN---VNKGEDIQLLKSAYENFNQH--------EVLLAPLLSAGIFGADPIHSLRV 346 H VGP N I+LLK A N + + + P LS+GIF L + Sbjct 197 HAVGPRWTVTNSQTAIELLKFAIRNILDYVTKYDLRIKTVAIPALSSGIFQ----FPLDL 252 Query 347 CVDTVRTNVYLAVFDKNLYDKL 368 C + + L DK ++ L Sbjct 253 CTSIILETIRLYFQDKQMFGNL 274 >sp|P36327|POLN_EEVV3 Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain 3880) OX=36382 PE=3 SV=3 Length=2485 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/140 (34%), Positives = 70/140 (50%), Gaps = 26/140 (19%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V++NAAN + GGGV GAL K + ++ P++VG + ++ G AKH + Sbjct 1347 VIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--AAKHII 1395 Query 298 HVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIFGAD------PIH 342 H VGPN NK +I+ L AYE N N ++ + PLLS GIF + ++ Sbjct 1396 HAVGPNFNKVSEIEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLN 1455 Query 343 SLRVCVDTVRTNVYLAVFDK 362 L +DT +V + DK Sbjct 1456 HLLTALDTTDADVAIYCRDK 1475 >sp|P27282|POLN_EEVVT Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain Trinidad donkey) OX=11038 PE=1 SV=3 Length=2493 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/140 (33%), Positives = 70/140 (50%), Gaps = 26/140 (19%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V++NAAN + GGGV GAL K + ++ P++VG + ++ G AKH + Sbjct 1347 VIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--AAKHII 1395 Query 298 HVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIFGAD------PIH 342 H VGPN NK +++ L AYE N N ++ + PLLS GIF + ++ Sbjct 1396 HAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLN 1455 Query 343 SLRVCVDTVRTNVYLAVFDK 362 L +DT +V + DK Sbjct 1456 HLLTALDTTDADVAIYCRDK 1475 >sp|P36328|POLN_EEVVP Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain P676) OX=36385 PE=1 SV=2 Length=2493 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/140 (33%), Positives = 70/140 (50%), Gaps = 26/140 (19%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V++NAAN + GGGV GAL K + ++ P++VG + ++ G AKH + Sbjct 1347 VIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--AAKHII 1395 Query 298 HVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIFGAD------PIH 342 H VGPN NK +++ L AYE N N ++ + PLLS GIF + ++ Sbjct 1396 HAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLN 1455 Query 343 SLRVCVDTVRTNVYLAVFDK 362 L +DT +V + DK Sbjct 1456 HLLTALDTTDADVAIYCRDK 1475 >sp|A7MG20|YMDB_CROS8 O-acetyl-ADP-ribose deacetylase OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=ymdB PE=3 SV=1 Length=180 Score = 58.2 bits (139), Expect = 6e-08, Method: Composition-based stats. Identities = 47/158 (30%), Positives = 71/158 (45%), Gaps = 21/158 (13%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHC 296 V+VNAAN L GGGV GA+++A A+ G + G + + +L AK Sbjct 19 VIVNAANPSLMGGGGVDGAIHRAAGPALLAACRQVRQQQGECQPGHAVITEAGDLAAKAV 78 Query 297 LHVVGPNVNKGED--IQLLKSAYEN------FNQHEVLLAPLLSAGIFGADPIHSLRVCV 348 +H VGP G+D QLL AY N N + + P +S GI+G + ++ Sbjct 79 VHTVGPVWRGGQDNEPQLLADAYRNSLQLVAANGYNSVAFPAISTGIYGYPKAAAAQIAF 138 Query 349 DTVR---------TNVYLAVFDKN---LYDKLVSSFLE 374 +TV VY +D+ LY +L+ + E Sbjct 139 ETVSDYLTRHPQPKQVYFVCYDEENFLLYQRLLGQYDE 176 >sp|E1SDF1|YMDB1_PANVC O-acetyl-ADP-ribose deacetylase 1 OS=Pantoea vagans (strain C9-1) OX=712898 GN=ymdB1 PE=3 SV=1 Length=171 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 71/152 (47%), Gaps = 18/152 (12%) Query 233 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL 292 KV +VNAAN L GGGV GA+++A + E G KVG + + NL Sbjct 13 KVSAEAIVNAANSSLLGGGGVDGAIHRAGGPVILAECQLIRNRQGGCKVGDAVITGAGNL 72 Query 293 -AKHCLHVVGPNVNKG--EDIQLLKSAYE------NFNQHEVLLAPLLSAGIFGADPIHS 343 A + +H VGP + G ++ LLK AY+ +++ + + P +S GI+G + Sbjct 73 PADYVIHTVGPRWSDGRHDEDALLKRAYQSCFKLVDYHGIKTVSFPNISTGIYGFPKERA 132 Query 344 LRVCVDTVR---------TNVYLAVFDKNLYD 366 + +D ++ NV L FD YD Sbjct 133 ATIALDVIKHCIAENRTLENVNLVCFDAENYD 164 >sp|A8AI35|YMDB_CITK8 O-acetyl-ADP-ribose deacetylase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=ymdB PE=3 SV=1 Length=177 Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 49/178 (28%), Positives = 84/178 (47%), Gaps = 29/178 (16%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++++ DI + + V+VNAAN L GGGV GA+++A + Sbjct 1 MKSRIHVQHGDITQ----LTVDVIVNAANASLLGGGGVDGAIHRAAGPTLLEACKKVRQQ 56 Query 276 NGPLKVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYENFNQHEVLLA---- 328 G G + + L+G+ AK +H VGP G+ + QLL+ AY FN +++LA Sbjct 57 QGECPAGHAVITLAGNLPAKAVIHTVGPVWRGGDHNESQLLEDAY--FNSLQLVLANGYR 114 Query 329 ----PLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 370 P +S G +G + + V+TV VY +D+ LY++L++ Sbjct 115 SVAFPAISTGAYGYPRPAAAEIAVNTVADFLARHALPEQVYFVCYDEETARLYERLLT 172 >sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032) OX=693216 GN=ymdB PE=3 SV=1 Length=176 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 21/163 (13%) Query 233 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL 292 ++ V+VNAAN L GGGV GA+++A ++ G + G + + +L Sbjct 14 RIDTDVIVNAANPSLMGGGGVDGAIHRAAGPSLLAACKVVRQQQGECQPGHAVITEAGDL 73 Query 293 -AKHCLHVVGPNVNKGED--IQLLKSAYEN------FNQHEVLLAPLLSAGIFGADPIHS 343 AK +H VGP G D QLL AY N N + + P +S GI+G + Sbjct 74 AAKAVIHTVGPIWRGGHDNEPQLLADAYRNSLELVTANGYNSVAFPAISTGIYGYPKAAA 133 Query 344 LRVCVDTVR---------TNVYLAVFDKN---LYDKLVSSFLE 374 ++ +TV VY +D+ LY +L+ + E Sbjct 134 AQIAFETVSDYLTRRPQPKQVYFVCYDEENFLLYQRLLGQYDE 176 >sp|P0A8D6|YMDB_ECOLI O-acetyl-ADP-ribose deacetylase OS=Escherichia coli (strain K12) OX=83333 GN=ymdB PE=1 SV=1 Length=177 Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 79/172 (46%), Gaps = 25/172 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 +++ DI K+ V+VNAAN L GGGV GA+++A A+ G Sbjct 5 IHVVQGDIT----KLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDC 60 Query 280 KVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPL 330 G + + L+G AK +H VGP GE + QLL+ AY N N + + P Sbjct 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120 Query 331 LSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 370 +S G++G + + V TV VY +D+ +LY++L++ Sbjct 121 ISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLT 172 >sp|P0A8D7|YMDB_ECOL6 O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ymdB PE=3 SV=1 Length=177 Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 79/172 (46%), Gaps = 25/172 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 +++ DI K+ V+VNAAN L GGGV GA+++A A+ G Sbjct 5 IHVVQGDIT----KLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDC 60 Query 280 KVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPL 330 G + + L+G AK +H VGP GE + QLL+ AY N N + + P Sbjct 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120 Query 331 LSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 370 +S G++G + + V TV VY +D+ +LY++L++ Sbjct 121 ISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLT 172 >sp|P0A8D8|YMDB_ECO57 O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O157:H7 OX=83334 GN=ymdB PE=3 SV=1 Length=177 Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 79/172 (46%), Gaps = 25/172 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 +++ DI K+ V+VNAAN L GGGV GA+++A A+ G Sbjct 5 IHVVQGDIT----KLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDC 60 Query 280 KVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPL 330 G + + L+G AK +H VGP GE + QLL+ AY N N + + P Sbjct 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120 Query 331 LSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 370 +S G++G + + V TV VY +D+ +LY++L++ Sbjct 121 ISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLT 172 >sp|Q8V294|POLN_EEVVC Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain CPA201) OX=376610 PE=3 SV=3 Length=2497 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 26/140 (19%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V+VNAAN + G GV GAL + + ++ P++VG + ++ G+ +KH + Sbjct 1347 VIVNAANSKGQPGSGVCGALYRKYPESFDLQ---------PIEVGKARLVKGN--SKHLI 1395 Query 298 HVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIFGAD------PIH 342 H VGPN NK +++ L AYE N N + + PLLS GIF + ++ Sbjct 1396 HAVGPNFNKVSEVEGDKQLAEAYESIARIINDNNYRSVAIPLLSTGIFAGNKDRLMQSLN 1455 Query 343 SLRVCVDTVRTNVYLAVFDK 362 L +DT +V + DK Sbjct 1456 HLLTALDTTDADVAIYCRDK 1475 >sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonella agona (strain SL483) OX=454166 GN=ymdB PE=3 SV=1 Length=179 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 25/176 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G + G + + L AK +H VGP GE + +LL++AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEYQEAELLEAAYRNCLLLAEANHFRSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 370 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLT 172 >sp|Q460N5|PAR14_HUMAN Protein mono-ADP-ribosyltransferase PARP14 OS=Homo sapiens OX=9606 GN=PARP14 PE=1 SV=3 Length=1801 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 14/124 (11%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHC 296 VVVNA+N LKH GG+A AL+KA +Q + D + G L G + + L H Sbjct 818 VVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHV 877 Query 297 LHVVGPNVNKGED---IQLLKSAYE------NFNQHEVLLAPLLSAGIFGADPIHSLRVC 347 +H VGP + E + LL+ A + ++ + P +S+G+FG L C Sbjct 878 IHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFG----FPLGRC 933 Query 348 VDTV 351 V+T+ Sbjct 934 VETI 937 >sp|A4W960|YMDB_ENT38 O-acetyl-ADP-ribose deacetylase OS=Enterobacter sp. (strain 638) OX=399742 GN=ymdB PE=3 SV=1 Length=180 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 21/164 (13%) Query 227 IVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV 286 +V + ++ V+VNAAN L GGGV GA+++A + G G + + Sbjct 8 VVGDITTMEVDVIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQQGECAPGHAVI 67 Query 287 -LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPLLSAGIFG 337 ++G AK +H VGP GE + + L+ AY N N ++ L P +S G++G Sbjct 68 TIAGDLPAKAVIHAVGPVWQGGENHEARTLQDAYLNCLRLAAANGYKTLAFPAISTGVYG 127 Query 338 ADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLV 369 + + VDTV VY +D+ LY +L+ Sbjct 128 YPKAAAAEIAVDTVSEFLTRKPLPERVYFVCYDEENAQLYQRLL 171 >sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=ymdB PE=3 SV=2 Length=177 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 47/176 (27%), Positives = 77/176 (44%), Gaps = 25/176 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++ DI + A V +VNAAN L GGGV GA+++A + Sbjct 1 MKSRIHVLQGDITQLAVDV----IVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + NL A+ +H VGP GE + QLL AY N N ++ + Sbjct 57 QGECPTGHAVITIAGNLPARAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 370 P +S G++G + + V TV +Y +D+ LY++L++ Sbjct 117 AFPAISTGVYGFPRAAAAEIAVKTVSDFITRHALPEQIYFVCYDEENSRLYNRLLT 172 >sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=ymdB PE=3 SV=1 Length=179 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 75/176 (43%), Gaps = 25/176 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 370 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLT 172 >sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonella typhi OX=90370 GN=ymdB PE=3 SV=1 Length=179 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 75/176 (43%), Gaps = 25/176 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 370 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLT 172 >sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiella variicola (strain At-22) OX=640131 GN=ymdB PE=3 SV=1 Length=175 Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 45/156 (29%), Positives = 73/156 (47%), Gaps = 21/156 (13%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV-LSGHNLAKHC 296 V+VNAAN L GGGV GA+++A A+ + G G + + ++G A Sbjct 19 VIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGDLPASAV 78 Query 297 LHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPLLSAGIFGADPIHSLRVCV 348 +H VGP + G+ + Q L AY+N N + + P +S G++G + + V Sbjct 79 IHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAISTGVYGYPKEEAAEIAV 138 Query 349 DTV-----RTN----VYLAVFDKN---LYDKLVSSF 372 TV R N V FD+ +Y +L++S+ Sbjct 139 RTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASY 174 >sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=ymdB PE=3 SV=1 Length=175 Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 45/156 (29%), Positives = 73/156 (47%), Gaps = 21/156 (13%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV-LSGHNLAKHC 296 V+VNAAN L GGGV GA+++A A+ + G G + + ++G A Sbjct 19 VIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGDLPASAV 78 Query 297 LHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPLLSAGIFGADPIHSLRVCV 348 +H VGP + G+ + Q L AY+N N + + P +S G++G + + V Sbjct 79 IHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAISTGVYGYPKEEAAEIAV 138 Query 349 DTV-----RTN----VYLAVFDKN---LYDKLVSSF 372 TV R N V FD+ +Y +L++S+ Sbjct 139 RTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASY 174 >sp|Q0T5Z6|YMDB_SHIF8 O-acetyl-ADP-ribose deacetylase OS=Shigella flexneri serotype 5b (strain 8401) OX=373384 GN=ymdB PE=3 SV=1 Length=177 Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 25/172 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 +++ DI K+ V+VNAAN L GGGV GA+++A A+ G Sbjct 5 IHVVQGDIT----KLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDC 60 Query 280 KVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPL 330 G + + L+G AK +H VGP GE + QLL+ AY N N + + P Sbjct 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120 Query 331 LSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 370 +S G++ + + V TV VY +D+ +LY++L++ Sbjct 121 ISTGVYSYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLT 172 >sp|Q9WJC7|POLN_EEVVM Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain Mena II) OX=36384 PE=3 SV=3 Length=2499 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/140 (31%), Positives = 68/140 (49%), Gaps = 26/140 (19%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V+VNAAN + G GV GAL + + ++ P++VG + ++ G +KH + Sbjct 1347 VIVNAANSKGQPGSGVCGALYRKYPESFDLQ---------PIEVGKARLVKGS--SKHII 1395 Query 298 HVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIFGAD------PIH 342 H VGPN +K +++ L AYE N N + + PLLS GIF + ++ Sbjct 1396 HAVGPNFSKVSEVEGDKQLAEAYESIAKIINDNNYRSVAIPLLSTGIFAGNKDRLMQSLN 1455 Query 343 SLRVCVDTVRTNVYLAVFDK 362 L +DT +V + DK Sbjct 1456 HLLTALDTTDADVAIYCRDK 1475 >sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonella newport (strain SL254) OX=423368 GN=ymdB PE=3 SV=1 Length=179 Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 47/176 (27%), Positives = 75/176 (43%), Gaps = 25/176 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 370 P +S G++G + + V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEIAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLT 172 >sp|Q32E73|YMDB_SHIDS O-acetyl-ADP-ribose deacetylase OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=ymdB PE=3 SV=1 Length=177 Score = 52.4 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 48/172 (28%), Positives = 77/172 (45%), Gaps = 25/172 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 +++ DI K+ V+VN N L GGGV GA+++A A+ G Sbjct 5 IHVVQGDIT----KLAVDVIVNVTNPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDC 60 Query 280 KVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPL 330 G + + L+G AK +H VGP GE + QLL+ AY N N + + P Sbjct 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120 Query 331 LSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 370 +S G++G + + V TV VY +D+ +LY++L++ Sbjct 121 ISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLT 172 >sp|D5CE05|YMDB_ENTCC O-acetyl-ADP-ribose deacetylase OS=Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56) OX=716541 GN=ymdB PE=3 SV=1 Length=180 Score = 52.0 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 38/123 (31%), Positives = 60/123 (49%), Gaps = 9/123 (7%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV-LSGHNLAKHC 296 V+VNAAN L GGGV GA+++A + G G + + L+G AK Sbjct 19 VIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQQGECPPGHAVITLAGDLPAKAV 78 Query 297 LHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCV 348 +H VGP + G+ + +L+ AY N N ++ + P +S G++G + + V Sbjct 79 IHAVGPIWHGGDRHEASILEEAYRNCLRLAADNGYKTMAFPAISTGVYGYPKAAAATIAV 138 Query 349 DTV 351 DTV Sbjct 139 DTV 141 >sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) OX=189518 GN=LA_4133 PE=4 SV=1 Length=175 Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 82/172 (48%), Gaps = 31/172 (18%) Query 227 IVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV 286 I E+ +++ +VNAAN L GGGV GA+++A + E G KVG + + Sbjct 8 IKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGEAVI 67 Query 287 LSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYENFNQHEVLLA----------PLLS 332 + L AK +H VGP NK ED +LL +AY+N +LLA P +S Sbjct 68 TTAGRLNAKFIIHTVGPIWSGGNKNED-ELLSNAYKN----SLLLAKNHSLKTIAFPNIS 122 Query 333 AGIFGADPIHSLRVCVDTVR---------TNVYLAVFD-KNL--YDKLVSSF 372 GI+ + ++ + +V V+ FD +NL Y+KL+ ++ Sbjct 123 TGIYHFPKERAAKIAIQSVTEFLKQDNQIQTVFFVCFDFENLEIYNKLLQTY 174 >sp|Q72M93|Y3295_LEPIC Macro domain-containing protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=LIC_13295 PE=4 SV=1 Length=175 Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 82/172 (48%), Gaps = 31/172 (18%) Query 227 IVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV 286 I E+ +++ +VNAAN L GGGV GA+++A + E G KVG + + Sbjct 8 IKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGEAVI 67 Query 287 LSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYENFNQHEVLLA----------PLLS 332 + L AK +H VGP NK ED +LL +AY+N +LLA P +S Sbjct 68 TTAGRLNAKFIIHTVGPIWSGGNKNED-ELLSNAYKN----SLLLAKNHSLKTIAFPNIS 122 Query 333 AGIFGADPIHSLRVCVDTVR---------TNVYLAVFD-KNL--YDKLVSSF 372 GI+ + ++ + +V V+ FD +NL Y+KL+ ++ Sbjct 123 TGIYHFPKERAAKIAIQSVTKFLKQDNQIQTVFFVCFDFENLEIYNKLLQTY 174 >sp|B5RBF3|YMDB_SALG2 O-acetyl-ADP-ribose deacetylase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=ymdB PE=3 SV=1 Length=179 Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 47/176 (27%), Positives = 75/176 (43%), Gaps = 25/176 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G + G + + L AK +H VGP GE + +LL+ AY + N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRSCLLLAEANHFRSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 370 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLT 172 >sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 OX=360393 GN=1a PE=3 SV=1 Length=4445 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 6/106 (6%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK--HC 296 VVN AN LKHGGG+A ++ + S++YI L V + G L K Sbjct 1669 VVNPANNQLKHGGGIAKVISCMCGPKLTSWSNNYIKQYKKLGVTCAIRSPGFQLGKGVQI 1728 Query 297 LHVVGPNVNKGEDIQLL----KSAYENFNQHEVLLAPLLSAGIFGA 338 +HVVGP + + L +S ++N +L +LS GIFG Sbjct 1729 IHVVGPKSADSDVVNKLEASWRSVFQNVKPDTTVLTSMLSTGIFGC 1774 >sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX=360393 GN=rep PE=2 SV=1 Length=6733 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 6/106 (6%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK--HC 296 VVN AN LKHGGG+A ++ + S++YI L V + G L K Sbjct 1669 VVNPANNQLKHGGGIAKVISCMCGPKLTSWSNNYIKQYKKLGVTCAIRSPGFQLGKGVQI 1728 Query 297 LHVVGPNVNKGEDIQLL----KSAYENFNQHEVLLAPLLSAGIFGA 338 +HVVGP + + L +S ++N +L +LS GIFG Sbjct 1729 IHVVGPKSADSDVVNKLEASWRSVFQNVKPDTTVLTSMLSTGIFGC 1774 >sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobacter rodentium (strain ICC168) OX=637910 GN=ymdB PE=3 SV=2 Length=177 Score = 50.1 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 45/176 (26%), Positives = 76/176 (43%), Gaps = 25/176 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++ + DI V +VNAAN L GGGV GA+++A + Sbjct 1 MNSRIHVIHGDIT----TVAVDAIVNAANPSLMGGGGVDGAIHRAAGPELLEACMTVRRQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + + L AK +H VGP GE + QLL AY N N ++ + Sbjct 57 QGECPPGHAVITAAGRLPAKAVIHTVGPIWRGGEHNEAQLLHDAYLNSLNLALANGYQSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 370 P +S G++G + + V+T+ +Y +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVNTISEFITRRASPEQIYFVCYDEETTRLYQRLLT 172 >sp|Q2EMV9|PAR14_MOUSE Protein mono-ADP-ribosyltransferase PARP14 OS=Mus musculus OX=10090 GN=Parp14 PE=1 SV=3 Length=1817 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 16/125 (13%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHC 296 VVVNAAN LKH G+A AL+KA +Q E D + G + G + + L H Sbjct 829 VVVNAANENLKHISGLAQALSKAAGPELQTECDQIVKEGGVVLPGNAVISKAGKLPCHHV 888 Query 297 LHVVGPNVNKGEDI--------QLLKSAYENFNQHEV--LLAPLLSAGIFGADPIHSLRV 346 +H VGP KG+ + ++++ + +H + P +SAGIF L + Sbjct 889 IHAVGPRW-KGDKVLECVSLLKKVVRQSLSLAEEHRCRSIAMPAVSAGIFD----FPLEL 943 Query 347 CVDTV 351 CV + Sbjct 944 CVANI 948 >sp|Q8Q0F9|Y177_METMA Macro domain-containing protein MM_0177 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) OX=192952 GN=MM_0177 PE=4 SV=1 Length=187 Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/165 (31%), Positives = 76/165 (46%), Gaps = 28/165 (17%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 277 D + I DIV K++ +VNAAN L GGGV GA+++A A+ E NG Sbjct 19 DRIRIFEGDIV----KMRVDAIVNAANNTLLGGGGVDGAIHRAAGPALLEECK---TLNG 71 Query 278 PLKVGGSCVLSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYENFNQH------EVLL 327 G + + SG+ L AK+ +H VGP KGED +LL S Y + + + Sbjct 72 -CPTGEAKITSGYLLPAKYIIHTVGPVWQGGEKGED-ELLASCYRKSLELARDYKIKTIA 129 Query 328 APLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN 363 P +S G +G + + V V+ VYL ++K+ Sbjct 130 FPAISTGAYGFPSERAAGIAVSQVKEFLQKNEIPETVYLVCYNKD 174 >sp|Q8RHQ2|Y1951_FUSNN Uncharacterized protein FN1951 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=FN1951 PE=4 SV=1 Length=175 Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 31/82 (38%), Positives = 45/82 (55%), Gaps = 7/82 (9%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCL 297 +VNAAN L+ GGGV GA+ KA + + E + G G + + G+NL K+ + Sbjct 22 IVNAANSSLEMGGGVCGAIFKAAGSELAQECKEI----GGCNTGEAVITKGYNLPNKYII 77 Query 298 HVVGPNVNKGE--DIQLLKSAY 317 H VGP + GE + + L SAY Sbjct 78 HTVGPRYSTGENREAERLASAY 99 >sp|Q8IXQ6|PARP9_HUMAN Protein mono-ADP-ribosyltransferase PARP9 OS=Homo sapiens OX=9606 GN=PARP9 PE=1 SV=2 Length=854 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/142 (31%), Positives = 65/142 (46%), Gaps = 16/142 (11%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 297 VVNAAN L HGGG+A AL KA +Q ES ++A G + G V L K + Sbjct 135 VVNAANEDLLHGGGLALALVKAGGFEIQEESKQFVARYGKVSAGEIAVTGAGRLPCKQII 194 Query 298 HVVGPNVNKGE------DIQLLKSAYENF----NQH-EVLLAPLLSAGIFGADPIHSLRV 346 H VGP + + +Q + N+ N H + + P LS+GIF L + Sbjct 195 HAVGPRWMEWDKQGCTGKLQRAIVSILNYVIYKNTHIKTVAIPALSSGIFQ----FPLNL 250 Query 347 CVDTVRTNVYLAVFDKNLYDKL 368 C T+ + +++ K + L Sbjct 251 CTKTIVETIRVSLQGKPMMSNL 272 >sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VPA0103 PE=4 SV=1 Length=170 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 41/138 (30%), Positives = 65/138 (47%), Gaps = 14/138 (10%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQ---VESDDYIATNGPLKVGGSCVLSGHNL-AK 294 +VNAAN + GGGV GA+++A A+ DD P G + + NL A+ Sbjct 19 IVNAANPRMLGGGGVDGAIHRAAGPALINACYAVDDVDGIRCPF--GDARITEAGNLNAR 76 Query 295 HCLHVVGPNVNKGEDIQ-LLKSAYEN------FNQHEVLLAPLLSAGIFGADPIHSLRVC 347 + +H VGP +K D + +L+SAY+ N + + P +S G++G P + V Sbjct 77 YVIHAVGPIYDKFADPKTVLESAYQRSLDLALANHCQSVALPAISCGVYGYPPQEAAEVA 136 Query 348 VDTVRTNVYLAVFDKNLY 365 + + Y A D Y Sbjct 137 MAVCQRPEY-AALDMRFY 153 >sp|Q8BCR0|POLN_RUBVN Non-structural polyprotein p200 OS=Rubella virus (strain RN-UK86) OX=376267 PE=3 SV=1 Length=2116 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 62/154 (40%), Gaps = 18/154 (12%) Query 213 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 272 Y + V+++ DI++ K VVVNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL 869 Query 273 IATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------ 320 P G + GH H +H V P + E LL+ AY + Sbjct 870 ----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAA 925 Query 321 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 354 + + PLL AG++G SLR + RT Sbjct 926 RRWACVACPLLGAGVYGWSAAESLRAALAATRTE 959 >sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) OX=188937 GN=MA_1614 PE=4 SV=1 Length=195 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/166 (31%), Positives = 78/166 (47%), Gaps = 22/166 (13%) Query 200 PVVQTIEVNSFSGYLKLTDN---VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGA 256 P + ++ NS L ++ N + I DI E +K +VNAAN L GGGV GA Sbjct 6 PYKKELKRNSRKRSLNMSQNSERIRIIERDITE----LKVDAIVNAANNTLLGGGGVDGA 61 Query 257 LNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGP---NVNKGEDIQL 312 +++A + E NG G + + G+ L AK+ +H VGP KGED + Sbjct 62 IHRAAGPGLLEECR---TLNG-CPTGEAKITKGYLLPAKYVIHTVGPIWQEGTKGED-EF 116 Query 313 LKSAY----ENFNQHEV--LLAPLLSAGIFGADPIHSLRVCVDTVR 352 L S Y E +++V + P +S G +G + R+ V V+ Sbjct 117 LASCYRKSLELARKYDVKTIAFPTISTGAYGFPSERAARIAVSQVK 162 >sp|Q8RB30|Y995_CALS4 Macro domain-containing protein TTE0995 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=TTE0995 PE=4 SV=1 Length=175 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 47/154 (31%), Positives = 67/154 (44%), Gaps = 31/154 (20%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 297 +VNAAN L GGGV GA++KA A+ E G G + + NL AK+ + Sbjct 20 IVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREKQGGCPTGHAVITGAGNLKAKYVI 79 Query 298 HVVGP---NVNKGEDIQLLKSAY-------ENFNQHEVLLAPLLSAGIFGADPIHSLRVC 347 H VGP N ED LL SAY + +N + P +S G +G + R+ Sbjct 80 HAVGPIWKGGNHNED-NLLASAYIESLKLADEYNVKTIAF-PSISTGAYGFPVERAARIA 137 Query 348 VDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQV 381 + ++VS +LE S K+V Sbjct 138 L------------------RVVSDYLEGSSIKEV 153 >sp|E1PL40|YMDB2_PANVC O-acetyl-ADP-ribose deacetylase 2 OS=Pantoea vagans (strain C9-1) OX=712898 GN=ymdB2 PE=3 SV=1 Length=171 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 18/146 (12%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 297 ++N AN L GGGV GA+++A + E + G KVG + + L A + + Sbjct 19 IINVANSSLLGGGGVDGAIHRAGGPVILAECQAIRSRQGGCKVGEAVITGAGTLPADYVI 78 Query 298 HVVGPNVNKG---EDIQLLK---SAYENFNQHEV--LLAPLLSAGIFG-------ADPIH 342 H VGP + G ED QL S ++ H + + P +S GI+G A + Sbjct 79 HTVGPRWSDGRHNEDTQLKSVYLSCFKLVGHHGIKTVSFPNISTGIYGFPKKRAAAIALD 138 Query 343 SLRVCVDTVRT--NVYLAVFDKNLYD 366 ++ C+ RT V L FD YD Sbjct 139 VIKHCIAENRTIEKVNLVCFDAENYD 164 >sp|P13889|POLN_RUBVT Non-structural polyprotein p200 OS=Rubella virus (strain Therien) OX=11045 PE=3 SV=5 Length=2116 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 61/154 (40%), Gaps = 18/154 (12%) Query 213 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 272 Y + V+++ DI++ K VVVNAAN L G GV GA+ A+ Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAANCRRL 869 Query 273 IATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------ 320 P G + GH H +H V P + E LL+ AY + Sbjct 870 ----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAA 925 Query 321 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 354 + + PLL AG++G SLR + RT Sbjct 926 RRWACVACPLLGAGVYGWSAAESLRAALAATRTE 959 >sp|Q8Y2K1|Y334_RALN1 Macro domain-containing protein RSc0334 OS=Ralstonia nicotianae (strain GMI1000) OX=267608 GN=RSc0334 PE=4 SV=1 Length=171 Score = 46.2 bits (108), Expect = 6e-04, Method: Composition-based stats. Identities = 40/123 (33%), Positives = 63/123 (51%), Gaps = 13/123 (11%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 297 +VNAAN L GGGV GA+++A + + A +G + G + + G L A++ + Sbjct 23 IVNAANSALLGGGGVDGAIHRAAGPELL---EACRALHG-CRTGQAKITPGFLLPARYII 78 Query 298 HVVGPNVNKG--EDIQLLKSAYEN----FNQHEV--LLAPLLSAGIFGADPIHSLRVCVD 349 H VGP G ++ LL + Y N QH+V + P +S G++G P + + V Sbjct 79 HTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTGVYGFPPQLAAPIAVR 138 Query 350 TVR 352 TVR Sbjct 139 TVR 141 >sp|O40955|POLN_RUBVR Non-structural polyprotein p200 OS=Rubella virus (strain RA27/3 vaccine) OX=11044 PE=1 SV=1 Length=2116 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 60/154 (39%), Gaps = 18/154 (12%) Query 213 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 272 Y + V+++ DI++ K VVVNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL 869 Query 273 IATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENFNQHEVL 326 P G + GH H +H V P + E LL+ AY + Sbjct 870 ----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAA 925 Query 327 LA------PLLSAGIFGADPIHSLRVCVDTVRTN 354 PLL AG++G SLR + RT Sbjct 926 RRWARVACPLLGAGVYGWSAAESLRAALAATRTE 959 >sp|Q9EYI6|Y189_STRNO Macro domain-containing protein in sno 5'region OS=Streptomyces nogalater OX=38314 PE=4 SV=1 Length=181 Score = 45.4 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 47/144 (33%), Positives = 67/144 (47%), Gaps = 16/144 (11%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT--NGPLKVGGSCVLSGHNL-AKH 295 +VNAAN L GGGV GA+++ A+ E A+ L G + + +L A+ Sbjct 19 LVNAANSSLLGGGGVDGAIHRRGGPAILAECRALRASRYGEGLPTGRAVATTAGDLDARW 78 Query 296 CLHVVGPNVNKGED-IQLLKSAY-ENFNQHEVLLA-----PLLSAGIFGADPIHSLRVCV 348 +H VGP + ED LL S Y E+ L A P LS G++ + R+ V Sbjct 79 VIHTVGPVWSSTEDRSDLLASCYRESLRLAGELGARTVAFPALSTGVYRWPMGDAARIAV 138 Query 349 DTVRTN------VYLAVFDKNLYD 366 +TVRT V +FD + YD Sbjct 139 ETVRTTPTAVEEVRFVLFDTHAYD 162 >sp|Q93SX7|Y189_ACISE Macro domain-containing protein OS=Acinetobacter sp. (strain ED45-25) OX=194927 PE=4 SV=1 Length=183 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 61/140 (44%), Gaps = 21/140 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V++ ADI A +VN+AN L GGG+ ++K M+ E G Sbjct 4 VHLIQADITAFAVHA----IVNSANKSLLGGGGLDYVIHKKAGPLMKEECVRLNQEKGGC 59 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENFNQHEVLLAPLLSAGIF 336 G + V + NL AK+ +H VGP GE + QLL AY N +F Sbjct 60 PTGQAEVTTAGNLPAKYLIHAVGPRWLDGEHNEPQLLCDAYSN--------------ALF 105 Query 337 GADPIHSLRVCVDTVRTNVY 356 A+ IH+L V + T VY Sbjct 106 KANEIHALTVSFPCISTGVY 125 >sp|Q97AU0|Y719_THEVO Uncharacterized protein TV0719 OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) OX=273116 GN=TV0719 PE=4 SV=1 Length=186 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 57/110 (52%), Gaps = 12/110 (11%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP--LKVGGSCVLSGHNL-AKH 295 +VNAAN L GGGV GA++ + +E + T P L G + + SG L AK+ Sbjct 26 IVNAANPSLMGGGGVDGAIHLKGGKTIDLECAELRRTKWPKGLPPGEADITSGGKLKAKY 85 Query 296 CLHVVGPNVNKG--EDIQLLKSAY----ENFNQHEV--LLAPLLSAGIFG 337 +H VGP + +G ED + L S+Y E H + + P +S GI+G Sbjct 86 VIHTVGP-IYRGQEEDAETLYSSYYRSLEIAKIHGIKCIAFPAISTGIYG 134 >sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=CT2219 PE=4 SV=1 Length=172 Score = 44.7 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 66/148 (45%), Gaps = 19/148 (13%) Query 216 LTDNVYIK--NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 + DNV I ADI + +VNAAN L GGGV GA+++A + + Sbjct 1 MPDNVLIHAIKADITS----LTVDAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACREL- 55 Query 274 ATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN-----FNQHEV 325 G G + + G+ L A +H VGP + G + +LL S Y N H Sbjct 56 ---GGCLTGEAKITKGYRLPATFVIHTVGPVWHGGNHGEAELLASCYRNSLKLAIEHHCR 112 Query 326 LLA-PLLSAGIFGADPIHSLRVCVDTVR 352 +A P +S GI+G + + + TVR Sbjct 113 TIAFPSISTGIYGYPVEQAAAIAITTVR 140 >sp|Q985D2|Y7730_RHILO Macro domain-containing protein mll7730 OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=mll7730 PE=4 SV=1 Length=176 Score = 44.7 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 48/147 (33%), Positives = 69/147 (47%), Gaps = 19/147 (13%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 K D + I DI K+ +VNAAN L GGGV GA+++A ++VE Sbjct 3 KALDRIRIHTGDIT----KLDVDAIVNAANTLLLGGGGVDGAIHRAAGRELEVECR---M 55 Query 275 TNGPLKVGGSCVLSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYEN------FNQHE 324 NG KVG + + G+ L A+H +H VGP KGE +LL S Y + N Sbjct 56 LNG-CKVGDAKITKGYKLPARHIIHTVGPVWQGGGKGE-AELLASCYRSSLELAAANDCR 113 Query 325 VLLAPLLSAGIFGADPIHSLRVCVDTV 351 + P +S G++ + + V TV Sbjct 114 SVAFPAISTGVYRYPKDEATGIAVGTV 140 >sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) OX=220668 GN=lp_3408 PE=4 SV=1 Length=172 Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 19/116 (16%) Query 233 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL---KVGGSCVLSG 289 K+ +VNAAN L GGGV GA+++A A+ +A PL G + + G Sbjct 13 KMTVDAIVNAANTSLLGGGGVDGAIHRAAGPAL-------LAACRPLHGCATGEAKITPG 65 Query 290 HNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPLLSAGIF 336 L AK+ +H GP G+ ++QLL ++Y N N + + P +S G++ Sbjct 66 FRLPAKYVIHTPGPVWQGGQHNELQLLANSYRNSLNLAAENHCQTVAFPSISTGVY 121 >sp|O59182|Y1513_PYRHO Uncharacterized protein PH1513 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=PH1513 PE=4 SV=1 Length=190 Score = 43.5 bits (101), Expect = 0.006, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 35/165 (21%) Query 233 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQ------------------VESDDYIA 274 K + +VNAAN YL+HGGGVA A+ KA + + +E + + Sbjct 14 KFRAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYTRISKEEMRRQLGKDWIEHGEVVV 73 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGP------NVNKGEDIQL-LKSAYENFNQHEV-- 325 T P+K+ N K+ +H VGP + +K E ++L + A + ++ V Sbjct 74 TP-PMKL-------KENGVKYVIHTVGPYCGGVWSKDKEEKLKLAILGALKKADELGVKS 125 Query 326 LLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 370 + P +SAGI+G +R + V+ + +A K +Y L S Sbjct 126 IAFPAISAGIYGCPLKEVVRTFKEVVKEFLKVANHVKEVYLVLYS 170 >sp|P27283|POLN_SINDO Polyprotein P1234 OS=Sindbis virus subtype Ockelbo (strain Edsbyn 82-5) OX=31699 PE=3 SV=2 Length=2515 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (45%), Gaps = 34/167 (20%) Query 225 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 284 AD EEA VVNAAN + G GV A+ K N+ T+ + G + Sbjct 1359 ADCQEEA-------VVNAANPLGRPGEGVCRAIYKRWPNSF---------TDSATETGTA 1402 Query 285 CVLSGHNLAKHCLHVVGPNVNK---GEDIQLLKSAYEN----FNQHEV--LLAPLLSAGI 335 + H K +H VGP+ K E ++LL++AY N+H + + PLLS GI Sbjct 1403 KLTVCH--GKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGI 1460 Query 336 FGAD------PIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMK 376 + A ++ L +D +V + DK ++ + + L++K Sbjct 1461 YAAGKDRLEVSLNCLTTALDRTDADVTIYCLDKKWKER-IDAVLQLK 1506 >sp|Q9V0Y3|Y656_PYRAB Uncharacterized protein PYRAB06560 OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=PYRAB06560 PE=4 SV=2 Length=183 Score = 43.1 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 28/162 (17%) Query 233 KVKPTVVVNAANVYLKHGGGVAGALNKA----TNNAMQVESDDYIATNGP--LKVGGSCV 286 + K +VNAAN YL+HGGGVA A+ KA + +++ ++ G ++ G V Sbjct 11 RFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIGRDWIEHGEVVV 70 Query 287 LSGHNLA----KHCLHVVGP------NVNKGEDIQL-LKSAYENFNQHEV--LLAPLLSA 333 NLA K+ +H VGP + +K + ++L + A + ++ V + P +SA Sbjct 71 TPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGVRSIAFPAISA 130 Query 334 GIFGA---DPIHSLRVCVDTVR------TNVYLAVFDKNLYD 366 GI+G + + + ++ V+ T+VYL ++ + Y+ Sbjct 131 GIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYE 172 >sp|Q99IE7|POLN_RUBVO Non-structural polyprotein p200 OS=Rubella virus (strain TO-336 vaccine) OX=376265 PE=3 SV=1 Length=2116 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 60/151 (40%), Gaps = 18/151 (12%) Query 199 TPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALN 258 TP + + Y + V+++ DI++ K VVVNAAN L G GV GA+ Sbjct 798 TPTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIF 855 Query 259 KATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQL 312 A+ + P G + GH H +H V P + E L Sbjct 856 ANATAALAADCRRL----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEAL 911 Query 313 LKSAYENF------NQHEVLLAPLLSAGIFG 337 L+ AY + + + PLL AG++G Sbjct 912 LERAYRSIVALAAARRWACVACPLLGAGVYG 942 >sp|Q99IE5|POLN_RUBVV Non-structural polyprotein p200 OS=Rubella virus (strain TO-336) OX=376264 PE=3 SV=1 Length=2116 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 60/151 (40%), Gaps = 18/151 (12%) Query 199 TPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALN 258 TP + + Y + V+++ DI++ K VVVNAAN L G GV GA+ Sbjct 798 TPTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIF 855 Query 259 KATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQL 312 A+ + P G + GH H +H V P + E L Sbjct 856 ANATAALAADCRRL----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEAL 911 Query 313 LKSAYENF------NQHEVLLAPLLSAGIFG 337 L+ AY + + + PLL AG++G Sbjct 912 LERAYRSIVALAAARRWACVACPLLGAGVYG 942 >sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=XCC3184 PE=4 SV=1 Length=179 Score = 42.7 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 38/127 (30%), Positives = 59/127 (46%), Gaps = 13/127 (10%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP---LKVGGSCVLSGHNL-A 293 V+VNAAN L GGGV GA+++A + +E+ + + P G + G +L A Sbjct 17 VIVNAANESLLGGGGVDGAIHRAAGPRL-LEACEALPEVRPGVRCPTGEIRITDGFDLKA 75 Query 294 KHCLHVVGPNVNKG---EDIQLLKSAYENFNQHEVLLA-----PLLSAGIFGADPIHSLR 345 +H H VGP G E QL +++ E ++ P +S GI+G + R Sbjct 76 RHIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLYQAAR 135 Query 346 VCVDTVR 352 + V R Sbjct 136 IAVTETR 142 >sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=XAC3343 PE=4 SV=2 Length=179 Score = 42.7 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 15/128 (12%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP---LKVGGSCVLSGHNL-A 293 V+VNAAN L GGGV GA+++A + +E+ + + P G + G +L A Sbjct 17 VIVNAANESLLGGGGVDGAIHRAAGPRL-LEACEALPQVRPGVRCPTGEIRITDGFDLKA 75 Query 294 KHCLHVVGPNVNKG---EDIQLLKSAYENFNQHEVLLA-----PLLSAGIFGADPIH-SL 344 +H H VGP G E QL +++ E ++ P +S GI+G P+H + Sbjct 76 RHIFHTVGPVWRDGRHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGY-PLHQAA 134 Query 345 RVCVDTVR 352 R+ V R Sbjct 135 RIAVTETR 142 >sp|Q6X2U2|POLN_RUBVC Non-structural polyprotein p200 OS=Rubella virus (strain BRDII) OX=376263 PE=3 SV=1 Length=2116 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/165 (27%), Positives = 69/165 (42%), Gaps = 22/165 (13%) Query 189 EVQPQLEME----LTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAAN 244 + +P++ E TP + + Y + V+++ +I++ K VVVNAAN Sbjct 784 DAEPEVACEPGGPATPARADPDSDIVESYARAAGPVHLRVRNIMDPPPGCK--VVVNAAN 841 Query 245 VYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPN 303 L G GV GA+ A+ A E +A P G + GH H +H V P Sbjct 842 EGLLAGSGVCGAIF-ASAAASLAEDCRRLA---PCPTGEAVATPGHGCGYAHIIHAVAPR 897 Query 304 VNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFG 337 + + LL+ AY + + + PLL AGI+G Sbjct 898 RPQDPAALEQSEALLERAYRSIVALAAARRWTCVACPLLGAGIYG 942 >sp|Q6X2U4|POLN_RUBVB Non-structural polyprotein p200 OS=Rubella virus (strain BRD1) OX=376262 PE=3 SV=1 Length=2116 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/165 (27%), Positives = 69/165 (42%), Gaps = 22/165 (13%) Query 189 EVQPQLEME----LTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAAN 244 + +P++ E TP + + Y + V+++ +I++ K VVVNAAN Sbjct 784 DAEPEVACEPGGPATPTRADPDSDIVESYARAAGPVHLRVRNIMDPPPGCK--VVVNAAN 841 Query 245 VYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPN 303 L G GV GA+ A+ A E +A P G + GH H +H V P Sbjct 842 EGLLAGSGVCGAIF-ASAAATLAEDCRRLA---PCPTGEAVATPGHGCGYTHIIHAVAPR 897 Query 304 VNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFG 337 + + LL+ AY + + + PLL AGI+G Sbjct 898 RPQDPAALEQSEALLERAYRSVVALAAARRWACVACPLLGAGIYG 942 >sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=Ta1105 PE=4 SV=2 Length=196 Score = 42.7 bits (99), Expect = 0.011, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 19/128 (15%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAM-----QVESDDYIATNGPLKVGGSCVLSGHNL- 292 +VNAAN L GGGV GA++ A + ++ + Y NG L G + + G+ L Sbjct 26 IVNAANSSLMGGGGVDGAIHSAAGPELNGELVKIRRERY--PNG-LPPGEAVITRGYRLK 82 Query 293 AKHCLHVVGP---NVNKGEDIQLLKS------AYENFNQHEVLLAPLLSAGIFGADPIHS 343 A H +H VGP GED L +S F H++ P LS G +G + Sbjct 83 ASHIIHTVGPVWMGGRNGEDDVLYRSYRSCLDLAREFGIHDIAF-PALSTGAYGFPFDRA 141 Query 344 LRVCVDTV 351 R+ + +V Sbjct 142 ERIAIRSV 149 >sp|Q6PAV8|MACD2_XENLA ADP-ribose glycohydrolase MACROD2 OS=Xenopus laevis OX=8355 GN=macrod2 PE=2 SV=1 Length=418 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 60/126 (48%), Gaps = 16/126 (13%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHC 296 +VNAAN L GGGV G +++A+ ++ E + G + G + + G+ L AK+ Sbjct 84 AIVNAANTSLLGGGGVDGCIHRASGPSLLAECREL----GGCETGQAKITCGYELPAKYV 139 Query 297 LHVVGPNVNKGE----DIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRV 346 +H VGP + +G Q L S Y + N + P +S GI+G + V Sbjct 140 IHTVGP-IARGHITPNHKQDLASCYNSSLTLATENDIRTIAFPCISTGIYGYPNEPAANV 198 Query 347 CVDTVR 352 + TV+ Sbjct 199 ALTTVK 204 >sp|Q9J6K9|POLN_RUBVD Non-structural polyprotein p200 OS=Rubella virus (strain Cendehill) OX=376266 PE=3 SV=2 Length=2116 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 38/137 (28%), Positives = 56/137 (41%), Gaps = 18/137 (13%) Query 213 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 272 Y + V+++ DI++ K VVVNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL 869 Query 273 IATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------ 320 P G + GH H +H V P + E LL+ AY + Sbjct 870 ----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAA 925 Query 321 NQHEVLLAPLLSAGIFG 337 + + PLL AG++G Sbjct 926 RRWAYVACPLLGAGVYG 942 >sp|Q86500|POLN_RUBVM Non-structural polyprotein p200 OS=Rubella virus (strain M33) OX=11043 PE=1 SV=2 Length=2116 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 38/137 (28%), Positives = 55/137 (40%), Gaps = 18/137 (13%) Query 213 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 272 Y + V+++ DI++ K VVVNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL 869 Query 273 IATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENFNQHEVL 326 P +G + GH H +H V P + E LL+ AY + Sbjct 870 ----APCPIGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAA 925 Query 327 LA------PLLSAGIFG 337 PLL AG++G Sbjct 926 RRWARVACPLLGAGVYG 942 >sp|Q7MTZ7|MACRO_PORGI Macro domain-containing protein PG1779 OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) OX=242619 GN=PG_1779 PE=2 SV=1 Length=164 Score = 41.2 bits (95), Expect = 0.028, Method: Composition-based stats. Identities = 36/122 (30%), Positives = 59/122 (48%), Gaps = 13/122 (11%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 297 +VNAAN L GGGV GA+++A + E NG G S + G+NL A++ + Sbjct 19 IVNAANHTLLGGGGVDGAIHRAAGPELLEECR---TLNG-CPTGESKITGGYNLPAQYVI 74 Query 298 HVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVD 349 H VGP + G+ + +LL S Y + + P +S G++ + R+ + Sbjct 75 HTVGPVWHGGQHGEPELLASCYRTSLSIALDKGLKSIAFPCISTGVYRYPKDQAARIALA 134 Query 350 TV 351 T+ Sbjct 135 TI 136 >sp|Q86924|POLN_AURAV Polyprotein P1234 OS=Aura virus OX=44158 PE=3 SV=3 Length=2499 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 35/183 (19%) Query 225 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 284 AD EEA VVNAAN K G GV A+ K + + N +V + Sbjct 1357 ADCTEEA-------VVNAANARGKPGDGVCRAIFKKWPKSFE---------NATTEVETA 1400 Query 285 CVLSGHNLAKHCLHVVGPNVNK---GEDIQLLKSAYEN----FNQHEV--LLAPLLSAGI 335 + HN K +H VGP+ K E +LL++AY + N+ + + PLLS GI Sbjct 1401 VMKPCHN--KVVIHAVGPDFRKYTLEEATKLLQNAYHDVAKIVNEKGISSVAIPLLSTGI 1458 Query 336 F--GADPIH-SLR---VCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIP 389 + GAD + SLR +D +V + DK +++ ++ + M+ E+ E K +I Sbjct 1459 YAAGADRLDLSLRCLFTALDRTDADVTIYCLDKK-WEQRIADAIRMR-EQVTELKDPDIE 1516 Query 390 KEE 392 +E Sbjct 1517 IDE 1519 >sp|Q9ZBG3|Y6450_STRCO Macro domain-containing protein SCO6450 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=SCO6450 PE=4 SV=1 Length=169 Score = 41.2 bits (95), Expect = 0.031, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 16/148 (11%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN--GPLKVGGSCVLSGHNL-AKH 295 +VNAAN L GGGV GA+++ A+ E A + L G + + +L A+ Sbjct 19 IVNAANSSLLGGGGVDGAIHRRGGPAILAECRRLRAGHLGKGLPTGRAVATTAGDLDARW 78 Query 296 CLHVVGPNVNKGEDIQ-LLKSAY-ENFNQHEVLLA-----PLLSAGIFGADPIHSLRVCV 348 +H VGP + ED LL S Y E+ + L A P +S G++ + R+ V Sbjct 79 VIHTVGPVWSATEDRSGLLASCYRESLRTADELGARTVAFPAISTGVYRWPMDDAARIAV 138 Query 349 DTVRTN------VYLAVFDKNLYDKLVS 370 +TV T + +FD Y+ + Sbjct 139 ETVATTKTSVTEIRFVLFDARAYEAFAA 166 >sp|Q8K4G6|MACD1_RAT ADP-ribose glycohydrolase MACROD1 (Fragment) OS=Rattus norvegicus OX=10116 GN=Macrod1 PE=2 SV=2 Length=258 Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust. Identities = 43/150 (29%), Positives = 70/150 (47%), Gaps = 22/150 (15%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +L + + + DI K++ +VNAAN L GGGV G +++A + + D Sbjct 82 QLNEKISLFRGDIT----KLEVDAIVNAANNSLLGGGGVDGCIHRAAGSLLT----DECR 133 Query 275 TNGPLKVGGSCVLSGHNL-AKHCLHVVGP-NVNKGEDIQL--LKSAYENFNQHEVLLA-- 328 T + G + + G+ L AKH +H VGP V + Q L+S Y + ++LL Sbjct 134 TLQNCETGKAKITCGYRLPAKHVIHTVGPIAVGQPTASQAAELRSCY--LSSLDLLLEHR 191 Query 329 ------PLLSAGIFGADPIHSLRVCVDTVR 352 P +S G+FG + V + T+R Sbjct 192 LRSVAFPCISTGVFGYPNEEAAEVVLATLR 221 >sp|P03317|POLN_SINDV Polyprotein P1234 OS=Sindbis virus OX=11034 PE=1 SV=2 Length=2513 Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 33/184 (18%) Query 225 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 284 AD EEA VVNAAN + G GV A+ K + D G ++ Sbjct 1359 ADCQEEA-------VVNAANPLGRPGEGVCRAIYKRWPTSFT----DSATETGTARMT-V 1406 Query 285 CVLSGHNLAKHCLHVVGPNVNK---GEDIQLLKSAYEN----FNQHEV--LLAPLLSAGI 335 C L K +H VGP+ K E ++LL++AY N+H + + PLLS GI Sbjct 1407 C------LGKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGI 1460 Query 336 FGAD------PIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIP 389 + A ++ L +D +V + DK +++ ++ +S +++ + EI Sbjct 1461 YAAGKDRLEVSLNCLTTALDRTDADVTIYCLDKKWKERIDAALQLKESVTELKDEDMEID 1520 Query 390 KEEV 393 E V Sbjct 1521 DELV 1524 >sp|Q9BQ69|MACD1_HUMAN ADP-ribose glycohydrolase MACROD1 OS=Homo sapiens OX=9606 GN=MACROD1 PE=1 SV=2 Length=325 Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats. Identities = 42/151 (28%), Positives = 70/151 (46%), Gaps = 24/151 (16%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +L + + + +DI K++ +VNAAN L GGGV G +++A + D Sbjct 149 QLNEKISLLRSDIT----KLEVDAIVNAANSSLLGGGGVDGCIHRAAGPLLT----DECR 200 Query 275 TNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE----DIQLLKSAYENFNQHEVLLA- 328 T K G + + G+ L AK+ +H VGP + GE L+S Y + ++LL Sbjct 201 TLQSCKTGKAKITGGYRLPAKYVIHTVGP-IAYGEPSASQAAELRSCY--LSSLDLLLEH 257 Query 329 -------PLLSAGIFGADPIHSLRVCVDTVR 352 P +S G+FG + + + T+R Sbjct 258 RLRSVAFPCISTGVFGYPCEAAAEIVLATLR 288 >sp|O28751|Y1521_ARCFU ADP-ribose glycohydrolase AF_1521 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=AF_1521 PE=1 SV=2 Length=192 Score = 40.4 bits (93), Expect = 0.071, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 68/152 (45%), Gaps = 30/152 (20%) Query 239 VVNAANVYLKHGGGVAGALNKA-----------TNNAMQVE-SDDYIATNGPLKVGGSCV 286 +VNAAN L+HGGGVA A+ KA + AM+ + DYI +G + V + Sbjct 29 IVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYI-DHGEVVVTPAMN 87 Query 287 LSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF---------NQHEVLLAPLLSAGIFG 337 L + K+ H VGP + +L + Y+ F E + P +SAGI+G Sbjct 88 LEERGI-KYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYG 146 Query 338 ADPIHSLRVCVDTVRT-------NVYLAVFDK 362 D + ++ V+ V L ++D+ Sbjct 147 CDLEKVVETFLEAVKNFKGSAVKEVALVIYDR 178 >sp|Q44020|YGB2_CUPNE Macro domain-containing protein in gbd 3'region OS=Cupriavidus necator OX=106590 PE=4 SV=1 Length=173 Score = 40.0 bits (92), Expect = 0.072, Method: Composition-based stats. Identities = 39/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 297 +VNAAN L GGGV GA++ A +A++ T G G + + +G +L A + + Sbjct 21 IVNAANSGLLGGGGVDGAIHGAGGSAIKEACRAIRDTQGGCPTGEAVITTGGHLPAPYVI 80 Query 298 HVVGP---NVNKGEDIQLLKSAYEN----FNQHEV--LLAPLLSAGIFG 337 H VGP ++GED +LL +AY N QH + L P +S GI+ Sbjct 81 HAVGPVWQGGDQGED-ELLANAYRNSIRLAAQHHLRRLAFPNISTGIYA 128 >sp|Q306W6|POLN_EEEV1 Polyprotein P1234 OS=Eastern equine encephalitis virus (strain PE-0.0155) OX=374596 PE=1 SV=3 Length=2471 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 50/186 (27%), Positives = 76/186 (41%), Gaps = 54/186 (29%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH-- 295 V+VNAAN + G GV GAL K A P+ G + +L KH Sbjct 1345 VIVNAANNKGQPGAGVCGALYKKWPGAFD---------KAPIATGTA------HLVKHTP 1389 Query 296 -CLHVVGPNVNKGEDI---QLLKSAY---------ENFNQHEVLLAPLLSAGIF--GADP 340 +H VGPN ++ ++ Q L Y E +N+ + PLLS G++ G D Sbjct 1390 NIIHAVGPNFSRMSEVEGNQKLSEVYMDIAKIINKERYNKVSI---PLLSTGVYAGGKDR 1446 Query 341 I----HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPF 396 + + L +DT +V + DK E +++ IA KE V+ Sbjct 1447 VMQSLNHLFTAMDTTDADVTIYCLDKQW-------------ETRIKDAIAR--KESVEEL 1491 Query 397 ITESKP 402 + + KP Sbjct 1492 VEDDKP 1497 >sp|Q9YBE9|Y1648_AERPE Uncharacterized protein APE_1648.1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) OX=272557 GN=APE_1648.1 PE=4 SV=2 Length=189 Score = 40.0 bits (92), Expect = 0.087, Method: Composition-based stats. Identities = 24/67 (36%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query 233 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL 292 KV+ VVN AN + GGG AGAL +A + ++ E+ P+ VG + + SG +L Sbjct 20 KVRAEAVVNPANSLMIMGGGAAGALKRAGGSVIEEEA----MRKAPVPVGEAVITSGGSL 75 Query 293 -AKHCLH 298 A+ +H Sbjct 76 PARFVIH 82 >sp|P13896|POLN_WEEV Polyprotein P1234 OS=Western equine encephalitis virus OX=11039 PE=3 SV=3 Length=2467 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 33/157 (21%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH--- 295 +VNAAN + G GV GAL + A + P+ VG + L KH Sbjct 1346 IVNAANSKGQPGSGVCGALYRKWPAAFDRQ---------PIAVGTA------RLVKHEPL 1390 Query 296 CLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIF--GADPI--- 341 +H VGPN +K + + L +AY N + + PLLS GI+ G D + Sbjct 1391 IIHAVGPNFSKMPEPEGDLKLAAAYMSIASIVNAERITKISVPLLSTGIYSGGKDRVMQS 1450 Query 342 -HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKS 377 H L DT +V + DK +++ + +S Sbjct 1451 LHHLFTAFDTTDADVTIYCLDKQWETRIIEAIHRKES 1487 >sp|Q2KHU5|MACD1_BOVIN ADP-ribose glycohydrolase MACROD1 OS=Bos taurus OX=9913 GN=MACROD1 PE=2 SV=1 Length=325 Score = 39.7 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 20/134 (15%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +L + + + DI K++ +VNAAN L GGGV G +++A + D Sbjct 149 QLNEKISLFRGDIT----KLEVDAIVNAANSSLLGGGGVDGCIHRAAGPLLT----DECR 200 Query 275 TNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE----DIQLLKSAY----ENFNQHEV 325 T + G + + G+ L AK+ +H VGP + GE L+S Y + +H + Sbjct 201 TLQNCETGKAKITCGYRLPAKYVIHTVGP-IAHGEPSASQAAELRSCYLSSLDLLLEHRL 259 Query 326 LLA--PLLSAGIFG 337 A P +S G+FG Sbjct 260 RSAAFPCISTGVFG 273 >sp|Q922B1|MACD1_MOUSE ADP-ribose glycohydrolase MACROD1 OS=Mus musculus OX=10090 GN=Macrod1 PE=1 SV=2 Length=323 Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 70/150 (47%), Gaps = 22/150 (15%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +L + + + DI K++ +VNAAN L GGGV G +++A + + D Sbjct 147 QLNEKISLYRGDIT----KLEVDAIVNAANSSLLGGGGVDGCIHRAAGSLLT----DECR 198 Query 275 TNGPLKVGGSCVLSGHNL-AKHCLHVVGP-NVNKGEDIQL--LKSAYENFNQHEVLLA-- 328 T + G + + G+ L AK+ +H VGP V + Q L+S Y + ++LL Sbjct 199 TLQNCETGKAKITCGYRLPAKYVIHTVGPIAVGQPTASQAAELRSCY--LSSLDLLLEHR 256 Query 329 ------PLLSAGIFGADPIHSLRVCVDTVR 352 P +S G+FG + V + ++R Sbjct 257 LRSVAFPCISTGVFGYPNEEAAEVVLASLR 286 >sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian hepatitis E virus (isolate Chicken/California/Meng) OX=516993 GN=ORF1 PE=3 SV=1 Length=1531 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 37/161 (23%), Positives = 63/161 (39%), Gaps = 26/161 (16%) Query 239 VVNAANVYLKHGGGVAGALNK-------ATNNAMQVESDDYIATNGPLKVGGSCVLSGHN 291 +VN AN + GGG+ G ++ + + I GP KV Sbjct 640 LVNPANRDHQPGGGLCGMFHRRWPHLWPVCGEVQDLPTGPVIFQQGPPKV---------- 689 Query 292 LAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ-HEVLLAPLLSAGIFGADPIHSLRVCVDT 350 +H GP+ D L+ Y +Q H + +PL+SAGI+ A S T Sbjct 690 -----IHAPGPDYRIKPDPDGLRRVYAVVHQAHGTVASPLISAGIYRAPARESFEAWAAT 744 Query 351 VRTNVYLAV---FDKNLYDKLVSSFLEMKSEKQVEQKIAEI 388 R L V +++ D +++ E V++ +A++ Sbjct 745 ARDGDLLVVQRSMAQHIRDFVLNEGRHRPRELHVDRAMADM 785 >sp|Q306W8|POLN_EEEV8 Polyprotein P1234 OS=Eastern equine encephalitis virus (strain PE-3.0815) OX=374597 PE=1 SV=3 Length=2474 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 49/182 (27%), Positives = 74/182 (41%), Gaps = 48/182 (26%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH--- 295 +VNAAN + G GV GAL K A P+ G + +L KH Sbjct 1346 IVNAANNKGQPGAGVCGALYKKWPGAFD---------KVPIATGTA------HLVKHTPN 1390 Query 296 CLHVVGPNVNKGEDI---QLLKSAYE------NFNQHEVLLAPLLSAGIF--GADPI--- 341 +H VGPN ++ ++ Q L Y N ++ + PLLS GI+ G D + Sbjct 1391 IIHAVGPNFSRVSEVEGNQKLSEVYMDIAKIINRERYNKVSIPLLSTGIYAGGKDRVMQS 1450 Query 342 -HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES 400 + L +DT +V + DK E +++ IA KE V+ + + Sbjct 1451 LNHLFTAMDTTDADVTIYCLDKQW-------------EARIKDAIAR--KESVEELVEDD 1495 Query 401 KP 402 KP Sbjct 1496 KP 1497 >sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=PA3693 PE=4 SV=1 Length=173 Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 51/112 (46%), Gaps = 21/112 (19%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL---KVGGSCVLSGHNL-AK 294 +VNAAN L GGGV GA+++A + +A L K G + + G L A Sbjct 19 IVNAANSSLLGGGGVDGAIHRAAGAEL-------VAACRLLHGCKTGEAKITRGFRLPAA 71 Query 295 HCLHVVGPNVNKGE--DIQLLKSAY-------ENFNQHEVLLAPLLSAGIFG 337 H +H VGP G+ + +LL S Y E V P +S GI+G Sbjct 72 HVIHTVGPVWRGGDNGEAELLASCYRRSLALAEQAGAASVAF-PAISCGIYG 122 >sp|A1Z1Q3|MACD2_HUMAN ADP-ribose glycohydrolase MACROD2 OS=Homo sapiens OX=9606 GN=MACROD2 PE=1 SV=2 Length=425 Score = 39.3 bits (90), Expect = 0.37, Method: Compositional matrix adjust. Identities = 39/132 (30%), Positives = 65/132 (49%), Gaps = 18/132 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 LT+ V + DI ++ +VNAAN L GGGV G +++A + E + Sbjct 68 LTEKVSLYRGDIT----LLEVDAIVNAANASLLGGGGVDGCIHRAAGPCLLAECRNL--- 120 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGP------NVNKGEDI-QLLKSAYENFNQHEV-- 325 NG G + + G++L AK+ +H VGP N + ED+ KS+ + ++ + Sbjct 121 NG-CDTGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKEDLANCYKSSLKLVKENNIRS 179 Query 326 LLAPLLSAGIFG 337 + P +S GI+G Sbjct 180 VAFPCISTGIYG 191 >sp|Q3UYG8|MACD2_MOUSE ADP-ribose glycohydrolase MACROD2 OS=Mus musculus OX=10090 GN=Macrod2 PE=1 SV=1 Length=475 Score = 39.3 bits (90), Expect = 0.38, Method: Compositional matrix adjust. Identities = 38/112 (34%), Positives = 55/112 (49%), Gaps = 18/112 (16%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHC 296 +VNAAN L GGGV G +++A + E + NG + G + + G++L AK+ Sbjct 86 AIVNAANASLLGGGGVDGCIHRAAGPCLLAECRNL---NG-CETGHAKITCGYDLPAKYV 141 Query 297 LHVVGP------NVNKGEDI-----QLLKSAYENFNQHEVLLAPLLSAGIFG 337 +H VGP N + ED+ LK EN N V P +S GI+G Sbjct 142 IHTVGPIARGHINGSHKEDLANCYQSSLKLVKEN-NLRSVAF-PCISTGIYG 191 >sp|Q9KHE2|Y189_STRGR Macro domain-containing protein in non 5'region OS=Streptomyces griseus OX=1911 PE=4 SV=1 Length=177 Score = 36.6 bits (83), Expect = 0.97, Method: Composition-based stats. Identities = 43/145 (30%), Positives = 62/145 (43%), Gaps = 17/145 (12%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT--NGPLKVGGSCVLSGHNL-AK 294 V+VNAAN L GGGV GA+++ + + A+ L G + + L A+ Sbjct 23 VIVNAANSSLLGGGGVDGAIHRRGGPDILAACRELRASRYGKGLPTGQAVATTAGRLDAR 82 Query 295 HCLHVVGPNVNKGEDIQ-LLKSAY-ENFNQHEVLLA-----PLLSAGIFGADPIHSLRVC 347 +H VGP + +D LL S Y E+ L A P +S GI+G R+ Sbjct 83 WIVHTVGPVFSGAQDRSALLASCYRESLRLAAELGARSIAFPAISTGIYGWPMDDGARIA 142 Query 348 VDTVRT-------NVYLAVFDKNLY 365 V TV V +FD + Y Sbjct 143 VRTVLAETVEPVEEVRFVLFDAHAY 167 >sp|Q8Y3S3|Y2759_LISMO Macro domain-containing protein lmo2759 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=lmo2759 PE=4 SV=1 Length=176 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 27/175 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 + I DI E+ + V+VNAAN L GGGV GA+++A + E + I G Sbjct 3 ITIVKGDITEQ----EVDVIVNAANSGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSC 58 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLA--------PL 330 G + + S +L A + +H VGP GE + K A + ++ P Sbjct 59 PAGEAVITSAGDLKATYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPN 118 Query 331 LSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDK---NLYDKLVSS 371 +S G++G + V + TVR + FD+ LY+KL++S Sbjct 119 ISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIKEIRFVCFDEENLKLYNKLINS 173 >sp|Q7TZB9|Y1934_MYCBO Uncharacterized protein Mb1934c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=lppD PE=4 SV=1 Length=358 Score = 37.7 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 24/83 (29%), Positives = 44/83 (53%), Gaps = 6/83 (7%) Query 218 DNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN 276 DNV + ++ + + K++ + NAAN L+H GGVA A+ +A +Q ES + Sbjct 184 DNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTE----K 239 Query 277 GPLKVGGSC-VLSGHNLAKHCLH 298 P+ +G + +G A++ +H Sbjct 240 APIGLGEAVETTAGDMPARYVIH 262 >sp|P9WK29|Y1899_MYCTU Uncharacterized protein Rv1899c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv1899c PE=1 SV=1 Length=359 Score = 37.7 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 24/83 (29%), Positives = 44/83 (53%), Gaps = 6/83 (7%) Query 218 DNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN 276 DNV + ++ + + K++ + NAAN L+H GGVA A+ +A +Q ES + Sbjct 185 DNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTE----K 240 Query 277 GPLKVGGSC-VLSGHNLAKHCLH 298 P+ +G + +G A++ +H Sbjct 241 APIGLGEAVETTAGDMPARYVIH 263 >sp|P9WK28|Y1899_MYCTO Uncharacterized protein MT1950 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1950 PE=4 SV=1 Length=374 Score = 37.7 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 24/83 (29%), Positives = 44/83 (53%), Gaps = 6/83 (7%) Query 218 DNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN 276 DNV + ++ + + K++ + NAAN L+H GGVA A+ +A +Q ES + Sbjct 200 DNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTE----K 255 Query 277 GPLKVGGSC-VLSGHNLAKHCLH 298 P+ +G + +G A++ +H Sbjct 256 APIGLGEAVETTAGDMPARYVIH 278 >sp|Q4QXJ8|POLN_EEEVF Polyprotein P1234 OS=Eastern equine encephalitis virus (strain Florida 91-469) OX=374598 PE=1 SV=3 Length=2494 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/167 (26%), Positives = 70/167 (42%), Gaps = 39/167 (23%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH-- 295 V+VNAAN + G GV GAL + A + P+ G + +L KH Sbjct 1345 VIVNAANNKGQPGSGVCGALYRKWPGAFDKQ---------PVATGKA------HLVKHSP 1389 Query 296 -CLHVVGPNVNK---GEDIQLLKSAY---------ENFNQHEVLLAPLLSAGIF--GADP 340 +H VGPN ++ E Q L Y E F + + PLLS GI+ G D Sbjct 1390 NVIHAVGPNFSRLSENEGDQKLSEVYMDIARIINNERFTKVSI---PLLSTGIYAGGKDR 1446 Query 341 I----HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQ 383 + + L +DT ++ + DK ++ + +S +++ + Sbjct 1447 VMQSLNHLFTAMDTTDADITIYCLDKQWESRIKEAITRKESVEELTE 1493 >sp|Q926Y8|Y2902_LISIN Macro domain-containing protein lin2902 OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=lin2902 PE=4 SV=1 Length=176 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 45/157 (29%), Positives = 69/157 (44%), Gaps = 23/157 (15%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH-C 296 V+VNAAN L GGGV GA+++A + E + I G G + + S +L H Sbjct 17 VIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSCPAGEAVITSAGDLKAHFI 76 Query 297 LHVVGPNVNKGEDIQLLKSAYENFNQHEV--------LLAPLLSAGIFGADPIHSLRVCV 348 +H VGP GE + K A + ++ + P +S G++G + V + Sbjct 77 IHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAEVAL 136 Query 349 DTVR-----------TNVYLAVFDKN---LYDKLVSS 371 TVR V FD+ LY+KL++S Sbjct 137 YTVRKWAEEEYDSSIKEVRFVCFDEENLTLYNKLINS 173 >sp|Q71W03|Y2748_LISMF Macro domain-containing protein LMOf2365_2748 OS=Listeria monocytogenes serotype 4b (strain F2365) OX=265669 GN=LMOf2365_2748 PE=4 SV=1 Length=176 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 69/157 (44%), Gaps = 23/157 (15%) Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHC 296 V+VNAAN L GGGV GA+++A + E + I G G + + S +L A + Sbjct 17 VIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGTCPAGEAVITSAGDLQASYI 76 Query 297 LHVVGPNVNKGEDIQLLKSAYENFNQHEVLLA--------PLLSAGIFGADPIHSLRVCV 348 +H VGP GE + K A + ++ P +S G++G + V + Sbjct 77 IHAVGPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPNISTGVYGFPKKLAAEVAL 136 Query 349 DTVRT-----------NVYLAVFDKN---LYDKLVSS 371 TVR + FD+ LY+KL++S Sbjct 137 YTVRKWAEEEYDTSIEEIRFVCFDEENLKLYNKLINS 173 >sp|A0A0D2UG83|H2AY_CAPO3 Histone macroH2A1.1 OS=Capsaspora owczarzaki (strain ATCC 30864) OX=595528 GN=CAOG_004778 PE=1 SV=1 Length=368 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/91 (32%), Positives = 46/91 (51%), Gaps = 5/91 (5%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L L +Y+ N D+ E V+ VV+ N + G V GA+ A + E + Y+ Sbjct 191 LHLGQTLYVVNGDLTE----VRCDAVVHPTNGTMSFAGQVGGAIRAAAGAGVDAEVNSYM 246 Query 274 ATNGPLKVGGSCVLSGHNL-AKHCLHVVGPN 303 + + L+V + + SGHNL +K +HV PN Sbjct 247 SEHSQLQVTKAAITSGHNLPSKWIVHVHSPN 277 >sp|B4S3G9|PDXJ_PROA2 Pyridoxine 5'-phosphate synthase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) OX=290512 GN=pdxJ PE=3 SV=1 Length=236 Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 33/119 (28%), Positives = 49/119 (41%), Gaps = 16/119 (13%) Query 1203 TSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDII-LKP 1261 T FD+++ D C +KPV + +E + E + +I+ L Sbjct 100 TEGGFDIIRHYDT------LCRYIKPVQDAGIEVSIFIEPEEEAIERAASAGAEIVELHT 153 Query 1262 ANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI 1320 SLK T T+LM I+K +R GL+ +A HGL N VP+ TI Sbjct 154 GPYSLKKTPAELETELM---------RIRKAATFARSRGLRVVAGHGLDYFNIVPFRTI 203 >sp|P26627|R1AB_CVMJD Replicase polyprotein 1ab (Fragment) OS=Murine coronavirus (strain defective JHM) OX=11143 GN=rep PE=3 SV=1 Length=500 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 45/181 (25%), Positives = 73/181 (40%), Gaps = 15/181 (8%) Query 778 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLR-VEAFEYYHTTDPSFLGRYMSALNHTK 836 P ++ D+ K++ E +T P D T V AF+ ++ S S H K Sbjct 316 PDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFK 375 Query 837 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 896 V G S NC+L + L+ +Q + L+F +Q + +AG F + Sbjct 376 ------VCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKL 429 Query 897 LAYCNKT-VGELGDVRETMSYLFQHANLDSC--KRVLNVVCKTCGQQQTTLKGVEAVMYM 953 + K+ + G +Y F L C K N C CG + L+G++AV + Sbjct 430 VKSAPKSIILPQGGYVADFAYFF----LSQCSFKVHANWRCLKCG-MELKLQGLDAVFFY 484 Query 954 G 954 G Sbjct 485 G 485 >sp|B0C385|RPOC2_ACAM1 DNA-directed RNA polymerase subunit beta' OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpoC2 PE=3 SV=1 Length=1330 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 12/82 (15%) Query 227 IVEEAKKVKPTVVVNAANVYLKHGGGVAG--ALNKATNNAMQVESDDYI----------A 274 +VEE +++ P VV + K GG V G + N+AT + + DD I A Sbjct 860 LVEEGQQIDPGAVVARTEIKAKQGGKVRGIRSGNEATRRILLMTDDDLITIETQGKATSA 919 Query 275 TNGPLKVGGSCVLSGHNLAKHC 296 + G L G V +G +A+ C Sbjct 920 SEGELLRAGDEVAAGVTVAESC 941 >sp|Q5JER1|Y1890_THEKO Uncharacterized protein TK1890 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=TK1890 PE=4 SV=1 Length=180 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 74/159 (47%), Gaps = 32/159 (20%) Query 239 VVNAANVYLKHGGGVAGALN-----------KATNNAMQVE-SDDYIATNGPLKVGGSCV 286 +VNAAN YL+HGGGVA A+ + + AM+ + D+I +G + V + Sbjct 19 IVNAANRYLEHGGGVAYAIAKAAAGDPREYIRISKEAMREQLGKDHI-EHGEVVVTPAMR 77 Query 287 LSGHNLAKHCLHVVGPNV----NKGEDIQLLKSAYENFNQHE-----VLLAPLLSAGIFG 337 L H + ++ +H VGP ++ + +L K+ + E + P +SAGI+G Sbjct 78 LEKHGI-RYVIHTVGPYCGGIWDEDKKEKLRKAILGALRKAEELGVKTIAFPAVSAGIYG 136 Query 338 A---DPIHSLRVCVDTVR------TNVYLAVFDKNLYDK 367 + + + + +D VYL ++ + Y++ Sbjct 137 CPLEEVVKTFKEVIDEFEREAGSVERVYLVLYSEKDYER 175 >sp|Q8U0P9|Y1536_PYRFU Uncharacterized protein PF1536 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=PF1536 PE=4 SV=1 Length=183 Score = 35.0 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 44/165 (27%), Positives = 76/165 (46%), Gaps = 32/165 (19%) Query 233 KVKPTVVVNAANVYLKHGGGVAGALN-----------KATNNAMQVE-SDDYIATNGPLK 280 K + +VNAAN YL+HGGGVA A+ + + AM+ + D+I +G + Sbjct 11 KFRAEAIVNAANKYLEHGGGVAYAIAKAAAGDVREYIRISKEAMREQLGKDWI-DHGEVV 69 Query 281 VGGSCVLSGHNLAKHCLHVVGP------NVNKGEDIQL-LKSAYENFNQHEV--LLAPLL 331 V L N K+ +H VGP + +K ++L + A + ++ V + P + Sbjct 70 VTPPLQLE-KNGVKYVIHTVGPYCGGSWDEDKKSKLKLAILGALKKADELGVKSIAFPAI 128 Query 332 SAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDK 367 SAGI+G + V+ V+ V+L ++ + Y+K Sbjct 129 SAGIYGCPLEKVVETFVEVVKEFLPSAKSLREVFLVLYSQEDYEK 173 >sp|Q9RS39|Y2288_DEIRA Macro domain-containing protein DR_2288 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) OX=243230 GN=DR_2288 PE=4 SV=1 Length=170 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 22/138 (16%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL----AK 294 VV AAN L GGGV G +++A + I G G + + +L K Sbjct 18 VVTAANKQLMGGGGVDGVIHRAAGPRLL----QAIRPIGGTPTGTAVITPAFDLERQGVK 73 Query 295 HCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPLLSAGIFG-----ADPI 341 + +H VGP G+ + +LL AY N + P +S G++G A PI Sbjct 74 YVIHAVGPIWRGGQHGEAELLAGAYRESLRLGVENGCRSVAFPSISTGVYGYPLDRAAPI 133 Query 342 HSLRVCVDTVRTNVYLAV 359 +L D +R++ L+V Sbjct 134 -ALATIQDFLRSHPDLSV 150 >sp|P24886|NU4LM_CAEEL NADH-ubiquinone oxidoreductase chain 4L OS=Caenorhabditis elegans OX=6239 GN=ndfl-4 PE=3 SV=2 Length=77 Score = 32.0 bits (71), Expect = 8.2, Method: Composition-based stats. Identities = 17/43 (40%), Positives = 24/43 (56%), Gaps = 2/43 (5%) Query 1496 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAV 1538 FKW F L++ F+ LF +F YVLG +M +F F+V Sbjct 13 FKWQRLIFILISLEFMMLSLFLKFSYVLG--EMMFFYFMCFSV 53 Lambda K H a alpha 0.317 0.132 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 236670339240 Results from round 2 Query= YP_009725299.1 nsp3 [Severe acute respiratory syndrome coronavirus 2] Length=1945 Score E Sequences producing significant alignments: (Bits) Value Sequences used in model and found again: sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 2604 0.0 sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp... 2603 0.0 sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi... 2518 0.0 sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 2515 0.0 sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R... 2501 0.0 sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H... 2499 0.0 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 2497 0.0 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 2497 0.0 sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2... 2489 0.0 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 2485 0.0 sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H... 1716 0.0 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 1716 0.0 sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H... 1666 0.0 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 1662 0.0 sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi... 1579 0.0 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 1579 0.0 sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H... 1510 0.0 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 1510 0.0 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 1494 0.0 sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1... 1494 0.0 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 1304 0.0 sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru... 1303 0.0 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 1302 0.0 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 1302 0.0 sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru... 1301 0.0 sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus... 1300 0.0 sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 1235 0.0 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 1234 0.0 sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru... 1234 0.0 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 1233 0.0 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 1233 0.0 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 1233 0.0 sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru... 1233 0.0 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 1232 0.0 sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus... 1231 0.0 sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus... 1231 0.0 sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus... 1231 0.0 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 1230 0.0 sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus... 1230 0.0 sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus... 1228 0.0 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 1214 0.0 sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus... 1213 0.0 sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 770 0.0 sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 770 0.0 sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious ... 769 0.0 sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious b... 769 0.0 sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 745 0.0 sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious b... 745 0.0 sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5... 574 4e-167 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 573 7e-167 sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus... 554 2e-160 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 554 2e-160 sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ... 537 4e-155 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 537 4e-155 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 525 6e-151 sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus... 524 6e-151 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 509 9e-146 sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss... 507 2e-145 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 507 2e-145 sp|A7MG20|YMDB_CROS8 O-acetyl-ADP-ribose deacetylase OS=Cronobact... 200 3e-57 sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobact... 198 6e-57 sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherich... 195 1e-55 sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobact... 195 1e-55 sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonell... 194 2e-55 sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonell... 194 2e-55 sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonell... 194 3e-55 sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonell... 194 3e-55 sp|B5RBF3|YMDB_SALG2 O-acetyl-ADP-ribose deacetylase OS=Salmonell... 192 8e-55 sp|P0A8D6|YMDB_ECOLI O-acetyl-ADP-ribose deacetylase OS=Escherich... 190 4e-54 sp|P0A8D7|YMDB_ECOL6 O-acetyl-ADP-ribose deacetylase OS=Escherich... 190 4e-54 sp|P0A8D8|YMDB_ECO57 O-acetyl-ADP-ribose deacetylase OS=Escherich... 190 4e-54 sp|A8AI35|YMDB_CITK8 O-acetyl-ADP-ribose deacetylase OS=Citrobact... 190 5e-54 sp|Q0T5Z6|YMDB_SHIF8 O-acetyl-ADP-ribose deacetylase OS=Shigella ... 189 1e-53 sp|A4W960|YMDB_ENT38 O-acetyl-ADP-ribose deacetylase OS=Enterobac... 185 3e-52 sp|D5CE05|YMDB_ENTCC O-acetyl-ADP-ribose deacetylase OS=Enterobac... 185 3e-52 sp|Q32E73|YMDB_SHIDS O-acetyl-ADP-ribose deacetylase OS=Shigella ... 184 5e-52 sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiell... 184 6e-52 sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiell... 184 6e-52 sp|E1SDF1|YMDB1_PANVC O-acetyl-ADP-ribose deacetylase 1 OS=Pantoe... 180 8e-51 sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=... 176 3e-49 sp|Q72M93|Y3295_LEPIC Macro domain-containing protein LIC_13295 O... 176 3e-49 sp|Q96XY5|Y2383_SULTO Uncharacterized protein STK_23830 OS=Sulfur... 171 3e-47 sp|Q8RB30|Y995_CALS4 Macro domain-containing protein TTE0995 OS=C... 168 3e-46 sp|Q97UU4|Y2899_SACS2 Uncharacterized protein SSO2899 OS=Saccharo... 167 5e-46 sp|E1PL40|YMDB2_PANVC O-acetyl-ADP-ribose deacetylase 2 OS=Pantoe... 166 9e-46 sp|Q8ZXT3|Y1111_PYRAE Uncharacterized protein PAE1111 OS=Pyrobacu... 164 5e-45 sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=... 164 7e-45 sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=C... 163 2e-44 sp|Q8Q0F9|Y177_METMA Macro domain-containing protein MM_0177 OS=M... 163 2e-44 sp|Q93SX7|Y189_ACISE Macro domain-containing protein OS=Acinetoba... 159 4e-43 sp|Q4J9D2|Y1252_SULAC Uncharacterized protein Saci_1252 OS=Sulfol... 158 7e-43 sp|Q9EYI6|Y189_STRNO Macro domain-containing protein in sno 5'reg... 154 2e-41 sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=... 149 6e-40 sp|Q8Y2K1|Y334_RALN1 Macro domain-containing protein RSc0334 OS=R... 149 9e-40 sp|Q9WYX8|Y508_THEMA Uncharacterized protein TM_0508 OS=Thermotog... 161 1e-39 sp|Q97AU0|Y719_THEVO Uncharacterized protein TV0719 OS=Thermoplas... 147 6e-39 sp|Q8RHQ2|Y1951_FUSNN Uncharacterized protein FN1951 OS=Fusobacte... 143 1e-37 sp|Q8IXQ6|PARP9_HUMAN Protein mono-ADP-ribosyltransferase PARP9 O... 139 6e-32 sp|Q8CAS9|PARP9_MOUSE Protein mono-ADP-ribosyltransferase PARP9 O... 139 6e-32 sp|Q460N5|PAR14_HUMAN Protein mono-ADP-ribosyltransferase PARP14 ... 140 8e-32 sp|Q2EMV9|PAR14_MOUSE Protein mono-ADP-ribosyltransferase PARP14 ... 139 2e-31 sp|P0C6F3|R1A_BEV Replicase polyprotein 1a OS=Berne virus OX=1115... 139 2e-31 sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11... 139 3e-31 sp|Q8BCR0|POLN_RUBVN Non-structural polyprotein p200 OS=Rubella v... 129 2e-28 sp|P13889|POLN_RUBVT Non-structural polyprotein p200 OS=Rubella v... 129 3e-28 sp|P36328|POLN_EEVVP Polyprotein P1234 OS=Venezuelan equine encep... 127 1e-27 sp|P36327|POLN_EEVV3 Polyprotein P1234 OS=Venezuelan equine encep... 127 1e-27 sp|P27282|POLN_EEVVT Polyprotein P1234 OS=Venezuelan equine encep... 127 1e-27 sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 OX=3... 126 3e-27 sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX... 126 3e-27 sp|Q8V294|POLN_EEVVC Polyprotein P1234 OS=Venezuelan equine encep... 124 6e-27 sp|Q9WJC7|POLN_EEVVM Polyprotein P1234 OS=Venezuelan equine encep... 124 7e-27 sp|O40955|POLN_RUBVR Non-structural polyprotein p200 OS=Rubella v... 121 5e-26 Sequences not found previously or not previously below threshold: sp|Q9ZBG3|Y6450_STRCO Macro domain-containing protein SCO6450 OS=... 156 4e-42 sp|Q9KHE2|Y189_STRGR Macro domain-containing protein in non 5'reg... 154 2e-41 sp|Q7MTZ7|MACRO_PORGI Macro domain-containing protein PG1779 OS=P... 152 5e-41 sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=P... 149 8e-40 sp|Q8Y3S3|Y2759_LISMO Macro domain-containing protein lmo2759 OS=... 146 7e-39 sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=... 146 9e-39 sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=... 146 1e-38 sp|Q71W03|Y2748_LISMF Macro domain-containing protein LMOf2365_27... 146 1e-38 sp|Q926Y8|Y2902_LISIN Macro domain-containing protein lin2902 OS=... 146 1e-38 sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=... 145 2e-38 sp|Q44020|YGB2_CUPNE Macro domain-containing protein in gbd 3'reg... 143 9e-38 sp|Q6PAV8|MACD2_XENLA ADP-ribose glycohydrolase MACROD2 OS=Xenopu... 150 3e-37 sp|Q985D2|Y7730_RHILO Macro domain-containing protein mll7730 OS=... 139 4e-36 sp|A1Z1Q3|MACD2_HUMAN ADP-ribose glycohydrolase MACROD2 OS=Homo s... 146 5e-36 sp|Q3UYG8|MACD2_MOUSE ADP-ribose glycohydrolase MACROD2 OS=Mus mu... 147 8e-36 sp|Q8K4G6|MACD1_RAT ADP-ribose glycohydrolase MACROD1 (Fragment) ... 140 1e-35 sp|Q9RS39|Y2288_DEIRA Macro domain-containing protein DR_2288 OS=... 136 2e-35 sp|Q9BQ69|MACD1_HUMAN ADP-ribose glycohydrolase MACROD1 OS=Homo s... 141 3e-35 sp|Q922B1|MACD1_MOUSE ADP-ribose glycohydrolase MACROD1 OS=Mus mu... 141 5e-35 sp|Q2KHU5|MACD1_BOVIN ADP-ribose glycohydrolase MACROD1 OS=Bos ta... 139 1e-34 sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermopla... 133 6e-34 sp|O59182|Y1513_PYRHO Uncharacterized protein PH1513 OS=Pyrococcu... 115 1e-27 sp|Q9V0Y3|Y656_PYRAB Uncharacterized protein PYRAB06560 OS=Pyroco... 114 3e-27 sp|Q6X2U2|POLN_RUBVC Non-structural polyprotein p200 OS=Rubella v... 125 4e-27 sp|Q99IE5|POLN_RUBVV Non-structural polyprotein p200 OS=Rubella v... 124 5e-27 sp|Q99IE7|POLN_RUBVO Non-structural polyprotein p200 OS=Rubella v... 124 5e-27 sp|Q6X2U4|POLN_RUBVB Non-structural polyprotein p200 OS=Rubella v... 124 6e-27 sp|Q9J6K9|POLN_RUBVD Non-structural polyprotein p200 OS=Rubella v... 119 2e-25 sp|O28751|Y1521_ARCFU ADP-ribose glycohydrolase AF_1521 OS=Archae... 106 2e-24 sp|Q86500|POLN_RUBVM Non-structural polyprotein p200 OS=Rubella v... 111 4e-23 sp|P0DC29|ADPRH_STRPQ Protein-ADP-ribose hydrolase OS=Streptococc... 101 3e-22 sp|P0DC28|ADPRH_STRP3 Protein-ADP-ribose hydrolase OS=Streptococc... 101 3e-22 sp|Q99ZI6|ADPRH_STRP1 Protein-ADP-ribose hydrolase OS=Streptococc... 101 3e-22 sp|P0DN70|ADPRH_STRPG Protein-ADP-ribose hydrolase OS=Streptococc... 101 6e-22 sp|Q8P0X2|ADPRH_STRP8 Protein-ADP-ribose hydrolase OS=Streptococc... 101 6e-22 sp|Q5XC09|ADPRH_STRP6 Protein-ADP-ribose hydrolase OS=Streptococc... 101 6e-22 sp|Q8U0P9|Y1536_PYRFU Uncharacterized protein PF1536 OS=Pyrococcu... 97.9 1e-21 sp|Q5JER1|Y1890_THEKO Uncharacterized protein TK1890 OS=Thermococ... 97.6 1e-21 sp|Q8NYB7|ADPRH_STAAW Protein-ADP-ribose hydrolase OS=Staphylococ... 97.9 8e-21 sp|Q6GCE6|ADPRH_STAAS Protein-ADP-ribose hydrolase OS=Staphylococ... 97.9 8e-21 sp|Q5HIW9|ADPRH_STAAC Protein-ADP-ribose hydrolase OS=Staphylococ... 97.6 9e-21 sp|Q93RG0|ADPRH_TREMD Protein-ADP-ribose hydrolase OS=Treponema m... 97.6 1e-20 sp|Q4QXJ8|POLN_EEEVF Polyprotein P1234 OS=Eastern equine encephal... 104 1e-20 sp|Q6GJZ1|ADPRH_STAAR Protein-ADP-ribose hydrolase OS=Staphylococ... 97.2 1e-20 sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog OS=Nematostella vecte... 100 3e-20 sp|P67344|ADPRH_STAAN Protein-ADP-ribose hydrolase OS=Staphylococ... 95.6 4e-20 sp|P67343|ADPRH_STAAM Protein-ADP-ribose hydrolase OS=Staphylococ... 95.6 4e-20 sp|O67112|Y987_AQUAE Uncharacterized protein aq_987 OS=Aquifex ae... 92.2 6e-20 sp|P13896|POLN_WEEV Polyprotein P1234 OS=Western equine encephali... 99.9 2e-19 sp|P27283|POLN_SINDO Polyprotein P1234 OS=Sindbis virus subtype O... 98.3 6e-19 sp|Q306W6|POLN_EEEV1 Polyprotein P1234 OS=Eastern equine encephal... 98.3 7e-19 sp|P03317|POLN_SINDV Polyprotein P1234 OS=Sindbis virus OX=11034 ... 97.9 9e-19 sp|Q7TZB9|Y1934_MYCBO Uncharacterized protein Mb1934c OS=Mycobact... 93.7 1e-18 sp|P9WK29|Y1899_MYCTU Uncharacterized protein Rv1899c OS=Mycobact... 93.7 1e-18 sp|P9WK28|Y1899_MYCTO Uncharacterized protein MT1950 OS=Mycobacte... 93.7 1e-18 sp|Q86924|POLN_AURAV Polyprotein P1234 OS=Aura virus OX=44158 PE=... 96.4 2e-18 sp|Q306W8|POLN_EEEV8 Polyprotein P1234 OS=Eastern equine encephal... 95.6 4e-18 sp|O75367|H2AY_HUMAN Core histone macro-H2A.1 OS=Homo sapiens OX=... 90.6 1e-17 sp|Q02874|H2AY_RAT Core histone macro-H2A.1 OS=Rattus norvegicus ... 90.2 1e-17 sp|Q2KIX2|GDAP2_BOVIN Ganglioside-induced differentiation-associa... 91.8 2e-17 sp|O93327|H2AY_CHICK Core histone macro-H2A.1 OS=Gallus gallus OX... 90.2 2e-17 sp|Q9QZQ8|H2AY_MOUSE Core histone macro-H2A.1 OS=Mus musculus OX=... 89.9 2e-17 sp|Q8JUX6|POLN_CHIKS Polyprotein P1234 OS=Chikungunya virus (stra... 92.9 3e-17 sp|Q5XXP4|POLN_CHIK3 Polyprotein P1234 OS=Chikungunya virus (stra... 92.6 4e-17 sp|Q5XGM5|GDAP2_XENLA Ganglioside-induced differentiation-associa... 89.1 1e-16 sp|Q9DBL2|GDAP2_MOUSE Ganglioside-induced differentiation-associa... 89.1 1e-16 sp|O90370|POLN_ONNVI Polyprotein P1234 OS=O'nyong-nyong virus (st... 90.2 2e-16 sp|Q9NXN4|GDAP2_HUMAN Ganglioside-induced differentiation-associa... 87.9 2e-16 sp|P87515|POLN_BFV Polyprotein P1234 OS=Barmah forest virus OX=11... 89.5 3e-16 sp|Q5CZL1|GDAP2_XENTR Ganglioside-induced differentiation-associa... 87.5 4e-16 sp|O90368|POLN_ONNVS Polyprotein P1234 OS=O'nyong-nyong virus (st... 89.1 4e-16 sp|P13886|POLN_ONNVG Polyprotein P1234 OS=O'nyong-nyong virus (st... 89.1 4e-16 sp|Q8QZ73|POLN_MAYAB Polyprotein P1234 OS=Mayaro virus (strain Br... 88.7 6e-16 sp|Q66H63|GDAP2_RAT Ganglioside-induced differentiation-associate... 86.4 9e-16 sp|Q9YBE9|Y1648_AERPE Uncharacterized protein APE_1648.1 OS=Aerop... 80.2 1e-15 sp|P13887|POLN_RRVN Polyprotein P1234 OS=Ross river virus (strain... 86.8 2e-15 sp|P13888|POLN_RRVT Polyprotein nsP1234 (Fragment) OS=Ross river ... 85.6 4e-15 sp|Q66HX8|GDAP2_DANRE Ganglioside-induced differentiation-associa... 82.9 1e-14 sp|Q4R678|GDAP2_MACFA Ganglioside-induced differentiation-associa... 80.6 5e-14 sp|Q5Y389|POLN_GETV Polyprotein P1234 OS=Getah virus OX=59300 PE=... 81.4 1e-13 sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian hep... 81.0 1e-13 sp|Q9JGL0|POLN_SAGV Polyprotein P1234 OS=Sagiyama virus OX=59303 ... 81.0 1e-13 sp|Q8QL53|POLN_SLDV Polyprotein P1234 OS=Sleeping disease virus O... 80.2 2e-13 sp|Q8JJX1|POLN_SPDV Polyprotein P1234 OS=Salmon pancreas disease ... 80.2 2e-13 sp|Q460N3|PAR15_HUMAN Protein mono-ADP-ribosyltransferase PARP15 ... 74.8 6e-12 sp|Q8CCK0|H2AW_MOUSE Core histone macro-H2A.2 OS=Mus musculus OX=... 69.4 9e-11 sp|Q9P0M6|H2AW_HUMAN Core histone macro-H2A.2 OS=Homo sapiens OX=... 69.4 1e-10 sp|Q7JUR6|GDAP2_DROME Protein GDAP2 homolog OS=Drosophila melanog... 69.8 2e-10 sp|Q9YLR1|POLN_HEVUS Non-structural polyprotein pORF1 OS=Hepatiti... 69.8 2e-10 sp|Q292F9|GDAP2_DROPS Protein GDAP2 homolog OS=Drosophila pseudoo... 67.9 6e-10 sp|A0A0D2UG83|H2AY_CAPO3 Histone macroH2A1.1 OS=Capsaspora owczar... 65.2 2e-09 sp|Q81862|POLN_HEVCH Non-structural polyprotein pORF1 OS=Hepatiti... 66.0 4e-09 sp|P33424|POLN_HEVPA Non-structural polyprotein pORF1 OS=Hepatiti... 66.0 4e-09 sp|P29324|POLN_HEVBU Non-structural polyprotein pORF1 OS=Hepatiti... 66.0 4e-09 sp|Q9WC28|POLN_HEVHY Non-structural polyprotein pORF1 OS=Hepatiti... 63.7 2e-08 sp|Q6J8G2|POLN_HEVMG Non-structural polyprotein pORF1 OS=Hepatiti... 63.7 2e-08 sp|Q04610|POLN_HEVMY Non-structural polyprotein pORF1 OS=Hepatiti... 62.5 5e-08 sp|Q9IVZ9|POLN_HEVCT Non-structural polyprotein pORF1 OS=Hepatiti... 62.1 6e-08 sp|Q03495|POLN_HEVME Non-structural polyprotein pORF1 OS=Hepatiti... 62.1 7e-08 sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis... 61.0 1e-07 sp|P08411|POLN_SFV Polyprotein P1234 OS=Semliki forest virus OX=1... 54.0 2e-05 sp|Q54PT1|GDAP2_DICDI Protein GDAP2 homolog OS=Dictyostelium disc... 53.3 2e-05 sp|P26627|R1AB_CVMJD Replicase polyprotein 1ab (Fragment) OS=Muri... 52.9 2e-05 sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir... 52.1 8e-05 sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus... 51.7 8e-05 sp|Q5A1V3|POA1_CANAL ADP-ribose 1''-phosphate phosphatase OS=Cand... 40.9 0.032 sp|Q9Z1Q1|NEST_MESAU Nestin (Fragments) OS=Mesocricetus auratus O... 41.7 0.086 sp|Q8IRB5|CLSPN_DROME Claspin OS=Drosophila melanogaster OX=7227 ... 40.9 0.16 sp|F1QGD2|ZDH24_DANRE Probable palmitoyltransferase ZDHHC24 OS=Da... 40.2 0.17 sp|Q67ES1|TR113_RAT Taste receptor type 2 member 113 OS=Rattus no... 39.8 0.24 sp|P46565|SRG8_CAEEL Serpentine receptor class gamma-8 OS=Caenorh... 39.4 0.29 sp|Q03F26|TIG_PEDPA Trigger factor OS=Pediococcus pentosaceus (st... 39.8 0.29 sp|Q864G6|MSHR_ALOSE Melanocyte-stimulating hormone receptor OS=A... 39.4 0.31 sp|P29402|CALX1_ARATH Calnexin homolog 1 OS=Arabidopsis thaliana ... 39.8 0.33 sp|Q03QN6|TIG_LEVBA Trigger factor OS=Levilactobacillus brevis (s... 39.4 0.36 sp|Q12019|MDN1_YEAST Midasin OS=Saccharomyces cerevisiae (strain ... 39.4 0.47 sp|Q9V4C8|HCF_DROME Host cell factor OS=Drosophila melanogaster O... 39.4 0.49 sp|Q33568|CYB_TRYBO Cytochrome b OS=Trypanoplasma borreli OX=5710... 38.2 0.68 sp|A5E287|POA1_LODEL ADP-ribose 1''-phosphate phosphatase OS=Lodd... 36.7 0.78 sp|A5N5W0|PANB_CLOK5 3-methyl-2-oxobutanoate hydroxymethyltransfe... 37.9 0.81 sp|Q58990|Y1595_METJA UPF0104 membrane protein MJ1595 OS=Methanoc... 37.9 0.88 sp|Q5AS82|GMT1_EMENI GDP-mannose transporter 1 OS=Emericella nidu... 37.5 1.4 sp|Q6CRE9|FYV8_KLULA Protein FYV8 OS=Kluyveromyces lactis (strain... 37.5 1.6 sp|Q8Y4A9|PRMC_LISMO Release factor glutamine methyltransferase O... 36.7 1.8 sp|Q9Y2T5|GPR52_HUMAN G-protein coupled receptor 52 OS=Homo sapie... 36.7 2.4 sp|A0A452G813|CSCL1_CAPHI CSC1-like protein 1 OS=Capra hircus OX=... 37.1 2.5 sp|Q6YQV9|EFG_ONYPE Elongation factor G OS=Onion yellows phytopla... 36.7 2.9 sp|Q97KC9|SYE_CLOAB Glutamate--tRNA ligase OS=Clostridium acetobu... 35.9 4.0 sp|P51937|NU1M_DROSU NADH-ubiquinone oxidoreductase chain 1 OS=Dr... 35.5 4.1 sp|P07710|NU1M_DROYA NADH-ubiquinone oxidoreductase chain 1 OS=Dr... 35.5 5.2 sp|B2V5H4|SYE_CLOBA Glutamate--tRNA ligase OS=Clostridium botulin... 35.5 6.2 sp|P18929|NU1M_DROME NADH-ubiquinone oxidoreductase chain 1 OS=Dr... 34.8 7.8 sp|A1EGX6|FSCB_MOUSE Fibrous sheath CABYR-binding protein OS=Mus ... 35.2 8.4 sp|Q39994|CALX_HELTU Calnexin homolog OS=Helianthus tuberosus OX=... 35.2 8.7 sp|P84294|NU1M_DROPE NADH-ubiquinone oxidoreductase chain 1 OS=Dr... 34.8 8.9 sp|Q6Q487|CALX_ASPFU Calnexin homolog OS=Aspergillus fumigatus (s... 34.8 8.9 >sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 2604 bits (6749), Expect = 0.0, Method: Composition-based stats. Identities = 1945/1945 (100%), Positives = 1945/1945 (100%), Gaps = 0/1945 (0%) Query 1 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA 60 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA Sbjct 819 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA 878 Query 61 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 120 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE Sbjct 879 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 938 Query 121 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 180 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ Sbjct 939 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 998 Query 181 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 240 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV Sbjct 999 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 1058 Query 241 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 300 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV Sbjct 1059 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 1118 Query 301 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF 360 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF Sbjct 1119 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF 1178 Query 361 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE 420 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE Sbjct 1179 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE 1238 Query 421 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA 480 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA Sbjct 1239 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA 1298 Query 481 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS 540 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS Sbjct 1299 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS 1358 Query 541 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY 600 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY Sbjct 1359 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY 1418 Query 601 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS 660 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS Sbjct 1419 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS 1478 Query 661 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT 720 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT Sbjct 1479 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT 1538 Query 721 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY 780 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY Sbjct 1539 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY 1598 Query 781 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY 840 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY Sbjct 1599 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY 1658 Query 841 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC 900 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC Sbjct 1659 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC 1718 Query 901 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ 960 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ Sbjct 1719 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ 1778 Query 961 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH 1020 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH Sbjct 1779 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH 1838 Query 1021 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN 1080 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN Sbjct 1839 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN 1898 Query 1081 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT 1140 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT Sbjct 1899 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT 1958 Query 1141 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP 1200 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP Sbjct 1959 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP 2018 Query 1201 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK 1260 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK Sbjct 2019 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK 2078 Query 1261 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI 1320 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI Sbjct 2079 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI 2138 Query 1321 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI 1380 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI Sbjct 2139 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI 2198 Query 1381 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG 1440 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG Sbjct 2199 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG 2258 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL 1500 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL Sbjct 2259 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL 2318 Query 1501 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 1560 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS Sbjct 2319 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 2378 Query 1561 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 1620 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA Sbjct 2379 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 2438 Query 1621 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 1680 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN Sbjct 2439 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 2498 Query 1681 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS 1740 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS Sbjct 2499 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS 2558 Query 1741 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA 1800 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA Sbjct 2559 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA 2618 Query 1801 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN 1860 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN Sbjct 2619 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN 2678 Query 1861 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL 1920 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL Sbjct 2679 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL 2738 Query 1921 PFKLTCATTRQVVNVVTTKIALKGG 1945 PFKLTCATTRQVVNVVTTKIALKGG Sbjct 2739 PFKLTCATTRQVVNVVTTKIALKGG 2763 >sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1 Length=4405 Score = 2603 bits (6747), Expect = 0.0, Method: Composition-based stats. Identities = 1945/1945 (100%), Positives = 1945/1945 (100%), Gaps = 0/1945 (0%) Query 1 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA 60 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA Sbjct 819 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA 878 Query 61 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 120 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE Sbjct 879 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 938 Query 121 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 180 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ Sbjct 939 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 998 Query 181 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 240 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV Sbjct 999 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 1058 Query 241 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 300 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV Sbjct 1059 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 1118 Query 301 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF 360 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF Sbjct 1119 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF 1178 Query 361 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE 420 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE Sbjct 1179 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE 1238 Query 421 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA 480 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA Sbjct 1239 VTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTA 1298 Query 481 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS 540 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS Sbjct 1299 VVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPS 1358 Query 541 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY 600 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY Sbjct 1359 IISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY 1418 Query 601 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS 660 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS Sbjct 1419 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS 1478 Query 661 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT 720 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT Sbjct 1479 SPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT 1538 Query 721 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY 780 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY Sbjct 1539 SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTY 1598 Query 781 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY 840 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY Sbjct 1599 LDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKY 1658 Query 841 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC 900 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC Sbjct 1659 PQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYC 1718 Query 901 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ 960 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ Sbjct 1719 NKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQ 1778 Query 961 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH 1020 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH Sbjct 1779 FKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKH 1838 Query 1021 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN 1080 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN Sbjct 1839 ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDN 1898 Query 1081 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT 1140 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT Sbjct 1899 YYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVT 1958 Query 1141 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP 1200 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP Sbjct 1959 FFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKP 2018 Query 1201 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK 1260 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK Sbjct 2019 VETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILK 2078 Query 1261 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI 1320 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI Sbjct 2079 PANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI 2138 Query 1321 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI 1380 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI Sbjct 2139 ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTI 2198 Query 1381 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG 1440 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG Sbjct 2199 AKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLG 2258 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL 1500 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL Sbjct 2259 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDL 2318 Query 1501 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 1560 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS Sbjct 2319 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 2378 Query 1561 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 1620 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA Sbjct 2379 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 2438 Query 1621 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 1680 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN Sbjct 2439 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 2498 Query 1681 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS 1740 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS Sbjct 2499 GSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSAS 2558 Query 1741 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA 1800 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA Sbjct 2559 VYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEA 2618 Query 1801 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN 1860 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN Sbjct 2619 ELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN 2678 Query 1861 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL 1920 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL Sbjct 2679 KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL 2738 Query 1921 PFKLTCATTRQVVNVVTTKIALKGG 1945 PFKLTCATTRQVVNVVTTKIALKGG Sbjct 2739 PFKLTCATTRQVVNVVTTKIALKGG 2763 >sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=1a PE=1 SV=1 Length=4382 Score = 2518 bits (6527), Expect = 0.0, Method: Composition-based stats. Identities = 1472/1948 (76%), Positives = 1671/1948 (86%), Gaps = 29/1948 (1%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD++GE +S MYCSFYPPDE+EE+ Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 938 Query 120 EEEFEPSTQ-YEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSED 178 EEE T +EYGTEDDYQG PLEFGA++ ++ EEE+EEDWLDD ++Q+ Sbjct 939 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSE-------- 990 Query 179 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTV 238 VN F+GYLKLTDNV IK DIV+EA+ P V Sbjct 991 ----------------IEPEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMV 1034 Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNAAN++LKHGGGVAGALNKATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK CLH Sbjct 1035 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLH 1094 Query 299 VVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLA 358 VVGPN+N GEDIQLLK+AYENFN ++LLAPLLSAGIFGA P+ SL+VCV TVRT VY+A Sbjct 1095 VVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIA 1154 Query 359 VFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACV 418 V DK LY+++V +L+ + K E P + TE K V++ KIKAC+ Sbjct 1155 VNDKALYEQVVMDYLDNLKPRVEAPKQEEPPN--TEDSKTEEKSVVQKPVDVKPKIKACI 1212 Query 419 EEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVL 478 +EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPY+VGDV+ G + Sbjct 1213 DEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDI 1272 Query 479 TAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYIL 538 T VVIP+KKAGGTTEML++AL+KVP D YITTYPGQG GYT+EEAKT LKKCKSAFY+L Sbjct 1273 TCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVL 1332 Query 539 PSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVV 598 PS N K+EILGTVSWNLREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIKIQEG+V Sbjct 1333 PSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIV 1392 Query 599 DYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVS 658 DYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK PA VS Sbjct 1393 DYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVS 1452 Query 659 VSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVY 718 VSSPDAVT YNGYLTSSSKT EEHF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY Sbjct 1453 VSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVY 1512 Query 719 YT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFG 777 +T +P FHLDGEV++ D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQFG Sbjct 1513 HTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFG 1572 Query 778 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKK 837 PTYLDGADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKK Sbjct 1573 PTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKK 1632 Query 838 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 897 WK+PQV GLTSIKWADNNCYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALIL Sbjct 1633 WKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALIL 1692 Query 898 AYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 AY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTLS Sbjct 1693 AYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLS 1752 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGH 1017 Y+ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCGH Sbjct 1753 YDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGH 1812 Query 1018 YKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPK 1077 Y HIT+KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+PK Sbjct 1813 YTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPK 1872 Query 1078 LDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASREL 1137 LD YYKKDN+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+ KPASREL Sbjct 1873 LDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASREL 1932 Query 1138 KVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWS 1197 VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLWS Sbjct 1933 SVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWS 1992 Query 1198 TKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDI 1257 TKPV+TSNSF+VL ED QGMDNLACE +P SEEVVENPTIQK+V+EC+VKTTEVVG++ Sbjct 1993 TKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNV 2052 Query 1258 ILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 1317 ILKP++ +K+T+E+GH DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVPW Sbjct 2053 ILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPW 2112 Query 1318 DTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMP 1377 I Y KPFL + TT+N R RV NYMPY FTLL QLCTFT+STNSRI+AS+P Sbjct 2113 SKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLP 2172 Query 1378 TTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMS 1437 TTIAKN+VKSV K CL+A NY+KSP FSKL I +W LLLS+CLGSLI TAA GVL+S Sbjct 2173 TTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLS 2232 Query 1438 NLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFK 1497 N G PSYC G RE YLNS+NVT +C GS PCS+CLSGLDSLD+YP+LETIQ+TISS+K Sbjct 2233 NFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK 2292 Query 1498 WDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMA 1557 DLT GL AEW LAY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMA Sbjct 2293 LDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMA 2352 Query 1558 PISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 1617 P+SAMVRMYIFFASFYY+WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFY Sbjct 2353 PVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFY 2412 Query 1618 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 1677 VYANGG+GFCK HNWNC+NCDTFC GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV Sbjct 2413 VYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVA 2472 Query 1678 VKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAK 1737 VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES++K Sbjct 2473 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASK 2532 Query 1738 SASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVAT 1797 SASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVAT Sbjct 2533 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2592 Query 1798 AEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYML 1857 A +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+ML Sbjct 2593 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFML 2652 Query 1858 TYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKK 1917 TYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRSAAKK Sbjct 2653 TYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKK 2712 Query 1918 NNLPFKLTCATTRQVVNVVTTKIALKGG 1945 NN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2713 NNIPFRLTCATTRQVVNVITTKISLKGG 2740 >sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 2515 bits (6518), Expect = 0.0, Method: Composition-based stats. Identities = 1472/1948 (76%), Positives = 1671/1948 (86%), Gaps = 29/1948 (1%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD++GE +S MYCSFYPPDE+EE+ Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 938 Query 120 EEEFEPSTQ-YEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSED 178 EEE T +EYGTEDDYQG PLEFGA++ ++ EEE+EEDWLDD ++Q+ Sbjct 939 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSE-------- 990 Query 179 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTV 238 VN F+GYLKLTDNV IK DIV+EA+ P V Sbjct 991 ----------------IEPEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMV 1034 Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNAAN++LKHGGGVAGALNKATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK CLH Sbjct 1035 IVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLH 1094 Query 299 VVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLA 358 VVGPN+N GEDIQLLK+AYENFN ++LLAPLLSAGIFGA P+ SL+VCV TVRT VY+A Sbjct 1095 VVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIA 1154 Query 359 VFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACV 418 V DK LY+++V +L+ + K E P + TE K V++ KIKAC+ Sbjct 1155 VNDKALYEQVVMDYLDNLKPRVEAPKQEEPPN--TEDSKTEEKSVVQKPVDVKPKIKACI 1212 Query 419 EEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVL 478 +EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPY+VGDV+ G + Sbjct 1213 DEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDI 1272 Query 479 TAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYIL 538 T VVIP+KKAGGTTEML++AL+KVP D YITTYPGQG GYT+EEAKT LKKCKSAFY+L Sbjct 1273 TCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVL 1332 Query 539 PSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVV 598 PS N K+EILGTVSWNLREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIKIQEG+V Sbjct 1333 PSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIV 1392 Query 599 DYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVS 658 DYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK PA VS Sbjct 1393 DYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVS 1452 Query 659 VSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVY 718 VSSPDAVT YNGYLTSSSKT EEHF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY Sbjct 1453 VSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVY 1512 Query 719 YT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFG 777 +T +P FHLDGEV++ D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQFG Sbjct 1513 HTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFG 1572 Query 778 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKK 837 PTYLDGADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKK Sbjct 1573 PTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKK 1632 Query 838 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 897 WK+PQV GLTSIKWADNNCYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALIL Sbjct 1633 WKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALIL 1692 Query 898 AYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 AY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTLS Sbjct 1693 AYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLS 1752 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGH 1017 Y+ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCGH Sbjct 1753 YDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGH 1812 Query 1018 YKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPK 1077 Y HIT+KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+PK Sbjct 1813 YTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPK 1872 Query 1078 LDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASREL 1137 LD YYKKDN+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+ KPASREL Sbjct 1873 LDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASREL 1932 Query 1138 KVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWS 1197 VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLWS Sbjct 1933 SVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWS 1992 Query 1198 TKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDI 1257 TKPV+TSNSF+VL ED QGMDNLACE +P SEEVVENPTIQK+V+EC+VKTTEVVG++ Sbjct 1993 TKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNV 2052 Query 1258 ILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 1317 ILKP++ +K+T+E+GH DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVPW Sbjct 2053 ILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPW 2112 Query 1318 DTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMP 1377 I Y KPFL + TT+N R RV NYMPY FTLL QLCTFT+STNSRI+AS+P Sbjct 2113 SKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLP 2172 Query 1378 TTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMS 1437 TTIAKN+VKSV K CL+A NY+KSP FSKL I +W LLLS+CLGSLI TAA GVL+S Sbjct 2173 TTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLS 2232 Query 1438 NLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFK 1497 N G PSYC G RE YLNS+NVT +C GS PCS+CLSGLDSLD+YP+LETIQ+TISS+K Sbjct 2233 NFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYK 2292 Query 1498 WDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMA 1557 DLT GL AEW LAY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMA Sbjct 2293 LDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMA 2352 Query 1558 PISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 1617 P+SAMVRMYIFFASFYY+WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFY Sbjct 2353 PVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFY 2412 Query 1618 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 1677 VYANGG+GFCK HNWNC+NCDTFC GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV Sbjct 2413 VYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVA 2472 Query 1678 VKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAK 1737 VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES++K Sbjct 2473 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASK 2532 Query 1738 SASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVAT 1797 SASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVAT Sbjct 2533 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2592 Query 1798 AEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYML 1857 A +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+ML Sbjct 2593 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFML 2652 Query 1858 TYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKK 1917 TYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRSAAKK Sbjct 2653 TYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKK 2712 Query 1918 NNLPFKLTCATTRQVVNVVTTKIALKGG 1945 NN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2713 NNIPFRLTCATTRQVVNVITTKISLKGG 2740 >sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus Rp3/2004 OX=349344 GN=1a PE=3 SV=1 Length=4380 Score = 2501 bits (6481), Expect = 0.0, Method: Composition-based stats. Identities = 1459/1949 (75%), Positives = 1670/1949 (86%), Gaps = 33/1949 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 APTK VTFG+DTV+EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APTKGVTFGEDTVVEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD+SGE KL+S MYCSFYPPDE+E+ + E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 120 EEEFEP--STQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSE 177 EEE + ++EYGTE+DY+G PLEFGA++ +Q EE++EEDWLDD Sbjct 939 EEEEVSERTCEHEYGTEEDYKGLPLEFGASTDIIQVEEQEEEDWLDDAV----------- 987 Query 178 DNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPT 237 + VN +GYLKLTDNV IK DIVEEA+ P Sbjct 988 ----------------EAEPEPEPLHEEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPM 1031 Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V+VNAAN++LKHGGGVAGALNKATN AMQ ESD YI NGPL VGGSC+LSGHNLAK CL Sbjct 1032 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCL 1091 Query 298 HVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYL 357 HVVGPN+N GEDIQLLK+AYENFN ++LLAPLLSAGIFGA P+ SL++CV TVRT VY+ Sbjct 1092 HVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYI 1151 Query 358 AVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKAC 417 V DK LY+++V +L+ K K +PK E + K V++ KIKAC Sbjct 1152 VVNDKVLYEQVVMDYLDSLKPKVEAPKQEVLPKAEYPK--VDEKSVVQKTIDVKPKIKAC 1209 Query 418 VEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGV 477 ++EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPY+VGDV+ G Sbjct 1210 IDEVTTTLEETKFLTNKLLLFTDINGKLYQDSKNMLRGEDMSFLEKDAPYMVGDVITSGD 1269 Query 478 LTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYI 537 +T VVIP+KKAGGTTEML++AL+KVP + YITTYPGQG GYT+EEAKT LKKCKSAFY+ Sbjct 1270 ITCVVIPSKKAGGTTEMLSRALKKVPINEYITTYPGQGCAGYTLEEAKTALKKCKSAFYV 1329 Query 538 LPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGV 597 LPS N K+EILGTVSWNLREMLAHAEETRKLMPVC++ +AI++TIQRKYKGIKIQEG+ Sbjct 1330 LPSETPNAKEEILGTVSWNLREMLAHAEETRKLMPVCMDVRAIMATIQRKYKGIKIQEGI 1389 Query 598 VDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATV 657 VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK PA V Sbjct 1390 VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAIV 1449 Query 658 SVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSV 717 SVSSPDAVT YNGYLTSSSKT E+HF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRG+K V Sbjct 1450 SVSSPDAVTTYNGYLTSSSKTSEDHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGEKIV 1509 Query 718 YYT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQF 776 Y+T +P FHLDGEV+ D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQ Sbjct 1510 YHTLESPVKFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQL 1569 Query 777 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK 836 GPTYL+GADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTK Sbjct 1570 GPTYLEGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTK 1629 Query 837 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 896 KWK+PQV GLTSIKWADNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AANFCALI Sbjct 1630 KWKFPQVGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALI 1689 Query 897 LAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 LAY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTL Sbjct 1690 LAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTL 1749 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 SY+ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCG Sbjct 1750 SYDNLKMGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCG 1809 Query 1017 HYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDP 1076 HY HIT+KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+P Sbjct 1810 HYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEP 1869 Query 1077 KLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRE 1136 KLD YYKKDN+Y+TEQPIDL+P QP PNASFDNFK C N KFADDLNQ+TG+ KPASRE Sbjct 1870 KLDGYYKKDNAYYTEQPIDLIPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRE 1929 Query 1137 LKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLW 1196 L VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLW Sbjct 1930 LSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLW 1989 Query 1197 STKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGD 1256 STKPV+TSNSF+VL ED QGMDNLACE +P EEVVENPTIQK+V+EC+VKTTEVVG+ Sbjct 1990 STKPVDTSNSFEVLAVEDTQGMDNLACESQQPTPEEVVENPTIQKEVIECDVKTTEVVGN 2049 Query 1257 IILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVP 1316 +ILKP++ +K+T+E+ H DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVP Sbjct 2050 VILKPSDEGVKVTQELDHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVP 2109 Query 1317 WDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASM 1376 W I Y KPFL + TT+N R + R+ NYMPY TLL QLCTFT+STNSRI+AS+ Sbjct 2110 WGKILAYVKPFLGQAAVTTSNCAKRLVQRMFNNYMPYVLTLLFQLCTFTKSTNSRIRASL 2169 Query 1377 PTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLM 1436 PTTIAKN+V+ + + CL+A NY+KSP FSKL I +W LLLS+CLGSLIY TAALGVL+ Sbjct 2170 PTTIAKNSVRGIVRLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAALGVLL 2229 Query 1437 SNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSF 1496 SN G PSYC+G RE YLNS+NVT +C GS PCSVCLSGLDSLD+YP+LETIQ+TISS+ Sbjct 2230 SNFGAPSYCSGVRESYLNSSNVTTMDFCEGSFPCSVCLSGLDSLDSYPALETIQVTISSY 2289 Query 1497 KWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQM 1556 K DLT GL AEWF AY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQM Sbjct 2290 KLDLTILGLAAEWFFAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQM 2349 Query 1557 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 1616 AP+SAMVRMYIFFASFYY+WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSF Sbjct 2350 APVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSF 2409 Query 1617 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1676 YVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+VDSV Sbjct 2410 YVYANGGRGFCKTHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSV 2469 Query 1677 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 1736 VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES+A Sbjct 2470 AVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAA 2529 Query 1737 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 1796 KSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVA Sbjct 2530 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 2589 Query 1797 TAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYM 1856 TA +ELAK V+LD VLSTF+SA+RQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+M Sbjct 2590 TAHSELAKGVALDGVLSTFVSASRQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFM 2649 Query 1857 LTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAK 1916 LTYNKVENMTPRDLGACIDC+ARHINAQVA+SHN++LIWNVKD+MSLSEQLRKQIRSAAK Sbjct 2650 LTYNKVENMTPRDLGACIDCNARHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAK 2709 Query 1917 KNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 KNN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2710 KNNIPFRLTCATTRQVVNVITTKISLKGG 2738 >sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus HKU3 OX=442736 GN=1a PE=3 SV=1 Length=4376 Score = 2499 bits (6476), Expect = 0.0, Method: Composition-based stats. Identities = 1462/1948 (75%), Positives = 1665/1948 (85%), Gaps = 35/1948 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV+EVQGYK+V ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLTP+GIDLDEWS+AT+YLFD++GE KL+S MYCSFYPPDE EE E Sbjct 879 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDE--EEDCEE 936 Query 120 EEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEE-DWLDDDSQQTVGQQDGSED 178 E+ E + ++EYGTEDDY+G PLEFGA++ EEE+EE DWLDD + Sbjct 937 CEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAE--------- 987 Query 179 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTV 238 + VN F GYLKLTDNV IK DIV+EA+ KPTV Sbjct 988 ------------------PEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTV 1029 Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNAAN +LKHGGGVAGALNKATN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLH Sbjct 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 1089 Query 299 VVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLA 358 VVGPN+N GED+QLLK AYENFN +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLA Sbjct 1090 VVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLA 1149 Query 359 VFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACV 418 V DK+LYD++V +L+ K E PK E + +P E+ KIKAC+ Sbjct 1150 VNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAV---QPVAEKPVDVKPKIKACI 1206 Query 419 EEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVL 478 +EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPYIVGDV+ G + Sbjct 1207 DEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDI 1266 Query 479 TAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYIL 538 T V+IP KK+GGTTEMLA+AL++VP YITTYPGQG GYT+EEAKT LKKCKSAFY+L Sbjct 1267 TCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVL 1326 Query 539 PSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVV 598 PS NEK+E+LGTVSWNLREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QEG+V Sbjct 1327 PSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIV 1386 Query 599 DYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVS 658 DYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VS Sbjct 1387 DYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVS 1446 Query 659 VSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVY 718 VSSPDAVTAYNGYLTSSSKTPEE+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY Sbjct 1447 VSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVY 1506 Query 719 YT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFG 777 +T +P FHLDGEV+ D LK+LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQQFG Sbjct 1507 HTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFG 1566 Query 778 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKK 837 PTYLDGADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKK Sbjct 1567 PTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKK 1626 Query 838 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 897 WK+PQV GLTSIKWADNNCYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALIL Sbjct 1627 WKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALIL 1686 Query 898 AYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 AY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMGTLS Sbjct 1687 AYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLS 1746 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGH 1017 Y++ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQCGH Sbjct 1747 YDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGH 1806 Query 1018 YKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPK 1077 Y HIT+KETLY +DGA LTK SEYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI+PK Sbjct 1807 YTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPK 1866 Query 1078 LDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASREL 1137 LD YYKK N+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL Sbjct 1867 LDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASREL 1926 Query 1138 KVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWS 1197 VTFFPDLNGDVVAIDY+HY+ SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RCLWS Sbjct 1927 TVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWS 1986 Query 1198 TKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDI 1257 TKPV+TSNSF+VL ED QGMDNLACE SEEVVENPT+QK+++EC+VKTTEVVG++ Sbjct 1987 TKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNV 2046 Query 1258 ILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 1317 ILKP+ +K+T+E+GH DLMAAYV+ +S+TIKKPNELS LGLKTLATHG AA+NSVPW Sbjct 2047 ILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPW 2106 Query 1318 DTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMP 1377 I Y KPFL + T+N + +C+ RV +NYMPY TLL QLCTFT+STNSRIKAS+P Sbjct 2107 SKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLP 2166 Query 1378 TTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMS 1437 TTIAKN+VKSV K CL+ NY+KSP FSKL I++W LLLS+CLGSL Y TA LGV +S Sbjct 2167 TTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLS 2226 Query 1438 NLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFK 1497 +LG+PSYC G RE Y+NS+NVT +C G PCSVCLSGLDSLD+YP+LETIQ+TISS+K Sbjct 2227 SLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK 2286 Query 1498 WDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMA 1557 DLT GL AEW LAY+LFT+FFY+LGL+AIMQ FF YFA HFISNSWLMW II++VQMA Sbjct 2287 LDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMA 2346 Query 1558 PISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 1617 P+SAMVRMYIFFASFYYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNGV+RSFY Sbjct 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 Query 1618 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 1677 VYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSVT Sbjct 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 Query 1678 VKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAK 1737 VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES+AK Sbjct 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 Query 1738 SASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVAT 1797 SASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVAT Sbjct 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 Query 1798 AEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYML 1857 A +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN+ML Sbjct 2587 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFML 2646 Query 1858 TYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKK 1917 TYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSAAKK Sbjct 2647 TYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKK 2706 Query 1918 NNLPFKLTCATTRQVVNVVTTKIALKGG 1945 NN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2707 NNIPFRLTCATTRQVVNVITTKISLKGG 2734 >sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 2497 bits (6472), Expect = 0.0, Method: Composition-based stats. Identities = 1462/1948 (75%), Positives = 1665/1948 (85%), Gaps = 35/1948 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV+EVQGYK+V ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLTP+GIDLDEWS+AT+YLFD++GE KL+S MYCSFYPPDE EE E Sbjct 879 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDE--EEDCEE 936 Query 120 EEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEE-DWLDDDSQQTVGQQDGSED 178 E+ E + ++EYGTEDDY+G PLEFGA++ EEE+EE DWLDD + Sbjct 937 CEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAE--------- 987 Query 179 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTV 238 + VN F GYLKLTDNV IK DIV+EA+ KPTV Sbjct 988 ------------------PEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTV 1029 Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNAAN +LKHGGGVAGALNKATN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLH Sbjct 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 1089 Query 299 VVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLA 358 VVGPN+N GED+QLLK AYENFN +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLA Sbjct 1090 VVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLA 1149 Query 359 VFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACV 418 V DK+LYD++V +L+ K E PK E + +P E+ KIKAC+ Sbjct 1150 VNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAV---QPVAEKPVDVKPKIKACI 1206 Query 419 EEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVL 478 +EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPYIVGDV+ G + Sbjct 1207 DEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDI 1266 Query 479 TAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYIL 538 T V+IP KK+GGTTEMLA+AL++VP YITTYPGQG GYT+EEAKT LKKCKSAFY+L Sbjct 1267 TCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVL 1326 Query 539 PSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVV 598 PS NEK+E+LGTVSWNLREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QEG+V Sbjct 1327 PSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIV 1386 Query 599 DYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVS 658 DYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VS Sbjct 1387 DYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVS 1446 Query 659 VSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVY 718 VSSPDAVTAYNGYLTSSSKTPEE+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY Sbjct 1447 VSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVY 1506 Query 719 YT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFG 777 +T +P FHLDGEV+ D LK+LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQQFG Sbjct 1507 HTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFG 1566 Query 778 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKK 837 PTYLDGADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKK Sbjct 1567 PTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKK 1626 Query 838 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 897 WK+PQV GLTSIKWADNNCYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALIL Sbjct 1627 WKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALIL 1686 Query 898 AYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 957 AY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMGTLS Sbjct 1687 AYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLS 1746 Query 958 YEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGH 1017 Y++ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQCGH Sbjct 1747 YDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGH 1806 Query 1018 YKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPK 1077 Y HIT+KETLY +DGA LTK SEYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI+PK Sbjct 1807 YTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPK 1866 Query 1078 LDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASREL 1137 LD YYKK N+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL Sbjct 1867 LDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASREL 1926 Query 1138 KVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWS 1197 VTFFPDLNGDVVAIDY+HY+ SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RCLWS Sbjct 1927 TVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWS 1986 Query 1198 TKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDI 1257 TKPV+TSNSF+VL ED QGMDNLACE SEEVVENPT+QK+++EC+VKTTEVVG++ Sbjct 1987 TKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNV 2046 Query 1258 ILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 1317 ILKP+ +K+T+E+GH DLMAAYV+ +S+TIKKPNELS LGLKTLATHG AA+NSVPW Sbjct 2047 ILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPW 2106 Query 1318 DTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMP 1377 I Y KPFL + T+N + +C+ RV +NYMPY TLL QLCTFT+STNSRIKAS+P Sbjct 2107 SKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLP 2166 Query 1378 TTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMS 1437 TTIAKN+VKSV K CL+ NY+KSP FSKL I++W LLLS+CLGSL Y TA LGV +S Sbjct 2167 TTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLS 2226 Query 1438 NLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFK 1497 +LG+PSYC G RE Y+NS+NVT +C G PCSVCLSGLDSLD+YP+LETIQ+TISS+K Sbjct 2227 SLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK 2286 Query 1498 WDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMA 1557 DLT GL AEW LAY+LFT+FFY+LGL+AIMQ FF YFA HFISNSWLMW II++VQMA Sbjct 2287 LDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMA 2346 Query 1558 PISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 1617 P+SAMVRMYIFFASFYYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNGV+RSFY Sbjct 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 Query 1618 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 1677 VYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSVT Sbjct 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 Query 1678 VKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAK 1737 VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES+AK Sbjct 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 Query 1738 SASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVAT 1797 SASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVAT Sbjct 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 Query 1798 AEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYML 1857 A +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN+ML Sbjct 2587 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFML 2646 Query 1858 TYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKK 1917 TYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSAAKK Sbjct 2647 TYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKK 2706 Query 1918 NNLPFKLTCATTRQVVNVVTTKIALKGG 1945 NN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2707 NNIPFRLTCATTRQVVNVITTKISLKGG 2734 >sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 2497 bits (6471), Expect = 0.0, Method: Composition-based stats. Identities = 1459/1949 (75%), Positives = 1670/1949 (86%), Gaps = 33/1949 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 APTK VTFG+DTV+EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APTKGVTFGEDTVVEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD+SGE KL+S MYCSFYPPDE+E+ + E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 120 EEEFEP--STQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSE 177 EEE + ++EYGTE+DY+G PLEFGA++ +Q EE++EEDWLDD Sbjct 939 EEEEVSERTCEHEYGTEEDYKGLPLEFGASTDIIQVEEQEEEDWLDDAV----------- 987 Query 178 DNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPT 237 + VN +GYLKLTDNV IK DIVEEA+ P Sbjct 988 ----------------EAEPEPEPLHEEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPM 1031 Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V+VNAAN++LKHGGGVAGALNKATN AMQ ESD YI NGPL VGGSC+LSGHNLAK CL Sbjct 1032 VIVNAANIHLKHGGGVAGALNKATNGAMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCL 1091 Query 298 HVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYL 357 HVVGPN+N GEDIQLLK+AYENFN ++LLAPLLSAGIFGA P+ SL++CV TVRT VY+ Sbjct 1092 HVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYI 1151 Query 358 AVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKAC 417 V DK LY+++V +L+ K K +PK E + K V++ KIKAC Sbjct 1152 VVNDKVLYEQVVMDYLDSLKPKVEAPKQEVLPKAEYPK--VDEKSVVQKTIDVKPKIKAC 1209 Query 418 VEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGV 477 ++EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPY+VGDV+ G Sbjct 1210 IDEVTTTLEETKFLTNKLLLFTDINGKLYQDSKNMLRGEDMSFLEKDAPYMVGDVITSGD 1269 Query 478 LTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYI 537 +T VVIP+KKAGGTTEML++AL+KVP + YITTYPGQG GYT+EEAKT LKKCKSAFY+ Sbjct 1270 ITCVVIPSKKAGGTTEMLSRALKKVPINEYITTYPGQGCAGYTLEEAKTALKKCKSAFYV 1329 Query 538 LPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGV 597 LPS N K+EILGTVSWNLREMLAHAEETRKLMPVC++ +AI++TIQRKYKGIKIQEG+ Sbjct 1330 LPSETPNAKEEILGTVSWNLREMLAHAEETRKLMPVCMDVRAIMATIQRKYKGIKIQEGI 1389 Query 598 VDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATV 657 VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK PA V Sbjct 1390 VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAIV 1449 Query 658 SVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSV 717 SVSSPDAVT YNGYLTSSSKT E+HF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRG+K V Sbjct 1450 SVSSPDAVTTYNGYLTSSSKTSEDHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGEKIV 1509 Query 718 YYT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQF 776 Y+T +P FHLDGEV+ D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQ Sbjct 1510 YHTLESPVKFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQL 1569 Query 777 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK 836 GPTYL+GADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTK Sbjct 1570 GPTYLEGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTK 1629 Query 837 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 896 KWK+PQV GLTSIKWADNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AANFCALI Sbjct 1630 KWKFPQVGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALI 1689 Query 897 LAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 LAY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTL Sbjct 1690 LAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTL 1749 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 SY+ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCG Sbjct 1750 SYDNLKMGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCG 1809 Query 1017 HYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDP 1076 HY HIT+KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+P Sbjct 1810 HYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEP 1869 Query 1077 KLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRE 1136 KLD YYKKDN+Y+TEQPIDL+P QP PNASFDNFK C N KFADDLNQ+TG+ KPASRE Sbjct 1870 KLDGYYKKDNAYYTEQPIDLIPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRE 1929 Query 1137 LKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLW 1196 L VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLW Sbjct 1930 LSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLW 1989 Query 1197 STKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGD 1256 STKPV+TSNSF+VL ED QGMDNLACE +P EEVVENPTIQK+V+EC+VKTTEVVG+ Sbjct 1990 STKPVDTSNSFEVLAVEDTQGMDNLACESQQPTPEEVVENPTIQKEVIECDVKTTEVVGN 2049 Query 1257 IILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVP 1316 +ILKP++ +K+T+E+ H DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVP Sbjct 2050 VILKPSDEGVKVTQELDHEDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVP 2109 Query 1317 WDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASM 1376 W I Y KPFL + TT+N R + R+ NYMPY TLL QLCTFT+STNSRI+AS+ Sbjct 2110 WGKILAYVKPFLGQAAVTTSNCAKRLVQRMFNNYMPYVLTLLFQLCTFTKSTNSRIRASL 2169 Query 1377 PTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLM 1436 PTTIAKN+V+ + + CL+A NY+KSP FSKL I +W LLLS+CLGSLIY TAALGVL+ Sbjct 2170 PTTIAKNSVRGIVRLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAALGVLL 2229 Query 1437 SNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSF 1496 SN G PSYC+G RE YLNS+NVT +C GS PCSVCLSGLDSLD+YP+LETIQ+TISS+ Sbjct 2230 SNFGAPSYCSGVRESYLNSSNVTTMDFCEGSFPCSVCLSGLDSLDSYPALETIQVTISSY 2289 Query 1497 KWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQM 1556 K DLT GL AEWF AY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQM Sbjct 2290 KLDLTILGLAAEWFFAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQM 2349 Query 1557 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 1616 AP+SAMVRMYIFFASFYY+WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSF Sbjct 2350 APVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSF 2409 Query 1617 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1676 YVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+VDSV Sbjct 2410 YVYANGGRGFCKTHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSV 2469 Query 1677 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 1736 VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES+A Sbjct 2470 AVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAA 2529 Query 1737 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 1796 KSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVA Sbjct 2530 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 2589 Query 1797 TAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYM 1856 TA +ELAK V+LD VLSTF+SA+RQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+M Sbjct 2590 TAHSELAKGVALDGVLSTFVSASRQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFM 2649 Query 1857 LTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAK 1916 LTYNKVENMTPRDLGACIDC+ARHINAQVA+SHN++LIWNVKD+MSLSEQLRKQIRSAAK Sbjct 2650 LTYNKVENMTPRDLGACIDCNARHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAK 2709 Query 1917 KNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 KNN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2710 KNNIPFRLTCATTRQVVNVITTKISLKGG 2738 >sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 279/2005 OX=389167 GN=1a PE=3 SV=1 Length=4388 Score = 2489 bits (6451), Expect = 0.0, Method: Composition-based stats. Identities = 1456/1955 (74%), Positives = 1660/1955 (85%), Gaps = 37/1955 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV+EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ + E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 120 EEEFEPSTQ--YEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSE 177 +EE P +EYGTEDDY+G PLEFGA++ QQ +++ Sbjct 939 DEEEIPEETCEHEYGTEDDYKGLPLEFGASTE----------------IQQVDEEEEEDW 982 Query 178 DNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPT 237 + + + VN F+GYLKLTDNV IK DIV+EA+ KPT Sbjct 983 LEEAIAAK-----------PEPEPLPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPT 1031 Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V+VNAANV+LKHGGGVAGALNKATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK C+ Sbjct 1032 VIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCM 1091 Query 298 HVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYL 357 HVVGPN+N GED+QLLK+AY NFN +VLLAPLLSAGIFGA P+ SL++CV+TVRT VY Sbjct 1092 HVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYF 1151 Query 358 AVFDKNLYDKLVSSFLEMKSEK--QVEQKIAEIPKEEVKPFITESKPSVEQ----RKQDD 411 AV D++LYD +V +L+ K Q+ E+ ++ +T+ +E+ K D Sbjct 1152 AVNDQDLYDHVVLGYLDSLKPKVETPTQENLELKEQPAVETLTQENLELEELPVIEKPVD 1211 Query 412 KKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGD 471 K KA +EEV T+LEETKFLT LLL+ DING L+ DS ++ D+ FL+KDAPYIVGD Sbjct 1212 VKFKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGD 1271 Query 472 VVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKC 531 V+ G +T V+IP KKAGGTTEMLAKAL+KVP YITTYPGQG GYT+EEAKT L+KC Sbjct 1272 VISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKC 1331 Query 532 KSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGI 591 KS FY+LPS N+K+EILGTVSWNLREMLAHAEETRKLM +C++ KA++STI R+YKGI Sbjct 1332 KSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGI 1391 Query 592 KIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSL 651 K+QEG+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSL Sbjct 1392 KVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSL 1451 Query 652 KVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLK 711 K PA VSVSSPDAVT YNGYLTSSSKT EEHFIET+SLAG Y+DWSYSGQ T+LG+EFLK Sbjct 1452 KAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLK 1511 Query 712 RGDKSVYYT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 RGDK VY+T +P FHLDGEV+ D LK+LLSLREVRTIKVFTTVDN NLHTQ+VDMSM Sbjct 1512 RGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSM 1571 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 TYGQQFGPTYLDGADVTKIKPH HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMS Sbjct 1572 TYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMS 1631 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 ALNHTKKWK+PQ+ GLTSIKWADNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AA Sbjct 1632 ALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAA 1691 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 NFCALILAY N+TVGELGDVRETM++L QHANL+S KRVLNVVCKTCGQ+ TTL GVEAV Sbjct 1692 NFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAV 1751 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 MYMGTLSYE+ K GV IPC CG+ AT+YLVQQES FVMMSAPP++Y L+ G F CA+EYT Sbjct 1752 MYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYT 1811 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVV 1070 G+YQCGHY H+T KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV+ Sbjct 1812 GSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVI 1871 Query 1071 CTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYK 1130 TEI PKLD YYKKDN+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+K Sbjct 1872 YTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFK 1931 Query 1131 KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTW 1190 KPASREL VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPI+WH+N TNK TYKPNTW Sbjct 1932 KPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTW 1991 Query 1191 CIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKT 1250 C+RCLWSTKPVETSNSF+VL+ ED QGMDNLACE P SEEVVENPTIQK+V+EC+VKT Sbjct 1992 CLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKT 2051 Query 1251 TEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLA 1310 EVVG++ILKP+ +K+T+E+GH DLMAAYV+ +S+TIKKPNELS LGL+TLATHG A Sbjct 2052 IEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAA 2111 Query 1311 AVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNS 1370 A+NSVPW I Y KPFL + TTTN + RC+ RV NYMPY TLL QLCTFTRSTNS Sbjct 2112 AINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNS 2171 Query 1371 RIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTA 1430 RI+AS+PTTIAKN+VKSV K CL+ NY+KSP FSKL I +W LLLS+CLGSLIY TA Sbjct 2172 RIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTA 2231 Query 1431 ALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQ 1490 A GVL+SNLG+PSYC G RE Y+NS+NVT +C GS CSVCL+GLDSLD+YP+LETIQ Sbjct 2232 AFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQ 2291 Query 1491 ITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLI 1550 +TISS+K DLT+ GL AEWFLAY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW I Sbjct 2292 VTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFI 2351 Query 1551 INLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVN 1610 I++VQMAP+SAMVRMYIFFA YYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVN Sbjct 2352 ISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVN 2411 Query 1611 GVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSS 1670 G++RSFYVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSS Sbjct 2412 GMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSS 2471 Query 1671 YIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSK 1730 Y+VDSV VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSK Sbjct 2472 YVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSK 2531 Query 1731 CEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEK 1790 C+ES+AKSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEK Sbjct 2532 CDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEK 2591 Query 1791 LKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGD 1850 LK LVATA +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGD Sbjct 2592 LKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGD 2651 Query 1851 SCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQ 1910 SCNN+MLTYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQ Sbjct 2652 SCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQ 2711 Query 1911 IRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 IRSAAKKNN+PF+LTCATTRQVVN +TTKI+LKGG Sbjct 2712 IRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGG 2746 >sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 2485 bits (6441), Expect = 0.0, Method: Composition-based stats. Identities = 1457/1955 (75%), Positives = 1661/1955 (85%), Gaps = 37/1955 (2%) Query 1 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 AP K VTFG+DTV+EVQGYK+V ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 60 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 119 AV+KTLQPVS+LLT +GIDLDEWS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ + E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 120 EEEFEPSTQ--YEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSE 177 +EE P +EYGTEDDY+G PLEFGA++ QQ +++ Sbjct 939 DEEEIPEETCEHEYGTEDDYKGLPLEFGASTE----------------IQQVDEEEEEDW 982 Query 178 DNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPT 237 + + E + VN F+GYLKLTDNV IK DIV+EA+ KPT Sbjct 983 LEEAIAAKPEPE-----------PLPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPT 1031 Query 238 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 297 V+VNAANV+LKHGGGVAGALNKATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK C+ Sbjct 1032 VIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCM 1091 Query 298 HVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYL 357 HVVGPN+N GED+QLLK+AY NFN +VLLAPLLSAGIFGA P+ SL++CV+TVRT VY Sbjct 1092 HVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYF 1151 Query 358 AVFDKNLYDKLVSSFLEMKSEK--QVEQKIAEIPKEEVKPFITESKPSVEQ----RKQDD 411 AV D++LYD +V +L+ K Q+ E+ ++ +T+ +E+ K D Sbjct 1152 AVNDQDLYDHVVLGYLDSLKPKVETPTQENLELKEQPAVETLTQENLELEELPVIEKPVD 1211 Query 412 KKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGD 471 K KA +EEV T+LEETKFLT LLL+ DING L+ DS ++ D+ FL+KDAPYIVGD Sbjct 1212 VKFKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGD 1271 Query 472 VVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKC 531 V+ G +T V+IP KKAGGTTEMLAKAL+KVP YITTYPGQG GYT+EEAKT L+KC Sbjct 1272 VISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKC 1331 Query 532 KSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGI 591 KS FY+LPS N+K+EILGTVSWNLREMLAHAEETRKLM +C++ KA++STI R+YKGI Sbjct 1332 KSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGI 1391 Query 592 KIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSL 651 K+QEG+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSL Sbjct 1392 KVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSL 1451 Query 652 KVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLK 711 K PA VSVSSPDAVT YNGYLTSSSKT EEHFIET+SLAG Y+DWSYSGQ T+LG+EFLK Sbjct 1452 KAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLK 1511 Query 712 RGDKSVYYT-SNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 RGDK VY+T +P FHLDGEV+ D LK+LLSLREVRTIKVFTTVDN NLHTQ+VDMSM Sbjct 1512 RGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSM 1571 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 TYGQQFGPTYLDGADVTKIKPH HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMS Sbjct 1572 TYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMS 1631 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 ALNHTKKWK+PQ+ GLTSIKWADNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AA Sbjct 1632 ALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAA 1691 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 NFCALILAY N+TVGELGDVRETM++L QHANL+S KRVLNVVCKTCGQ+ TTL GVEAV Sbjct 1692 NFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAV 1751 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 MYMGTLSYE+ K GV IPC CG+ AT+YLVQQES FVMMSAPP++Y L+ G F CA+EYT Sbjct 1752 MYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYT 1811 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVV 1070 G+YQCGHY H+T KETLY IDGA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV+ Sbjct 1812 GSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVI 1871 Query 1071 CTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYK 1130 TEI PKLD YYKKDN+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+K Sbjct 1872 YTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFK 1931 Query 1131 KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTW 1190 KPASREL VTFFPDLNGDVVAIDY+HY+ SFKKGAKLLHKPI+WH+N TNK TYKPNTW Sbjct 1932 KPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTW 1991 Query 1191 CIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKT 1250 C+RCLWSTKPVETSNSF+VL+ ED QGMDNLACE P SEEVVENPTIQK+V+EC+VKT Sbjct 1992 CLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKT 2051 Query 1251 TEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLA 1310 EVVG++ILKP+ +K+T+E+GH DLMAAYV+ +S+TIKKPNELS LGL+TLATHG A Sbjct 2052 IEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAA 2111 Query 1311 AVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNS 1370 A+NSVPW I Y KPFL + TTTN + RC+ RV NYMPY TLL QLCTFTRSTNS Sbjct 2112 AINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNS 2171 Query 1371 RIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTA 1430 RI+AS+PTTIAKN+VKSV K CL+ NY+KSP FSKL I +W LLLS+CLGSLIY TA Sbjct 2172 RIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTA 2231 Query 1431 ALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQ 1490 A GVL+SNLG+PSYC G RE Y+NS+NVT +C GS CSVCL+GLDSLD+YP+LETIQ Sbjct 2232 AFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQ 2291 Query 1491 ITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLI 1550 +TISS+K DLT+ GL AEWFLAY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW I Sbjct 2292 VTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFI 2351 Query 1551 INLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVN 1610 I++VQMAP+SAMVRMYIFFA YYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVN Sbjct 2352 ISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVN 2411 Query 1611 GVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSS 1670 G++RSFYVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSS Sbjct 2412 GMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSS 2471 Query 1671 YIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSK 1730 Y+VDSV VKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSK Sbjct 2472 YVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSK 2531 Query 1731 CEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEK 1790 C+ES+AKSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEK Sbjct 2532 CDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEK 2591 Query 1791 LKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGD 1850 LK LVATA +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGD Sbjct 2592 LKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGD 2651 Query 1851 SCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQ 1910 SCNN+MLTYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQ Sbjct 2652 SCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQ 2711 Query 1911 IRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 IRSAAKKNN+PF+LTCATTRQVVN +TTKI+LKGG Sbjct 2712 IRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGG 2746 >sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus HKU5 OX=694008 GN=1a PE=3 SV=1 Length=4481 Score = 1716 bits (4444), Expect = 0.0, Method: Composition-based stats. Identities = 571/2049 (28%), Positives = 934/2049 (46%), Gaps = 181/2049 (9%) Query 2 PTKVTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYTVELGTEVNEFACVVADA 60 P V FG + E+ +SV++ +++ +D +L + + +TVE V +F VV D Sbjct 854 PKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKDE 913 Query 61 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 120 VI+ L + G DL++++ Y+++ G+ +S M S P +E EEE D + Sbjct 914 VIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDDY 973 Query 121 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 180 E E ++ ED+ + A A+ P E+ + D L + + D +E Sbjct 974 VEDEYLSEEMLVEEDEN-----SWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQAS 1028 Query 181 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 240 T VEV +E + V EV S + + ++ Sbjct 1029 T----EEVEVPSACVLEASQVANAAEVESCEAEVSSSIPLH--------------EDA-- 1068 Query 241 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 300 NAA A + A ++ + VG + + Sbjct 1069 NAA-----------KANDCAEGMPALDSTETVSKLSVDTPVGDVTQDDATSSNATVIS-- 1115 Query 301 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN---VYL 357 + + + ++ P P +L V+ +R+ + Sbjct 1116 -------------EDVHTATHSKGLVAVP-------EVVPEKALGTSVERMRSTSEWTVV 1155 Query 358 AVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQ--RKQDDKKIK 415 K +V + ++V++ AE P + K + + ++ + + Sbjct 1156 ETSLKQETAVIVKN-DSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVARATE 1214 Query 416 ACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQ 474 C+ +L I + S LV ++ P VGD + Sbjct 1215 DCIL--------VNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLL 1266 Query 475 EGVLTA-----VVIPTKKAGGTTEMLA---KALRKVPTDNYITTYPGQGLN--------G 518 +G A VV P +A ++L KA K P ++ G+ Sbjct 1267 KGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPL--VVSPLISAGIFCVEPRVSLE 1324 Query 519 YTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETK 578 Y + T ++ + + + + L R ++ +A+ +C + Sbjct 1325 YLLSVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQS 1384 Query 579 AIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHG 638 A ++ + + + VD G ++Y Y+SK + +I N + + MP+GYVTHG Sbjct 1385 ANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPIGYVTHG 1442 Query 639 LNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSY 698 L+L +A + ++ + VP ++S D V N + + +TPE+ FI T+ G Y W Sbjct 1443 LDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGGYHCWHL 1500 Query 699 -SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLR-----EVRT 749 +G+ G+ + L D+++ Y N + FD+L+ + + + Sbjct 1501 VTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKN 1560 Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD-T 808 + V T+D +N T V++ + TY Q G + G+D++ P G+ Y+ N Sbjct 1561 VDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEA 1620 Query 809 LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI 868 + E Y T D +FL RY S L KKWKY +G+ S+K NNCY+ +L L + Sbjct 1621 EKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDML 1680 Query 869 -ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS-C 926 E+KF PALQ AY + + G++ F ALI+AY + T GE D + + A L + Sbjct 1681 KEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQA 1740 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 K V C CG Q TT G++A +Y+G S ++ + C CG + LV+ +P+ Sbjct 1741 KMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPW 1800 Query 987 VMMSAPPAQYELKHGT------FTCASEYTG-NYQCGHYKHITSKETL-YCIDGALLTKS 1038 +++S + + +T + + G GHY H+ K+ L Y D L+K+ Sbjct 1801 LLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKT 1860 Query 1039 SEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQP-IDLV 1097 S+ K +TDV+Y + Y+ V Y LDG ++DP L +Y KD YFT++P I+ Sbjct 1861 SDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYS 1920 Query 1098 PNQPYPNASFDNFKFVCDN-----IKFADDLNQLTGYK--KPASRELKVTFFPDLNGDVV 1150 P + + N V + + N L G+ KP S++L +FFPD GDV+ Sbjct 1921 PATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVI 1980 Query 1151 AIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVL 1210 +Y Y P +K GA L KPI+W N+ + A K N +R ++ PV N + VL Sbjct 1981 LTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVL 2040 Query 1211 KSEDAQGMDNLAC-EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGD-IILKPANNSLK 1267 + Q ++ A ED KP S +V E+ + +++C V D + Sbjct 2041 QDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVN 2100 Query 1268 ITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDT----IAN 1322 + + +G DL A YVD N L + K N S + + T+ L+ + + T I Sbjct 2101 VIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILL 2160 Query 1323 YAKPFLNKVVSTTTNIVT---RCLNRVCTNYMP------YFFTLLLQL----CTFTRSTN 1369 A + S T N+ T + L R+ N + F LL L TF +S N Sbjct 2161 GASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKN 2220 Query 1370 -SRIKASMPTTIAKNTVKS-VGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVC------ 1421 S +K + V + V K C A+++ L F ++ LL +C Sbjct 2221 QSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVV-KFKRIDWKSTLRLLFLICTTGLLL 2279 Query 1422 ------------LGSLIYSTAALGVLM------SNLGMPSYCTGYREGYLNSTNVTIATY 1463 L S + A G+L S LG+ S C G E Y N + + + Sbjct 2280 SSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRN-VSYDVNDF 2338 Query 1464 CTG-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV 1522 C+ S C+ CL G DSL Y + + IQ ++S+ ++ V E+ LAY+L+T F V Sbjct 2339 CSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNV 2398 Query 1523 LGLAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L L Q FFSY V++ S ++L+ V P+ +VR+Y F A +++ + Y Sbjct 2399 LLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYN 2458 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV++GC + C++CYKRNR TRVE +T+V G +R+FY+ ANGG FC HNWNCV+CDT Sbjct 2459 HVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTA 2518 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + G YER+ L Sbjct 2519 GIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPL 2578 Query 1701 SHFVNLDNLRANN----TKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQ 1756 +F NLD L+ G N +++D + +E+ A+SA VYYSQ++ +P+LL+D Sbjct 2579 CYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDS 2638 Query 1757 ALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFI 1816 +V+ VGDS E+A KM D+YVN+F S F V +KL LVATA + + V+ TF Sbjct 2639 NMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFT 2698 Query 1817 SAAR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACID 1875 AAR V+SDVET +V+ L+ +++ D+++T + NNY+ +Y K +++ DLG ID Sbjct 2699 DAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLID 2758 Query 1876 CSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNV 1935 +A +N ++ N A IWN D+M LS+ L++QIR A +K N+PF+LT + R N+ Sbjct 2759 LNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNI 2818 Query 1936 VTTKIALKG 1944 ++ K + Sbjct 2819 LSVKFSATK 2827 >sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 1716 bits (4443), Expect = 0.0, Method: Composition-based stats. Identities = 571/2049 (28%), Positives = 934/2049 (46%), Gaps = 181/2049 (9%) Query 2 PTKVTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYTVELGTEVNEFACVVADA 60 P V FG + E+ +SV++ +++ +D +L + + +TVE V +F VV D Sbjct 854 PKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKDE 913 Query 61 VIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE 120 VI+ L + G DL++++ Y+++ G+ +S M S P +E EEE D + Sbjct 914 VIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDDY 973 Query 121 EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQ 180 E E ++ ED+ + A A+ P E+ + D L + + D +E Sbjct 974 VEDEYLSEEMLVEEDEN-----SWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQAS 1028 Query 181 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 240 T VEV +E + V EV S + + ++ Sbjct 1029 T----EEVEVPSACVLEASQVANAAEVESCEAEVSSSIPLH--------------EDA-- 1068 Query 241 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 300 NAA A + A ++ + VG + + Sbjct 1069 NAA-----------KANDCAEGMPALDSTETVSKLSVDTPVGDVTQDDATSSNATVIS-- 1115 Query 301 GPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN---VYL 357 + + + ++ P P +L V+ +R+ + Sbjct 1116 -------------EDVHTATHSKGLVAVP-------EVVPEKALGTSVERMRSTSEWTVV 1155 Query 358 AVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQ--RKQDDKKIK 415 K +V + ++V++ AE P + K + + ++ + + Sbjct 1156 ETSLKQETAVIVKN-DSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAIAVARATE 1214 Query 416 ACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQ 474 C+ +L I + S LV ++ P VGD + Sbjct 1215 DCIL--------VNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLL 1266 Query 475 EGVLTA-----VVIPTKKAGGTTEMLA---KALRKVPTDNYITTYPGQGLN--------G 518 +G A VV P +A ++L KA K P ++ G+ Sbjct 1267 KGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPL--VVSPLISAGIFCVEPRVSLE 1324 Query 519 YTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETK 578 Y + T ++ + + + + L R ++ +A+ +C + Sbjct 1325 YLLSVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQS 1384 Query 579 AIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHG 638 A ++ + + + VD G ++Y Y+SK + +I N + + MP+GYVTHG Sbjct 1385 ANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPIGYVTHG 1442 Query 639 LNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSY 698 L+L +A + ++ + VP ++S D V N + + +TPE+ FI T+ G Y W Sbjct 1443 LDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGGYHCWHL 1500 Query 699 -SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLLSLR-----EVRT 749 +G+ G+ + L D+++ Y N + FD+L+ + + + Sbjct 1501 VTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKN 1560 Query 750 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD-T 808 + V T+D +N T V++ + TY Q G + G+D++ P G+ Y+ N Sbjct 1561 VDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEA 1620 Query 809 LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI 868 + E Y T D +FL RY S L KKWKY +G+ S+K NNCY+ +L L + Sbjct 1621 EKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDML 1680 Query 869 -ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS-C 926 E+KF PALQ AY + + G++ F ALI+AY + T GE D + + A L + Sbjct 1681 KEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQA 1740 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 K V C CG Q TT G++A +Y+G S ++ + C CG + LV+ +P+ Sbjct 1741 KMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPW 1800 Query 987 VMMSAPPAQYELKHGT------FTCASEYTG-NYQCGHYKHITSKETL-YCIDGALLTKS 1038 +++S + + +T + + G GHY H+ K+ L Y D L+K+ Sbjct 1801 LLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKT 1860 Query 1039 SEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQP-IDLV 1097 S+ K +TDV+Y + Y+ V Y LDG ++DP L +Y KD YFT++P I+ Sbjct 1861 SDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYS 1920 Query 1098 PNQPYPNASFDNFKFVCDN-----IKFADDLNQLTGYK--KPASRELKVTFFPDLNGDVV 1150 P + + N V + + N L G+ KP S++L +FFPD GDV+ Sbjct 1921 PATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVI 1980 Query 1151 AIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVL 1210 +Y Y P +K GA L KPI+W N+ + A K N +R ++ PV N + VL Sbjct 1981 LTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVL 2040 Query 1211 KSEDAQGMDNLAC-EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGD-IILKPANNSLK 1267 + Q ++ A ED KP S +V E+ + +++C V D + Sbjct 2041 QDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVN 2100 Query 1268 ITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDT----IAN 1322 + + +G DL A YVD N L + K N S + + T+ L+ + + T I Sbjct 2101 VIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILL 2160 Query 1323 YAKPFLNKVVSTTTNIVT---RCLNRVCTNYMP------YFFTLLLQL----CTFTRSTN 1369 A + S T N+ T + L R+ N + F LL L TF +S N Sbjct 2161 GASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKN 2220 Query 1370 -SRIKASMPTTIAKNTVKS-VGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVC------ 1421 S +K + V + V K C A+++ L F ++ LL +C Sbjct 2221 QSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVV-KFKRIDWKSTLRLLFLICTTGLLL 2279 Query 1422 ------------LGSLIYSTAALGVLM------SNLGMPSYCTGYREGYLNSTNVTIATY 1463 L S + A G+L S LG+ S C G E Y N + + + Sbjct 2280 SSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRN-VSYDVNDF 2338 Query 1464 CTG-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV 1522 C+ S C+ CL G DSL Y + + IQ ++S+ ++ V E+ LAY+L+T F V Sbjct 2339 CSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNV 2398 Query 1523 LGLAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L L Q FFSY V++ S ++L+ V P+ +VR+Y F A +++ + Y Sbjct 2399 LLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYN 2458 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV++GC + C++CYKRNR TRVE +T+V G +R+FY+ ANGG FC HNWNCV+CDT Sbjct 2459 HVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTA 2518 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + G YER+ L Sbjct 2519 GIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPL 2578 Query 1701 SHFVNLDNLRANN----TKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQ 1756 +F NLD L+ G N +++D + +E+ A+SA VYYSQ++ +P+LL+D Sbjct 2579 CYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDS 2638 Query 1757 ALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFI 1816 +V+ VGDS E+A KM D+YVN+F S F V +KL LVATA + + V+ TF Sbjct 2639 NMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFT 2698 Query 1817 SAAR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACID 1875 AAR V+SDVET +V+ L+ +++ D+++T + NNY+ +Y K +++ DLG ID Sbjct 2699 DAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLID 2758 Query 1876 CSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNV 1935 +A +N ++ N A IWN D+M LS+ L++QIR A +K N+PF+LT + R N+ Sbjct 2759 LNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNI 2818 Query 1936 VTTKIALKG 1944 ++ K + Sbjct 2819 LSVKFSATK 2827 >sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus HKU9 OX=694006 GN=1a PE=3 SV=1 Length=4248 Score = 1666 bits (4314), Expect = 0.0, Method: Composition-based stats. Identities = 604/1996 (30%), Positives = 965/1996 (48%), Gaps = 213/1996 (11%) Query 3 TKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVI 62 +KVTFGD+ V + +VN ++++ E +D +L++ + + VE GT++ + ACVV AV Sbjct 775 SKVTFGDEEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAVY 834 Query 63 KTLQP----VSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSF--YPPDEDEEEG 116 + L L P I+L+++ + +++ + E L MY S P +DE Sbjct 835 ERLSDLFSDCPAELRP--INLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDDEMVD 892 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 D E+ ++ + ++ WL D+ + Sbjct 893 DIED-----------------------------TVEQASDSDDQWLGDEGAE-------- 915 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKP 236 TI +V M GY K+ ++VYIK ADIV+EA+ Sbjct 916 -----DCDNTIQDVDVATSMTTP-----------CGYTKIAEHVYIKCADIVQEARNYSY 959 Query 237 TVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH- 295 V+VNAANV L HGGGVAGALN+ATNNAMQ ES +YI NG L+ GG +LS H LA H Sbjct 960 AVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGHVLLSSHGLASHG 1019 Query 296 CLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNV 355 LHVVGP+ G+D+ LL + Y + + +L PL+SAGIFG SL V V Sbjct 1020 ILHVVGPDKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLVKNVACTT 1079 Query 356 YLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIK 415 Y+ V+D+ LY++ +++ ++ + Q + I E + + V+Q + Sbjct 1080 YVVVYDRQLYERALATSFDVPGPQSSVQHVPAIDWAEA---VEVQESIVDQVETPSLGAV 1136 Query 416 ACVEEVTTT-LEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQ 474 V+ + L ET EN++ + PD +V DV Sbjct 1137 DTVDSNADSGLNETARSPENVVGSV-------PDD------------------VVADV-- 1169 Query 475 EGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSA 534 + V +++ + ++KV D Q TVE+ + Sbjct 1170 ---ESCV----------RDLVRQVVKKVKRDKRPPPIVPQ----QTVEQQPQEISSPGDC 1212 Query 535 FYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQ 594 +L + VS + M+ +E L+PV ++ A + ++R + Sbjct 1213 NTVL-----------VDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPK 1257 Query 595 EGVVDY-GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKV 653 EG+ G FY Y+ + + LN L L+ +P G++ +G L +A MR L V Sbjct 1258 EGLFSSNGYEFYGYSRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTV 1317 Query 654 PATVSVSSPDAVTAYNGYLT---SSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIE-- 708 P TV V S +V Y Y S T + F+ I L G+ +DW + + + Sbjct 1318 PHTVVVPSESSVPLYRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDVLQTTCTVDRKVY 1376 Query 709 --FLKRGDKSVYYTSNPTTFHLDGE-VITFDNLKTLLSLREVR------TIKVFTTVDNI 759 KRG+ + + + + + G+ V+ F + + E + IKV TTVD I Sbjct 1377 KTICKRGNTYLCF-DDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGI 1435 Query 760 NLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYH 818 N T +V + +Y Q G + DG D + P + EG Y N + V A EYY Sbjct 1436 NYSTVLVSTAQSYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYG 1495 Query 819 TTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQ 878 D + + R MS + W Y V+G + D+NCYL A+ LQ I++ F+ P + Sbjct 1496 VDDSNIIARAMSIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVC 1555 Query 879 DAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCG 938 AY + G +++A T G D +S + H + + +RV+ VC+ CG Sbjct 1556 RAYDALKGGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCG 1614 Query 939 QQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYEL 998 Q G +A + G++ + V + C CG+ A +Y+ +Q+SP+++MS P Q L Sbjct 1615 VSQMVFTGTDACTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPL 1674 Query 999 -KHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTT 1057 G + A + G GHY + + + D ++S+ K P TD+ Y S+T+ Sbjct 1675 DTSGIWKTAIVFRGPVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTS 1734 Query 1058 TIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKF-VCDN 1116 K TY LDGV T IDP Y K+ + YFT PI++V P S+D F C N Sbjct 1735 DSKVETYYLDGVKRTTIDPDFSKYVKRGDYYFTTAPIEVV-AAPKLVTSYDGFYLSSCQN 1793 Query 1117 IKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHV 1176 + A+ N+ K +L +T +P++ GDVVAI + + G+ + KP+++ Sbjct 1794 PQLAESFNKAINATKTGPMKL-LTMYPNVAGDVVAISDDNVV-AHPYGSLHMGKPVLF-- 1849 Query 1177 NNATNKATYKPNTW-CIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVE 1235 +PNTW + L ST V T N++DVL D PV+ E E Sbjct 1850 -------VTRPNTWKKLVPLLSTVVVNTPNTYDVLAV------------DPLPVNNETSE 1890 Query 1236 NP-TIQKDVLECNVKTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVDN-SSLTIKKP 1292 P +++ + +K T V+ P N L +E TDL YV+ + K Sbjct 1891 EPISVKAPIPLYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKA 1950 Query 1293 NELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT--NIVTRCLNRV---- 1346 + LS+VLGL+ + VN + + YA L V+T+ +VTR + + Sbjct 1951 SHLSKVLGLRV--SDSSLHVNHLSKGVVYAYAATRLTTRVTTSLLGGLVTRSVRKTADFV 2008 Query 1347 --------CTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 1398 C + F+ L ++ + +K S IA NT V L N Sbjct 2009 RSTNPGSKCVGLLCLFYQLFMRFWLLVKKP-PIVKVS--GIIAYNTGCGVTTCVL----N 2061 Query 1399 YLKSP----NFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYRE--GY 1452 YL+S ++S+L+ ++ + L + L GV +S PS T ++ G Sbjct 2062 YLRSRCGNISWSRLLKLLRYMLYIWFVWTCLT----ICGVWLSEPYAPSLVTRFKYFLGI 2117 Query 1453 LNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLA 1512 + + + +C++G+DSLD YP+L Q S ++ T ++ E F A Sbjct 2118 VMPCDYVLVNETGTGWLHHLCMAGMDSLD-YPALRMQQHRYGSP-YNYTYILMLLEAFFA 2175 Query 1513 YILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASF 1572 Y+L+T ++G+ A++ L Y + + NSWL+ + ++++ P ++M+RMYI A Sbjct 2176 YLLYTPALPIVGILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFL 2234 Query 1573 YYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNW 1632 + +K ++HV GCN+ C+MCYK+N A R+EC+T+VNGV+R FYV ANGG FC HNW Sbjct 2235 WLCYKGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNW 2294 Query 1633 NCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQ 1692 NCV+CDT+ STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ Sbjct 2295 NCVSCDTYTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQ 2354 Query 1693 KTYERHSLSHFVNLDNLRANNTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPI 1751 ++YER + F N+ L + KG+ P NV+VFD ++ EE++ K+A++YY+QL C+PI Sbjct 2355 RSYERFPMDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPI 2414 Query 1752 LLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV 1811 LL+D+ +V VGD A +A MF+AY + +++ M+K+K L +TA +++ +++++V Sbjct 2415 LLVDKRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESV 2474 Query 1812 LSTFISAARQGFVD--SDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRD 1869 L F+ + R D SDV+T D+V C++L HQ E T DS NN + TY K + ++ + Sbjct 2475 LKVFVGSTRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLE 2534 Query 1870 LGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATT 1929 +G + +A+++NA +AK + LIW DF+ LSE +R+Q++ AA+K L +T ++ Sbjct 2535 VGQFMTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSL 2594 Query 1930 RQVVNVVTTKIALKGG 1945 + V + T + GG Sbjct 2595 KADVPCMVTPFKIIGG 2610 >sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 1662 bits (4304), Expect = 0.0, Method: Composition-based stats. Identities = 604/1996 (30%), Positives = 965/1996 (48%), Gaps = 213/1996 (11%) Query 3 TKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVI 62 +KVTFGD+ V + +VN ++++ E +D +L++ + + VE GT++ + ACVV AV Sbjct 775 SKVTFGDEEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAVY 834 Query 63 KTLQP----VSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSF--YPPDEDEEEG 116 + L L P I+L+++ + +++ + E L MY S P +DE Sbjct 835 ERLSDLFSDCPAELRP--INLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDDEMVD 892 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 D E+ ++ + ++ WL D+ + Sbjct 893 DIED-----------------------------TVEQASDSDDQWLGDEGAE-------- 915 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKP 236 TI +V M GY K+ ++VYIK ADIV+EA+ Sbjct 916 -----DCDNTIQDVDVATSMTTP-----------CGYTKIAEHVYIKCADIVQEARNYSY 959 Query 237 TVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH- 295 V+VNAANV L HGGGVAGALN+ATNNAMQ ES +YI NG L+ GG +LS H LA H Sbjct 960 AVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGHVLLSSHGLASHG 1019 Query 296 CLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNV 355 LHVVGP+ G+D+ LL + Y + + +L PL+SAGIFG SL V V Sbjct 1020 ILHVVGPDKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLVKNVACTT 1079 Query 356 YLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIK 415 Y+ V+D+ LY++ +++ ++ + Q + I E + + V+Q + Sbjct 1080 YVVVYDRQLYERALATSFDVPGPQSSVQHVPAIDWAEA---VEVQESIVDQVETPSLGAV 1136 Query 416 ACVEEVTTT-LEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQ 474 V+ + L ET EN++ + PD +V DV Sbjct 1137 DTVDSNADSGLNETARSPENVVGSV-------PDD------------------VVADV-- 1169 Query 475 EGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSA 534 + V +++ + ++KV D Q TVE+ + Sbjct 1170 ---ESCV----------RDLVRQVVKKVKRDKRPPPIVPQ----QTVEQQPQEISSPGDC 1212 Query 535 FYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQ 594 +L + VS + M+ +E L+PV ++ A + ++R + Sbjct 1213 NTVL-----------VDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPK 1257 Query 595 EGVVDY-GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKV 653 EG+ G FY Y+ + + LN L L+ +P G++ +G L +A MR L V Sbjct 1258 EGLFSSNGYEFYGYSRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTV 1317 Query 654 PATVSVSSPDAVTAYNGYLT---SSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIE-- 708 P TV V S +V Y Y S T + F+ I L G+ +DW + + + Sbjct 1318 PHTVVVPSESSVPLYRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDVLQTTCTVDRKVY 1376 Query 709 --FLKRGDKSVYYTSNPTTFHLDGE-VITFDNLKTLLSLREVR------TIKVFTTVDNI 759 KRG+ + + + + + G+ V+ F + + E + IKV TTVD I Sbjct 1377 KTICKRGNTYLCF-DDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGI 1435 Query 760 NLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYH 818 N T +V + +Y Q G + DG D + P + EG Y N + V A EYY Sbjct 1436 NYSTVLVSTAQSYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYG 1495 Query 819 TTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQ 878 D + + R MS + W Y V+G + D+NCYL A+ LQ I++ F+ P + Sbjct 1496 VDDSNIIARAMSIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVC 1555 Query 879 DAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCG 938 AY + G +++A T G D +S + H + + +RV+ VC+ CG Sbjct 1556 RAYDALKGGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCG 1614 Query 939 QQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYEL 998 Q G +A + G++ + V + C CG+ A +Y+ +Q+SP+++MS P Q L Sbjct 1615 VSQMVFTGTDACTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPL 1674 Query 999 -KHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTT 1057 G + A + G GHY + + + D ++S+ K P TD+ Y S+T+ Sbjct 1675 DTSGIWKTAIVFRGPVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTS 1734 Query 1058 TIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKF-VCDN 1116 K TY LDGV T IDP Y K+ + YFT PI++V P S+D F C N Sbjct 1735 DSKVETYYLDGVKRTTIDPDFSKYVKRGDYYFTTAPIEVV-AAPKLVTSYDGFYLSSCQN 1793 Query 1117 IKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHV 1176 + A+ N+ K +L +T +P++ GDVVAI + + G+ + KP+++ Sbjct 1794 PQLAESFNKAINATKTGPMKL-LTMYPNVAGDVVAISDDNVV-AHPYGSLHMGKPVLF-- 1849 Query 1177 NNATNKATYKPNTW-CIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVE 1235 +PNTW + L ST V T N++DVL D PV+ E E Sbjct 1850 -------VTRPNTWKKLVPLLSTVVVNTPNTYDVLAV------------DPLPVNNETSE 1890 Query 1236 NP-TIQKDVLECNVKTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVDN-SSLTIKKP 1292 P +++ + +K T V+ P N L +E TDL YV+ + K Sbjct 1891 EPISVKAPIPLYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKA 1950 Query 1293 NELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT--NIVTRCLNRV---- 1346 + LS+VLGL+ + VN + + YA L V+T+ +VTR + + Sbjct 1951 SHLSKVLGLRV--SDSSLHVNHLSKGVVYAYAATRLTTRVTTSLLGGLVTRSVRKTADFV 2008 Query 1347 --------CTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 1398 C + F+ L ++ + +K S IA NT V L N Sbjct 2009 RSTNPGSKCVGLLCLFYQLFMRFWLLVKKP-PIVKVS--GIIAYNTGCGVTTCVL----N 2061 Query 1399 YLKSP----NFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYRE--GY 1452 YL+S ++S+L+ ++ + L + L GV +S PS T ++ G Sbjct 2062 YLRSRCGNISWSRLLKLLRYMLYIWFVWTCLT----ICGVWLSEPYAPSLVTRFKYFLGI 2117 Query 1453 LNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLA 1512 + + + +C++G+DSLD YP+L Q S ++ T ++ E F A Sbjct 2118 VMPCDYVLVNETGTGWLHHLCMAGMDSLD-YPALRMQQHRYGSP-YNYTYILMLLEAFFA 2175 Query 1513 YILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASF 1572 Y+L+T ++G+ A++ L Y + + NSWL+ + ++++ P ++M+RMYI A Sbjct 2176 YLLYTPALPIVGILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFL 2234 Query 1573 YYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNW 1632 + +K ++HV GCN+ C+MCYK+N A R+EC+T+VNGV+R FYV ANGG FC HNW Sbjct 2235 WLCYKGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNW 2294 Query 1633 NCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQ 1692 NCV+CDT+ STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ Sbjct 2295 NCVSCDTYTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQ 2354 Query 1693 KTYERHSLSHFVNLDNLRANNTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPI 1751 ++YER + F N+ L + KG+ P NV+VFD ++ EE++ K+A++YY+QL C+PI Sbjct 2355 RSYERFPMDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPI 2414 Query 1752 LLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV 1811 LL+D+ +V VGD A +A MF+AY + +++ M+K+K L +TA +++ +++++V Sbjct 2415 LLVDKRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESV 2474 Query 1812 LSTFISAARQGFVD--SDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRD 1869 L F+ + R D SDV+T D+V C++L HQ E T DS NN + TY K + ++ + Sbjct 2475 LKVFVGSTRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLE 2534 Query 1870 LGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATT 1929 +G + +A+++NA +AK + LIW DF+ LSE +R+Q++ AA+K L +T ++ Sbjct 2535 VGQFMTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSL 2594 Query 1930 RQVVNVVTTKIALKGG 1945 + V + T + GG Sbjct 2595 KADVPCMVTPFKIIGG 2610 >sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=1a PE=1 SV=1 Length=4391 Score = 1579 bits (4089), Expect = 0.0, Method: Composition-based stats. Identities = 491/1724 (28%), Positives = 815/1724 (47%), Gaps = 138/1724 (8%) Query 338 ADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPF- 396 +V + + + ++V E ++ + +++A + + + + Sbjct 1034 VPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQTQ 1093 Query 397 -ITESKPSVEQRKQDDK----KIKACVEEVT----TTLEETKFLTENLLLYI-------- 439 +T + +++ D + K E VT ++ K E++L+ Sbjct 1094 SVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHG 1153 Query 440 -DINGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTT 492 I G ++ S V ++ P VGD V+ +G A VV P +A Sbjct 1154 GGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDV 1213 Query 493 EMLAK---ALRKVPTDNYITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSI 541 +L+K A+ P +T G+ G Y + EAKT + ++ + S+ Sbjct 1214 SLLSKCYKAMNAYPL--VVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSL 1271 Query 542 ISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYG 601 + + L LR + A++ + VC + A ++ K + VD G Sbjct 1272 TIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-G 1330 Query 602 ARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSS 661 ++Y YTSK T+ ++ N + +++MPLGYV+HGL+L +A +R + VP +++ Sbjct 1331 VQYYCYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLAN 1389 Query 662 PDAVTAYNGYLTSSSK--TPEEHFIETISLAGSYKDWSYS-GQSTQLGI---EFLKRGDK 715 + L S P E FI+ + G Y W G+ + + L D+ Sbjct 1390 KEQ----EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLNKLLHWSDQ 1445 Query 716 SVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRT-----IKVFTTVDNINLHTQVVDMSM 770 ++ Y + + F+ L + + RT I+V TVD +N T V++ Sbjct 1446 TICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKN 1505 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYM 829 TY Q G + +GAD++ P G + Y+ N +A E Y DP+FL R+ Sbjct 1506 TYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFY 1565 Query 830 SALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGE 888 S KWK + + S+K +DNNCYL ++TL + ++KF PALQ A+ + + G+ Sbjct 1566 SLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGD 1625 Query 889 AANFCALILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGV 947 + +F ALI+AY N T G D + + A L S + V C CG + L+G+ Sbjct 1626 STDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGL 1685 Query 948 EAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGT---FT 1004 +A Y+G + E + + C CG + + +V+ +P++++S P + + T F Sbjct 1686 KACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFV 1745 Query 1005 CASEYTG-NYQCGHYKHITSKETLYC-IDGALLTKSSEYKGPITDVFYKENSYTTTIKPV 1062 + + G GHY H K L D ++K+S++K +TDV + Y++ V Sbjct 1746 AFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVV 1805 Query 1063 TYKLDGVVCTEIDPKLDNYYKKDNSYFT-EQPIDLVPNQPYPNASFDNFKFVCDNIKFAD 1121 Y LDG TE+DP L +Y KD YFT E P+ P + + N V + + Sbjct 1806 RYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGG 1865 Query 1122 D-----LNQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW 1174 D N L G+ KP +++ +F P +GDV+ ++ Y P +K GA KPI+W Sbjct 1866 DAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILW 1925 Query 1175 HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVV 1234 + + K N +R ++ P+E N F L E PV V Sbjct 1926 VNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVEST------------PVEPPTV 1973 Query 1235 ENPTIQKD--VLECNVKTTEVV-GDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIK 1290 + +Q++ +++C V ++ ++ + E + DL YVD + + Sbjct 1974 DVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQVIVL 2033 Query 1291 KPNELSRVLGLKTLATHGLAAV---NSVPWDTIANYAKPFLNK----VVSTTTNIVTRCL 1343 K N LS +L L T+ + + V S+ + F K T T V C+ Sbjct 2034 KDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAVGSCI 2093 Query 1344 NRV-------------CTNYMPYFFTLLLQLCTFTRSTNSRIKASM---PTTIAKNTVKS 1387 V C +++ F L L + ++ + +K S + N VK Sbjct 2094 KSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGNVVKQ 2153 Query 1388 VGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMS---------- 1437 ++ S + L+ ++ + +++ V L S+ + VL S Sbjct 2154 CCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFEDAQGL 2213 Query 1438 ---------NLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLE 1487 LG+ S C G Y + + + T+C S C+ CL DS+ YP+L+ Sbjct 2214 KKFYKEVRAYLGISSACDGLASAYR-ANSFDVPTFCANRSAMCNWCLISQDSITHYPALK 2272 Query 1488 TIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVH--FISNSW 1545 +Q +S + ++ E LAY+L+T F L LA + FF+ ++ + S ++ Sbjct 2273 MVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWRSYNY 2332 Query 1546 LMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVEC 1605 + L P++ +VRMY A + + K Y HV++GC + C++CYKRNR TRVE Sbjct 2333 AVSSAFWLFTHIPMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKRNRLTRVEA 2392 Query 1606 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 1665 +T+V G +R+FY+ ANGG FC+ HNWNCV+CDT G+TFI +EVA DL+ +RPIN Sbjct 2393 STVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTTALRRPINA 2452 Query 1666 TDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPIN 1721 TD+S Y VDSVTVK + + + GQ YER L F NLD L+ T G N Sbjct 2453 TDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKTTTGIPEYN 2512 Query 1722 VIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFS 1781 I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ VGDS+E+A KMFD++VN+F Sbjct 2513 FIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMFDSFVNSFV 2572 Query 1782 STFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLS 1840 S +NV +KL+ L++TA + + + +VL+TFI AAR V+SDVET ++V+ ++ + Sbjct 2573 SLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNEIVDSVQYA 2632 Query 1841 HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDF 1900 H+ DI++T +S NNY+ +Y K ++++ DLG+ IDC+A +N V ++ N A IWN + Sbjct 2633 HKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGACIWNAAAY 2692 Query 1901 MSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 M LS+ L++QIR A +K NL F+LT + R N+++ + Sbjct 2693 MKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFTANK 2736 Score = 342 bits (877), Expect = 3e-93, Method: Composition-based stats. Identities = 131/419 (31%), Positives = 199/419 (47%), Gaps = 57/419 (14%) Query 3 TKVTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYTVELGTEVNEFACVVADAV 61 KV FG D V EV +SV + + + +D +L + + V+ + EFA VV + V Sbjct 857 KKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKEQV 916 Query 62 IKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE- 120 L + + DLD++ A Y F+ G+ +S M S +P + DEE + E Sbjct 917 SDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVEAS 976 Query 121 --EEFEPSTQYEYGTE----------DDY-----QGKPL-EFGATSAALQPEEEQEEDWL 162 EE E E TE D++ + PL E + ++Q E + E + Sbjct 977 DLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLDEAEDVTESVQEEAQPVEVPV 1036 Query 163 DDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEM-------------ELTPVV-----QT 204 +D +Q + +T + VEV PQ+ E+ PV QT Sbjct 1037 EDIAQVVIADT----LQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQT 1092 Query 205 IEVNSFSGYLK---------------LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKH 249 V L+ +T+ V I D ++ AK +V+VNAAN +LKH Sbjct 1093 QSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKH 1152 Query 250 GGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGED 309 GGG+AGA+N A+ A+Q ESD+YI GPL+VG S +L GH+LAK+ LHVVGP+ +D Sbjct 1153 GGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQD 1212 Query 310 IQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL 368 + LL Y+ N + +++ PL+SAGIFG P S + +T V + V +++Y L Sbjct 1213 VSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSL 1271 >sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 1579 bits (4089), Expect = 0.0, Method: Composition-based stats. Identities = 491/1724 (28%), Positives = 815/1724 (47%), Gaps = 138/1724 (8%) Query 338 ADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPF- 396 +V + + + ++V E ++ + +++A + + + + Sbjct 1034 VPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQTQ 1093 Query 397 -ITESKPSVEQRKQDDK----KIKACVEEVT----TTLEETKFLTENLLLYI-------- 439 +T + +++ D + K E VT ++ K E++L+ Sbjct 1094 SVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHG 1153 Query 440 -DINGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTT 492 I G ++ S V ++ P VGD V+ +G A VV P +A Sbjct 1154 GGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDV 1213 Query 493 EMLAK---ALRKVPTDNYITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSI 541 +L+K A+ P +T G+ G Y + EAKT + ++ + S+ Sbjct 1214 SLLSKCYKAMNAYPL--VVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSL 1271 Query 542 ISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYG 601 + + L LR + A++ + VC + A ++ K + VD G Sbjct 1272 TIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-G 1330 Query 602 ARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSS 661 ++Y YTSK T+ ++ N + +++MPLGYV+HGL+L +A +R + VP +++ Sbjct 1331 VQYYCYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLAN 1389 Query 662 PDAVTAYNGYLTSSSK--TPEEHFIETISLAGSYKDWSYS-GQSTQLGI---EFLKRGDK 715 + L S P E FI+ + G Y W G+ + + L D+ Sbjct 1390 KEQ----EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLNKLLHWSDQ 1445 Query 716 SVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRT-----IKVFTTVDNINLHTQVVDMSM 770 ++ Y + + F+ L + + RT I+V TVD +N T V++ Sbjct 1446 TICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKN 1505 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYM 829 TY Q G + +GAD++ P G + Y+ N +A E Y DP+FL R+ Sbjct 1506 TYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFY 1565 Query 830 SALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGE 888 S KWK + + S+K +DNNCYL ++TL + ++KF PALQ A+ + + G+ Sbjct 1566 SLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGD 1625 Query 889 AANFCALILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGV 947 + +F ALI+AY N T G D + + A L S + V C CG + L+G+ Sbjct 1626 STDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGL 1685 Query 948 EAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGT---FT 1004 +A Y+G + E + + C CG + + +V+ +P++++S P + + T F Sbjct 1686 KACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFV 1745 Query 1005 CASEYTG-NYQCGHYKHITSKETLYC-IDGALLTKSSEYKGPITDVFYKENSYTTTIKPV 1062 + + G GHY H K L D ++K+S++K +TDV + Y++ V Sbjct 1746 AFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVV 1805 Query 1063 TYKLDGVVCTEIDPKLDNYYKKDNSYFT-EQPIDLVPNQPYPNASFDNFKFVCDNIKFAD 1121 Y LDG TE+DP L +Y KD YFT E P+ P + + N V + + Sbjct 1806 RYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGG 1865 Query 1122 D-----LNQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW 1174 D N L G+ KP +++ +F P +GDV+ ++ Y P +K GA KPI+W Sbjct 1866 DAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILW 1925 Query 1175 HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVV 1234 + + K N +R ++ P+E N F L E PV V Sbjct 1926 VNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVEST------------PVEPPTV 1973 Query 1235 ENPTIQKD--VLECNVKTTEVV-GDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIK 1290 + +Q++ +++C V ++ ++ + E + DL YVD + + Sbjct 1974 DVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQVIVL 2033 Query 1291 KPNELSRVLGLKTLATHGLAAV---NSVPWDTIANYAKPFLNK----VVSTTTNIVTRCL 1343 K N LS +L L T+ + + V S+ + F K T T V C+ Sbjct 2034 KDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAVGSCI 2093 Query 1344 NRV-------------CTNYMPYFFTLLLQLCTFTRSTNSRIKASM---PTTIAKNTVKS 1387 V C +++ F L L + ++ + +K S + N VK Sbjct 2094 KSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGNVVKQ 2153 Query 1388 VGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMS---------- 1437 ++ S + L+ ++ + +++ V L S+ + VL S Sbjct 2154 CCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFEDAQGL 2213 Query 1438 ---------NLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLE 1487 LG+ S C G Y + + + T+C S C+ CL DS+ YP+L+ Sbjct 2214 KKFYKEVRAYLGISSACDGLASAYR-ANSFDVPTFCANRSAMCNWCLISQDSITHYPALK 2272 Query 1488 TIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVH--FISNSW 1545 +Q +S + ++ E LAY+L+T F L LA + FF+ ++ + S ++ Sbjct 2273 MVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWRSYNY 2332 Query 1546 LMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVEC 1605 + L P++ +VRMY A + + K Y HV++GC + C++CYKRNR TRVE Sbjct 2333 AVSSAFWLFTHIPMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKRNRLTRVEA 2392 Query 1606 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 1665 +T+V G +R+FY+ ANGG FC+ HNWNCV+CDT G+TFI +EVA DL+ +RPIN Sbjct 2393 STVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTTALRRPINA 2452 Query 1666 TDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPIN 1721 TD+S Y VDSVTVK + + + GQ YER L F NLD L+ T G N Sbjct 2453 TDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKTTTGIPEYN 2512 Query 1722 VIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFS 1781 I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ VGDS+E+A KMFD++VN+F Sbjct 2513 FIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMFDSFVNSFV 2572 Query 1782 STFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLS 1840 S +NV +KL+ L++TA + + + +VL+TFI AAR V+SDVET ++V+ ++ + Sbjct 2573 SLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNEIVDSVQYA 2632 Query 1841 HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDF 1900 H+ DI++T +S NNY+ +Y K ++++ DLG+ IDC+A +N V ++ N A IWN + Sbjct 2633 HKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGACIWNAAAY 2692 Query 1901 MSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 M LS+ L++QIR A +K NL F+LT + R N+++ + Sbjct 2693 MKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFTANK 2736 Score = 342 bits (877), Expect = 4e-93, Method: Composition-based stats. Identities = 131/419 (31%), Positives = 199/419 (47%), Gaps = 57/419 (14%) Query 3 TKVTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYTVELGTEVNEFACVVADAV 61 KV FG D V EV +SV + + + +D +L + + V+ + EFA VV + V Sbjct 857 KKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKEQV 916 Query 62 IKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE- 120 L + + DLD++ A Y F+ G+ +S M S +P + DEE + E Sbjct 917 SDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVEAS 976 Query 121 --EEFEPSTQYEYGTE----------DDY-----QGKPL-EFGATSAALQPEEEQEEDWL 162 EE E E TE D++ + PL E + ++Q E + E + Sbjct 977 DLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLDEAEDVTESVQEEAQPVEVPV 1036 Query 163 DDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEM-------------ELTPVV-----QT 204 +D +Q + +T + VEV PQ+ E+ PV QT Sbjct 1037 EDIAQVVIADT----LQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQT 1092 Query 205 IEVNSFSGYLK---------------LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKH 249 V L+ +T+ V I D ++ AK +V+VNAAN +LKH Sbjct 1093 QSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKH 1152 Query 250 GGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGED 309 GGG+AGA+N A+ A+Q ESD+YI GPL+VG S +L GH+LAK+ LHVVGP+ +D Sbjct 1153 GGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQD 1212 Query 310 IQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL 368 + LL Y+ N + +++ PL+SAGIFG P S + +T V + V +++Y L Sbjct 1213 VSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSL 1271 >sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus HKU4 OX=694007 GN=1a PE=1 SV=1 Length=4434 Score = 1510 bits (3909), Expect = 0.0, Method: Composition-based stats. Identities = 473/1597 (30%), Positives = 761/1597 (48%), Gaps = 106/1597 (7%) Query 441 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 494 I G ++ S V + ++ + P VGD V+ +G A VV P + + Sbjct 1198 IAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAAL 1257 Query 495 LAKALRKVPTDN-YITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIISNE 545 L + + +T G+ Y + T + I ++ + Sbjct 1258 LKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPS 1317 Query 546 KQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFY 605 K + L R + A+ +C E A V ++ K + VD G +Y Sbjct 1318 KPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYY 1376 Query 606 FYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAV 665 Y+++ + +I N + + MP GYVTHGL+L ++ Y+R +KVP ++S + + Sbjct 1377 LYSARDALTDVIAAANGCS-GICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQI 1435 Query 666 TAYNGYLTSSSKTPEEHFIETISLAGSYKDWSY-SGQSTQLGI---EFLKRGDKSVYYTS 721 N + + +TPE FI ++ G Y W SG + + L +++ Y Sbjct 1436 PIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYAD 1493 Query 722 NPTTFHLDGEVITFDNLKTLLSLREVR-----TIKVFTTVDNINLHTQVVDMSMTYGQQF 776 N + + F +L+ + R I+V T+D +N T +++ + T+ +Q Sbjct 1494 NKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQL 1553 Query 777 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD-TLRVEAFEYYHTTDPSFLGRYMSALNHT 835 G T+ G D++ P G++ +V N + +V EYY T+D +FL RY S Sbjct 1554 GATFYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLV 1613 Query 836 KKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEAANFCA 894 ++WK+ +G+ S+K ++ NCY+ ++ + + ++KF PALQ+AY R + G+ +F A Sbjct 1614 QQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLA 1673 Query 895 LILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYM 953 LI+AY + T D + + L A L S K V C CG + G+ A +Y Sbjct 1674 LIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYA 1733 Query 954 GTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHG--TFTCASEYTG 1011 G S E+ + C CG + LV+ +P++++S + + + G Sbjct 1734 GVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQG 1793 Query 1012 -NYQCGHYKHITSKETL-YCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGV 1069 GHY HI K+ L Y D LTK+S+ K +T V+Y YT V Y LDGV Sbjct 1794 VETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGV 1853 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQP-IDLVPNQPYPNASFDNFKFVCDNIKFADD-----L 1123 E++P L NYY KD Y+T +P I P P + + N V + D Sbjct 1854 TKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFF 1913 Query 1124 NQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATN 1181 N L G+ KP S++L + P+ +GDV+ ++ +Y P +KKG L KPI+W N + Sbjct 1914 NDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCD 1973 Query 1182 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 1241 A KPN +R L+ P+ N + VL+ +Q + E PV ++V P + Sbjct 1974 SALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLV-----EHNVPVVDDV---PITTR 2025 Query 1242 DVLECNVKTTE---VVGDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSR 1297 ++E K V G+ N + + + +G T+L A YVD N+ + + N S Sbjct 2026 KLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSS 2085 Query 1298 VLGLKTLATHGLAAVNSVPWDT----IANYAKPFLNKVVSTTTNIVTRCLNRVCTNY--- 1350 + L T+ + L V + T + A T T + Sbjct 2086 LFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKF 2145 Query 1351 -------------MPYFFTLLLQLCTFTRSTNSRIKAS---MPTTIAKNTVKSVGKFCLE 1394 + F L + I S + N VK G Sbjct 2146 VVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYY 2205 Query 1395 ASFNYLKSPNFSKLINI-------------IIWFLLLSVCLGSLIYSTAALGVLM----- 1436 K ++ + + I +L + L S + A G+L Sbjct 2206 MLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEV 2265 Query 1437 -SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITIS 1494 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+ Sbjct 2266 RSYLGIRTLCDGLVVEYRN-TSFDVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHIT 2324 Query 1495 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIIN 1552 S+ ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + Sbjct 2325 SYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFF 2384 Query 1553 LVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGV 1612 LV P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G Sbjct 2385 LVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGT 2444 Query 1613 RRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYI 1672 +R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y Sbjct 2445 KRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYY 2504 Query 1673 VDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPINVIVFDGK 1728 VDSV VK+ + L++++ G YER+ L +F NL+ L+ G N +++D Sbjct 2505 VDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTN 2564 Query 1729 SKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPM 1788 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V Sbjct 2565 DRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSR 2624 Query 1789 EKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEV 1847 +KL+ L+ TA + + NVL TF AAR V+SDVET VV+ L+ +H++DI++ Sbjct 2625 DKLEKLINTARDCVRRGDDFQNVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQL 2684 Query 1848 TGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQL 1907 T + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ Sbjct 2685 TTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSF 2744 Query 1908 RKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 ++QIR A +K N+PF+LT + R N+++ K + Sbjct 2745 KRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATK 2781 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 121/468 (26%), Positives = 197/468 (42%), Gaps = 103/468 (22%) Query 3 TKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNE-KCSAYTVEL--------------- 46 KVTFGD +EV Y+SV+IT+++ +D +L+ K + +TVE Sbjct 851 KKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEV 910 Query 47 --------------GTEVNEFACVVADAVIKTLQPVS-------ELLTPLGIDLDEWSMA 85 G +V +F V V + + ++ E + Sbjct 911 LTLLTPLLRGYDIDGFDVEDFIDVPC-YVYNQDGDCAWSSNMTFSINPVEDVEEVEEFIE 969 Query 86 TYYLFDE----SGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQY---------EYG 132 YL DE E A + P +D + E EE P E Sbjct 970 DDYLSDELPIADDEEAWARAV--EEVMPLDDILVAEIELEEDPPLETALESVEAEVVETA 1027 Query 133 TEDDYQGKPLEFGATSAALQPEEE----------QEEDWL-------------------- 162 + + ++ +++ + E + + +D L Sbjct 1028 EAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAVVGGPVSDVTAIVTN 1087 Query 163 -------------------DDDSQQTVGQQDGSEDNQTTTIQTIVE-VQPQLEMELTPVV 202 D+ S+ V Q + N+ +T VE VQP+ +++ Sbjct 1088 DIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSR 1147 Query 203 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 262 ++ S + + ++V + D ++ A + ++VNAAN +LKHGGG+AG +NKA+ Sbjct 1148 KSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASG 1207 Query 263 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ 322 +Q ESD+YI+ NGPL VG S +L GH LA LHVVGP+ ED LLK Y+ FN+ Sbjct 1208 GDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNK 1267 Query 323 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 370 H +++ PL+SAGIF DP S + V T Y+ V ++++Y+ L + Sbjct 1268 HTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLAT 1315 >sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 1510 bits (3909), Expect = 0.0, Method: Composition-based stats. Identities = 473/1597 (30%), Positives = 761/1597 (48%), Gaps = 106/1597 (7%) Query 441 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 494 I G ++ S V + ++ + P VGD V+ +G A VV P + + Sbjct 1198 IAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAAL 1257 Query 495 LAKALRKVPTDN-YITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIISNE 545 L + + +T G+ Y + T + I ++ + Sbjct 1258 LKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPS 1317 Query 546 KQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFY 605 K + L R + A+ +C E A V ++ K + VD G +Y Sbjct 1318 KPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYY 1376 Query 606 FYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAV 665 Y+++ + +I N + + MP GYVTHGL+L ++ Y+R +KVP ++S + + Sbjct 1377 LYSARDALTDVIAAANGCS-GICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQI 1435 Query 666 TAYNGYLTSSSKTPEEHFIETISLAGSYKDWSY-SGQSTQLGI---EFLKRGDKSVYYTS 721 N + + +TPE FI ++ G Y W SG + + L +++ Y Sbjct 1436 PIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYAD 1493 Query 722 NPTTFHLDGEVITFDNLKTLLSLREVR-----TIKVFTTVDNINLHTQVVDMSMTYGQQF 776 N + + F +L+ + R I+V T+D +N T +++ + T+ +Q Sbjct 1494 NKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQL 1553 Query 777 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD-TLRVEAFEYYHTTDPSFLGRYMSALNHT 835 G T+ G D++ P G++ +V N + +V EYY T+D +FL RY S Sbjct 1554 GATFYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLV 1613 Query 836 KKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEAANFCA 894 ++WK+ +G+ S+K ++ NCY+ ++ + + ++KF PALQ+AY R + G+ +F A Sbjct 1614 QQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLA 1673 Query 895 LILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYM 953 LI+AY + T D + + L A L S K V C CG + G+ A +Y Sbjct 1674 LIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYA 1733 Query 954 GTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHG--TFTCASEYTG 1011 G S E+ + C CG + LV+ +P++++S + + + G Sbjct 1734 GVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQG 1793 Query 1012 -NYQCGHYKHITSKETL-YCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGV 1069 GHY HI K+ L Y D LTK+S+ K +T V+Y YT V Y LDGV Sbjct 1794 VETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGV 1853 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQP-IDLVPNQPYPNASFDNFKFVCDNIKFADD-----L 1123 E++P L NYY KD Y+T +P I P P + + N V + D Sbjct 1854 TKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFF 1913 Query 1124 NQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATN 1181 N L G+ KP S++L + P+ +GDV+ ++ +Y P +KKG L KPI+W N + Sbjct 1914 NDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCD 1973 Query 1182 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 1241 A KPN +R L+ P+ N + VL+ +Q + E PV ++V P + Sbjct 1974 SALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLV-----EHNVPVVDDV---PITTR 2025 Query 1242 DVLECNVKTTE---VVGDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSR 1297 ++E K V G+ N + + + +G T+L A YVD N+ + + N S Sbjct 2026 KLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSS 2085 Query 1298 VLGLKTLATHGLAAVNSVPWDT----IANYAKPFLNKVVSTTTNIVTRCLNRVCTNY--- 1350 + L T+ + L V + T + A T T + Sbjct 2086 LFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKF 2145 Query 1351 -------------MPYFFTLLLQLCTFTRSTNSRIKAS---MPTTIAKNTVKSVGKFCLE 1394 + F L + I S + N VK G Sbjct 2146 VVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYY 2205 Query 1395 ASFNYLKSPNFSKLINI-------------IIWFLLLSVCLGSLIYSTAALGVLM----- 1436 K ++ + + I +L + L S + A G+L Sbjct 2206 MLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEV 2265 Query 1437 -SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITIS 1494 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+ Sbjct 2266 RSYLGIRTLCDGLVVEYRN-TSFDVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHIT 2324 Query 1495 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIIN 1552 S+ ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + Sbjct 2325 SYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFF 2384 Query 1553 LVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGV 1612 LV P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G Sbjct 2385 LVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGT 2444 Query 1613 RRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYI 1672 +R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y Sbjct 2445 KRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYY 2504 Query 1673 VDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPINVIVFDGK 1728 VDSV VK+ + L++++ G YER+ L +F NL+ L+ G N +++D Sbjct 2505 VDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTN 2564 Query 1729 SKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPM 1788 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V Sbjct 2565 DRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSR 2624 Query 1789 EKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEV 1847 +KL+ L+ TA + + NVL TF AAR V+SDVET VV+ L+ +H++DI++ Sbjct 2625 DKLEKLINTARDCVRRGDDFQNVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQL 2684 Query 1848 TGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQL 1907 T + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ Sbjct 2685 TTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSF 2744 Query 1908 RKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 ++QIR A +K N+PF+LT + R N+++ K + Sbjct 2745 KRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATK 2781 Score = 243 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 121/468 (26%), Positives = 197/468 (42%), Gaps = 103/468 (22%) Query 3 TKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNE-KCSAYTVEL--------------- 46 KVTFGD +EV Y+SV+IT+++ +D +L+ K + +TVE Sbjct 851 KKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEV 910 Query 47 --------------GTEVNEFACVVADAVIKTLQPVS-------ELLTPLGIDLDEWSMA 85 G +V +F V V + + ++ E + Sbjct 911 LTLLTPLLRGYDIDGFDVEDFIDVPC-YVYNQDGDCAWSSNMTFSINPVEDVEEVEEFIE 969 Query 86 TYYLFDE----SGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQY---------EYG 132 YL DE E A + P +D + E EE P E Sbjct 970 DDYLSDELPIADDEEAWARAV--EEVMPLDDILVAEIELEEDPPLETALESVEAEVVETA 1027 Query 133 TEDDYQGKPLEFGATSAALQPEEE----------QEEDWL-------------------- 162 + + ++ +++ + E + + +D L Sbjct 1028 EAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAVVGGPVSDVTAIVTN 1087 Query 163 -------------------DDDSQQTVGQQDGSEDNQTTTIQTIVE-VQPQLEMELTPVV 202 D+ S+ V Q + N+ +T VE VQP+ +++ Sbjct 1088 DIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSR 1147 Query 203 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 262 ++ S + + ++V + D ++ A + ++VNAAN +LKHGGG+AG +NKA+ Sbjct 1148 KSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASG 1207 Query 263 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ 322 +Q ESD+YI+ NGPL VG S +L GH LA LHVVGP+ ED LLK Y+ FN+ Sbjct 1208 GDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNK 1267 Query 323 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 370 H +++ PL+SAGIF DP S + V T Y+ V ++++Y+ L + Sbjct 1268 HTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLAT 1315 >sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 1494 bits (3868), Expect = 0.0, Method: Composition-based stats. Identities = 464/1597 (29%), Positives = 754/1597 (47%), Gaps = 106/1597 (7%) Query 441 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 494 I G ++ S V + ++ P VGD V+ +G A VV P + + Sbjct 1205 IAGAINKASGGDVQEESDEYISNSGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAAL 1264 Query 495 LAKALRKVPTDN-YITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIISNE 545 L + + +T G+ Y + T + I ++ + Sbjct 1265 LKRCYKTFNKHTIVVTPLISSGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPS 1324 Query 546 KQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFY 605 K + L R + A+ +C E A V ++ K + VD G +Y Sbjct 1325 KPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYY 1383 Query 606 FYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAV 665 Y+++ + +I N + MP GYVTHGL+L ++ Y+R +KVP ++S + + Sbjct 1384 LYSARDALTDVIAAANGC-PGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQI 1442 Query 666 TAYNGYLTSSSKTPEEHFIETISLAGSYKDWSY-SGQSTQLGI---EFLKRGDKSVYYTS 721 N + + +TPE FI ++ G Y W SG + + L +++ Y Sbjct 1443 PIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYAD 1500 Query 722 NPTTFHLDGEVITFDNLKTLLSLREVR-----TIKVFTTVDNINLHTQVVDMSMTYGQQF 776 N + + F +L+ + R I+V T+D +N T +++ + T+ +Q Sbjct 1501 NKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDATTFRKQL 1560 Query 777 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD-TLRVEAFEYYHTTDPSFLGRYMSALNHT 835 G T+ G D++ P G++ +V N + V EYY T+D +FL RY S Sbjct 1561 GATFYKGVDISDALPTVKMGGESLFVADNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLV 1620 Query 836 KKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEAANFCA 894 ++WK+ +G+ S+K ++ NCY+ ++ + + ++KF PALQ+AY R + G+ +F A Sbjct 1621 QQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLA 1680 Query 895 LILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYM 953 LI+AY + T D + + L A L S K V C CG + G+ A +Y Sbjct 1681 LIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYA 1740 Query 954 GTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHG--TFTCASEYTG 1011 G S E+ + C CG + LV+ +P++++S + + + G Sbjct 1741 GVNSMEELQSVFNETCVCGSVKHRQLVEHSTPWLLVSGLNEVKVSTSTDPVYRAFNVFQG 1800 Query 1012 -NYQCGHYKHITSKETL-YCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGV 1069 GHY H+ K+ L Y D LTK+S+ K +T V+Y + YT V Y LDGV Sbjct 1801 VETSVGHYVHVRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGV 1860 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQP-IDLVPNQPYPNASFDNFKFVCDNIKFADD-----L 1123 E++P L NYY KD Y+T +P I P P + + N V + D Sbjct 1861 TKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFF 1920 Query 1124 NQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATN 1181 N L G+ KP S++L + P+ +GDV+ ++ +Y P +KKG L KPI+W N + Sbjct 1921 NDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCD 1980 Query 1182 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 1241 A KPN +R L+ P+ N + VL+ +Q ++ P V + + Sbjct 1981 SALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLIE--------PNVPVVEDVSITTR 2032 Query 1242 DVLECNVKTTE---VVGDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSR 1297 ++E K V G+ N + + + +G T+L A YVD N+ + + N S Sbjct 2033 KLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSS 2092 Query 1298 VLGLKTLATHGLAAVNSVPWDT----IANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPY 1353 + L T+ + L V + T + A T T ++ + Sbjct 2093 LFKLHTVESGDLQIVANGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRSFCKF 2152 Query 1354 FFTL----------------LLQLCTFTRSTNSRIKAS---MPTTIAKNTVKSVGKFCLE 1394 + + S + N VK G Sbjct 2153 VVNYGVLQNMFLFLKMLFFLPFNYLWPKKQPTVDVGVSGLRTAGVVTTNIVKQCGTAAYY 2212 Query 1395 ASFNYLKSPNFSKLINI-------------IIWFLLLSVCLGSLIYSTAALGVLM----- 1436 K ++ + + I ++ + L S + A G+L Sbjct 2213 MLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVIFNQVLSSDVMLEDATGILAMYKEV 2272 Query 1437 -SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITIS 1494 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+ Sbjct 2273 RSYLGIRTLCDGLAVEYRN-TSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHIT 2331 Query 1495 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIIN 1552 S+ ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + Sbjct 2332 SYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFF 2391 Query 1553 LVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGV 1612 LV P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G Sbjct 2392 LVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGT 2451 Query 1613 RRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYI 1672 +R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y Sbjct 2452 KRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYY 2511 Query 1673 VDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPINVIVFDGK 1728 VDSV VK+ + L++++ G YER+ L +F NL+ L+ G N +++D Sbjct 2512 VDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTN 2571 Query 1729 SKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPM 1788 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V Sbjct 2572 DRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSR 2631 Query 1789 EKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEV 1847 +KL+ L+ TA + + VL TF AAR V+SDVET VV+ L+ +H++DI++ Sbjct 2632 DKLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQL 2691 Query 1848 TGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQL 1907 T + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ Sbjct 2692 TTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSF 2751 Query 1908 RKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 ++QIR A +K N+PF+LT + R N+++ K + Sbjct 2752 KRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATK 2788 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 125/225 (56%), Gaps = 5/225 (2%) Query 147 TSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVE-VQPQLEMELTPVVQTI 205 + Q D+ S+ V Q + T +T VE VQP+ ++ + ++ Sbjct 1102 SVEQAQQCGVSSLPIQDEASENQVHQVPDLQ----CTSETKVEIVQPRQDLRPRRLRKSK 1157 Query 206 EVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAM 265 S + + ++V + D ++ A + V+VNAAN +LKHGGG+AGA+NKA+ + Sbjct 1158 VDLSKYKHTVINNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDV 1217 Query 266 QVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEV 325 Q ESD+YI+ +GPL VG S +L G+ LA L VVGP+ ED LLK Y+ FN+H + Sbjct 1218 QEESDEYISNSGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTI 1277 Query 326 LLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 370 ++ PL+S+GIF DP S + V T Y+ V ++++Y+ L + Sbjct 1278 VVTPLISSGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLAT 1322 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 98/260 (38%), Gaps = 31/260 (12%) Query 3 TKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNE-KCSAYTVELGTEVNEFACVVADAV 61 KVTFGD +EV Y+SV+IT+++ +D +L+ K + +TVE V +F V+ D V Sbjct 851 KKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEV 910 Query 62 IKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP------------- 108 + L P+ G D++++ Y++++ G+ +S+M S P Sbjct 911 LTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEFIED 970 Query 109 -------PDEDEEEGDCEE-EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED 160 P D+EE EE P + + PLE S E E E Sbjct 971 DYLSDELPIADDEEAWTRAVEEVMPLDDILVAEIELEEDLPLETALESV----EAEVGES 1026 Query 161 WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNV 220 D+ + T + + V + ++ + P+ + E Sbjct 1027 ISDELCVVETAKAQEPSVESTDSTPSTSTVVSENDLSVKPMSRVAETGDVLEVET----- 1081 Query 221 YIKNADIVEEAKKVKPTVVV 240 + + + V +V Sbjct 1082 AVVGGPVSDVTASVVTNDIV 1101 >sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 133/2005 OX=389230 GN=1a PE=3 SV=1 Length=4441 Score = 1494 bits (3867), Expect = 0.0, Method: Composition-based stats. Identities = 464/1597 (29%), Positives = 754/1597 (47%), Gaps = 106/1597 (7%) Query 441 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 494 I G ++ S V + ++ P VGD V+ +G A VV P + + Sbjct 1205 IAGAINKASGGDVQEESDEYISNSGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAAL 1264 Query 495 LAKALRKVPTDN-YITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIISNE 545 L + + +T G+ Y + T + I ++ + Sbjct 1265 LKRCYKTFNKHTIVVTPLISSGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPS 1324 Query 546 KQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFY 605 K + L R + A+ +C E A V ++ K + VD G +Y Sbjct 1325 KPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYY 1383 Query 606 FYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAV 665 Y+++ + +I N + MP GYVTHGL+L ++ Y+R +KVP ++S + + Sbjct 1384 LYSARDALTDVIAAANGC-PGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQI 1442 Query 666 TAYNGYLTSSSKTPEEHFIETISLAGSYKDWSY-SGQSTQLGI---EFLKRGDKSVYYTS 721 N + + +TPE FI ++ G Y W SG + + L +++ Y Sbjct 1443 PIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYAD 1500 Query 722 NPTTFHLDGEVITFDNLKTLLSLREVR-----TIKVFTTVDNINLHTQVVDMSMTYGQQF 776 N + + F +L+ + R I+V T+D +N T +++ + T+ +Q Sbjct 1501 NKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDATTFRKQL 1560 Query 777 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD-TLRVEAFEYYHTTDPSFLGRYMSALNHT 835 G T+ G D++ P G++ +V N + V EYY T+D +FL RY S Sbjct 1561 GATFYKGVDISDALPTVKMGGESLFVADNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLV 1620 Query 836 KKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEAANFCA 894 ++WK+ +G+ S+K ++ NCY+ ++ + + ++KF PALQ+AY R + G+ +F A Sbjct 1621 QQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLA 1680 Query 895 LILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYM 953 LI+AY + T D + + L A L S K V C CG + G+ A +Y Sbjct 1681 LIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYA 1740 Query 954 GTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHG--TFTCASEYTG 1011 G S E+ + C CG + LV+ +P++++S + + + G Sbjct 1741 GVNSMEELQSVFNETCVCGSVKHRQLVEHSTPWLLVSGLNEVKVSTSTDPVYRAFNVFQG 1800 Query 1012 -NYQCGHYKHITSKETL-YCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGV 1069 GHY H+ K+ L Y D LTK+S+ K +T V+Y + YT V Y LDGV Sbjct 1801 VETSVGHYVHVRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGV 1860 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQP-IDLVPNQPYPNASFDNFKFVCDNIKFADD-----L 1123 E++P L NYY KD Y+T +P I P P + + N V + D Sbjct 1861 TKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFF 1920 Query 1124 NQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATN 1181 N L G+ KP S++L + P+ +GDV+ ++ +Y P +KKG L KPI+W N + Sbjct 1921 NDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCD 1980 Query 1182 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 1241 A KPN +R L+ P+ N + VL+ +Q ++ P V + + Sbjct 1981 SALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLIE--------PNVPVVEDVSITTR 2032 Query 1242 DVLECNVKTTE---VVGDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSR 1297 ++E K V G+ N + + + +G T+L A YVD N+ + + N S Sbjct 2033 KLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSS 2092 Query 1298 VLGLKTLATHGLAAVNSVPWDT----IANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPY 1353 + L T+ + L V + T + A T T ++ + Sbjct 2093 LFKLHTVESGDLQIVANGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRSFCKF 2152 Query 1354 FFTL----------------LLQLCTFTRSTNSRIKAS---MPTTIAKNTVKSVGKFCLE 1394 + + S + N VK G Sbjct 2153 VVNYGVLQNMFLFLKMLFFLPFNYLWPKKQPTVDVGVSGLRTAGVVTTNIVKQCGTAAYY 2212 Query 1395 ASFNYLKSPNFSKLINI-------------IIWFLLLSVCLGSLIYSTAALGVLM----- 1436 K ++ + + I ++ + L S + A G+L Sbjct 2213 MLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVIFNQVLSSDVMLEDATGILAMYKEV 2272 Query 1437 -SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITIS 1494 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+ Sbjct 2273 RSYLGIRTLCDGLAVEYRN-TSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHIT 2331 Query 1495 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIIN 1552 S+ ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + Sbjct 2332 SYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFF 2391 Query 1553 LVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGV 1612 LV P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G Sbjct 2392 LVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGT 2451 Query 1613 RRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYI 1672 +R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y Sbjct 2452 KRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYY 2511 Query 1673 VDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPINVIVFDGK 1728 VDSV VK+ + L++++ G YER+ L +F NL+ L+ G N +++D Sbjct 2512 VDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTN 2571 Query 1729 SKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPM 1788 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V Sbjct 2572 DRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSR 2631 Query 1789 EKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEV 1847 +KL+ L+ TA + + VL TF AAR V+SDVET VV+ L+ +H++DI++ Sbjct 2632 DKLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQL 2691 Query 1848 TGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQL 1907 T + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ Sbjct 2692 TTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSF 2751 Query 1908 RKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 ++QIR A +K N+PF+LT + R N+++ K + Sbjct 2752 KRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATK 2788 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 125/225 (56%), Gaps = 5/225 (2%) Query 147 TSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVE-VQPQLEMELTPVVQTI 205 + Q D+ S+ V Q + T +T VE VQP+ ++ + ++ Sbjct 1102 SVEQAQQCGVSSLPIQDEASENQVHQVPDLQ----CTSETKVEIVQPRQDLRPRRLRKSK 1157 Query 206 EVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAM 265 S + + ++V + D ++ A + V+VNAAN +LKHGGG+AGA+NKA+ + Sbjct 1158 VDLSKYKHTVINNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDV 1217 Query 266 QVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEV 325 Q ESD+YI+ +GPL VG S +L G+ LA L VVGP+ ED LLK Y+ FN+H + Sbjct 1218 QEESDEYISNSGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTI 1277 Query 326 LLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 370 ++ PL+S+GIF DP S + V T Y+ V ++++Y+ L + Sbjct 1278 VVTPLISSGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLAT 1322 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 98/260 (38%), Gaps = 31/260 (12%) Query 3 TKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNE-KCSAYTVELGTEVNEFACVVADAV 61 KVTFGD +EV Y+SV+IT+++ +D +L+ K + +TVE V +F V+ D V Sbjct 851 KKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEV 910 Query 62 IKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP------------- 108 + L P+ G D++++ Y++++ G+ +S+M S P Sbjct 911 LTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEFIED 970 Query 109 -------PDEDEEEGDCEE-EEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEED 160 P D+EE EE P + + PLE S E E E Sbjct 971 DYLSDELPIADDEEAWTRAVEEVMPLDDILVAEIELEEDLPLETALESV----EAEVGES 1026 Query 161 WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNV 220 D+ + T + + V + ++ + P+ + E Sbjct 1027 ISDELCVVETAKAQEPSVESTDSTPSTSTVVSENDLSVKPMSRVAETGDVLEVET----- 1081 Query 221 YIKNADIVEEAKKVKPTVVV 240 + + + V +V Sbjct 1082 AVVGGPVSDVTASVVTNDIV 1101 >sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 1304 bits (3375), Expect = 0.0, Method: Composition-based stats. Identities = 371/1328 (28%), Positives = 604/1328 (45%), Gaps = 120/1328 (9%) Query 695 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 747 DW + + G+ +K G V + +G + + ++ LL+ + Sbjct 1553 DWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIRALLANK-- 1610 Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + V TVD +N + V +G+ G + DG +VTK++ ++GK F+ + Sbjct 1611 --VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLS 1668 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 + A + D L +Y + L KW + K ++NNCY+ A L LQ Sbjct 1669 EADLVAVKDAFGFDEPQLLKYYTMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1727 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 + LKF Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1728 LSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT 1787 Query 928 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 987 L VCK CG +Q KGV+AVM+ GTL +G I CTCG + + Q PF+ Sbjct 1788 CNLEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFL 1845 Query 988 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1047 + S P +L A+ +TG GHY H+ K D + K SE KG TD Sbjct 1846 ICSNTPEGRKLPDDV-VAANIFTG-GSVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTD 1903 Query 1048 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--N 1104 Y +N T + T+ LD V C E P L YY + Y+T +PI + + + Sbjct 1904 CLYLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVD 1962 Query 1105 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1163 + NFK V +I A+ LN G+ E K+T +P GDVV Y + Sbjct 1963 GVYTNFKLVGHSI--AEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSS 2020 Query 1164 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFDV---------- 1209 G KP+VW H + TY +P+ C ++ PV+ S D Sbjct 2021 GCITFGKPVVWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLVT 2079 Query 1210 -LKSEDAQGMDNLACEDLKP--------VSEEVVENPTIQK-DVLECNV----KTTEVVG 1255 + DA +A E V EV + P++ DV E + K +V G Sbjct 2080 GVPGADASAGAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEG 2139 Query 1256 DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSV 1315 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2140 SVVVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPT------------ 2187 Query 1316 PWDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLC 1362 + Y K + K+V+ ++ R + C + +F Sbjct 2188 ----VREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWI 2243 Query 1363 TFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLI-----NIIIWF-- 1415 F N+ K T +A + + + S+ ++WF Sbjct 2244 KF----NTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNF 2299 Query 1416 LLLSVCLGSLI---------YSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIATY 1463 L +V L + + + G+ + C Y+ GY +S + Sbjct 2300 LYANVILSDFYLPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS-------F 2352 Query 1464 CTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRFF 1520 C GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T F Sbjct 2353 CNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDY-ISLFKLVVELVIGYSLYTVCF 2411 Query 1521 YVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKS 1578 Y L + MQL ++ F+ + W L + + M P ++R YI + Y V+ Sbjct 2412 YPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCL 2471 Query 1579 YVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCD 1638 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC+ Sbjct 2472 CRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCN 2531 Query 1639 TFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERH 1698 ++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y+ Sbjct 2532 SWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDDV 2591 Query 1699 SLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 1758 + S FV+++ L + KG +V+V + ++ +++ A+V+Y+Q + +P+L++++ L Sbjct 2592 NASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVEKKL 2649 Query 1759 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 1818 ++ V+ MFD YV++ + +V + L + V A L + V L+ V+ TFI Sbjct 2650 ITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGC 2709 Query 1819 ARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCS 1877 AR+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I + Sbjct 2710 ARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNN 2769 Query 1878 ARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVT 1937 A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++T Sbjct 2770 AKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILT 2829 Query 1938 TKIALKGG 1945 T +LKGG Sbjct 2830 TPFSLKGG 2837 Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 65/252 (26%), Positives = 116/252 (46%), Gaps = 18/252 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV D+++ + V V+VN AN + HG GVAGA+ + +A E+ D + Sbjct 1319 CITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVK 1378 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLLS 332 G +VG +G L K L++VGP+ + LL+ AY++ N+ + ++ L+S Sbjct 1379 AQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLIS 1438 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1439 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQLAKNLCR 1498 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 +VK F+T + S+ ++C L+E + L ++ L ++ N + Sbjct 1499 DVK-FVTNACSSLFS--------ESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1549 Query 446 HPDSATLVSDID 457 P LV+ D Sbjct 1550 LPTDWRLVNKFD 1561 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 96/233 (41%), Gaps = 23/233 (10%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V ++ + + ITF LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 AV TL P E + T + LD + YLFDE G+ +A MYCSF PD++ Sbjct 892 AVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDE---- 947 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 DC + + + + +D +A+ + QEED + ++ V Sbjct 948 DCVAADVVDADENQDDDAED------------SAVLVADTQEEDGV---AKGQVEADSEI 992 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 229 T + + + E + EV S + + AD V+ Sbjct 993 CVAHTGSQEELAEPDAVGSQTPIASAEETEVGEASDREGIAEAKATVCADAVD 1045 Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 16/149 (11%) Query 845 GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTV 904 G S NC+L + L+ +Q + L+F +Q + +AG F ++ K++ Sbjct 1110 GFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI 1169 Query 905 GEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFK 962 G V + + S K N C C + L+G++A+ + G Sbjct 1170 ILPQGGYVADFAYFFLSQ---CSFKAYANWRCLECDM-ELKLQGLDAMFFYG-------- 1217 Query 963 KGVQIPCTCGKQATKYLVQQESPFVMMSA 991 V C CG T L+ + P+ + Sbjct 1218 DVVSHMCKCGNSMT--LLSADIPYTLHFG 1244 >sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus (strain A59) OX=11142 GN=1a PE=1 SV=1 Length=4468 Score = 1303 bits (3372), Expect = 0.0, Method: Composition-based stats. Identities = 371/1328 (28%), Positives = 604/1328 (45%), Gaps = 120/1328 (9%) Query 695 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 747 DW + + G+ +K G V + +G + + ++ LL+ + Sbjct 1553 DWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIRALLANK-- 1610 Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + V TVD +N + V +G+ G + DG +VTK++ ++GK F+ + Sbjct 1611 --VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLS 1668 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 + A + D L +Y + L KW + K ++NNCY+ A L LQ Sbjct 1669 EADLVAVKDAFGFDEPQLLKYYTMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1727 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 + LKF Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1728 LSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT 1787 Query 928 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 987 L VCK CG +Q KGV+AVM+ GTL +G I CTCG + + Q PF+ Sbjct 1788 CNLEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFL 1845 Query 988 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1047 + S P +L A+ +TG GHY H+ K D + K SE KG TD Sbjct 1846 ICSNTPEGRKLPDDV-VAANIFTG-GSVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTD 1903 Query 1048 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--N 1104 Y +N T + T+ LD V C E P L YY + Y+T +PI + + + Sbjct 1904 CLYLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVD 1962 Query 1105 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1163 + NFK V +I A+ LN G+ E K+T +P GDVV Y + Sbjct 1963 GVYTNFKLVGHSI--AEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSS 2020 Query 1164 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFDV---------- 1209 G KP+VW H + TY +P+ C ++ PV+ S D Sbjct 2021 GCITFGKPVVWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLVT 2079 Query 1210 -LKSEDAQGMDNLACEDLKP--------VSEEVVENPTIQK-DVLECNV----KTTEVVG 1255 + DA +A E V EV + P++ DV E + K +V G Sbjct 2080 GVPGADASAGAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEG 2139 Query 1256 DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSV 1315 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2140 SVVVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPT------------ 2187 Query 1316 PWDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLC 1362 + Y K + K+V+ ++ R + C + +F Sbjct 2188 ----VREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWI 2243 Query 1363 TFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLI-----NIIIWF-- 1415 F N+ K T +A + + + S+ ++WF Sbjct 2244 KF----NTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNF 2299 Query 1416 LLLSVCLGSLI---------YSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIATY 1463 L +V L + + + G+ + C Y+ GY +S + Sbjct 2300 LYANVILSDFYLPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS-------F 2352 Query 1464 CTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRFF 1520 C GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T F Sbjct 2353 CNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDY-ISLFKLVVELVIGYSLYTVCF 2411 Query 1521 YVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKS 1578 Y L + MQL ++ F+ + W L + + M P ++R YI + Y V+ Sbjct 2412 YPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCL 2471 Query 1579 YVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCD 1638 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC+ Sbjct 2472 CRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCN 2531 Query 1639 TFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERH 1698 ++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y+ Sbjct 2532 SWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDDV 2591 Query 1699 SLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 1758 + S FV+++ L + KG +V+V + ++ +++ A+V+Y+Q + +P+L++++ L Sbjct 2592 NASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVEKKL 2649 Query 1759 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 1818 ++ V+ MFD YV++ + +V + L + V A L + V L+ V+ TFI Sbjct 2650 ITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGC 2709 Query 1819 ARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCS 1877 AR+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I + Sbjct 2710 ARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNN 2769 Query 1878 ARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVT 1937 A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++T Sbjct 2770 AKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILT 2829 Query 1938 TKIALKGG 1945 T +LKGG Sbjct 2830 TPFSLKGG 2837 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 65/252 (26%), Positives = 116/252 (46%), Gaps = 18/252 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV D+++ + V V+VN AN + HG GVAGA+ + +A E+ D + Sbjct 1319 CITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVK 1378 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLLS 332 G +VG +G L K L++VGP+ + LL+ AY++ N+ + ++ L+S Sbjct 1379 AQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLIS 1438 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1439 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQLAKNLCR 1498 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 +VK F+T + S+ ++C L+E + L ++ L ++ N + Sbjct 1499 DVK-FVTNACSSLFS--------ESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1549 Query 446 HPDSATLVSDID 457 P LV+ D Sbjct 1550 LPTDWRLVNKFD 1561 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 96/233 (41%), Gaps = 23/233 (10%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V ++ + + ITF LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 AV TL P E + T + LD + YLFDE G+ +A MYCSF PD++ Sbjct 892 AVESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDE---- 947 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 DC + + + + +D +A+ + QEED + ++ V Sbjct 948 DCVAADVVDADENQDDDAED------------SAVLVADTQEEDGV---AKGQVEADSEI 992 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 229 T + + + E + EV S + + AD V+ Sbjct 993 CVAHTGSQEELAEPDAVGSQTPIASAEETEVGEASDREGIAEAKATVCADAVD 1045 Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 16/149 (11%) Query 845 GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTV 904 G S NC+L + L+ +Q + L+F +Q + +AG F ++ K++ Sbjct 1110 GFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI 1169 Query 905 GEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFK 962 G V + + S K N C C + L+G++A+ + G Sbjct 1170 ILPQGGYVADFAYFFLSQ---CSFKAYANWRCLECDM-ELKLQGLDAMFFYG-------- 1217 Query 963 KGVQIPCTCGKQATKYLVQQESPFVMMSA 991 V C CG T L+ + P+ + Sbjct 1218 DVVSHMCKCGNSMT--LLSADIPYTLHFG 1244 >sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 1302 bits (3370), Expect = 0.0, Method: Composition-based stats. Identities = 365/1333 (27%), Positives = 598/1333 (45%), Gaps = 126/1333 (9%) Query 695 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 747 DW + + G+ +K G+ V + +G + + ++ LL+ + Sbjct 1552 DWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANK-- 1609 Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1610 --VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLS 1667 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 + A + D L +Y S L KW + K ++NNCY+ A L LQ Sbjct 1668 AADLAAVKDAFGFDEPQLLQYYSMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1726 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 + LKF + R+G+ F +L+LA + E D + + + A+L Sbjct 1727 LSLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGAT 1786 Query 928 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 987 L +CK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF+ Sbjct 1787 CDLEFICK-CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLV-HCTQFNVPFL 1844 Query 988 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1047 + S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1845 ICSNTPEGKKLPDDV-VAANIFTG-GSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTD 1902 Query 1048 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPN-- 1104 Y +N T + TY LD V C P L YY + Y+T +PI + + Sbjct 1903 CLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVE 1961 Query 1105 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1163 + NFK V +I A+ LN G+ E K+T +P GDVV Y + Sbjct 1962 GVYTNFKLVGHDI--AEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSG 2019 Query 1164 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD----------- 1208 G KP++W H + TY +P+ C ++ PV+ S D Sbjct 2020 GCVTFGKPVIWRGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDRRPVPSAVLVT 2078 Query 1209 ---------VLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVG---- 1255 + +E + AC V +++V + V VK ++ G Sbjct 2079 GAASGADASAISTEPGTAKEQKACAS-DSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKP 2137 Query 1256 -----DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLA 1310 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2138 VKWNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPT------- 2190 Query 1311 AVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTL 1357 + Y K ++K++ ++ R + C + +F Sbjct 2191 ---------VREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLY 2241 Query 1358 LLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLI-----NII 1412 F N+ K T +A + + + S+ + Sbjct 2242 CFSWIKF----NTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFL 2297 Query 1413 IWF--LLLSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNV 1458 +WF L +V L ++ + + + G+ + C Y+ GY +S Sbjct 2298 LWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSS--- 2354 Query 1459 TIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYIL 1515 +C GS+ C +C SG D LD Y S+ +Q + SF + ++ F LV E + Y L Sbjct 2355 ----FCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDY-ISLFKLVVELVIGYSL 2409 Query 1516 FTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAPISAMVRMYIFFASFY 1573 +T FY L + MQL ++ F+ + W L + + M P ++R YI + Y Sbjct 2410 YTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMY 2469 Query 1574 YVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWN 1633 V+ HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WN Sbjct 2470 KVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWN 2529 Query 1634 CVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQK 1693 C+NC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Sbjct 2530 CLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQR 2589 Query 1694 TYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILL 1753 Y+ S S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P+L+ Sbjct 2590 VYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLM 2647 Query 1754 LDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLS 1813 +++ L++ V+ MFD YV + +V + L + V A L + V L+ V+ Sbjct 2648 VEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQVMD 2707 Query 1814 TFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGA 1872 TF+ AR+ +DSDVETK + + + + + +EVT +SCNN + TY K + + DLG Sbjct 2708 TFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGV 2767 Query 1873 CIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQV 1932 I +A+H+ + VAK+ N+A IW+V F LS L+ ++R A K L KLT Sbjct 2768 LIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEAN 2827 Query 1933 VNVVTTKIALKGG 1945 V ++TT +LKGG Sbjct 2828 VPILTTPFSLKGG 2840 Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 68/252 (27%), Positives = 117/252 (46%), Gaps = 18/252 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA A E+ D + Sbjct 1318 CITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVK 1377 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGP--NVNKGEDIQLLKSAYENFNQHEVLLAPLLS 332 G +VGG +G L K L++VGP + E LL+ AY++ N+ + ++ L+S Sbjct 1378 AQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLIS 1437 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1438 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQLAKNLCR 1497 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 +VK F+T + S+ ++ L+E + L ++ L ++ N + Sbjct 1498 DVK-FVTNACSSLFS--------ESSFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1548 Query 446 HPDSATLVSDID 457 P LV+ D Sbjct 1549 LPTDWRLVNKFD 1560 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 91/233 (39%), Gaps = 24/233 (10%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V EV + + I F LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 AV TL P E + T + L+ YLFDE GE +AS MYCSF PDED Sbjct 892 AVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED---- 947 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 C + + + + A + + QEED + +++ V D Sbjct 948 -CVATDVVYADENQD------------DDADDPVVLVADTQEEDGV---AREQVDSADSE 991 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 229 T Q + E + EV + + AD ++ Sbjct 992 ICVAHTGGQEMTEPDVVGSQTPIASAEETEVGEACDREGIAEVKATVCADALD 1044 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 79/205 (39%), Gaps = 23/205 (11%) Query 785 DVTKIKPHNSHEGKTFYVLPNDDT-LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQV 843 D+ K++ E +T P D T V AF+ + L + + + +K Sbjct 1054 DIEKVEDSILSELQTELNAPADKTYEDVLAFDAIY---SETLSAFYAVPSDETHFKVC-- 1108 Query 844 NGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKT 903 G S NC+L + L+ +Q + L+F +Q + +AG F ++ K+ Sbjct 1109 -GFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKS 1167 Query 904 VGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQF 961 + G V + + S K N C CG + L+G++AV + G Sbjct 1168 IILPQGGYVADFAYFFLSQ---CSFKVHANWRCLKCGM-ELKLQGLDAVFFYG------- 1216 Query 962 KKGVQIPCTCGKQATKYLVQQESPF 986 V C CG T L+ + P+ Sbjct 1217 -DVVSHMCKCGNSMT--LLSADIPY 1238 >sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 1302 bits (3368), Expect = 0.0, Method: Composition-based stats. Identities = 373/1327 (28%), Positives = 602/1327 (45%), Gaps = 119/1327 (9%) Query 695 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 747 DW + + G+ +K G+ V + +G +V + ++ LL+ + Sbjct 1500 DWRLVNKFDSVDGVRTVKYFECPGEIFVSSQGKKFGYVQNGSFKVASVSQIRALLANK-- 1557 Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1558 --VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLS 1615 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 + A D L +Y + L KW + K ++NNCY+ A L LQ Sbjct 1616 AADLVAVTDAFGFDEPQLLKYYNMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1674 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 + LKF+ Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1675 LSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSGAT 1734 Query 928 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 987 VCK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF+ Sbjct 1735 CDFEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYTIACTCGNKLV-HCTQLNVPFL 1792 Query 988 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1047 + S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1793 ICSNKPEGKKLPDDV-VAANIFTG-GSLGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTD 1850 Query 1048 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPN-- 1104 Y +N T + K T+ LD V C E +P L YY + Y+T +PI + + Sbjct 1851 CLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYT-KPIIKAQFRTFEKVE 1909 Query 1105 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1163 + NFK V +I A+ N G+ E K+T +P GDVV Y + Sbjct 1910 GVYTNFKLVGHSI--AEKFNAKLGFDCNSPFTEYKITEWPTATGDVVLASDDLYVSRYSG 1967 Query 1164 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD-------VLKS 1212 G KP++W H + TY +P+ C ++ PV+ S D VL + Sbjct 1968 GCVTFGKPVIWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLVT 2026 Query 1213 EDAQGMD---NLACEDLKPVSEEVVEN---------PTIQKDVLECNV----KTTEVVGD 1256 G A E S+ VV+ DV E + K +V Sbjct 2027 GALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVEDS 2086 Query 1257 IILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVP 1316 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2087 VVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELSRLVNSPT------------- 2133 Query 1317 WDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLCT 1363 + Y K + K+V ++ R + C + + +FF Sbjct 2134 ---VREYVKWGMTKIVIPAKLVLLRDEKQEFVAPKVVKAKVIACYSAVKWFFLYCFSWIK 2190 Query 1364 FTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLI-----NIIIWF--L 1416 F N+ K T +A ++ + + S+ ++WF L Sbjct 2191 F----NTDNKVIYTTEVASKLTFNLCCLAFKNALQTFNWNVVSRGFFLVATVFLLWFNFL 2246 Query 1417 LLSVCLGSLI---------YSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIATYC 1464 +V L + + + + G+ + C Y+ GY +S +C Sbjct 2247 YANVILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFTLCDLYQVSDVGYRSS-------FC 2299 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRFFY 1521 GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T FY Sbjct 2300 NGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDY-ISLFKLVVELVIGYSLYTVCFY 2358 Query 1522 VLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 1579 L MQL ++ F+ + W + + M P ++R YI + Y ++ Sbjct 2359 PLFGLIGMQLLTTWLPEFFMLETMHWSARFFVFVANMLPAFTLLRFYIVVTAMYKIFCLC 2418 Query 1580 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 1639 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC Sbjct 2419 RHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTGFCAKHQWNCLNCSA 2478 Query 1640 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 1699 F G+TFI+ E A DLS + KRP+NPTD + Y+V V S+ L++++ GQ+ Y+ S Sbjct 2479 FGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYDDVS 2538 Query 1700 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV 1759 S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P+LL+++ L+ Sbjct 2539 ASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLLVEKKLI 2596 Query 1760 SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAA 1819 + V+ MFD YV++ +V + L + V A L + V L+ V+ TFI A Sbjct 2597 TTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCA 2656 Query 1820 RQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSA 1878 R+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I +A Sbjct 2657 RRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNA 2716 Query 1879 RHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTT 1938 +H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++TT Sbjct 2717 KHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTT 2776 Query 1939 KIALKGG 1945 +LKGG Sbjct 2777 PFSLKGG 2783 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 115/252 (46%), Gaps = 18/252 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA + E+ D + Sbjct 1266 CITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVK 1325 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLLS 332 G +VG +G NL K L++VGP+ + L+ AY++ N+ + ++ L+S Sbjct 1326 NQGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLIS 1385 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + V NV L +K+ +D + + K + ++A+ Sbjct 1386 AGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVIEKCQVTSIAGTKALSLQLAKNLCR 1445 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 +VK F T + S+ +C L+E + L ++ L ++ + + Sbjct 1446 DVK-FETNACDSLFSD--------SCFVSSYDVLQEVELLRHDIQLDDDARVFVQAHMDN 1496 Query 446 HPDSATLVSDID 457 P LV+ D Sbjct 1497 LPADWRLVNKFD 1508 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 91/242 (38%), Gaps = 26/242 (11%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V E+ + + I F LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVEFNDKPKVKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 AV TL P E + T + L+ + YLFDE GE +A MYCSF PD++ Sbjct 892 AVESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDE---- 947 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 DC + + + + DD + QEED + Q V + D Sbjct 948 DCVAADVVDADENQGDDADDSAAL------------VTDTQEEDGV-AKGQVGVAESDAR 994 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVVQT----IEVNSFSG-YLKLTDNVYIKNADIVEEA 231 D VE E+ +V +F Y + Y D Sbjct 995 LDQVEAFDIEKVEDPILNELSAELNAPADKTYEDVLAFDAIYSEALSAFYAVPGDETHFK 1054 Query 232 KK 233 Sbjct 1055 VC 1056 Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 45/239 (19%), Positives = 81/239 (34%), Gaps = 28/239 (12%) Query 756 VDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDT-LRVEAF 814 D + V S Q + D+ K++ +E P D T V AF Sbjct 978 EDGVAKGQVGVAESDARLDQV-----EAFDIEKVEDPILNELSAELNAPADKTYEDVLAF 1032 Query 815 EYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNP 874 + + L + + +K G S NC+L + L+ +Q + L+F Sbjct 1033 DAIY---SEALSAFYAVPGDETHFKVC---GFYSPAIERTNCWLRSTLIVMQSLPLEFKD 1086 Query 875 PALQDAYYRARAGEAANFCALILAYCNKTVGEL--GDVRETMSYLFQHANLDSCKRVLNV 932 +Q + ++ F ++ K++ G V + + S K N Sbjct 1087 LEMQKLWLSYKSSYNKEFVDKLVKSVPKSIILPQGGYVADFAYFFLSQ---CSFKAYANW 1143 Query 933 VCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSA 991 C C L+G++A+ + G V C CG T L+ + P+ + Sbjct 1144 RCLKCDM-DLKLQGLDAMFFYG--------DVVSHVCKCGTGMT--LLSADIPYTLHFG 1191 >sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM) OX=11144 GN=1a PE=1 SV=1 Length=4474 Score = 1301 bits (3366), Expect = 0.0, Method: Composition-based stats. Identities = 365/1333 (27%), Positives = 598/1333 (45%), Gaps = 126/1333 (9%) Query 695 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 747 DW + + G+ +K G+ V + +G + + ++ LL+ + Sbjct 1552 DWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLANK-- 1609 Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1610 --VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLS 1667 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 + A + D L +Y S L KW + K ++NNCY+ A L LQ Sbjct 1668 AADLAAVKDAFGFDEPQLLQYYSMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1726 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 + LKF + R+G+ F +L+LA + E D + + + A+L Sbjct 1727 LSLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGAT 1786 Query 928 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 987 L +CK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF+ Sbjct 1787 CDLEFICK-CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLV-HCTQFNVPFL 1844 Query 988 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1047 + S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1845 ICSNTPEGKKLPDDV-VAANIFTG-GSVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTD 1902 Query 1048 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPN-- 1104 Y +N T + TY LD V C P L YY + Y+T +PI + + Sbjct 1903 CLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVE 1961 Query 1105 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1163 + NFK V +I A+ LN G+ E K+T +P GDVV Y + Sbjct 1962 GVYTNFKLVGHDI--AEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSG 2019 Query 1164 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD----------- 1208 G KP++W H + TY +P+ C ++ PV+ S D Sbjct 2020 GCVTFGKPVIWRGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDRRPVPSAVLVT 2078 Query 1209 ---------VLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVG---- 1255 + +E + AC V +++V + V VK ++ G Sbjct 2079 GAASGADASAISTEPGTAKEQKACAS-DSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKP 2137 Query 1256 -----DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLA 1310 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2138 VKWNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPT------- 2190 Query 1311 AVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTL 1357 + Y K ++K++ ++ R + C + +F Sbjct 2191 ---------VREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLY 2241 Query 1358 LLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLI-----NII 1412 F N+ K T +A + + + S+ + Sbjct 2242 CFSWIKF----NTDNKVIYTTEVASKLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFL 2297 Query 1413 IWF--LLLSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNV 1458 +WF L +V L ++ + + + G+ + C Y+ GY +S Sbjct 2298 LWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSS--- 2354 Query 1459 TIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYIL 1515 +C GS+ C +C SG D LD Y S+ +Q + SF + ++ F LV E + Y L Sbjct 2355 ----FCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDY-ISLFKLVVELVIGYSL 2409 Query 1516 FTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAPISAMVRMYIFFASFY 1573 +T FY L + MQL ++ F+ + W L + + M P ++R YI + Y Sbjct 2410 YTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMY 2469 Query 1574 YVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWN 1633 V+ HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WN Sbjct 2470 KVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWN 2529 Query 1634 CVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQK 1693 C+NC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Sbjct 2530 CLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQR 2589 Query 1694 TYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILL 1753 Y+ S S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P+L+ Sbjct 2590 VYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLM 2647 Query 1754 LDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLS 1813 +++ L++ V+ MFD YV + +V + L + V A L + V L+ V+ Sbjct 2648 VEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQVMD 2707 Query 1814 TFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGA 1872 TF+ AR+ +DSDVETK + + + + + +EVT +SCNN + TY K + + DLG Sbjct 2708 TFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGV 2767 Query 1873 CIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQV 1932 I +A+H+ + VAK+ N+A IW+V F LS L+ ++R A K L KLT Sbjct 2768 LIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEAN 2827 Query 1933 VNVVTTKIALKGG 1945 V ++TT +LKGG Sbjct 2828 VPILTTPFSLKGG 2840 Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats. Identities = 68/252 (27%), Positives = 117/252 (46%), Gaps = 18/252 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA A E+ D + Sbjct 1318 CITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVK 1377 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGP--NVNKGEDIQLLKSAYENFNQHEVLLAPLLS 332 G +VGG +G L K L++VGP + E LL+ AY++ N+ + ++ L+S Sbjct 1378 AQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLIS 1437 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1438 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQLAKNLCR 1497 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 +VK F+T + S+ ++ L+E + L ++ L ++ N + Sbjct 1498 DVK-FVTNACSSLFS--------ESSFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1548 Query 446 HPDSATLVSDID 457 P LV+ D Sbjct 1549 LPTDWRLVNKFD 1560 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 91/233 (39%), Gaps = 24/233 (10%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V EV + + I F LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 AV TL P E + T + L+ YLFDE GE +AS MYCSF PDED Sbjct 892 AVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED---- 947 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 C + + + + A + + QEED + +++ V D Sbjct 948 -CVATDVVYADENQD------------DDADDPVVLVADTQEEDGV---AREQVDSADSE 991 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 229 T Q + E + EV + + AD ++ Sbjct 992 ICVAHTGGQEMTEPDVVGSQTPIASAEETEVGEACDREGIAEVKATVCADALD 1044 Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 79/205 (39%), Gaps = 23/205 (11%) Query 785 DVTKIKPHNSHEGKTFYVLPNDDT-LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQV 843 D+ K++ E +T P D T V AF+ + L + + + +K Sbjct 1054 DIEKVEDSILSELQTELNAPADKTYEDVLAFDAIY---SETLSAFYAVPSDETHFKVC-- 1108 Query 844 NGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKT 903 G S NC+L + L+ +Q + L+F +Q + +AG F ++ K+ Sbjct 1109 -GFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKS 1167 Query 904 VGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQF 961 + G V + + S K N C CG + L+G++AV + G Sbjct 1168 IILPQGGYVADFAYFFLSQ---CSFKVHANWRCLKCGM-ELKLQGLDAVFFYG------- 1216 Query 962 KKGVQIPCTCGKQATKYLVQQESPF 986 V C CG T L+ + P+ Sbjct 1217 -DVVSHMCKCGNSMT--LLSADIPY 1238 >sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus (strain 2) OX=76344 GN=1a PE=3 SV=1 Length=4416 Score = 1300 bits (3363), Expect = 0.0, Method: Composition-based stats. Identities = 373/1327 (28%), Positives = 602/1327 (45%), Gaps = 119/1327 (9%) Query 695 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 747 DW + + G+ +K G+ V + +G +V + ++ LL+ + Sbjct 1500 DWRLVNKFDSVDGVRTVKYFECPGEIFVSSQGKKFGYVQNGSFKVASVSQIRALLANK-- 1557 Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1558 --VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLS 1615 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 + A D L +Y + L KW + K ++NNCY+ A L LQ Sbjct 1616 AADLVAVTDAFGFDEPQLLKYYNMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1674 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 + LKF+ Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1675 LSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSGAT 1734 Query 928 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 987 VCK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF+ Sbjct 1735 CDFEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYTIACTCGNKLV-HCTQLNVPFL 1792 Query 988 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1047 + S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1793 ICSNKPEGKKLPDDV-VAANIFTG-GSLGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTD 1850 Query 1048 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPN-- 1104 Y +N T + K T+ LD V C E +P L YY + Y+T +PI + + Sbjct 1851 CLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYT-KPIIKAQFRTFEKVE 1909 Query 1105 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1163 + NFK V +I A+ N G+ E K+T +P GDVV Y + Sbjct 1910 GVYTNFKLVGHSI--AEKFNAKLGFDCNSPFTEYKITEWPTATGDVVLASDDLYVSRYSG 1967 Query 1164 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD-------VLKS 1212 G KP++W H + TY +P+ C ++ PV+ S D VL + Sbjct 1968 GCVTFGKPVIWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLVT 2026 Query 1213 EDAQGMD---NLACEDLKPVSEEVVEN---------PTIQKDVLECNV----KTTEVVGD 1256 G A E S+ VV+ DV E + K +V Sbjct 2027 GALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVEDS 2086 Query 1257 IILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVP 1316 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2087 VVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELSRLVNSPT------------- 2133 Query 1317 WDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLCT 1363 + Y K + K+V ++ R + C + + +FF Sbjct 2134 ---VREYVKWGMTKIVIPAKLVLLRDEKQEFVAPKVVKAKVIACYSAVKWFFLYCFSWIK 2190 Query 1364 FTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLI-----NIIIWF--L 1416 F N+ K T +A ++ + + S+ ++WF L Sbjct 2191 F----NTDNKVIYTTEVASKLTFNLCCLAFKNALQTFNWNVVSRGFFLVATVFLLWFNFL 2246 Query 1417 LLSVCLGSLI---------YSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIATYC 1464 +V L + + + + G+ + C Y+ GY +S +C Sbjct 2247 YANVILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFTLCDLYQVSDVGYRSS-------FC 2299 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRFFY 1521 GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T FY Sbjct 2300 NGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDY-ISLFKLVVELVIGYSLYTVCFY 2358 Query 1522 VLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 1579 L MQL ++ F+ + W + + M P ++R YI + Y ++ Sbjct 2359 PLFGLIGMQLLTTWLPEFFMLETMHWSARFFVFVANMLPAFTLLRFYIVVTAMYKIFCLC 2418 Query 1580 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 1639 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC Sbjct 2419 RHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTGFCAKHQWNCLNCSA 2478 Query 1640 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 1699 F G+TFI+ E A DLS + KRP+NPTD + Y+V V S+ L++++ GQ+ Y+ S Sbjct 2479 FGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYDDVS 2538 Query 1700 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV 1759 S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P+LL+++ L+ Sbjct 2539 ASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLLVEKKLI 2596 Query 1760 SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAA 1819 + V+ MFD YV++ +V + L + V A L + V L+ V+ TFI A Sbjct 2597 TTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCA 2656 Query 1820 RQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSA 1878 R+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I +A Sbjct 2657 RRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNA 2716 Query 1879 RHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTT 1938 +H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++TT Sbjct 2717 KHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTT 2776 Query 1939 KIALKGG 1945 +LKGG Sbjct 2777 PFSLKGG 2783 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 115/252 (46%), Gaps = 18/252 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA + E+ D + Sbjct 1266 CITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVK 1325 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLLS 332 G +VG +G NL K L++VGP+ + L+ AY++ N+ + ++ L+S Sbjct 1326 NQGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLIS 1385 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + V NV L +K+ +D + + K + ++A+ Sbjct 1386 AGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVIEKCQVTSIAGTKALSLQLAKNLCR 1445 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 +VK F T + S+ +C L+E + L ++ L ++ + + Sbjct 1446 DVK-FETNACDSLFSD--------SCFVSSYDVLQEVELLRHDIQLDDDARVFVQAHMDN 1496 Query 446 HPDSATLVSDID 457 P LV+ D Sbjct 1497 LPADWRLVNKFD 1508 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 91/242 (38%), Gaps = 26/242 (11%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F D V E+ + + I F LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVEFNDKPKVKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 AV TL P E + T + L+ + YLFDE GE +A MYCSF PD++ Sbjct 892 AVESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDE---- 947 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 DC + + + + DD + QEED + Q V + D Sbjct 948 DCVAADVVDADENQGDDADDSAAL------------VTDTQEEDGV-AKGQVGVAESDAR 994 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVVQT----IEVNSFSG-YLKLTDNVYIKNADIVEEA 231 D VE E+ +V +F Y + Y D Sbjct 995 LDQVEAFDIEKVEDPILNELSAELNAPADKTYEDVLAFDAIYSEALSAFYAVPGDETHFK 1054 Query 232 KK 233 Sbjct 1055 VC 1056 Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 45/239 (19%), Positives = 81/239 (34%), Gaps = 28/239 (12%) Query 756 VDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDT-LRVEAF 814 D + V S Q + D+ K++ +E P D T V AF Sbjct 978 EDGVAKGQVGVAESDARLDQV-----EAFDIEKVEDPILNELSAELNAPADKTYEDVLAF 1032 Query 815 EYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNP 874 + + L + + +K G S NC+L + L+ +Q + L+F Sbjct 1033 DAIY---SEALSAFYAVPGDETHFKVC---GFYSPAIERTNCWLRSTLIVMQSLPLEFKD 1086 Query 875 PALQDAYYRARAGEAANFCALILAYCNKTVGEL--GDVRETMSYLFQHANLDSCKRVLNV 932 +Q + ++ F ++ K++ G V + + S K N Sbjct 1087 LEMQKLWLSYKSSYNKEFVDKLVKSVPKSIILPQGGYVADFAYFFLSQ---CSFKAYANW 1143 Query 933 VCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSA 991 C C L+G++A+ + G V C CG T L+ + P+ + Sbjct 1144 RCLKCDM-DLKLQGLDAMFFYG--------DVVSHVCKCGTGMT--LLSADIPYTLHFG 1191 >sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 1235 bits (3196), Expect = 0.0, Method: Composition-based stats. Identities = 362/1266 (29%), Positives = 603/1266 (48%), Gaps = 78/1266 (6%) Query 713 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1069 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1128 E +P L YY Y+T++ I + + NFK + I D LN G Sbjct 1882 KKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTI--CDILNAKLG 1939 Query 1129 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 1185 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 1186 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLK-PVSEEVVENPTIQKDVL 1244 ++ + N FDVLK +D +++ D K +++ ++K Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPF- 2048 Query 1245 ECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL 1304 +V +I+ + +K + + D+ ++ ++ N LS + + T+ Sbjct 2049 -------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTI 2101 Query 1305 ---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ 1360 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2102 RKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFG 2154 Query 1361 LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLL 1418 + K T +A + + +F K ++ II I+ L Sbjct 2155 WIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWF 2210 Query 1419 SVCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 + ++I+S L + S + + C Y + YC Sbjct 2211 NFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGF----KNQYC 2266 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYV 1522 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY Sbjct 2267 NGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYP 2326 Query 1523 LGLAAIMQLFFSYFAVHFISN--SWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L +Q+ ++ F+ + W + L+++L M P +R YI ASF ++ + Sbjct 2327 LFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFR 2386 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV GC+ C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2387 HVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSY 2446 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI+ E A DLS + KRPI PTD + + V V + L++++ GQ+TY+ + Sbjct 2447 KPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNA 2506 Query 1701 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 1760 S FV+ NL + KG ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2507 SLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLIT 2564 Query 1761 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 1820 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR Sbjct 2565 TANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCAR 2624 Query 1821 QGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 1879 + +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+ Sbjct 2625 KSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAK 2684 Query 1880 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 1939 H+ VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2685 HVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTP 2744 Query 1940 IALKGG 1945 +LKGG Sbjct 2745 FSLKGG 2750 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 110/251 (44%), Gaps = 17/251 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 332 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + T V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 446 HPDSATLVSDI 456 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 47/183 (26%), Positives = 84/183 (46%), Gaps = 5/183 (3%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEE 115 DA+ + L P EL + L + + +LFDE+GE LAS +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFL 970 Query 116 GDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDG 175 + EE + + T + ++ E+ ++ + S V + Sbjct 971 EESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVE 1030 Query 176 SED 178 D Sbjct 1031 MSD 1033 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 72/196 (37%), Gaps = 22/196 (11%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 899 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 N V + G V + + L + V C C LKG++A+ + G Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYG-- 1170 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 V C CG+ L+ + PF A + LK F Y+ Sbjct 1171 ------DVVSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1017 HYKHITSKETLYCIDG 1032 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 1234 bits (3193), Expect = 0.0, Method: Composition-based stats. Identities = 362/1266 (29%), Positives = 602/1266 (48%), Gaps = 78/1266 (6%) Query 713 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 +G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 NFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1069 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1128 E P L YY Y+T++ I + + NFK + I D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTI--CDILNAKLG 1939 Query 1129 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 1185 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 1186 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLK-PVSEEVVENPTIQKDVL 1244 ++ + N FDVLK +D +++ D K +++ ++K Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPF- 2048 Query 1245 ECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL 1304 +V +I+ + +K + + D+ ++ ++ N+LS + + T+ Sbjct 2049 -------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANDLSMAVNVPTI 2101 Query 1305 ---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ 1360 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2102 RKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFG 2154 Query 1361 LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLL 1418 + K T +A + + +F K ++ II I+ L Sbjct 2155 WIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWF 2210 Query 1419 SVCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 + ++I+S L + S + + C Y + YC Sbjct 2211 NFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGF----KNQYC 2266 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYV 1522 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY Sbjct 2267 NGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYP 2326 Query 1523 LGLAAIMQLFFSYFAVHFISN--SWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L +Q+ ++ F+ + W + L+++L M P +R YI ASF ++ + Sbjct 2327 LFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFR 2386 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV GC+ C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2387 HVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSY 2446 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI+ E A DLS + KRPI PTD + + V V + L++++ GQ+TY+ + Sbjct 2447 KPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNA 2506 Query 1701 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 1760 S FV+ NL + KG ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2507 SLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLIT 2564 Query 1761 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 1820 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR Sbjct 2565 TANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCAR 2624 Query 1821 QGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 1879 + +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+ Sbjct 2625 KSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAK 2684 Query 1880 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 1939 H+ VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2685 HVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTP 2744 Query 1940 IALKGG 1945 +LKGG Sbjct 2745 FSLKGG 2750 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 110/251 (44%), Gaps = 17/251 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 332 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + T V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 446 HPDSATLVSDI 456 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 47/183 (26%), Positives = 84/183 (46%), Gaps = 5/183 (3%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVV 910 Query 59 DAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEE 115 DA+ + L P EL + L + + +LFDE+GE LAS +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFL 970 Query 116 GDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDG 175 + EE + + T + ++ E+ ++ + S V + Sbjct 971 EESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVE 1030 Query 176 SED 178 D Sbjct 1031 MSD 1033 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 72/196 (37%), Gaps = 22/196 (11%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 899 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 N V + G V + + L + V C C LKG++A+ + G Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYG-- 1170 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 V C CG+ L+ + PF A + LK F Y+ Sbjct 1171 ------DVVSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1017 HYKHITSKETLYCIDG 1032 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1 Length=4383 Score = 1234 bits (3192), Expect = 0.0, Method: Composition-based stats. Identities = 362/1266 (29%), Positives = 603/1266 (48%), Gaps = 78/1266 (6%) Query 713 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1069 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1128 E +P L YY Y+T++ I + + NFK + I D LN G Sbjct 1882 KKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTI--CDILNAKLG 1939 Query 1129 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 1185 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 1186 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLK-PVSEEVVENPTIQKDVL 1244 ++ + N FDVLK +D +++ D K +++ ++K Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPF- 2048 Query 1245 ECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL 1304 +V +I+ + +K + + D+ ++ ++ N LS + + T+ Sbjct 2049 -------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTI 2101 Query 1305 ---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ 1360 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2102 RKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFG 2154 Query 1361 LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLL 1418 + K T +A + + +F K ++ II I+ L Sbjct 2155 WIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWF 2210 Query 1419 SVCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 + ++I+S L + S + + C Y + YC Sbjct 2211 NFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGF----KNQYC 2266 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYV 1522 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY Sbjct 2267 NGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYP 2326 Query 1523 LGLAAIMQLFFSYFAVHFISN--SWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L +Q+ ++ F+ + W + L+++L M P +R YI ASF ++ + Sbjct 2327 LFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFR 2386 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV GC+ C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2387 HVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSY 2446 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI+ E A DLS + KRPI PTD + + V V + L++++ GQ+TY+ + Sbjct 2447 KPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNA 2506 Query 1701 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 1760 S FV+ NL + KG ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2507 SLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLIT 2564 Query 1761 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 1820 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR Sbjct 2565 TANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCAR 2624 Query 1821 QGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 1879 + +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+ Sbjct 2625 KSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAK 2684 Query 1880 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 1939 H+ VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2685 HVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTP 2744 Query 1940 IALKGG 1945 +LKGG Sbjct 2745 FSLKGG 2750 Score = 200 bits (508), Expect = 7e-50, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 110/251 (44%), Gaps = 17/251 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 332 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + T V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 446 HPDSATLVSDI 456 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 47/183 (26%), Positives = 84/183 (46%), Gaps = 5/183 (3%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEE 115 DA+ + L P EL + L + + +LFDE+GE LAS +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFL 970 Query 116 GDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDG 175 + EE + + T + ++ E+ ++ + S V + Sbjct 971 EESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVE 1030 Query 176 SED 178 D Sbjct 1031 MSD 1033 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 72/196 (37%), Gaps = 22/196 (11%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 899 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 N V + G V + + L + V C C LKG++A+ + G Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYG-- 1170 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 V C CG+ L+ + PF A + LK F Y+ Sbjct 1171 ------DVVSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1017 HYKHITSKETLYCIDG 1032 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 1233 bits (3190), Expect = 0.0, Method: Composition-based stats. Identities = 364/1290 (28%), Positives = 593/1290 (46%), Gaps = 82/1290 (6%) Query 694 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 746 KDW + G++ +K + + DG T + + LL+ Sbjct 1563 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1619 Query 747 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 806 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1620 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1678 Query 807 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1679 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1737 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1738 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1797 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1798 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1855 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1972 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1973 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2030 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2031 KGCETFGKPVIWLCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2074 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2075 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2134 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2135 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2190 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 1396 R + ++ + F + L FT + + N L+ + Sbjct 2191 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFC----LALKNA 2244 Query 1397 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 1440 F + F K + WF L ++V I+ + + + G Sbjct 2245 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2304 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 1498 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2305 LVTICDFYSKLGVGFTS----HFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFD 2360 Query 1499 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQM 1556 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2361 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2420 Query 1557 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 1616 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2421 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2480 Query 1617 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1676 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2481 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2540 Query 1677 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 1736 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2541 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2598 Query 1737 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 1796 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2599 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2658 Query 1797 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 1855 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2659 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2718 Query 1856 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 1915 + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ A Sbjct 2719 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKAC 2778 Query 1916 KKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 K L KLT V ++TT +LKGG Sbjct 2779 VKTGLKLKLTFNKQEASVPILTTPFSLKGG 2808 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 17/254 (7%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 274 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 331 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 332 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPK 390 SAGIF SL + V V L +K +D + + K + ++ Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVG 1507 Query 391 EEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDI------NGN 444 +K K + C ++ ++E L ++ L D+ Sbjct 1508 RVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMT 1559 Query 445 LHPDSATLVSDIDI 458 P L++ D+ Sbjct 1560 SLPKDWRLINKFDV 1573 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 6/194 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 A+ L + + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 E+ T +D + + + + E+ D+ + V D Sbjct 929 SEAVEDTIDGVVE--DTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND 986 Query 177 EDNQTTTIQTIVEV 190 +++ T +V Sbjct 987 DEDVVTGDNDDEDV 1000 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 72/197 (37%), Gaps = 21/197 (11%) Query 782 DGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYP 841 D D + + + ++ Y L V D ++S + + Y Sbjct 1064 DNDDQIVVTGDDVDDIESVYDFDTYKALLV-------FNDVYNDALFVSYGSSVETETYF 1116 Query 842 QVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCN 901 +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1117 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1176 Query 902 KTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 959 K + G V + + + N C CG L G++AV + G + Sbjct 1177 KAIVLPQGGYVADFAYWFLNQFD---INAYANWCCLKCGF-SFDLNGLDAVFFYGDI--- 1229 Query 960 QFKKGVQIPCTCGKQAT 976 V C CG T Sbjct 1230 -----VSHVCKCGHNMT 1241 >sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 1233 bits (3190), Expect = 0.0, Method: Composition-based stats. Identities = 359/1266 (28%), Positives = 602/1266 (48%), Gaps = 78/1266 (6%) Query 713 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1069 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1128 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDILNAKLG 1939 Query 1129 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 1185 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 1186 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLK-PVSEEVVENPTIQKDVL 1244 ++ + N FDVLK +D +++ D K P +++ ++K Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAKEPKEINIIKLSGVKKPF- 2048 Query 1245 ECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL 1304 +V +I+ + +K + + D+ ++ ++ N LSR + + T+ Sbjct 2049 -------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTI 2101 Query 1305 ---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ 1360 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2102 RKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFG 2154 Query 1361 LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLL 1418 + K T +A + + +F K ++ II I+ L Sbjct 2155 WIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWF 2210 Query 1419 SVCLGSLIY--------------STAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 + ++I+ + + + + + C Y + YC Sbjct 2211 NFIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSLVTICDLYSIQDVGF----KNQYC 2266 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYV 1522 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY Sbjct 2267 NGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYP 2326 Query 1523 LGLAAIMQLFFSYFAVHFISN--SWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L +Q+ ++ + + W + L+++L M P +R YI ASF ++ + Sbjct 2327 LFALISIQILTTWLPELLMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFR 2386 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV GC+ S C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2387 HVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSY 2446 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI+ E A DLS + KRPI PTD + + V V + L++D+ GQ+TY+ + Sbjct 2447 KPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNA 2506 Query 1701 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 1760 S FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2507 SLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKILIT 2564 Query 1761 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 1820 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR Sbjct 2565 TANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCAR 2624 Query 1821 QGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 1879 + +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+ Sbjct 2625 KSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAK 2684 Query 1880 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 1939 H+ VAK ++ IW+V F LS + +++ A K L +LT V+V+TT Sbjct 2685 HVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLELTYNKQMANVSVLTTP 2744 Query 1940 IALKGG 1945 +LKGG Sbjct 2745 FSLKGG 2750 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 111/251 (44%), Gaps = 17/251 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 332 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + T + V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 446 HPDSATLVSDI 456 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 54/193 (28%), Positives = 86/193 (45%), Gaps = 7/193 (4%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE-- 113 DA+ + L P EL + L + + +LFDE+GE LA +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFL 970 Query 114 EEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQ 173 EE EE++ E T E +S L+ + DSQ Q Sbjct 971 EESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVQ 1030 Query 174 DGSEDNQTTTIQT 186 + + IQ Sbjct 1031 MSDFGDLESVIQD 1043 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 72/196 (37%), Gaps = 22/196 (11%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 899 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 N V + G V + + L + V C C LKG++A+ + G Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYG-- 1170 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 V C CG+ L+ + PF A + LK F Y+ Sbjct 1171 ------DVVSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1017 HYKHITSKETLYCIDG 1032 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 1233 bits (3190), Expect = 0.0, Method: Composition-based stats. Identities = 362/1266 (29%), Positives = 603/1266 (48%), Gaps = 78/1266 (6%) Query 713 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1069 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1128 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDILNAKLG 1939 Query 1129 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 1185 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 1186 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLK-PVSEEVVENPTIQKDVL 1244 ++ + N FDVLK +D +++ D K P +++ ++K Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAKEPKEINIIKLSGVKKPF- 2048 Query 1245 ECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL 1304 +V +I+ + +K + + D+ ++ ++ N LSR + + T+ Sbjct 2049 -------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTI 2101 Query 1305 ---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ 1360 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2102 RKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFG 2154 Query 1361 LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLL 1418 + K T +A + + +F K ++ II I+ L Sbjct 2155 WIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWF 2210 Query 1419 SVCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 + ++I+S L + + + + C Y + YC Sbjct 2211 NFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGF----KNQYC 2266 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYV 1522 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY Sbjct 2267 NGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYP 2326 Query 1523 LGLAAIMQLFFSYFAVHFISN--SWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L +Q+ ++ F+ + W + L+++L M P +R YI ASF ++ + Sbjct 2327 LFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFR 2386 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV GC+ S C+ CYKRNR+ RV+C+TIV G+ R + ANGG GFC H WNC++CD++ Sbjct 2387 HVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDAMANGGTGFCSKHQWNCIDCDSY 2446 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI+ E A DLS + KRPI PTD + + V V + L++D+ GQ+TY+ + Sbjct 2447 KPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNA 2506 Query 1701 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 1760 S FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2507 SLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLIT 2564 Query 1761 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 1820 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR Sbjct 2565 TANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCAR 2624 Query 1821 QGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 1879 + +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+ Sbjct 2625 KSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAK 2684 Query 1880 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 1939 H+ VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2685 HVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTP 2744 Query 1940 IALKGG 1945 +LKGG Sbjct 2745 FSLKGG 2750 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 111/251 (44%), Gaps = 17/251 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 332 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + T + V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 446 HPDSATLVSDI 456 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 82/183 (45%), Gaps = 5/183 (3%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEE 115 DA+ + L P EL + L + + +LFDE+GE LA +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFL 970 Query 116 GDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDG 175 + EE + + T + ++ E+ ++ + S V + Sbjct 971 EESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVQ 1030 Query 176 SED 178 D Sbjct 1031 MSD 1033 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 72/196 (37%), Gaps = 22/196 (11%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 899 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 N V + G V + + L + V C C LKG++A+ + G Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYG-- 1170 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 V C CG+ L+ + PF A + LK F Y+ Sbjct 1171 ------DVVSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1017 HYKHITSKETLYCIDG 1032 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1 Length=4383 Score = 1233 bits (3189), Expect = 0.0, Method: Composition-based stats. Identities = 362/1266 (29%), Positives = 602/1266 (48%), Gaps = 78/1266 (6%) Query 713 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 +G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 NFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1069 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1128 E P L YY Y+T++ I + + NFK + I D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTI--CDILNAKLG 1939 Query 1129 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 1185 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 1186 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLK-PVSEEVVENPTIQKDVL 1244 ++ + N FDVLK +D +++ D K +++ ++K Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAKESKEINIIKLSGVKKPF- 2048 Query 1245 ECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL 1304 +V +I+ + +K + + D+ ++ ++ N+LS + + T+ Sbjct 2049 -------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANDLSMAVNVPTI 2101 Query 1305 ---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ 1360 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2102 RKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFG 2154 Query 1361 LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLL 1418 + K T +A + + +F K ++ II I+ L Sbjct 2155 WIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWF 2210 Query 1419 SVCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 + ++I+S L + S + + C Y + YC Sbjct 2211 NFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGF----KNQYC 2266 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYV 1522 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY Sbjct 2267 NGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYP 2326 Query 1523 LGLAAIMQLFFSYFAVHFISN--SWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L +Q+ ++ F+ + W + L+++L M P +R YI ASF ++ + Sbjct 2327 LFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFR 2386 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV GC+ C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2387 HVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSY 2446 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI+ E A DLS + KRPI PTD + + V V + L++++ GQ+TY+ + Sbjct 2447 KPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNA 2506 Query 1701 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 1760 S FV+ NL + KG ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2507 SLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLIT 2564 Query 1761 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 1820 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR Sbjct 2565 TANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCAR 2624 Query 1821 QGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 1879 + +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+ Sbjct 2625 KSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAK 2684 Query 1880 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 1939 H+ VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2685 HVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTP 2744 Query 1940 IALKGG 1945 +LKGG Sbjct 2745 FSLKGG 2750 Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 110/251 (44%), Gaps = 17/251 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 332 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + T V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 446 HPDSATLVSDI 456 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 148 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 47/183 (26%), Positives = 84/183 (46%), Gaps = 5/183 (3%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVV 910 Query 59 DAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEE 115 DA+ + L P EL + L + + +LFDE+GE LAS +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFL 970 Query 116 GDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDG 175 + EE + + T + ++ E+ ++ + S V + Sbjct 971 EESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVE 1030 Query 176 SED 178 D Sbjct 1031 MSD 1033 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 72/196 (37%), Gaps = 22/196 (11%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 899 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 N V + G V + + L + V C C LKG++A+ + G Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYG-- 1170 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 V C CG+ L+ + PF A + LK F Y+ Sbjct 1171 ------DVVSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1017 HYKHITSKETLYCIDG 1032 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 1232 bits (3188), Expect = 0.0, Method: Composition-based stats. Identities = 364/1290 (28%), Positives = 593/1290 (46%), Gaps = 82/1290 (6%) Query 694 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 746 KDW + G++ +K + + DG T + + LL+ Sbjct 1593 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1649 Query 747 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 806 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1650 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1708 Query 807 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1709 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1767 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1768 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1827 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1828 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1885 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 2002 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 2003 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2060 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2061 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2104 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2105 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2164 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2165 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2220 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 1396 R + ++ + F + L FT + + N L+ + Sbjct 2221 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFC----LALKNA 2274 Query 1397 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 1440 F + F K + WF L ++V I+ + + + G Sbjct 2275 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2334 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 1498 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2335 LVTICDFYSKLGVGFTS----HFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2390 Query 1499 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQM 1556 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2391 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2450 Query 1557 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 1616 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2451 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2510 Query 1617 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1676 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2511 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2570 Query 1677 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 1736 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2571 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2628 Query 1737 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 1796 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2629 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2688 Query 1797 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 1855 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2689 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2748 Query 1856 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 1915 + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ A Sbjct 2749 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKAC 2808 Query 1916 KKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 K L KLT V ++TT +LKGG Sbjct 2809 VKTGLKLKLTFNKQEASVPILTTPFSLKGG 2838 Score = 207 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 66/265 (25%), Positives = 111/265 (42%), Gaps = 18/265 (7%) Query 203 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 262 + E+ G L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A Sbjct 1348 SSFELPQLYG-LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAG 1406 Query 263 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENF 320 E+ + + G +VG V +G L K L++VGP+ + + LL AY++ Sbjct 1407 KKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHL 1466 Query 321 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEK 379 N ++ L+ L+SAGIF SL + V V L +K +D + + K Sbjct 1467 NNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTK 1526 Query 380 QVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYI 439 + ++ +K K + C ++ ++E L ++ L Sbjct 1527 ALAVRLTANVGRVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNN 1578 Query 440 DI------NGNLHPDSATLVSDIDI 458 D+ P L++ D+ Sbjct 1579 DVRDYLLSKMTSLPKDWRLINKFDV 1603 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 48/194 (25%), Positives = 84/194 (43%), Gaps = 6/194 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 A+ L E + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 E+ T +D + + + + E+ D+ + V D Sbjct 929 SEAVEDTIDGVVE--DTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND 986 Query 177 EDNQTTTIQTIVEV 190 +++ T +V Sbjct 987 DEDVVTGDNDDEDV 1000 Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 41/197 (21%), Positives = 72/197 (37%), Gaps = 21/197 (11%) Query 782 DGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYP 841 D D + + + ++ Y L V D ++S + + Y Sbjct 1094 DNDDQIVVTGDDVDDIESIYDFDTYKALLV-------FNDVYNDALFVSYGSSVETETYF 1146 Query 842 QVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCN 901 +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1147 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1206 Query 902 KTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 959 K + G V + + + N C CG L G++A+ + G + Sbjct 1207 KAIVLPQGGFVADFAYWFLNQFD---INAYANWCCLKCGF-SFDLNGLDALFFYGDI--- 1259 Query 960 QFKKGVQIPCTCGKQAT 976 V C CG T Sbjct 1260 -----VSHVCKCGHNMT 1271 >sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1 Length=4441 Score = 1231 bits (3186), Expect = 0.0, Method: Composition-based stats. Identities = 364/1290 (28%), Positives = 593/1290 (46%), Gaps = 82/1290 (6%) Query 694 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 746 KDW + G++ +K + + DG T + + LL+ Sbjct 1563 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1619 Query 747 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 806 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1620 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1678 Query 807 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1679 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1737 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1738 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1797 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1798 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1855 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1972 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1973 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2030 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2031 KGCETFGKPVIWLCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2074 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2075 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2134 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2135 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2190 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 1396 R + ++ + F + L FT + + N L+ + Sbjct 2191 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFC----LALKNA 2244 Query 1397 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 1440 F + F K + WF L ++V I+ + + + G Sbjct 2245 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2304 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 1498 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2305 LVTICDFYSKLGVGFTS----HFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFD 2360 Query 1499 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQM 1556 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2361 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2420 Query 1557 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 1616 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2421 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2480 Query 1617 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1676 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2481 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2540 Query 1677 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 1736 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2541 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2598 Query 1737 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 1796 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2599 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2658 Query 1797 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 1855 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2659 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2718 Query 1856 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 1915 + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ A Sbjct 2719 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKAC 2778 Query 1916 KKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 K L KLT V ++TT +LKGG Sbjct 2779 VKTGLKLKLTFNKQEASVPILTTPFSLKGG 2808 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 17/254 (7%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 274 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 331 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 332 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPK 390 SAGIF SL + V V L +K +D + + K + ++ Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVG 1507 Query 391 EEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDI------NGN 444 +K K + C ++ ++E L ++ L D+ Sbjct 1508 RVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMT 1559 Query 445 LHPDSATLVSDIDI 458 P L++ D+ Sbjct 1560 SLPKDWRLINKFDV 1573 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 6/194 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 A+ L + + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 E+ T +D + + + + E+ D+ + V D Sbjct 929 SEAVEDTIDGVVE--DTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND 986 Query 177 EDNQTTTIQTIVEV 190 +++ T +V Sbjct 987 DEDVVTGDNDDEDV 1000 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 72/197 (37%), Gaps = 21/197 (11%) Query 782 DGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYP 841 D D + + + ++ Y L V D ++S + + Y Sbjct 1064 DNDDQIVVTGDDVDDIESVYDFDTYKALLV-------FNDVYNDALFVSYGSSVETETYF 1116 Query 842 QVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCN 901 +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1117 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1176 Query 902 KTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 959 K + G V + + + N C CG L G++AV + G + Sbjct 1177 KAIVLPQGGYVADFAYWFLNQFD---INAYANWCCLKCGF-SFDLNGLDAVFFYGDI--- 1229 Query 960 QFKKGVQIPCTCGKQAT 976 V C CG T Sbjct 1230 -----VSHVCKCGHNMT 1241 >sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus (strain Mebus) OX=11132 GN=1a PE=3 SV=1 Length=4383 Score = 1231 bits (3186), Expect = 0.0, Method: Composition-based stats. Identities = 362/1266 (29%), Positives = 603/1266 (48%), Gaps = 78/1266 (6%) Query 713 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1069 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1128 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDILNAKLG 1939 Query 1129 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 1185 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 1186 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLK-PVSEEVVENPTIQKDVL 1244 ++ + N FDVLK +D +++ D K P +++ ++K Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAKEPKEINIIKLSGVKKPF- 2048 Query 1245 ECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL 1304 +V +I+ + +K + + D+ ++ ++ N LSR + + T+ Sbjct 2049 -------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTI 2101 Query 1305 ---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ 1360 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2102 RKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFG 2154 Query 1361 LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLL 1418 + K T +A + + +F K ++ II I+ L Sbjct 2155 WIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWF 2210 Query 1419 SVCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 + ++I+S L + + + + C Y + YC Sbjct 2211 NFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGF----KNQYC 2266 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYV 1522 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY Sbjct 2267 NGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYP 2326 Query 1523 LGLAAIMQLFFSYFAVHFISN--SWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L +Q+ ++ F+ + W + L+++L M P +R YI ASF ++ + Sbjct 2327 LFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFR 2386 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV GC+ S C+ CYKRNR+ RV+C+TIV G+ R + ANGG GFC H WNC++CD++ Sbjct 2387 HVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDAMANGGTGFCSKHQWNCIDCDSY 2446 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI+ E A DLS + KRPI PTD + + V V + L++D+ GQ+TY+ + Sbjct 2447 KPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNA 2506 Query 1701 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 1760 S FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2507 SLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLIT 2564 Query 1761 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 1820 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR Sbjct 2565 TANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCAR 2624 Query 1821 QGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 1879 + +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+ Sbjct 2625 KSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAK 2684 Query 1880 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 1939 H+ VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2685 HVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTP 2744 Query 1940 IALKGG 1945 +LKGG Sbjct 2745 FSLKGG 2750 Score = 201 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 111/251 (44%), Gaps = 17/251 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 332 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + T + V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 446 HPDSATLVSDI 456 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 82/183 (45%), Gaps = 5/183 (3%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEE 115 DA+ + L P EL + L + + +LFDE+GE LA +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFL 970 Query 116 GDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDG 175 + EE + + T + ++ E+ ++ + S V + Sbjct 971 EESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVQ 1030 Query 176 SED 178 D Sbjct 1031 MSD 1033 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 72/196 (37%), Gaps = 22/196 (11%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 899 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 N V + G V + + L + V C C LKG++A+ + G Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYG-- 1170 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 V C CG+ L+ + PF A + LK F Y+ Sbjct 1171 ------DVVSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1017 HYKHITSKETLYCIDG 1032 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus (strain Quebec) OX=11133 GN=1a PE=3 SV=1 Length=4383 Score = 1231 bits (3184), Expect = 0.0, Method: Composition-based stats. Identities = 359/1266 (28%), Positives = 602/1266 (48%), Gaps = 78/1266 (6%) Query 713 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1069 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1128 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDILNAKLG 1939 Query 1129 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 1185 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 1186 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLK-PVSEEVVENPTIQKDVL 1244 ++ + N FDVLK +D +++ D K P +++ ++K Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAKEPKEINIIKLSGVKKPF- 2048 Query 1245 ECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL 1304 +V +I+ + +K + + D+ ++ ++ N LSR + + T+ Sbjct 2049 -------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTI 2101 Query 1305 ---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQ 1360 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2102 RKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFG 2154 Query 1361 LCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLL 1418 + K T +A + + +F K ++ II I+ L Sbjct 2155 WIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWF 2210 Query 1419 SVCLGSLIY--------------STAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 + ++I+ + + + + + C Y + YC Sbjct 2211 NFIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSLVTICDLYSIQDVGF----KNQYC 2266 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYV 1522 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY Sbjct 2267 NGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYP 2326 Query 1523 LGLAAIMQLFFSYFAVHFISN--SWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 L +Q+ ++ + + W + L+++L M P +R YI ASF ++ + Sbjct 2327 LFALISIQILTTWLPELLMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFR 2386 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 HV GC+ S C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2387 HVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSY 2446 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 1700 G+TFI+ E A DLS + KRPI PTD + + V V + L++D+ GQ+TY+ + Sbjct 2447 KPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNA 2506 Query 1701 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 1760 S FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2507 SLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKILIT 2564 Query 1761 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 1820 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR Sbjct 2565 TANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCAR 2624 Query 1821 QGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 1879 + +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+ Sbjct 2625 KSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAK 2684 Query 1880 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 1939 H+ VAK ++ IW+V F LS + +++ A K L +LT V+V+TT Sbjct 2685 HVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLELTYNKQMANVSVLTTP 2744 Query 1940 IALKGG 1945 +LKGG Sbjct 2745 FSLKGG 2750 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 111/251 (44%), Gaps = 17/251 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 332 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + T + V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 446 HPDSATLVSDI 456 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 54/193 (28%), Positives = 86/193 (45%), Gaps = 7/193 (4%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A VTF + TV E+ K++ + +ELD+ + +LN C + V+ ++ EF VV Sbjct 851 AGRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE-- 113 DA+ + L P EL + L + + +LFDE+GE LA +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFL 970 Query 114 EEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQ 173 EE EE++ E T E +S L+ + DSQ Q Sbjct 971 EESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVETSDSQVEEDVQ 1030 Query 174 DGSEDNQTTTIQT 186 + + IQ Sbjct 1031 MSDFGDLESVIQD 1043 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 72/196 (37%), Gaps = 22/196 (11%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 899 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 N V + G V + + L + V C C LKG++A+ + G Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYG-- 1170 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 V C CG+ L+ + PF A + LK F Y+ Sbjct 1171 ------DVVSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1017 HYKHITSKETLYCIDG 1032 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 1230 bits (3183), Expect = 0.0, Method: Composition-based stats. Identities = 364/1290 (28%), Positives = 592/1290 (46%), Gaps = 82/1290 (6%) Query 694 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 746 KDW + G++ +K + + DG T + + LL+ Sbjct 1543 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1599 Query 747 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 806 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1600 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1658 Query 807 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1659 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1717 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1718 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1777 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1778 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1835 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1952 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1953 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2010 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2011 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2054 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2055 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2114 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2115 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2170 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 1396 R + ++ + F + L FT + + N L+ + Sbjct 2171 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFC----LALKNA 2224 Query 1397 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 1440 F + F K + WF L ++V I+ + + + G Sbjct 2225 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2284 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 1498 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2285 LVTICDFYSKLGVGFTS----HFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2340 Query 1499 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQM 1556 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2341 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2400 Query 1557 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 1616 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2401 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2460 Query 1617 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1676 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2461 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2520 Query 1677 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 1736 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2521 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2578 Query 1737 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 1796 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2579 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVN 2638 Query 1797 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 1855 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2639 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2698 Query 1856 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 1915 + TY K +N+ DLG I A+H+ VAK NI+ IW + F L+ L+ +++ A Sbjct 2699 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKAC 2758 Query 1916 KKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 K L KLT V ++TT +LKGG Sbjct 2759 VKTGLKLKLTFNKQEASVPILTTPFSLKGG 2788 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 17/254 (7%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 274 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 331 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 332 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPK 390 SAGIF SL + V V L +K +D + + K + ++ Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVG 1487 Query 391 EEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDI------NGN 444 +K K + C ++ ++E L ++ L D+ Sbjct 1488 RVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMT 1539 Query 445 LHPDSATLVSDIDI 458 P L++ D+ Sbjct 1540 SLPKDWRLINKFDV 1553 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 48/194 (25%), Positives = 84/194 (43%), Gaps = 6/194 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 A+ L E + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 E+ T +D + + + + E+ D+ + V D Sbjct 929 SEAVEDTIDGVVE--DTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND 986 Query 177 EDNQTTTIQTIVEV 190 +++ T +V Sbjct 987 DEDVVTGDNDDEDV 1000 Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 42/201 (21%), Positives = 72/201 (36%), Gaps = 21/201 (10%) Query 778 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKK 837 D D + + + ++ Y L V D ++S + + Sbjct 1040 SVTGDNDDQIVVTGDDVDDIESIYDFDTYKALLV-------FNDVYNDALFVSYGSSVET 1092 Query 838 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 897 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1093 ETYFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLL 1152 Query 898 AYCNKTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGT 955 K + G V + + + N C CG L G++AV + G Sbjct 1153 TTIPKAIVLPQGGYVADFAYWFLNQFD---INAYANWCCLKCGF-SFDLNGLDAVFFYGD 1208 Query 956 LSYEQFKKGVQIPCTCGKQAT 976 + V C CG T Sbjct 1209 I--------VSHVCKCGHNMT 1221 >sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1 Length=4471 Score = 1230 bits (3182), Expect = 0.0, Method: Composition-based stats. Identities = 364/1290 (28%), Positives = 593/1290 (46%), Gaps = 82/1290 (6%) Query 694 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 746 KDW + G++ +K + + DG T + + LL+ Sbjct 1593 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1649 Query 747 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 806 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1650 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1708 Query 807 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1709 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1767 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1768 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1827 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1828 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1885 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 2002 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 2003 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2060 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2061 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2104 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2105 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2164 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2165 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2220 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 1396 R + ++ + F + L FT + + N L+ + Sbjct 2221 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFC----LALKNA 2274 Query 1397 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 1440 F + F K + WF L ++V I+ + + + G Sbjct 2275 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2334 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 1498 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2335 LVTICDFYSKLGVGFTS----HFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2390 Query 1499 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQM 1556 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2391 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2450 Query 1557 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 1616 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2451 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2510 Query 1617 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1676 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2511 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2570 Query 1677 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 1736 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2571 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2628 Query 1737 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 1796 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2629 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2688 Query 1797 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 1855 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2689 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2748 Query 1856 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 1915 + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ A Sbjct 2749 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKAC 2808 Query 1916 KKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 K L KLT V ++TT +LKGG Sbjct 2809 VKTGLKLKLTFNKQEASVPILTTPFSLKGG 2838 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 66/265 (25%), Positives = 111/265 (42%), Gaps = 18/265 (7%) Query 203 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 262 + E+ G L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A Sbjct 1348 SSFELPQLYG-LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAG 1406 Query 263 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENF 320 E+ + + G +VG V +G L K L++VGP+ + + LL AY++ Sbjct 1407 KKFSKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHL 1466 Query 321 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEK 379 N ++ L+ L+SAGIF SL + V V L +K +D + + K Sbjct 1467 NNYDCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTK 1526 Query 380 QVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYI 439 + ++ +K K + C ++ ++E L ++ L Sbjct 1527 ALAVRLTANVGRVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNN 1578 Query 440 DI------NGNLHPDSATLVSDIDI 458 D+ P L++ D+ Sbjct 1579 DVRDYLLSKMTSLPKDWRLINKFDV 1603 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 48/194 (25%), Positives = 84/194 (43%), Gaps = 6/194 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 A+ L E + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 E+ T +D + + + + E+ D+ + V D Sbjct 929 SEAVEDTIDGVVE--DTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND 986 Query 177 EDNQTTTIQTIVEV 190 +++ T +V Sbjct 987 DEDVVTGDNDDEDV 1000 Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 41/197 (21%), Positives = 72/197 (37%), Gaps = 21/197 (11%) Query 782 DGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYP 841 D D + + + ++ Y L V D ++S + + Y Sbjct 1094 DNDDQIVVTGDDVDDIESIYDFDTYKALLV-------FNDVYNDALFVSYGSSVETETYF 1146 Query 842 QVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCN 901 +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1147 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1206 Query 902 KTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 959 K + G V + + + N C CG L G++A+ + G + Sbjct 1207 KAIVLPQGGFVADFAYWFLNQFD---INAYANWCCLKCGF-SFDLNGLDALFFYGDI--- 1259 Query 960 QFKKGVQIPCTCGKQAT 976 V C CG T Sbjct 1260 -----VSHVCKCGHNMT 1271 >sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1 Length=4421 Score = 1228 bits (3177), Expect = 0.0, Method: Composition-based stats. Identities = 364/1290 (28%), Positives = 592/1290 (46%), Gaps = 82/1290 (6%) Query 694 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 746 KDW + G++ +K + + DG T + + LL+ Sbjct 1543 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1599 Query 747 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 806 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1600 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1658 Query 807 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 866 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1659 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1717 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 926 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1718 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1777 Query 927 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 986 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1778 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1835 Query 987 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1046 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1047 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1103 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1952 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1953 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2010 Query 1163 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 1220 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2011 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2054 Query 1221 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 1279 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2055 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2114 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 1336 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2115 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2170 Query 1337 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 1396 R + ++ + F + L FT + + N L+ + Sbjct 2171 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNLFC----LALKNA 2224 Query 1397 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 1440 F + F K + WF L ++V I+ + + + G Sbjct 2225 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2284 Query 1441 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 1498 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2285 LVTICDFYSKLGVGFTS----HFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2340 Query 1499 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQM 1556 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2341 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2400 Query 1557 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 1616 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2401 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2460 Query 1617 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 1676 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2461 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2520 Query 1677 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 1736 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2521 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2578 Query 1737 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 1796 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2579 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVN 2638 Query 1797 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 1855 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2639 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2698 Query 1856 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 1915 + TY K +N+ DLG I A+H+ VAK NI+ IW + F L+ L+ +++ A Sbjct 2699 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKAC 2758 Query 1916 KKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 K L KLT V ++TT +LKGG Sbjct 2759 VKTGLKLKLTFNKQEASVPILTTPFSLKGG 2788 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 17/254 (7%) Query 214 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 274 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 331 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 332 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPK 390 SAGIF SL + V V L +K +D + + K + ++ Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVG 1487 Query 391 EEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDI------NGN 444 +K K + C ++ ++E L ++ L D+ Sbjct 1488 RVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMT 1539 Query 445 LHPDSATLVSDIDI 458 P L++ D+ Sbjct 1540 SLPKDWRLINKFDV 1553 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 48/194 (25%), Positives = 84/194 (43%), Gaps = 6/194 (3%) Query 1 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 59 A KV F + V+E+ +V + F+LD D +L + CS + VE G V++F VV D Sbjct 809 AGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCD 868 Query 60 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 A+ L E + + L++ + YLFDE+G+ +AS MYC+F D ++ Sbjct 869 AIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVIS 928 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 E+ T +D + + + + E+ D+ + V D Sbjct 929 SEAVEDTIDGVVE--DTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDND 986 Query 177 EDNQTTTIQTIVEV 190 +++ T +V Sbjct 987 DEDVVTGDNDDEDV 1000 Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 42/201 (21%), Positives = 72/201 (36%), Gaps = 21/201 (10%) Query 778 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKK 837 D D + + + ++ Y L V D ++S + + Sbjct 1040 SVTGDNDDQIVVTGDDVDDIESIYDFDTYKALLV-------FNDVYNDALFVSYGSSVET 1092 Query 838 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 897 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1093 ETYFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLL 1152 Query 898 AYCNKTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGT 955 K + G V + + + N C CG L G++AV + G Sbjct 1153 TTIPKAIVLPQGGYVADFAYWFLNQFD---INAYANWCCLKCGF-SFDLNGLDAVFFYGD 1208 Query 956 LSYEQFKKGVQIPCTCGKQAT 976 + V C CG T Sbjct 1209 I--------VSHVCKCGHNMT 1221 >sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 1214 bits (3141), Expect = 0.0, Method: Composition-based stats. Identities = 361/1265 (29%), Positives = 595/1265 (47%), Gaps = 76/1265 (6%) Query 713 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGIFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 L + KW+ + K A+NNC++ + L LQ + L F Q+A+ R+G A Sbjct 1646 MLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLHLTFKIVQWQEAWLEFRSGRPA 1705 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 F AL+LA G+ D R+ + +F +L + CK CG +Q G++AV Sbjct 1706 RFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGLDAV 1764 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFI 1822 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1069 G+ GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1128 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDSLNSKLG 1939 Query 1129 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 1185 + E K+T +P GDVV + Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGCITFGKPVIWLSHEKASLNSLTY 1999 Query 1186 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 1245 ++ + N FDVLK +D + + K E E I+ ++ Sbjct 2000 ----------FNRPLLVDDNKFDVLKVDDVDDSGDSSESGAK----ETKEINIIKLSGVK 2045 Query 1246 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 1304 K +V +I+ + K + + D+ ++ ++ N LSR + + T+ Sbjct 2046 ---KPFKVEDSVIVNDDTSETKYVKSLSIVDVYDMWLTGCKYVVRTANALSRAVNVPTIR 2102 Query 1305 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 1361 G+ V S+P D + KP +N V T C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPAVN--VVKAVRNKTSA----CFNFIKWLFVLLFGW 2155 Query 1362 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 1419 + K T IA + + +F K ++ II I+ L + Sbjct 2156 IKISADN----KVIYTTEIASKLTCKLVALAFKNAFLTFKWSMVARGACIIATIFLLWFN 2211 Query 1420 VCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 1465 ++I+S L + + + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 1466 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 1523 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 1524 GLAAIMQLFFSYFAVHFISN--SWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 1581 +Q+ ++ F+ + W L++ L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELFMLSTLHWSFRLLVALANMLPAHVFMRFYIIIASFIKLFSLFKH 2387 Query 1582 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 1641 V GC+ S C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYK 2447 Query 1642 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 1701 G+TFI+ E A DLS + KRPI PTD + + V V S+ L++D+ GQ+ Y+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNAS 2507 Query 1702 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 1761 FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLITT 2565 Query 1762 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 1821 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQIYKVLDTFLSCARK 2625 Query 1822 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 1880 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKH 2685 Query 1881 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 1940 + VAK ++ IW+V F S + +++ A K L KLT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPF 2745 Query 1941 ALKGG 1945 +LKGG Sbjct 2746 SLKGG 2750 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 109/251 (43%), Gaps = 17/251 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV DI++ +K VK VVVN AN ++ HGGGVA A+ A E+ + + Sbjct 1272 CITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVK 1331 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 332 + G G V +G L K L+VVGP+ + LL+ Y++FN ++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLIS 1391 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + T + V L ++ +D + ++ K++ +++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAARLSFNVGR 1451 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILINDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 446 HPDSATLVSDI 456 P+ +V+ Sbjct 1504 LPEGWRVVNKF 1514 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 45/183 (25%), Positives = 80/183 (44%), Gaps = 5/183 (3%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K + + +ELD + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEE 115 DA+ + L P EL + L + +LFDE+GE A +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFL 970 Query 116 GDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDG 175 + + EE + + T + ++ E+ ++ + S V + Sbjct 971 EESDVEEDDVEGEETDLTITSAGQPCVASEQEESSEVLEDTLDDGPSVETSDSQVEEDVE 1030 Query 176 SED 178 D Sbjct 1031 MSD 1033 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 ++ +V GL K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 899 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 N + + G V + + L + V C C LKG++A+ + G Sbjct 1117 KIPANIVLPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYG-- 1170 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 V C CG+ L+ + PF A + LK F Y+ Sbjct 1171 ------DVVSHICKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRIVYKAA 1216 Query 1017 HYKHITSKETLYCIDG 1032 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus OC43 OX=31631 GN=1a PE=1 SV=1 Length=4383 Score = 1213 bits (3138), Expect = 0.0, Method: Composition-based stats. Identities = 361/1265 (29%), Positives = 595/1265 (47%), Gaps = 76/1265 (6%) Query 713 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 770 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGIFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 771 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 830 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 831 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 890 L + KW+ + K A+NNC++ + L LQ + L F Q+A+ R+G A Sbjct 1646 MLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLHLTFKIVQWQEAWLEFRSGRPA 1705 Query 891 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 950 F AL+LA G+ D R+ + +F +L + CK CG +Q G++AV Sbjct 1706 RFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGLDAV 1764 Query 951 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1010 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFI 1822 Query 1011 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1069 G+ GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1070 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1128 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDSLNSKLG 1939 Query 1129 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 1185 + E K+T +P GDVV + Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGCITFGKPVIWLSHEKASLNSLTY 1999 Query 1186 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 1245 ++ + N FDVLK +D + + K E E I+ ++ Sbjct 2000 ----------FNRPLLVDDNKFDVLKVDDVDDSGDSSESGAK----ETKEINIIKLSGVK 2045 Query 1246 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 1304 K +V +I+ + K + + D+ ++ ++ N LSR + + T+ Sbjct 2046 ---KPFKVEDSVIVNDDTSETKYVKSLSIVDVYDMWLTGCKYVVRTANALSRAVNVPTIR 2102 Query 1305 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 1361 G+ V S+P D + KP +N V T C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPAVN--VVKAVRNKTSA----CFNFIKWLFVLLFGW 2155 Query 1362 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 1419 + K T IA + + +F K ++ II I+ L + Sbjct 2156 IKISADN----KVIYTTEIASKLTCKLVALAFKNAFLTFKWSMVARGACIIATIFLLWFN 2211 Query 1420 VCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 1465 ++I+S L + + + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 1466 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 1523 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 1524 GLAAIMQLFFSYFAVHFISN--SWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 1581 +Q+ ++ F+ + W L++ L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELFMLSTLHWSFRLLVALANMLPAHVFMRFYIIIASFIKLFSLFKH 2387 Query 1582 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 1641 V GC+ S C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYK 2447 Query 1642 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 1701 G+TFI+ E A DLS + KRPI PTD + + V V S+ L++D+ GQ+ Y+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNAS 2507 Query 1702 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 1761 FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLITT 2565 Query 1762 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 1821 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQIYKVLDTFLSCARK 2625 Query 1822 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 1880 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKH 2685 Query 1881 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 1940 + VAK ++ IW+V F S + +++ A K L KLT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPF 2745 Query 1941 ALKGG 1945 +LKGG Sbjct 2746 SLKGG 2750 Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 109/251 (43%), Gaps = 17/251 (7%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 +T NV DI++ +K VK VVVN AN ++ HGGGVA A+ A E+ + + Sbjct 1272 CITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVK 1331 Query 275 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 332 + G G V +G L K L+VVGP+ + LL+ Y++FN ++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLIS 1391 Query 333 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSFLEMKSEKQVEQKIAEIPKE 391 AGIF SL + T + V L ++ +D + ++ K++ +++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAARLSFNVGR 1451 Query 392 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 445 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILINDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 446 HPDSATLVSDI 456 P+ +V+ Sbjct 1504 LPEGWRVVNKF 1514 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 45/183 (25%), Positives = 80/183 (44%), Gaps = 5/183 (3%) Query 1 APTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVA 58 A +VTF + TV E+ K + + +ELD + +LN C + V+ ++ EF VV Sbjct 851 AGRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVI 910 Query 59 DAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEE 115 DA+ + L P EL + L + +LFDE+GE A +YC+F P++D+ Sbjct 911 DAIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFL 970 Query 116 GDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDG 175 + + EE + + T + ++ E+ ++ + S V + Sbjct 971 EESDVEEDDVEGEETDLTITSAGQPCVASEQEESSEVLEDTLDDGPSVETSDSQVEEDVE 1030 Query 176 SED 178 D Sbjct 1031 MSD 1033 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 ++ +V GL K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 899 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 N + + G V + + L + V C C LKG++A+ + G Sbjct 1117 KIPANIVLPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYG-- 1170 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1016 V C CG+ L+ + PF A + LK F Y+ Sbjct 1171 ------DVVSHICKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRIVYKAA 1216 Query 1017 HYKHITSKETLYCIDG 1032 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=rep PE=3 SV=1 Length=6629 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 259/1236 (21%), Positives = 465/1236 (38%), Gaps = 188/1236 (15%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + ++ T D + + V+ + G QFG Y V + + + YV D Sbjct 1176 KQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVYAKNKIV--FTADDVEDKEILYVPTTDK 1232 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 ++ Y+ D Y+ L +KW + ++W D NC++++A++ LQ Sbjct 1233 SIL-----EYYGLDAQKYVIYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQA 1285 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 +++F L +A+ + G+ +F A A C VG+ D ++ L +H + D Sbjct 1286 AKIRFK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTN 1344 Query 928 RVLNV-VCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 985 L V CG + L+G+EA + + + FK TCG T +++ P Sbjct 1345 AFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLP 1404 Query 986 FVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSKETLYCIDGALLTKSSEYK 1042 ++++ A PA + + G+ GH Y D + K Sbjct 1405 YLLLFATDGPATVDCDEDAVGT-VVFVGSTNSGHCYTQA----AGQAFDNLAKDRKFGKK 1459 Query 1043 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1102 P Y ++ K + + N Sbjct 1460 SPYITAMYTRFAFKNETSLPVAKQSKGKSKSVKEDVSNL------------------ATS 1501 Query 1103 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 ASFDN D Q Y LKV PD ++ Y Sbjct 1502 SKASFDNL----------TDFEQW--YDSNIYESLKVQESPD--------NFDKYVSF-- 1539 Query 1163 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 1222 T + + P T +R + S + + F + D Sbjct 1540 ----------------TTKEDSKLPLTLKVRGIKSVVDFRSKDGFIYKLTPDTD------ 1577 Query 1223 CEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVGDIILKPANNSLKITEEVG 1273 PV V++ +++ +E N + + + A N +K+ +++G Sbjct 1578 ENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNYYSKSLHIPTFWENAENFVKMGDKIG 1637 Query 1274 HTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVS 1333 + ++ + KPN L R+ + A G + V + I A +KV Sbjct 1638 GVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGG 1692 Query 1334 TTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRIKASMPTTIAKNT 1384 +T + +C P F TL+ L F +++ + AS T + K Sbjct 1693 GVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVV 1752 Query 1385 VKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSY 1444 + ++ +I+WF+ S ++++ + + L S Sbjct 1753 LATL----------------------LIVWFVYTS---NPVMFTGIRV---LDFLFEGSL 1784 Query 1445 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFG 1504 C Y++ +S + YC C VCL DSL Y +++ A G Sbjct 1785 CGPYKDYGKDS--FDVLRYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKD-----AASG 1837 Query 1505 LVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAM 1562 + W Y++F F V G I Y + + NS ++ + + + + Sbjct 1838 FIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTGVCFLDWF-VQTV 1891 Query 1563 VRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 1617 + F + +Y W Y VH + C TC +C + R+ R E + +V G ++ + Sbjct 1892 FSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVH 1951 Query 1618 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 1677 VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD Sbjct 1952 VYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEAC 2011 Query 1678 VKNGSIHLYFD-KAGQKTYERHSLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESS 1735 + + ++L + K ++ F D L +A K +L I DG C S Sbjct 2012 LVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQS 2071 Query 1736 ------AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 1789 AK+A++YY+Q +C+PIL+LDQAL + P+ Sbjct 2072 AHALEEAKNAAIYYAQYLCKPILILDQAL---------------------YEQLVVEPVS 2110 Query 1790 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 1849 K+++ + L+ +S+D + + + + S + ++ V+ H D++ TG Sbjct 2111 --KSVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVDYTG 2168 Query 1850 DSCNNYMLTY-NKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 1908 D N + +Y +TPRD G I+ A N +V + ++W + + LS+ Sbjct 2169 DGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAP--PVVWKFSELIKLSDSCL 2226 Query 1909 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 K + SA K+ + F +T + +QV+ T K+ ++ Sbjct 2227 KYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEK 2262 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 119/327 (36%), Gaps = 29/327 (9%) Query 108 PPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDS- 166 P + E+ Q E D A + EE +E L Sbjct 910 PVENSTGSSKTMTEQVVVEDQELPVVEQDQDVVVYTPTDLEVAKETAEEVDEFILIFAVP 969 Query 167 -QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV---QTIEVNSFSGYLKLTDNVYI 222 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 970 KEEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTV 1025 Query 223 KNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVG 282 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1026 VIAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ-- 1080 Query 283 GSCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGAD 339 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 -RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD 1139 Query 340 ---PIHSLRVCVDTVRTNVYLAVFDKNLYDKL------VSSFL--EMKSEKQVEQKIAEI 388 I ++R + V L + D + +L + + + K + Sbjct 1140 FKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGDS 1199 Query 389 PKEEVKPFITESKPSVEQRKQDDKKIK 415 + + + +D + + Sbjct 1200 LGQFGQVYAKNKIVFTADDVEDKEILY 1226 Score = 37.1 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (6%) Query 2 PTKVTFGDDTVIEV--QGYKSVNITFELD-ERIDKVLNEKCS-AYTVELGTEVNEFACVV 57 VTFG+ TV E+ + ++ E E + + + V+ V + V+ Sbjct 674 GKTVTFGETTVQEIPPPDVVPIKVSIECCGEPWNTIFKKAYKEPIEVDTDLTVEQLLSVI 733 Query 58 ADAVIKTL 65 + + L Sbjct 734 YEKMCDDL 741 >sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 SV=1 Length=6629 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 259/1236 (21%), Positives = 465/1236 (38%), Gaps = 188/1236 (15%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + ++ T D + + V+ + G QFG Y V + + + YV D Sbjct 1176 KQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVYAKNKIV--FTADDVEDKEILYVPTTDK 1232 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 ++ Y+ D Y+ L +KW + ++W D NC++++A++ LQ Sbjct 1233 SIL-----EYYGLDAQKYVIYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQA 1285 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 +++F L +A+ + G+ +F A A C VG+ D ++ L +H + D Sbjct 1286 AKIRFK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTN 1344 Query 928 RVLNV-VCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 985 L V CG + L+G+EA + + + FK TCG T +++ P Sbjct 1345 AFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLP 1404 Query 986 FVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSKETLYCIDGALLTKSSEYK 1042 ++++ A PA + + G+ GH Y D + K Sbjct 1405 YLLLFATDGPATVDCDEDAVGT-VVFVGSTNSGHCYTQA----AGQAFDNLAKDRKFGKK 1459 Query 1043 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1102 P Y ++ K + + N Sbjct 1460 SPYITAMYTRFAFKNETSLPVAKQSKGKSKSVKEDVSNL------------------ATS 1501 Query 1103 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 ASFDN D Q Y LKV PD ++ Y Sbjct 1502 SKASFDNL----------TDFEQW--YDSNIYESLKVQESPD--------NFDKYVSF-- 1539 Query 1163 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 1222 T + + P T +R + S + + F + D Sbjct 1540 ----------------TTKEDSKLPLTLKVRGIKSVVDFRSKDGFIYKLTPDTD------ 1577 Query 1223 CEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVGDIILKPANNSLKITEEVG 1273 PV V++ +++ +E N + + + A N +K+ +++G Sbjct 1578 ENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNYYSKSLHIPTFWENAENFVKMGDKIG 1637 Query 1274 HTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVS 1333 + ++ + KPN L R+ + A G + V + I A +KV Sbjct 1638 GVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGG 1692 Query 1334 TTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRIKASMPTTIAKNT 1384 +T + +C P F TL+ L F +++ + AS T + K Sbjct 1693 GVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVV 1752 Query 1385 VKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSY 1444 + ++ +I+WF+ S ++++ + + L S Sbjct 1753 LATL----------------------LIVWFVYTS---NPVMFTGIRV---LDFLFEGSL 1784 Query 1445 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFG 1504 C Y++ +S + YC C VCL DSL Y +++ A G Sbjct 1785 CGPYKDYGKDS--FDVLRYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKD-----AASG 1837 Query 1505 LVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAM 1562 + W Y++F F V G I Y + + NS ++ + + + + Sbjct 1838 FIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTGVCFLDWF-VQTV 1891 Query 1563 VRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 1617 + F + +Y W Y VH + C TC +C + R+ R E + +V G ++ + Sbjct 1892 FSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVH 1951 Query 1618 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 1677 VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD Sbjct 1952 VYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEAC 2011 Query 1678 VKNGSIHLYFD-KAGQKTYERHSLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESS 1735 + + ++L + K ++ F D L +A K +L I DG C S Sbjct 2012 LVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQS 2071 Query 1736 ------AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 1789 AK+A++YY+Q +C+PIL+LDQAL + P+ Sbjct 2072 AHALEEAKNAAIYYAQYLCKPILILDQAL---------------------YEQLVVEPVS 2110 Query 1790 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 1849 K+++ + L+ +S+D + + + + S + ++ V+ H D++ TG Sbjct 2111 --KSVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVDYTG 2168 Query 1850 DSCNNYMLTY-NKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 1908 D N + +Y +TPRD G I+ A N +V + ++W + + LS+ Sbjct 2169 DGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAP--PVVWKFSELIKLSDSCL 2226 Query 1909 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 K + SA K+ + F +T + +QV+ T K+ ++ Sbjct 2227 KYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEK 2262 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 119/327 (36%), Gaps = 29/327 (9%) Query 108 PPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDS- 166 P + E+ Q E D A + EE +E L Sbjct 910 PVENSTGSSKTMTEQVVVEDQELPVVEQDQDVVVYTPTDLEVAKETAEEVDEFILIFAVP 969 Query 167 -QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV---QTIEVNSFSGYLKLTDNVYI 222 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 970 KEEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTV 1025 Query 223 KNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVG 282 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1026 VIAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ-- 1080 Query 283 GSCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGAD 339 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 -RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD 1139 Query 340 ---PIHSLRVCVDTVRTNVYLAVFDKNLYDKL------VSSFL--EMKSEKQVEQKIAEI 388 I ++R + V L + D + +L + + + K + Sbjct 1140 FKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGDS 1199 Query 389 PKEEVKPFITESKPSVEQRKQDDKKIK 415 + + + +D + + Sbjct 1200 LGQFGQVYAKNKIVFTADDVEDKEILY 1226 Score = 37.1 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (6%) Query 2 PTKVTFGDDTVIEV--QGYKSVNITFELD-ERIDKVLNEKCS-AYTVELGTEVNEFACVV 57 VTFG+ TV E+ + ++ E E + + + V+ V + V+ Sbjct 674 GKTVTFGETTVQEIPPPDVVPIKVSIECCGEPWNTIFKKAYKEPIEVDTDLTVEQLLSVI 733 Query 58 ADAVIKTL 65 + + L Sbjct 734 YEKMCDDL 741 >sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=1a PE=3 SV=1 Length=3951 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 259/1236 (21%), Positives = 465/1236 (38%), Gaps = 188/1236 (15%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + ++ T D + + V+ + G QFG Y V + + + YV D Sbjct 1176 KQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVYAKNKIV--FTADDVEDKEILYVPTTDK 1232 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 ++ Y+ D Y+ L +KW + ++W D NC++++A++ LQ Sbjct 1233 SIL-----EYYGLDAQKYVIYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQA 1285 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 +++F L +A+ + G+ +F A A C VG+ D ++ L +H + D Sbjct 1286 AKIRFK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTN 1344 Query 928 RVLNV-VCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 985 L V CG + L+G+EA + + + FK TCG T +++ P Sbjct 1345 AFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLP 1404 Query 986 FVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSKETLYCIDGALLTKSSEYK 1042 ++++ A PA + + G+ GH Y D + K Sbjct 1405 YLLLFATDGPATVDCDEDAVGT-VVFVGSTNSGHCYTQA----AGQAFDNLAKDRKFGKK 1459 Query 1043 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1102 P Y ++ K + + N Sbjct 1460 SPYITAMYTRFAFKNETSLPVAKQSKGKSKSVKEDVSNL------------------ATS 1501 Query 1103 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 ASFDN D Q Y LKV PD ++ Y Sbjct 1502 SKASFDNL----------TDFEQW--YDSNIYESLKVQESPD--------NFDKYVSF-- 1539 Query 1163 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 1222 T + + P T +R + S + + F + D Sbjct 1540 ----------------TTKEDSKLPLTLKVRGIKSVVDFRSKDGFIYKLTPDTD------ 1577 Query 1223 CEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVGDIILKPANNSLKITEEVG 1273 PV V++ +++ +E N + + + A N +K+ +++G Sbjct 1578 ENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNYYSKSLHIPTFWENAENFVKMGDKIG 1637 Query 1274 HTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVS 1333 + ++ + KPN L R+ + A G + V + I A +KV Sbjct 1638 GVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGG 1692 Query 1334 TTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRIKASMPTTIAKNT 1384 +T + +C P F TL+ L F +++ + AS T + K Sbjct 1693 GVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVV 1752 Query 1385 VKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSY 1444 + ++ +I+WF+ S ++++ + + L S Sbjct 1753 LATL----------------------LIVWFVYTS---NPVMFTGIRV---LDFLFEGSL 1784 Query 1445 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFG 1504 C Y++ +S + YC C VCL DSL Y +++ A G Sbjct 1785 CGPYKDYGKDS--FDVLRYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKD-----AASG 1837 Query 1505 LVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAM 1562 + W Y++F F V G I Y + + NS ++ + + + + Sbjct 1838 FIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTGVCFLDWF-VQTV 1891 Query 1563 VRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 1617 + F + +Y W Y VH + C TC +C + R+ R E + +V G ++ + Sbjct 1892 FSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVH 1951 Query 1618 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 1677 VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD Sbjct 1952 VYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEAC 2011 Query 1678 VKNGSIHLYFD-KAGQKTYERHSLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESS 1735 + + ++L + K ++ F D L +A K +L I DG C S Sbjct 2012 LVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQS 2071 Query 1736 ------AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 1789 AK+A++YY+Q +C+PIL+LDQAL + P+ Sbjct 2072 AHALEEAKNAAIYYAQYLCKPILILDQAL---------------------YEQLVVEPVS 2110 Query 1790 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 1849 K+++ + L+ +S+D + + + + S + ++ V+ H D++ TG Sbjct 2111 --KSVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVDYTG 2168 Query 1850 DSCNNYMLTY-NKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 1908 D N + +Y +TPRD G I+ A N +V + ++W + + LS+ Sbjct 2169 DGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAP--PVVWKFSELIKLSDSCL 2226 Query 1909 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 K + SA K+ + F +T + +QV+ T K+ ++ Sbjct 2227 KYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEK 2262 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 119/327 (36%), Gaps = 29/327 (9%) Query 108 PPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDS- 166 P + E+ Q E D A + EE +E L Sbjct 910 PVENSTGSSKTMTEQVVVEDQELPVVEQDQDVVVYTPTDLEVAKETAEEVDEFILIFAVP 969 Query 167 -QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV---QTIEVNSFSGYLKLTDNVYI 222 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 970 KEEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTV 1025 Query 223 KNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVG 282 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1026 VIAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ-- 1080 Query 283 GSCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGAD 339 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 -RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD 1139 Query 340 ---PIHSLRVCVDTVRTNVYLAVFDKNLYDKL------VSSFL--EMKSEKQVEQKIAEI 388 I ++R + V L + D + +L + + + K + Sbjct 1140 FKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGDS 1199 Query 389 PKEEVKPFITESKPSVEQRKQDDKKIK 415 + + + +D + + Sbjct 1200 LGQFGQVYAKNKIVFTADDVEDKEILY 1226 Score = 37.1 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (6%) Query 2 PTKVTFGDDTVIEV--QGYKSVNITFELD-ERIDKVLNEKCS-AYTVELGTEVNEFACVV 57 VTFG+ TV E+ + ++ E E + + + V+ V + V+ Sbjct 674 GKTVTFGETTVQEIPPPDVVPIKVSIECCGEPWNTIFKKAYKEPIEVDTDLTVEQLLSVI 733 Query 58 ADAVIKTL 65 + + L Sbjct 734 YEKMCDDL 741 >sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=1a PE=1 SV=1 Length=3951 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 259/1236 (21%), Positives = 465/1236 (38%), Gaps = 188/1236 (15%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + ++ T D + + V+ + G QFG Y V + + + YV D Sbjct 1176 KQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVYAKNKIV--FTADDVEDKEILYVPTTDK 1232 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 ++ Y+ D Y+ L +KW + ++W D NC++++A++ LQ Sbjct 1233 SIL-----EYYGLDAQKYVIYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQA 1285 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 +++F L +A+ + G+ +F A A C VG+ D ++ L +H + D Sbjct 1286 AKIRFK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTN 1344 Query 928 RVLNV-VCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 985 L V CG + L+G+EA + + + FK TCG T +++ P Sbjct 1345 AFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLP 1404 Query 986 FVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSKETLYCIDGALLTKSSEYK 1042 ++++ A PA + + G+ GH Y D + K Sbjct 1405 YLLLFATDGPATVDCDEDAVGT-VVFVGSTNSGHCYTQA----AGQAFDNLAKDRKFGKK 1459 Query 1043 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1102 P Y ++ K + + N Sbjct 1460 SPYITAMYTRFAFKNETSLPVAKQSKGKSKSVKEDVSNL------------------ATS 1501 Query 1103 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 ASFDN D Q Y LKV PD ++ Y Sbjct 1502 SKASFDNL----------TDFEQW--YDSNIYESLKVQESPD--------NFDKYVSF-- 1539 Query 1163 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 1222 T + + P T +R + S + + F + D Sbjct 1540 ----------------TTKEDSKLPLTLKVRGIKSVVDFRSKDGFIYKLTPDTD------ 1577 Query 1223 CEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVGDIILKPANNSLKITEEVG 1273 PV V++ +++ +E N + + + A N +K+ +++G Sbjct 1578 ENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNYYSKSLHIPTFWENAENFVKMGDKIG 1637 Query 1274 HTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVS 1333 + ++ + KPN L R+ + A G + V + I A +KV Sbjct 1638 GVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGG 1692 Query 1334 TTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRIKASMPTTIAKNT 1384 +T + +C P F TL+ L F +++ + AS T + K Sbjct 1693 GVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVV 1752 Query 1385 VKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSY 1444 + ++ +I+WF+ S ++++ + + L S Sbjct 1753 LATL----------------------LIVWFVYTS---NPVMFTGIRV---LDFLFEGSL 1784 Query 1445 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFG 1504 C Y++ +S + YC C VCL DSL Y +++ A G Sbjct 1785 CGPYKDYGKDS--FDVLRYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKD-----AASG 1837 Query 1505 LVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAM 1562 + W Y++F F V G I Y + + NS ++ + + + + Sbjct 1838 FIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTGVCFLDWF-VQTV 1891 Query 1563 VRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 1617 + F + +Y W Y VH + C TC +C + R+ R E + +V G ++ + Sbjct 1892 FSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVH 1951 Query 1618 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 1677 VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD Sbjct 1952 VYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEAC 2011 Query 1678 VKNGSIHLYFD-KAGQKTYERHSLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESS 1735 + + ++L + K ++ F D L +A K +L I DG C S Sbjct 2012 LVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQS 2071 Query 1736 ------AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 1789 AK+A++YY+Q +C+PIL+LDQAL + P+ Sbjct 2072 AHALEEAKNAAIYYAQYLCKPILILDQAL---------------------YEQLVVEPVS 2110 Query 1790 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 1849 K+++ + L+ +S+D + + + + S + ++ V+ H D++ TG Sbjct 2111 --KSVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVDYTG 2168 Query 1850 DSCNNYMLTY-NKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 1908 D N + +Y +TPRD G I+ A N +V + ++W + + LS+ Sbjct 2169 DGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAP--PVVWKFSELIKLSDSCL 2226 Query 1909 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 K + SA K+ + F +T + +QV+ T K+ ++ Sbjct 2227 KYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEK 2262 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 119/327 (36%), Gaps = 29/327 (9%) Query 108 PPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDS- 166 P + E+ Q E D A + EE +E L Sbjct 910 PVENSTGSSKTMTEQVVVEDQELPVVEQDQDVVVYTPTDLEVAKETAEEVDEFILIFAVP 969 Query 167 -QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV---QTIEVNSFSGYLKLTDNVYI 222 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 970 KEEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTV 1025 Query 223 KNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVG 282 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1026 VIAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ-- 1080 Query 283 GSCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGAD 339 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 -RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD 1139 Query 340 ---PIHSLRVCVDTVRTNVYLAVFDKNLYDKL------VSSFL--EMKSEKQVEQKIAEI 388 I ++R + V L + D + +L + + + K + Sbjct 1140 FKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGDS 1199 Query 389 PKEEVKPFITESKPSVEQRKQDDKKIK 415 + + + +D + + Sbjct 1200 LGQFGQVYAKNKIVFTADDVEDKEILY 1226 Score = 37.1 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (6%) Query 2 PTKVTFGDDTVIEV--QGYKSVNITFELD-ERIDKVLNEKCS-AYTVELGTEVNEFACVV 57 VTFG+ TV E+ + ++ E E + + + V+ V + V+ Sbjct 674 GKTVTFGETTVQEIPPPDVVPIKVSIECCGEPWNTIFKKAYKEPIEVDTDLTVEQLLSVI 733 Query 58 ADAVIKTL 65 + + L Sbjct 734 YEKMCDDL 741 >sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1 Length=6631 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 255/1236 (21%), Positives = 467/1236 (38%), Gaps = 188/1236 (15%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + ++ T D + + V+ + G QFG + V + E K +P D Sbjct 1178 KQKTIYLTEDGVKYRSVVLKPGDSLG-QFGQVFARNKVV---FSADDVEDKEILFIPTTD 1233 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 +E Y+ D Y+ L +KW + ++W D NC++++A++ LQ Sbjct 1234 KTILE----YYGLDAQKYVTYLQTL--AQKWDVQYRDNFVILEWRDGNCWISSAIVLLQA 1287 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 +++F L +A+ + G+ +F A A CN VG+ D ++ L +H + D Sbjct 1288 AKIRFK-GFLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLANLAEHFDADYTN 1346 Query 928 RVLN-VVCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 985 +L V CG + L+G+EA + + + FK TCG +T +++ P Sbjct 1347 ALLKKCVSCNCGVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPTCGASSTDEVIEASLP 1406 Query 986 FVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSKETLYCIDGALLTKSSEYK 1042 ++++ A PA + + G+ GH Y K D + K Sbjct 1407 YLLLFATDGPATVDCDENAVGT-VVFIGSTNSGHCYTQADGKA----FDNLAKDRKFGRK 1461 Query 1043 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1102 P Y S + + + + + N Sbjct 1462 SPYITAMYTRFSLRSENPLLVVEHSKGKAKVVKEDVSNL------------------ATS 1503 Query 1103 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 ASFD+ D Q Y LKV PD + Y Sbjct 1504 SKASFDDL----------TDFEQW--YDSNIYESLKVQETPD--------NLDEYVSF-- 1541 Query 1163 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 1222 T + + P T +R + S + + F + D Sbjct 1542 ----------------TTKEDSKLPLTLKVRGIKSVVDFRSKDGFTYKLTPDTD------ 1579 Query 1223 CEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVGDIILKPANNSLKITEEVG 1273 PV V+++ +++ +E + + + + A + +K+ ++ Sbjct 1580 ENSKTPVYYPVLDSISLRAIWVEGSANFVVGHPNYYSKSLRIPTFWENAESFVKMGYKID 1639 Query 1274 HTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVS 1333 + ++ + KPN L R+ + A G + V + + A +KV Sbjct 1640 GVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKILVKAATYVADKVGD 1694 Query 1334 TTTNIVTRCLNRVC---------TNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNT 1384 +T + +C + + TL+ F ++++ + +S + K Sbjct 1695 GVVRNITDRIKGLCGFTRGHFEKKMSLQFLKTLVFFFFYFLKASSKSLVSSYKIVLCKVV 1754 Query 1385 VKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSY 1444 ++ +I+WF+ S ++++ + + L S Sbjct 1755 FATL----------------------LIVWFIYTS---NPVVFTGIRV---LDFLFEGSL 1786 Query 1445 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFG 1504 C Y + +S + YC G C VCL DSL Y +++ A G Sbjct 1787 CGPYNDYGKDS--FDVLRYCAGDFTCRVCLHDRDSLHLYKHAYSVEQIYKD-----AASG 1839 Query 1505 LVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAM 1562 + W Y++F F V G I Y + + +S ++ + + + + Sbjct 1840 INFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLSSTVLQTGVGFLDWF-VKTV 1893 Query 1563 VRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 1617 + F + +Y W Y VH + C TC +C + R+ R E + +V G ++ + Sbjct 1894 FTHFNFMGAGFYFWLFYKIYVQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVH 1953 Query 1618 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 1677 VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++V Sbjct 1954 VYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEAC 2013 Query 1678 VKNGSIHLYFDKA-GQKTYERHSLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESS 1735 V + ++L + A K ++ F D L +A K +L I DG C S Sbjct 2014 VVDDFVNLKYKAAIPGKDNASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQS 2073 Query 1736 ------AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 1789 AK+A+VYY+Q +C+PIL+LDQAL + P+ Sbjct 2074 AHALEEAKNAAVYYAQYLCKPILILDQAL---------------------YEQLIVEPVS 2112 Query 1790 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 1849 K+++ + L+ +S+D + + + + S + ++ V+ H ++E TG Sbjct 2113 --KSVIDKVCSILSNIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHEVEYTG 2170 Query 1850 DSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 1908 D N + +Y + +TPRD G I+ A N +V + ++W D + LS+ Sbjct 2171 DGFTNVIPSYGMDTDKLTPRDRGFLINADASIANLRVKNAP--PVVWKFSDLIKLSDSCL 2228 Query 1909 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 K + SA K+ F +T + +QV++ T K+ ++ Sbjct 2229 KYLISATVKSGGRFFITKSGAKQVISCHTQKLLVEK 2264 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 55/262 (21%), Positives = 98/262 (37%), Gaps = 15/262 (6%) Query 116 GDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDG 175 D E+ Q + Q + A ++ E+ ++++ + Sbjct 918 CDAMAEQAIVEEQEIVPVVEQSQDVVVFTPADLEVVKETAEEVDEFILISAVPKEEVVSQ 977 Query 176 SEDNQTTTIQTIVEVQPQLEMELTPVV---QTIEVNSFSGYLKLTDNVYIKNADIVEEAK 232 ++ + + V+ Q E + T E F Y ++ + A ++E K Sbjct 978 EKEEPQVEQEPTLVVKAQREKKAKKFKVKPATCEKPKFLEYKTCVGDLAVVIAKALDEFK 1037 Query 233 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL 292 + +VNAAN ++ HGGGVA A+ DY+ +GP + V Sbjct 1038 EF---CIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFVK 1091 Query 293 AKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGAD---PIHSLRV 346 C+ +VVGP + L +AY++ V+ + P+LS+GIFG D I ++R Sbjct 1092 GIQCVNNVVGPRHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGVDFKISIDAMRE 1151 Query 347 CVDTVRTNVYLAVFDKNLYDKL 368 V L + D Sbjct 1152 AFKGCAIRVLLFSLSQEHIDYF 1173 Score = 37.5 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 4/68 (6%) Query 2 PTKVTFGDDTVIEV--QGYKSVNITFELD-ERIDKVLNEKCS-AYTVELGTEVNEFACVV 57 VTFG+ TV E+ + ++ E E + + + VE V + VV Sbjct 674 GKTVTFGETTVQEIPPPDVVFIKVSIECCGEPWNTIFKKAYKEPIEVETDLTVEQLLSVV 733 Query 58 ADAVIKTL 65 + + L Sbjct 734 YEKMCDDL 741 >sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=1a PE=1 SV=1 Length=3953 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 255/1236 (21%), Positives = 467/1236 (38%), Gaps = 188/1236 (15%) Query 748 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 807 + ++ T D + + V+ + G QFG + V + E K +P D Sbjct 1178 KQKTIYLTEDGVKYRSVVLKPGDSLG-QFGQVFARNKVV---FSADDVEDKEILFIPTTD 1233 Query 808 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 867 +E Y+ D Y+ L +KW + ++W D NC++++A++ LQ Sbjct 1234 KTILE----YYGLDAQKYVTYLQTL--AQKWDVQYRDNFVILEWRDGNCWISSAIVLLQA 1287 Query 868 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 927 +++F L +A+ + G+ +F A A CN VG+ D ++ L +H + D Sbjct 1288 AKIRFK-GFLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLANLAEHFDADYTN 1346 Query 928 RVLN-VVCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 985 +L V CG + L+G+EA + + + FK TCG +T +++ P Sbjct 1347 ALLKKCVSCNCGVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPTCGASSTDEVIEASLP 1406 Query 986 FVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSKETLYCIDGALLTKSSEYK 1042 ++++ A PA + + G+ GH Y K D + K Sbjct 1407 YLLLFATDGPATVDCDENAVGT-VVFIGSTNSGHCYTQADGKA----FDNLAKDRKFGRK 1461 Query 1043 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1102 P Y S + + + + + N Sbjct 1462 SPYITAMYTRFSLRSENPLLVVEHSKGKAKVVKEDVSNL------------------ATS 1503 Query 1103 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1162 ASFD+ D Q Y LKV PD + Y Sbjct 1504 SKASFDDL----------TDFEQW--YDSNIYESLKVQETPD--------NLDEYVSF-- 1541 Query 1163 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 1222 T + + P T +R + S + + F + D Sbjct 1542 ----------------TTKEDSKLPLTLKVRGIKSVVDFRSKDGFTYKLTPDTD------ 1579 Query 1223 CEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVGDIILKPANNSLKITEEVG 1273 PV V+++ +++ +E + + + + A + +K+ ++ Sbjct 1580 ENSKTPVYYPVLDSISLRAIWVEGSANFVVGHPNYYSKSLRIPTFWENAESFVKMGYKID 1639 Query 1274 HTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVS 1333 + ++ + KPN L R+ + A G + V + + A +KV Sbjct 1640 GVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKILVKAATYVADKVGD 1694 Query 1334 TTTNIVTRCLNRVC---------TNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNT 1384 +T + +C + + TL+ F ++++ + +S + K Sbjct 1695 GVVRNITDRIKGLCGFTRGHFEKKMSLQFLKTLVFFFFYFLKASSKSLVSSYKIVLCKVV 1754 Query 1385 VKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSY 1444 ++ +I+WF+ S ++++ + + L S Sbjct 1755 FATL----------------------LIVWFIYTS---NPVVFTGIRV---LDFLFEGSL 1786 Query 1445 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFG 1504 C Y + +S + YC G C VCL DSL Y +++ A G Sbjct 1787 CGPYNDYGKDS--FDVLRYCAGDFTCRVCLHDRDSLHLYKHAYSVEQIYKD-----AASG 1839 Query 1505 LVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAM 1562 + W Y++F F V G I Y + + +S ++ + + + + Sbjct 1840 INFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLSSTVLQTGVGFLDWF-VKTV 1893 Query 1563 VRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 1617 + F + +Y W Y VH + C TC +C + R+ R E + +V G ++ + Sbjct 1894 FTHFNFMGAGFYFWLFYKIYVQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVH 1953 Query 1618 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 1677 VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++V Sbjct 1954 VYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEAC 2013 Query 1678 VKNGSIHLYFDKA-GQKTYERHSLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESS 1735 V + ++L + A K ++ F D L +A K +L I DG C S Sbjct 2014 VVDDFVNLKYKAAIPGKDNASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQS 2073 Query 1736 ------AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 1789 AK+A+VYY+Q +C+PIL+LDQAL + P+ Sbjct 2074 AHALEEAKNAAVYYAQYLCKPILILDQAL---------------------YEQLIVEPVS 2112 Query 1790 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 1849 K+++ + L+ +S+D + + + + S + ++ V+ H ++E TG Sbjct 2113 --KSVIDKVCSILSNIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHEVEYTG 2170 Query 1850 DSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 1908 D N + +Y + +TPRD G I+ A N +V + ++W D + LS+ Sbjct 2171 DGFTNVIPSYGMDTDKLTPRDRGFLINADASIANLRVKNAP--PVVWKFSDLIKLSDSCL 2228 Query 1909 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKG 1944 K + SA K+ F +T + +QV++ T K+ ++ Sbjct 2229 KYLISATVKSGGRFFITKSGAKQVISCHTQKLLVEK 2264 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 55/262 (21%), Positives = 98/262 (37%), Gaps = 15/262 (6%) Query 116 GDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDG 175 D E+ Q + Q + A ++ E+ ++++ + Sbjct 918 CDAMAEQAIVEEQEIVPVVEQSQDVVVFTPADLEVVKETAEEVDEFILISAVPKEEVVSQ 977 Query 176 SEDNQTTTIQTIVEVQPQLEMELTPVV---QTIEVNSFSGYLKLTDNVYIKNADIVEEAK 232 ++ + + V+ Q E + T E F Y ++ + A ++E K Sbjct 978 EKEEPQVEQEPTLVVKAQREKKAKKFKVKPATCEKPKFLEYKTCVGDLAVVIAKALDEFK 1037 Query 233 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL 292 + +VNAAN ++ HGGGVA A+ DY+ +GP + V Sbjct 1038 EF---CIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFVK 1091 Query 293 AKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGAD---PIHSLRV 346 C+ +VVGP + L +AY++ V+ + P+LS+GIFG D I ++R Sbjct 1092 GIQCVNNVVGPRHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGVDFKISIDAMRE 1151 Query 347 CVDTVRTNVYLAVFDKNLYDKL 368 V L + D Sbjct 1152 AFKGCAIRVLLFSLSQEHIDYF 1173 Score = 37.5 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 4/68 (6%) Query 2 PTKVTFGDDTVIEV--QGYKSVNITFELD-ERIDKVLNEKCS-AYTVELGTEVNEFACVV 57 VTFG+ TV E+ + ++ E E + + + VE V + VV Sbjct 674 GKTVTFGETTVQEIPPPDVVFIKVSIECCGEPWNTIFKKAYKEPIEVETDLTVEQLLSVV 733 Query 58 ADAVIKTL 65 + + L Sbjct 734 YEKMCDDL 741 >sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 512/2005 OX=693999 GN=1a PE=3 SV=1 Length=4128 Score = 574 bits (1478), Expect = 4e-167, Method: Composition-based stats. Identities = 193/780 (25%), Positives = 328/780 (42%), Gaps = 79/780 (10%) Query 1182 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 1241 +T T + + ST V S VLK G+D+ C P+ + VV Sbjct 1814 TSTTCDGTCSTKRVVSTPVVNAS----VLKV----GLDDGNCVHGLPLVDRVVSVNGTVI 1865 Query 1242 DVLECNVKTTEVVG-DIILKPANNSLKITEEVGHTDLMAAYVDNSSLT----IKKPNELS 1296 + VV + +L + + + + L + KP +L+ Sbjct 1866 ITNVGDTPGKPVVATENLLLDGVSYTVFQDSTTGVGHYTVFDKEAKLMFDGDVLKPCDLN 1925 Query 1297 RVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVT--RCLNRVCTNYMPYF 1354 + + V P + A FL+ + + T ++R + Y Sbjct 1926 VSPVTSVVVCNNKKIVVQDPVKRVELDASKFLDTMNVASEKFFTFGDFVSRNIIVLIVYL 1985 Query 1355 FTLLLQLCTFTRSTNSRIKASMP---TTIAKNTVK---SVGKFCLEASFNYLKSPNFSKL 1408 F+LL + + ++ A +P I K +VK KF F Y+K Sbjct 1986 FSLLAICFRALKKRDMKVMAGVPERTGIILKRSVKYNYKALKFFFRLKFQYIKV------ 2039 Query 1409 INIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSI 1468 FL S+ L +L Y+ + + + +G P C Y +GY NST YC + Sbjct 2040 ------FLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYCGN-V 2089 Query 1469 PCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAI 1528 C +CL G + L + I + L L + + I+F FF +G+ Sbjct 2090 LCKICLYGYEELSDFTHTRVIWQHLKDP---LIGNILPLFYLVFLIIFGGFFVRIGITYF 2146 Query 1529 MQLFFSY--FAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGC 1586 + + + A+ + N WL+ L+ P ++M + + + HV+ GC Sbjct 2147 IMQYINAAGVALGYQDNVWLLHLL-------PFNSMGNIIVVAFIVTRILLFLKHVLFGC 2199 Query 1587 NSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTF 1646 + +C+ C K + TRV TI+ GV +SFYV ANGGK FCK HN+ CV+CD++ G TF Sbjct 2200 DKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTF 2259 Query 1647 ISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNL 1706 I+D +A +LS K + PT ++ I+D V NG +LY K + + + Sbjct 2260 INDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACK 2319 Query 1707 DNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSA 1766 D L+ N + + +VF S + K+A VY+SQL+C+PI L+D AL++ + Sbjct 2320 DVLKNCN----ILTDFVVF-NNSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASLN--V 2372 Query 1767 EVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDS 1826 + + + A+V S++F + + + R+ S Sbjct 2373 DFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLGLS 2410 Query 1827 DVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPRDLGACIDCSARHINAQV 1885 DV ++ + +H+ D+ ++ S NN +++Y K E + D+ C+ A+ +N V Sbjct 2411 DVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNV 2470 Query 1886 AKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 N+ ++W KDF++LSE+ RK I K + F LT R + + T +A K G Sbjct 2471 LTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKG 2530 Score = 237 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 88/404 (22%), Positives = 141/404 (35%), Gaps = 45/404 (11%) Query 708 EFLKRGDKSVYYTSNPTTF------HLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINL 761 +FLK + + + F + G V + +L E + ++V T D + Sbjct 1596 KFLKLKGSLLVVVEDSSVFNKISHASVAGYVAKPALVD---TLFEAKPVQVVVTQDQRSF 1652 Query 762 HTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTD 821 HT + S TYGQQ G ++ VT +KP + + V+PN V+ ++Y D Sbjct 1653 HTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDK--VVSVVPN-----VDWDKHYGFVD 1705 Query 822 PSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA 880 L+HT + VNG ++ +DNNC++ L LQ KF P LQ Sbjct 1706 AGI----FHTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAVCLQLQFANAKFKPKGLQQL 1761 Query 881 YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQ 940 + G+ A F + GE D T++ + + +L TC Sbjct 1762 WESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFLKPQGSVEMLRATSTTCDGT 1821 Query 941 QTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM--MSAPP----- 993 +T + V + ++ G C G +V ++ + P Sbjct 1822 CSTKRVVSTPVVNASVLKVGLDDG---NCVHGLPLVDRVVSVNGTVIITNVGDTPGKPVV 1878 Query 994 --AQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYK 1051 L ++T + T GHY + KE DG +L P+T V Sbjct 1879 ATENLLLDGVSYTVFQDST--TGVGHYT-VFDKEAKLMFDGDVLKPCDLNVSPVTSVVVC 1935 Query 1052 ENSYTTTIKPVTYKLDGVVCTEIDPK--LDNYYKKDNSYFTEQP 1093 N PV E+D LD +FT Sbjct 1936 NNKKIVVQDPV-------KRVELDASKFLDTMNVASEKFFTFGD 1972 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 73/265 (28%), Positives = 108/265 (41%), Gaps = 19/265 (7%) Query 175 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 234 G + TI T+ E+ + +V F Y N+ ++ V Sbjct 1268 GRHPIKFNTINTLCYKDVDWEVS----NGSCDVKPFLTYK----NIEFYQGELSALLS-V 1318 Query 235 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 294 VVNAAN L HGGG+A AL+ T +QV S+ Y++ NG +KVG ++ Sbjct 1319 NHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE--H 1376 Query 295 HCLHVVGPNVNKGEDIQLLKSAYE-NFNQHEVLLAPLLSAGIFGADPIHSLR---VCVDT 350 L+VVGP K +LL AY F Q V L PLLS GIF SL CV Sbjct 1377 SILNVVGPRKGKH-AAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGD 1435 Query 351 VRTNVYLAVFDKNL-YDKLVSSFLEMK--SEKQVEQKIAEIPKEEVKPFITESKPSVEQR 407 + + L V+SF + V Q++ + E+ P + P R Sbjct 1436 RVCKCFCYTDKERLAIQNFVTSFQTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPCEPFR 1495 Query 408 KQDDKKIKACVEEVTTTLEETKFLT 432 + D K + +L+ T+ ++ Sbjct 1496 IEGDAKFYDLTPSMVQSLQVTRLVS 1520 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 60/188 (32%), Gaps = 14/188 (7%) Query 833 NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANF 892 + Y GL + + NNC++++AL+ LQ L + +Q AG + Sbjct 1080 PDVFAFSYASYGGLKVLNQSSNNCWVSSALVQLQLTGL-LDSDEMQL----FNAGRVSPM 1134 Query 893 CALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMY 952 G LGDV + L + + S ++ C G + A+ Sbjct 1135 VKRCYESQRAIFGSLGDVSACLESLLKDRDGMSITCTIDCGCGP-GVRVYE----NAIFR 1189 Query 953 MGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM-SAPPAQYELKHGTFTCASEYTG 1011 L + C K + Q + + A + CA+ Y G Sbjct 1190 FTPLKT---AFPMGRCLICSKTLMHTITQMKGTGIFCRDATALDVDTLVVKPLCAAVYVG 1246 Query 1012 NYQCGHYK 1019 GHY Sbjct 1247 AQDGGHYL 1254 Score = 39.4 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 81/211 (38%), Gaps = 22/211 (10%) Query 5 VTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIK 63 VT D+ V + V + +E + D+ L + C +GT++ V Sbjct 900 VTISDEVQVRTIDPVYKVRLEYEFE---DETLVKVC---EKAIGTKLK-----VTGDWSN 948 Query 64 TLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEF 123 L+ + + + + LD + Y+++DE G L + S +P D E D + + Sbjct 949 LLETLEKAMDVVRQHLD---VPDYFVYDEEGGTDLNLTIMVSQWPLSSDSE-DDFKAVDD 1004 Query 124 EPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEE-DWLDDDSQQTVGQQDGSEDNQTT 182 EP+ D+ E A + +Q + Q+E + + D + + + + Sbjct 1005 EPN-----ANTDETVDTFAEDVAETQNVQQDVTQDEVEAVCDLVVKATEEGPIEHEELSE 1059 Query 183 TIQTIVEVQPQLEMELTPVVQTIEVNSFSGY 213 + + + +E + V + S++ Y Sbjct 1060 DQKEVQQALAFIEDKPVVVKPDVFAFSYASY 1090 >sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 573 bits (1477), Expect = 7e-167, Method: Composition-based stats. Identities = 193/780 (25%), Positives = 328/780 (42%), Gaps = 79/780 (10%) Query 1182 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 1241 +T T + + ST V S VLK G+D+ C P+ + VV Sbjct 1814 TSTTCDGTCSTKRVVSTPVVNAS----VLKV----GLDDGNCVHGLPLVDRVVSVNGTVI 1865 Query 1242 DVLECNVKTTEVVG-DIILKPANNSLKITEEVGHTDLMAAYVDNSSLT----IKKPNELS 1296 + VV + +L + + + + L + KP +L+ Sbjct 1866 ITNVGDTPGKPVVATENLLLDGVSYTVFQDSTTGVGHYTVFDKEAKLMFDGDVLKPCDLN 1925 Query 1297 RVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVT--RCLNRVCTNYMPYF 1354 + + V P + A FL+ + + T ++R + Y Sbjct 1926 VSPVTSVVVCNNKKIVVQDPVKRVELDASKFLDTMNVASEKFFTFGDFVSRNIIVLIVYL 1985 Query 1355 FTLLLQLCTFTRSTNSRIKASMP---TTIAKNTVK---SVGKFCLEASFNYLKSPNFSKL 1408 F+LL + + ++ A +P I K +VK KF F Y+K Sbjct 1986 FSLLAICFRALKKRDMKVMAGVPERTGIILKRSVKYNYKALKFFFRLKFQYIKV------ 2039 Query 1409 INIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSI 1468 FL S+ L +L Y+ + + + +G P C Y +GY NST YC + Sbjct 2040 ------FLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYCGN-V 2089 Query 1469 PCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAI 1528 C +CL G + L + I + L L + + I+F FF +G+ Sbjct 2090 LCKICLYGYEELSDFTHTRVIWQHLKDP---LIGNILPLFYLVFLIIFGGFFVRIGITYF 2146 Query 1529 MQLFFSY--FAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGC 1586 + + + A+ + N WL+ L+ P ++M + + + HV+ GC Sbjct 2147 IMQYINAAGVALGYQDNVWLLHLL-------PFNSMGNIIVVAFIVTRILLFLKHVLFGC 2199 Query 1587 NSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTF 1646 + +C+ C K + TRV TI+ GV +SFYV ANGGK FCK HN+ CV+CD++ G TF Sbjct 2200 DKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTF 2259 Query 1647 ISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNL 1706 I+D +A +LS K + PT ++ I+D V NG +LY K + + + Sbjct 2260 INDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACK 2319 Query 1707 DNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSA 1766 D L+ N + + +VF S + K+A VY+SQL+C+PI L+D AL++ + Sbjct 2320 DVLKNCN----ILTDFVVF-NNSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASLN--V 2372 Query 1767 EVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDS 1826 + + + A+V S++F + + + R+ S Sbjct 2373 DFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLGLS 2410 Query 1827 DVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPRDLGACIDCSARHINAQV 1885 DV ++ + +H+ D+ ++ S NN +++Y K E + D+ C+ A+ +N V Sbjct 2411 DVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNV 2470 Query 1886 AKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 N+ ++W KDF++LSE+ RK I K + F LT R + + T +A K G Sbjct 2471 LTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKG 2530 Score = 236 bits (602), Expect = 8e-61, Method: Composition-based stats. Identities = 88/404 (22%), Positives = 141/404 (35%), Gaps = 45/404 (11%) Query 708 EFLKRGDKSVYYTSNPTTF------HLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINL 761 +FLK + + + F + G V + +L E + ++V T D + Sbjct 1596 KFLKLKGSLLVVVEDSSVFNKISHASVAGYVAKPALVD---TLFEAKPVQVVVTQDQRSF 1652 Query 762 HTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTD 821 HT + S TYGQQ G ++ VT +KP + + V+PN V+ ++Y D Sbjct 1653 HTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDK--VVSVVPN-----VDWDKHYGFVD 1705 Query 822 PSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA 880 L+HT + VNG ++ +DNNC++ L LQ KF P LQ Sbjct 1706 AGI----FHTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAVCLQLQFANAKFKPKGLQQL 1761 Query 881 YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQ 940 + G+ A F + GE D T++ + + +L TC Sbjct 1762 WESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFLKPQGSVEMLRATSTTCDGT 1821 Query 941 QTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM--MSAPP----- 993 +T + V + ++ G C G +V ++ + P Sbjct 1822 CSTKRVVSTPVVNASVLKVGLDDG---NCVHGLPLVDRVVSVNGTVIITNVGDTPGKPVV 1878 Query 994 --AQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYK 1051 L ++T + T GHY + KE DG +L P+T V Sbjct 1879 ATENLLLDGVSYTVFQDST--TGVGHYT-VFDKEAKLMFDGDVLKPCDLNVSPVTSVVVC 1935 Query 1052 ENSYTTTIKPVTYKLDGVVCTEIDPK--LDNYYKKDNSYFTEQP 1093 N PV E+D LD +FT Sbjct 1936 NNKKIVVQDPV-------KRVELDASKFLDTMNVASEKFFTFGD 1972 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 73/265 (28%), Positives = 108/265 (41%), Gaps = 19/265 (7%) Query 175 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 234 G + TI T+ E+ + +V F Y N+ ++ V Sbjct 1268 GRHPIKFNTINTLCYKDVDWEVS----NGSCDVKPFLTYK----NIEFYQGELSALLS-V 1318 Query 235 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 294 VVNAAN L HGGG+A AL+ T +QV S+ Y++ NG +KVG ++ Sbjct 1319 NHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE--H 1376 Query 295 HCLHVVGPNVNKGEDIQLLKSAYE-NFNQHEVLLAPLLSAGIFGADPIHSLR---VCVDT 350 L+VVGP K +LL AY F Q V L PLLS GIF SL CV Sbjct 1377 SILNVVGPRKGKH-AAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGD 1435 Query 351 VRTNVYLAVFDKNL-YDKLVSSFLEMK--SEKQVEQKIAEIPKEEVKPFITESKPSVEQR 407 + + L V+SF + V Q++ + E+ P + P R Sbjct 1436 RVCKCFCYTDKERLAIQNFVTSFQTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPCEPFR 1495 Query 408 KQDDKKIKACVEEVTTTLEETKFLT 432 + D K + +L+ T+ ++ Sbjct 1496 IEGDAKFYDLTPSMVQSLQVTRLVS 1520 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 60/188 (32%), Gaps = 14/188 (7%) Query 833 NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANF 892 + Y GL + + NNC++++AL+ LQ L + +Q AG + Sbjct 1080 PDVFAFSYASYGGLKVLNQSSNNCWVSSALVQLQLTGL-LDSDEMQL----FNAGRVSPM 1134 Query 893 CALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMY 952 G LGDV + L + + S ++ C G + A+ Sbjct 1135 VKRCYESQRAIFGSLGDVSACLESLLKDRDGMSITCTIDCGCGP-GVRVYE----NAIFR 1189 Query 953 MGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM-SAPPAQYELKHGTFTCASEYTG 1011 L + C K + Q + + A + CA+ Y G Sbjct 1190 FTPLKT---AFPMGRCLICSKTLMHTITQMKGTGIFCRDATALDVDTLVVKPLCAAVYVG 1246 Query 1012 NYQCGHYK 1019 GHY Sbjct 1247 AQDGGHYL 1254 Score = 39.4 bits (90), Expect = 0.56, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 81/211 (38%), Gaps = 22/211 (10%) Query 5 VTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIK 63 VT D+ V + V + +E + D+ L + C +GT++ V Sbjct 900 VTISDEVQVRTIDPVYKVRLEYEFE---DETLVKVC---EKAIGTKLK-----VTGDWSN 948 Query 64 TLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEF 123 L+ + + + + LD + Y+++DE G L + S +P D E D + + Sbjct 949 LLETLEKAMDVVRQHLD---VPDYFVYDEEGGTDLNLTIMVSQWPLSSDSE-DDFKAVDD 1004 Query 124 EPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEE-DWLDDDSQQTVGQQDGSEDNQTT 182 EP+ D+ E A + +Q + Q+E + + D + + + + Sbjct 1005 EPN-----ANTDETVDTFAEDVAETQNVQQDVTQDEVEAVCDLVVKATEEGPIEHEELSE 1059 Query 183 TIQTIVEVQPQLEMELTPVVQTIEVNSFSGY 213 + + + +E + V + S++ Y Sbjct 1060 DQKEVQQALAFIEDKPVVVKPDVFAFSYASY 1090 >sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus 229E OX=11137 GN=1a PE=1 SV=1 Length=4085 Score = 554 bits (1426), Expect = 2e-160, Method: Composition-based stats. Identities = 169/654 (26%), Positives = 282/654 (43%), Gaps = 66/654 (10%) Query 1306 THGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVC-------TNYMPYFFTLL 1358 H L+ ++ + Y P N + + N++ FFT L Sbjct 1882 KHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLDEKAQKFFDFGDFLIHNFV-IFFTWL 1940 Query 1359 LQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIW 1414 L + T ++ + +I A P +S+ K+ L+AS LKS W Sbjct 1941 LSMFTLCKTAVTTGDVKIMAKAPQRTGVVLKRSL-KYNLKASAAVLKSK----------W 1989 Query 1415 FLLLSVC-LGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVC 1473 +LL L LIY+ ++ +L G ++C+ GY S N YC GS+ C +C Sbjct 1990 WLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYAKS-NFVKDDYCDGSLGCKMC 2048 Query 1474 LSGLDSLDTYPSLETIQITISSFKW-DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLF 1532 L G L + L+ + I+ + ++ F ++ + + R F + +A ++ Sbjct 2049 LFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLIFGDNYLRCFLLYFVAQMISTV 2108 Query 1533 FSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCM 1592 + + +W + P + + V HV+ GC + C+ Sbjct 2109 GVFLG--YKETNWFLHF-------IPFDVICDELLVTVIVIKVISFVRHVLFGCENPDCI 2159 Query 1593 MCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVA 1652 C K R R TIVNGV+RSFYV ANGG FCK H + CV+CD++ GSTFI+ EV+ Sbjct 2160 ACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDSYGYGSTFITPEVS 2219 Query 1653 RDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRAN 1712 R+L K + PT + ++D V +NG LY + + + S + + + Sbjct 2220 RELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDITESKYSCKEVFKNC 2279 Query 1713 NTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKM 1772 N + IVF+ + K+ASVY+SQL+C+PI L+D L+S + S + + Sbjct 2280 NV----LDDFIVFNNNG-TNVTQVKNASVYFSQLLCRPIKLVDSELLSTL--SVDFNGVL 2332 Query 1773 FDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKD 1832 AY++ ++F L ++ AE + A +S+ + Sbjct 2333 HKAYIDVLRNSFGKD---LNANMSLAECKRALGLSI--------------------SDHE 2369 Query 1833 VVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPRDLGACIDCSARHINAQVAKSHNI 1891 + +H+ D+ ++ S NN++ +Y K E ++ DL C+ A+ +NA V Sbjct 2370 FTSAISNAHRCDVLLSDLSFNNFVSSYAKPEEKLSAYDLACCMRAGAKVVNANVLTKDQT 2429 Query 1892 ALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 ++W+ KDF SLS + RK I +K L F LT + V + T I K G Sbjct 2430 PIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQAVTQIPATSIVAKQG 2483 Score = 267 bits (681), Expect = 4e-70, Method: Composition-based stats. Identities = 127/770 (16%), Positives = 260/770 (34%), Gaps = 71/770 (9%) Query 323 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK-QV 381 + +S G + + I+S +CVD N + L + + V Sbjct 1193 CSSIFRGAVSCGHYQTN-IYSQNLCVDGFGVNKIQPWTNDALNTICIKDADYNAKVEISV 1251 Query 382 EQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLE---ETKFLTENLLLY 438 + + F+ + K + + + V+ V ++ ENL Sbjct 1252 TPIKNTVDTTPKEEFVVKEKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHG 1311 Query 439 IDINGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLT---AVVIPTKKAGGTTEM 494 + L + + + + VG V+ E VV P +K ++ Sbjct 1312 GGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGP-RKGKHERDL 1370 Query 495 LAKALRKVPTDN--YITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGT 552 L KA + + +T G+ G +E + VL + + + + Sbjct 1371 LIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEV---KVFVYTDTEVCK 1427 Query 553 VSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTT 612 V + ++ + + + VS I+ + + VD ++ Sbjct 1428 VKDFVSGLVNVQKVEQPKI-----EPKPVSVIK-----VAPKPYRVDGKFSYF------- 1470 Query 613 VASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYL 672 L+ +D + +V + L L++ + + + +S + D V Sbjct 1471 TEDLLCVADD--KPIVL----FTDSMLTLDDRGLALDN-ALSGVLSAAIKDCVDINKAIP 1523 Query 673 TSS-SKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYY--TSNPTTFHLD 729 + + K + + + S KD + + + V L Sbjct 1524 SGNLIKFDIGSVVVYMCVVPSEKDKHLDNNVQRCTRKLNRLMCDIVCTIPADYILPLVLS 1583 Query 730 GEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKI 789 + L E + I + T D +N+H V ++ QQ G D++ Sbjct 1584 SLTCNVSFVGE-LKAAEAKVITIKVTEDGVNVHDVTVTTDKSFEQQVGVIADKDKDLSGA 1642 Query 790 KPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTS 848 P + + + + V+ E+Y D + ++H+ ++ VNG+ Sbjct 1643 VPSDLNTSELL-----TKAIDVDWVEFYGFKD----AVTFATVDHSAFAYESAVVNGIRV 1693 Query 849 IKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELG 908 +K +DNNC++ + LQ + F L A+ + G+ F A + G+ G Sbjct 1694 LKTSDNNCWVNAVCIALQYSKPHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKG 1753 Query 909 DVRETMSYLFQH-ANLDSCKRVLNVVCKTCGQQ-QTTLKGVEAVMYMGTLSYEQFKKGVQ 966 D +T++ L ++ AN + C C + + ++ + + + ++ + + G Sbjct 1754 DAEDTLTKLSKYLANEAQVQLEHYSSCVECDAKFKNSVASINSAIVCASVKRDGVQVGY- 1812 Query 967 IPCTCGKQATKYLVQQESPFVMMSA----PPAQYELKHGTFTCASEYTGNYQCGHYK-HI 1021 C G + + +++S P AQ L G A ++G GHY + Sbjct 1813 --CVHGIKYYSRVRSVRGRAIIVSVEQLEPCAQSRLLSGVAYTA--FSGPVDKGHYTVYD 1868 Query 1022 TSKETLYCIDGALLTKSSEYKGPITDVF----YKENSYTTTIKPVTYKLD 1067 T+K+++Y DG K +T V Y T KPV +LD Sbjct 1869 TAKKSMY--DGDRFVKHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLD 1916 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 69/249 (28%), Positives = 108/249 (43%), Gaps = 16/249 (6%) Query 173 QDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLK--------LTDNVYIKN 224 Q + D T + ++E+ +TP+ T++ ++ + DNV Sbjct 1226 QPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEFVVKEKLNAFLVHDNVAFYQ 1285 Query 225 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 284 D+ V +VNAAN L HGGG+A AL+ T +Q S ++I G +KVG Sbjct 1286 GDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTG 1345 Query 285 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSL 344 ++ +L +VVGP K E L+K+ N+ L P+LS GIFG SL Sbjct 1346 VMVECDSL--RIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSL 1403 Query 345 RVCVDTVRTN-VYLAVFDKNLYDK---LVSSFLEMKSEKQ--VEQKIAEIPKEEVKPFIT 398 V +D T V + V+ K VS + ++ +Q +E K + K KP+ Sbjct 1404 EVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRV 1463 Query 399 ESKPSVEQR 407 + K S Sbjct 1464 DGKFSYFTE 1472 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 55/273 (20%), Positives = 97/273 (36%), Gaps = 28/273 (10%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 + ++NGL +K DNNC++ + +L +Q + A+Q + G A Sbjct 1037 PFEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQF----FKMGRVAKMIERCYT 1092 Query 899 YCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSY 958 G +GDV M L + +L + V++ C + AV++ Sbjct 1093 AEQCIRGAMGDVGLCMYRLLK--DLHTGFMVMDYKCSCTSGRLEES---GAVLFCTPTKK 1147 Query 959 EQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTF----TCASEYTGNYQ 1014 C + Q + + + P + +F C+S + G Sbjct 1148 ---AFPYGTCLNCNAPRMCTIRQLQGTIIFVQQKPE--PVNPVSFVVKPVCSSIFRGAVS 1202 Query 1015 CGHYKHITSKETLYCIDGALLTKS------SEYKGPITDVFYKENSYTTTIKPVTYKLDG 1068 CGHY+ + L C+DG + K + I D Y + P+ +D Sbjct 1203 CGHYQTNIYSQNL-CVDGFGVNKIQPWTNDALNTICIKDADYNAKVEISVT-PIKNTVDT 1260 Query 1069 VVCTE--IDPKLDNYYKKDNSYFTEQPIDLVPN 1099 E + KL+ + DN F + +D V N Sbjct 1261 TPKEEFVVKEKLNAFLVHDNVAFYQGDVDTVVN 1293 >sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 554 bits (1426), Expect = 2e-160, Method: Composition-based stats. Identities = 169/654 (26%), Positives = 282/654 (43%), Gaps = 66/654 (10%) Query 1306 THGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVC-------TNYMPYFFTLL 1358 H L+ ++ + Y P N + + N++ FFT L Sbjct 1882 KHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLDEKAQKFFDFGDFLIHNFV-IFFTWL 1940 Query 1359 LQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIW 1414 L + T ++ + +I A P +S+ K+ L+AS LKS W Sbjct 1941 LSMFTLCKTAVTTGDVKIMAKAPQRTGVVLKRSL-KYNLKASAAVLKSK----------W 1989 Query 1415 FLLLSVC-LGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVC 1473 +LL L LIY+ ++ +L G ++C+ GY S N YC GS+ C +C Sbjct 1990 WLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYAKS-NFVKDDYCDGSLGCKMC 2048 Query 1474 LSGLDSLDTYPSLETIQITISSFKW-DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLF 1532 L G L + L+ + I+ + ++ F ++ + + R F + +A ++ Sbjct 2049 LFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLIFGDNYLRCFLLYFVAQMISTV 2108 Query 1533 FSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCM 1592 + + +W + P + + V HV+ GC + C+ Sbjct 2109 GVFLG--YKETNWFLHF-------IPFDVICDELLVTVIVIKVISFVRHVLFGCENPDCI 2159 Query 1593 MCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVA 1652 C K R R TIVNGV+RSFYV ANGG FCK H + CV+CD++ GSTFI+ EV+ Sbjct 2160 ACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDSYGYGSTFITPEVS 2219 Query 1653 RDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRAN 1712 R+L K + PT + ++D V +NG LY + + + S + + + Sbjct 2220 RELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDITESKYSCKEVFKNC 2279 Query 1713 NTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKM 1772 N + IVF+ + K+ASVY+SQL+C+PI L+D L+S + S + + Sbjct 2280 NV----LDDFIVFNNNG-TNVTQVKNASVYFSQLLCRPIKLVDSELLSTL--SVDFNGVL 2332 Query 1773 FDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKD 1832 AY++ ++F L ++ AE + A +S+ + Sbjct 2333 HKAYIDVLRNSFGKD---LNANMSLAECKRALGLSI--------------------SDHE 2369 Query 1833 VVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPRDLGACIDCSARHINAQVAKSHNI 1891 + +H+ D+ ++ S NN++ +Y K E ++ DL C+ A+ +NA V Sbjct 2370 FTSAISNAHRCDVLLSDLSFNNFVSSYAKPEEKLSAYDLACCMRAGAKVVNANVLTKDQT 2429 Query 1892 ALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 ++W+ KDF SLS + RK I +K L F LT + V + T I K G Sbjct 2430 PIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQAVTQIPATSIVAKQG 2483 Score = 267 bits (681), Expect = 5e-70, Method: Composition-based stats. Identities = 127/770 (16%), Positives = 260/770 (34%), Gaps = 71/770 (9%) Query 323 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK-QV 381 + +S G + + I+S +CVD N + L + + V Sbjct 1193 CSSIFRGAVSCGHYQTN-IYSQNLCVDGFGVNKIQPWTNDALNTICIKDADYNAKVEISV 1251 Query 382 EQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLE---ETKFLTENLLLY 438 + + F+ + K + + + V+ V ++ ENL Sbjct 1252 TPIKNTVDTTPKEEFVVKEKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHG 1311 Query 439 IDINGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLT---AVVIPTKKAGGTTEM 494 + L + + + + VG V+ E VV P +K ++ Sbjct 1312 GGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGP-RKGKHERDL 1370 Query 495 LAKALRKVPTDN--YITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGT 552 L KA + + +T G+ G +E + VL + + + + Sbjct 1371 LIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEV---KVFVYTDTEVCK 1427 Query 553 VSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTT 612 V + ++ + + + VS I+ + + VD ++ Sbjct 1428 VKDFVSGLVNVQKVEQPKI-----EPKPVSVIK-----VAPKPYRVDGKFSYF------- 1470 Query 613 VASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYL 672 L+ +D + +V + L L++ + + + +S + D V Sbjct 1471 TEDLLCVADD--KPIVL----FTDSMLTLDDRGLALDN-ALSGVLSAAIKDCVDINKAIP 1523 Query 673 TSS-SKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYY--TSNPTTFHLD 729 + + K + + + S KD + + + V L Sbjct 1524 SGNLIKFDIGSVVVYMCVVPSEKDKHLDNNVQRCTRKLNRLMCDIVCTIPADYILPLVLS 1583 Query 730 GEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKI 789 + L E + I + T D +N+H V ++ QQ G D++ Sbjct 1584 SLTCNVSFVGE-LKAAEAKVITIKVTEDGVNVHDVTVTTDKSFEQQVGVIADKDKDLSGA 1642 Query 790 KPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTS 848 P + + + + V+ E+Y D + ++H+ ++ VNG+ Sbjct 1643 VPSDLNTSELL-----TKAIDVDWVEFYGFKD----AVTFATVDHSAFAYESAVVNGIRV 1693 Query 849 IKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELG 908 +K +DNNC++ + LQ + F L A+ + G+ F A + G+ G Sbjct 1694 LKTSDNNCWVNAVCIALQYSKPHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKG 1753 Query 909 DVRETMSYLFQH-ANLDSCKRVLNVVCKTCGQQ-QTTLKGVEAVMYMGTLSYEQFKKGVQ 966 D +T++ L ++ AN + C C + + ++ + + + ++ + + G Sbjct 1754 DAEDTLTKLSKYLANEAQVQLEHYSSCVECDAKFKNSVASINSAIVCASVKRDGVQVGY- 1812 Query 967 IPCTCGKQATKYLVQQESPFVMMSA----PPAQYELKHGTFTCASEYTGNYQCGHYK-HI 1021 C G + + +++S P AQ L G A ++G GHY + Sbjct 1813 --CVHGIKYYSRVRSVRGRAIIVSVEQLEPCAQSRLLSGVAYTA--FSGPVDKGHYTVYD 1868 Query 1022 TSKETLYCIDGALLTKSSEYKGPITDVF----YKENSYTTTIKPVTYKLD 1067 T+K+++Y DG K +T V Y T KPV +LD Sbjct 1869 TAKKSMY--DGDRFVKHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLD 1916 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 69/249 (28%), Positives = 108/249 (43%), Gaps = 16/249 (6%) Query 173 QDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLK--------LTDNVYIKN 224 Q + D T + ++E+ +TP+ T++ ++ + DNV Sbjct 1226 QPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEFVVKEKLNAFLVHDNVAFYQ 1285 Query 225 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 284 D+ V +VNAAN L HGGG+A AL+ T +Q S ++I G +KVG Sbjct 1286 GDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTG 1345 Query 285 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSL 344 ++ +L +VVGP K E L+K+ N+ L P+LS GIFG SL Sbjct 1346 VMVECDSL--RIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSL 1403 Query 345 RVCVDTVRTN-VYLAVFDKNLYDK---LVSSFLEMKSEKQ--VEQKIAEIPKEEVKPFIT 398 V +D T V + V+ K VS + ++ +Q +E K + K KP+ Sbjct 1404 EVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRV 1463 Query 399 ESKPSVEQR 407 + K S Sbjct 1464 DGKFSYFTE 1472 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 55/273 (20%), Positives = 97/273 (36%), Gaps = 28/273 (10%) Query 839 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 898 + ++NGL +K DNNC++ + +L +Q + A+Q + G A Sbjct 1037 PFEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQF----FKMGRVAKMIERCYT 1092 Query 899 YCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSY 958 G +GDV M L + +L + V++ C + AV++ Sbjct 1093 AEQCIRGAMGDVGLCMYRLLK--DLHTGFMVMDYKCSCTSGRLEES---GAVLFCTPTKK 1147 Query 959 EQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTF----TCASEYTGNYQ 1014 C + Q + + + P + +F C+S + G Sbjct 1148 ---AFPYGTCLNCNAPRMCTIRQLQGTIIFVQQKPE--PVNPVSFVVKPVCSSIFRGAVS 1202 Query 1015 CGHYKHITSKETLYCIDGALLTKS------SEYKGPITDVFYKENSYTTTIKPVTYKLDG 1068 CGHY+ + L C+DG + K + I D Y + P+ +D Sbjct 1203 CGHYQTNIYSQNL-CVDGFGVNKIQPWTNDALNTICIKDADYNAKVEISVT-PIKNTVDT 1260 Query 1069 VVCTE--IDPKLDNYYKKDNSYFTEQPIDLVPN 1099 E + KL+ + DN F + +D V N Sbjct 1261 TPKEEFVVKEKLNAFLVHDNVAFYQGDVDTVVN 1293 >sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1 Length=4117 Score = 537 bits (1383), Expect = 4e-155, Method: Composition-based stats. Identities = 166/743 (22%), Positives = 295/743 (40%), Gaps = 62/743 (8%) Query 1210 LKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKIT 1269 L ED L V + + K V+ + + V N + Sbjct 1829 LGVEDGLCPHGLNYIGKVVVVKGTTIVVNVGKPVVAPSHLFLKGVSYTTFLDNGNG--VV 1886 Query 1270 EEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLN 1329 D V + + +S V + + + A V P A L+ Sbjct 1887 GHYTVFDHGTGMVHDGDAFVPGDLNVSPVTNV--VVSEQTAVVIKDPVKKAELDATKLLD 1944 Query 1330 KVVSTTTNIVT--RCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKS 1387 + + + ++R Y ++L R + ++ A +P ++ Sbjct 1945 TMNYASERFFSFGDFMSRNLITVFLYILSILGLCFRAFRKRDVKVLAGVPQR-TGIILRK 2003 Query 1388 VGKFCLEASFNYLKSPNFSKLINIIIWFLLLS-VCLG-SLIYSTAALGVLMSNLGMPSYC 1445 ++ +A + K + WF +L LG +Y+ + + + +G P C Sbjct 2004 SMRYNAKALGVFFKLK--------LYWFKVLGKFSLGIYALYALLFMTIRFTPIGSP-VC 2054 Query 1446 TGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-DLTAFG 1504 GY NS+ YC S+ C VCL G L + + + + ++ F Sbjct 2055 DDVVAGYANSS-FDKNEYC-NSVICKVCLYGYQELSDFSHTQVVWQHLRDPLIGNVMPFF 2112 Query 1505 LVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVR 1564 +A + ++ + + + + + + I +Q+ P Sbjct 2113 YLAFLAIFGGVYVKAITLYFIFQYLNSLGVFLG---------LQQSIWFLQLVPFDVFGD 2163 Query 1565 MYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGK 1624 + F V HV GC+ ++C+ C K R RV TI G +SFYV+ANGG Sbjct 2164 EIVVFFIVTRVLMFIKHVCLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGS 2223 Query 1625 GFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIH 1684 FCK HN+ C+NCD++ G TFI+D +A ++ K + PT ++ ++D V NG + Sbjct 2224 KFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYY 2283 Query 1685 LYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYS 1744 LY K + S + + L+ S+ + IVF+ + K+A VY+S Sbjct 2284 LYSGDTFWKYNFDITDSKYTCKEALK----NCSIITDFIVFNNNG-SNVNQVKNACVYFS 2338 Query 1745 QLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAK 1804 Q++C+P+ L+D AL++ + S + + A+V+ S++F + + + Sbjct 2339 QMLCKPVKLVDSALLASL--SVDFGASLHSAFVSVLSNSFGKDLSSCNDM-----QDCKS 2391 Query 1805 NVSLDNV-LSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVE 1863 + D+V L TF +A + +H+ D+ +T S NN+ +Y K E Sbjct 2392 TLGFDDVPLDTFNAAVAE------------------AHRYDVLLTDMSFNNFTTSYAKPE 2433 Query 1864 NMTP-RDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPF 1922 P D+ C+ A+ +N V +I ++W V+DF++LSE+ RK I K + F Sbjct 2434 EKFPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITF 2493 Query 1923 KLTCATTRQVVNVVTTKIALKGG 1945 LT R + T IA K G Sbjct 2494 MLTFNDCRMHTTIPTVCIANKKG 2516 Score = 280 bits (715), Expect = 4e-74, Method: Composition-based stats. Identities = 140/736 (19%), Positives = 255/736 (35%), Gaps = 85/736 (12%) Query 365 YDKLVSSFL-EMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTT 423 YD L + + ++ + + + + VKPF + + +K + V Sbjct 1261 YDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSYKNVD-FYQGDFSDLVKLPCDFVVN 1319 Query 424 TLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVG-DVVQEG---VLT 479 E + ID+ + ++ ++K P VG V+ E + Sbjct 1320 AANEKLSHGGGIAKAIDV------YTKGMLQKCSNDYIKAHGPIKVGRGVMLEALGLKVF 1373 Query 480 AVVIPTKKAGGTTEMLAKALRKVPTDN--YITTYPGQGLNGYTVEEAKTVLKKCKSAFYI 537 VV P +K E+L KA + V ++ +T G+ +EE+ + C + Sbjct 1374 NVVGP-RKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHC 1432 Query 538 LPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGV 597 ++++E + L + + E PV + + Q K + Sbjct 1433 KCFCYGDKEREAIIKYMDGLVDAI-FKEALVDTTPVQEDVQ------QVSQKPVLPNFEP 1485 Query 598 VD-YGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPAT 656 GA ++ + + SL L + L+ + + + A Sbjct 1486 FRIEGAHAFYECNPEGLMSLGADKLVL----------FTNSNLDFCSVGKCLNDVTSGAL 1535 Query 657 -----VSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLK 711 V S V A N +T + + G D +Y + ++ K Sbjct 1536 LEAINVFKKSNKTVPAGNC-VTLDCANMISITMVVLPFDG---DANYDKNYARAVVKVSK 1591 Query 712 RGDKSVYYTSNPTTFHLD------GEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQV 765 K V + T + G V T D+++ + +++ + T D ++ Sbjct 1592 LKGKLVLAVDDATLYSKLSHLSVLGFVSTPDDVERFYAN---KSVVIKVTEDTRSVKAVK 1648 Query 766 VDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFL 825 V+ + TYGQQ GP ++ VT KP + V+PN + ++ ++ D + Sbjct 1649 VESTATYGQQIGPCLVNDTVVTDNKPVVADV--VAKVVPNAN------WDSHYGFDKAGE 1700 Query 826 GRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRA 884 L+HT + VNG IK DNNC++ L LQ +F LQ + Sbjct 1701 ---FHMLDHTGFTFPSEVVNGRRVIKTTDNNCWVNVTCLQLQFARFRFKSAGLQAMWESY 1757 Query 885 RAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH---ANLDSCKRVLNVVCKTCGQQQ 941 G+ A F + G+ D ++ L ++ A + +RV + C C ++ Sbjct 1758 CTGDVAMFVHWLYWLTGVDKGQPSDSENALNMLSKYIVPAGSVTIERVTHDGC-CCSKRV 1816 Query 942 TTLKGVEAVMYMGTLSYEQFKKGVQ---IPCTCGKQATKYLVQQESPFVMMSAP---PAQ 995 T V A + K GV+ P +V+ + V + P P+ Sbjct 1817 VTAPVVNASV---------LKLGVEDGLCPHGLNYIGKVVVVKGTTIVVNVGKPVVAPSH 1867 Query 996 YELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSY 1055 LK ++T + GN GHY + T DG P+T+V E + Sbjct 1868 LFLKGVSYTTFLD-NGNGVVGHYT-VFDHGTGMVHDGDAFVPGDLNVSPVTNVVVSEQTA 1925 Query 1056 TTTIKPVTY-KLDGVV 1070 PV +LD Sbjct 1926 VVIKDPVKKAELDATK 1941 Score = 167 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 69/277 (25%), Positives = 106/277 (38%), Gaps = 19/277 (7%) Query 175 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIE---VNSFSGYLKLTDNVYIKNADIVEEA 231 G + T+ TI L P V ++ V F Y NV D + Sbjct 1255 GRHQIKYDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSYK----NVDFYQGDFSDLV 1310 Query 232 KKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHN 291 K + VVNAAN L HGGG+A A++ T +Q S+DYI +GP+KVG +L Sbjct 1311 K-LPCDFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA-- 1367 Query 292 LAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTV 351 L +VVGP K L+K+ F V L PL+S GIF SL + V Sbjct 1368 LGLKVFNVVGPRKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACV 1427 Query 352 -RTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPS---VEQR 407 + + + ++ + E + P +E +++ R Sbjct 1428 GDRHCKCFCYGDKEREAIIKYMDGLVDAIFKEALVDTTPVQEDVQQVSQKPVLPNFEPFR 1487 Query 408 KQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGN 444 + C E +L + L+L+ + N + Sbjct 1488 IEGAHAFYECNPEGLMSLG-----ADKLVLFTNSNLD 1519 Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 88/259 (34%), Gaps = 27/259 (10%) Query 837 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 896 + + GL ++ + NNC++ + L+ LQ + + +P A AG Sbjct 1072 AFDFVSYGGLKVLRQSHNNCWVTSTLVQLQLLGIVDDP-----AMELFSAGRVGPMVRKC 1126 Query 897 LAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 +G LGDV + L + +L + K +VVC CG + +G + T Sbjct 1127 YESQKAILGSLGDVSACLESLTK--DLHTLKITCSVVCG-CGTGERIYEG---CAFRMTP 1180 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFT--CASEYTGNYQ 1014 + E F C + + L CA+ + G Sbjct 1181 TLEPF--PYGACAQCAQVLMHTFKSIVGTGIFCRDT-TALSLDSLVVKPLCAAAFIGKDS 1237 Query 1015 CGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEI 1074 GHY + IDG + + + K+ ++T P+ +D VV + Sbjct 1238 -GHYVTNF-YDAAMAIDG--YGRHQIKYDTLNTICVKDVNWTA---PLVPAVDSVVEPVV 1290 Query 1075 DPKLDNYYKKDNSYFTEQP 1093 P +Y N F + Sbjct 1291 KP----FYSYKNVDFYQGD 1305 >sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 537 bits (1384), Expect = 4e-155, Method: Composition-based stats. Identities = 166/743 (22%), Positives = 295/743 (40%), Gaps = 62/743 (8%) Query 1210 LKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKIT 1269 L ED L V + + K V+ + + V N + Sbjct 1829 LGVEDGLCPHGLNYIGKVVVVKGTTIVVNVGKPVVAPSHLFLKGVSYTTFLDNGNG--VV 1886 Query 1270 EEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLN 1329 D V + + +S V + + + A V P A L+ Sbjct 1887 GHYTVFDHGTGMVHDGDAFVPGDLNVSPVTNV--VVSEQTAVVIKDPVKKAELDATKLLD 1944 Query 1330 KVVSTTTNIVT--RCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKS 1387 + + + ++R Y ++L R + ++ A +P ++ Sbjct 1945 TMNYASERFFSFGDFMSRNLITVFLYILSILGLCFRAFRKRDVKVLAGVPQR-TGIILRK 2003 Query 1388 VGKFCLEASFNYLKSPNFSKLINIIIWFLLLS-VCLG-SLIYSTAALGVLMSNLGMPSYC 1445 ++ +A + K + WF +L LG +Y+ + + + +G P C Sbjct 2004 SMRYNAKALGVFFKLK--------LYWFKVLGKFSLGIYALYALLFMTIRFTPIGSP-VC 2054 Query 1446 TGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-DLTAFG 1504 GY NS+ YC S+ C VCL G L + + + + ++ F Sbjct 2055 DDVVAGYANSS-FDKNEYC-NSVICKVCLYGYQELSDFSHTQVVWQHLRDPLIGNVMPFF 2112 Query 1505 LVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVR 1564 +A + ++ + + + + + + I +Q+ P Sbjct 2113 YLAFLAIFGGVYVKAITLYFIFQYLNSLGVFLG---------LQQSIWFLQLVPFDVFGD 2163 Query 1565 MYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGK 1624 + F V HV GC+ ++C+ C K R RV TI G +SFYV+ANGG Sbjct 2164 EIVVFFIVTRVLMFIKHVCLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGS 2223 Query 1625 GFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIH 1684 FCK HN+ C+NCD++ G TFI+D +A ++ K + PT ++ ++D V NG + Sbjct 2224 KFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYY 2283 Query 1685 LYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYS 1744 LY K + S + + L+ S+ + IVF+ + K+A VY+S Sbjct 2284 LYSGDTFWKYNFDITDSKYTCKEALK----NCSIITDFIVFNNNG-SNVNQVKNACVYFS 2338 Query 1745 QLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAK 1804 Q++C+P+ L+D AL++ + S + + A+V+ S++F + + + Sbjct 2339 QMLCKPVKLVDSALLASL--SVDFGASLHSAFVSVLSNSFGKDLSSCNDM-----QDCKS 2391 Query 1805 NVSLDNV-LSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVE 1863 + D+V L TF +A + +H+ D+ +T S NN+ +Y K E Sbjct 2392 TLGFDDVPLDTFNAAVAE------------------AHRYDVLLTDMSFNNFTTSYAKPE 2433 Query 1864 NMTP-RDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPF 1922 P D+ C+ A+ +N V +I ++W V+DF++LSE+ RK I K + F Sbjct 2434 EKFPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITF 2493 Query 1923 KLTCATTRQVVNVVTTKIALKGG 1945 LT R + T IA K G Sbjct 2494 MLTFNDCRMHTTIPTVCIANKKG 2516 Score = 280 bits (715), Expect = 4e-74, Method: Composition-based stats. Identities = 140/736 (19%), Positives = 255/736 (35%), Gaps = 85/736 (12%) Query 365 YDKLVSSFL-EMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTT 423 YD L + + ++ + + + + VKPF + + +K + V Sbjct 1261 YDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSYKNVD-FYQGDFSDLVKLPCDFVVN 1319 Query 424 TLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVG-DVVQEG---VLT 479 E + ID+ + ++ ++K P VG V+ E + Sbjct 1320 AANEKLSHGGGIAKAIDV------YTKGMLQKCSNDYIKAHGPIKVGRGVMLEALGLKVF 1373 Query 480 AVVIPTKKAGGTTEMLAKALRKVPTDN--YITTYPGQGLNGYTVEEAKTVLKKCKSAFYI 537 VV P +K E+L KA + V ++ +T G+ +EE+ + C + Sbjct 1374 NVVGP-RKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHC 1432 Query 538 LPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGV 597 ++++E + L + + E PV + + Q K + Sbjct 1433 KCFCYGDKEREAIIKYMDGLVDAI-FKEALVDTTPVQEDVQ------QVSQKPVLPNFEP 1485 Query 598 VD-YGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPAT 656 GA ++ + + SL L + L+ + + + A Sbjct 1486 FRIEGAHAFYECNPEGLMSLGADKLVL----------FTNSNLDFCSVGKCLNDVTSGAL 1535 Query 657 -----VSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLK 711 V S V A N +T + + G D +Y + ++ K Sbjct 1536 LEAINVFKKSNKTVPAGNC-VTLDCANMISITMVVLPFDG---DANYDKNYARAVVKVSK 1591 Query 712 RGDKSVYYTSNPTTFHLD------GEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQV 765 K V + T + G V T D+++ + +++ + T D ++ Sbjct 1592 LKGKLVLAVDDATLYSKLSHLSVLGFVSTPDDVERFYAN---KSVVIKVTEDTRSVKAVK 1648 Query 766 VDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFL 825 V+ + TYGQQ GP ++ VT KP + V+PN + ++ ++ D + Sbjct 1649 VESTATYGQQIGPCLVNDTVVTDNKPVVADV--VAKVVPNAN------WDSHYGFDKAGE 1700 Query 826 GRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRA 884 L+HT + VNG IK DNNC++ L LQ +F LQ + Sbjct 1701 ---FHMLDHTGFTFPSEVVNGRRVIKTTDNNCWVNVTCLQLQFARFRFKSAGLQAMWESY 1757 Query 885 RAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH---ANLDSCKRVLNVVCKTCGQQQ 941 G+ A F + G+ D ++ L ++ A + +RV + C C ++ Sbjct 1758 CTGDVAMFVHWLYWLTGVDKGQPSDSENALNMLSKYIVPAGSVTIERVTHDGC-CCSKRV 1816 Query 942 TTLKGVEAVMYMGTLSYEQFKKGVQ---IPCTCGKQATKYLVQQESPFVMMSAP---PAQ 995 T V A + K GV+ P +V+ + V + P P+ Sbjct 1817 VTAPVVNASV---------LKLGVEDGLCPHGLNYIGKVVVVKGTTIVVNVGKPVVAPSH 1867 Query 996 YELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSY 1055 LK ++T + GN GHY + T DG P+T+V E + Sbjct 1868 LFLKGVSYTTFLD-NGNGVVGHYT-VFDHGTGMVHDGDAFVPGDLNVSPVTNVVVSEQTA 1925 Query 1056 TTTIKPVTY-KLDGVV 1070 PV +LD Sbjct 1926 VVIKDPVKKAELDATK 1941 Score = 167 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 69/277 (25%), Positives = 106/277 (38%), Gaps = 19/277 (7%) Query 175 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIE---VNSFSGYLKLTDNVYIKNADIVEEA 231 G + T+ TI L P V ++ V F Y NV D + Sbjct 1255 GRHQIKYDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSYK----NVDFYQGDFSDLV 1310 Query 232 KKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHN 291 K + VVNAAN L HGGG+A A++ T +Q S+DYI +GP+KVG +L Sbjct 1311 K-LPCDFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA-- 1367 Query 292 LAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTV 351 L +VVGP K L+K+ F V L PL+S GIF SL + V Sbjct 1368 LGLKVFNVVGPRKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACV 1427 Query 352 -RTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPS---VEQR 407 + + + ++ + E + P +E +++ R Sbjct 1428 GDRHCKCFCYGDKEREAIIKYMDGLVDAIFKEALVDTTPVQEDVQQVSQKPVLPNFEPFR 1487 Query 408 KQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGN 444 + C E +L + L+L+ + N + Sbjct 1488 IEGAHAFYECNPEGLMSLG-----ADKLVLFTNSNLD 1519 Score = 65.6 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 88/259 (34%), Gaps = 27/259 (10%) Query 837 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 896 + + GL ++ + NNC++ + L+ LQ + + +P A AG Sbjct 1072 AFDFVSYGGLKVLRQSHNNCWVTSTLVQLQLLGIVDDP-----AMELFSAGRVGPMVRKC 1126 Query 897 LAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 956 +G LGDV + L + +L + K +VVC CG + +G + T Sbjct 1127 YESQKAILGSLGDVSACLESLTK--DLHTLKITCSVVCG-CGTGERIYEG---CAFRMTP 1180 Query 957 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFT--CASEYTGNYQ 1014 + E F C + + L CA+ + G Sbjct 1181 TLEPF--PYGACAQCAQVLMHTFKSIVGTGIFCRDT-TALSLDSLVVKPLCAAAFIGKDS 1237 Query 1015 CGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEI 1074 GHY + IDG + + + K+ ++T P+ +D VV + Sbjct 1238 -GHYVTNF-YDAAMAIDG--YGRHQIKYDTLNTICVKDVNWTA---PLVPAVDSVVEPVV 1290 Query 1075 DPKLDNYYKKDNSYFTEQP 1093 P +Y N F + Sbjct 1291 KP----FYSYKNVDFYQGD 1305 >sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 525 bits (1351), Expect = 6e-151, Method: Composition-based stats. Identities = 153/659 (23%), Positives = 272/659 (41%), Gaps = 59/659 (9%) Query 1293 NELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMP 1352 ++LS + + G N TI + ++K+ + N + Sbjct 1856 SDLSTLAVTAIVVVGGCVTSN---VPTIVSEKISVMDKLDTGAQKFFQ--FGDFVMNNIV 1910 Query 1353 YFFTLLLQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKL 1408 F T LL + + R++ + ++ A P +S K+ + ++ +K Sbjct 1911 LFLTWLLSMFSLLRTSIMKHDIKVIAKAPKRTGVILTRS-FKYNIRSALFVIKQK----- 1964 Query 1409 INIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSI 1468 +I+ L L ++ + C GY ST YC S+ Sbjct 1965 WCVIV--TLFKFLLLLYAIYALVFMIVQFSPFNSLLCGDIVSGYEKST-FNKDIYCGNSM 2021 Query 1469 PCSVCLSGLDSLDTYPSLETIQITISSF-KWDLTAFGLVAEWFLAYILFTRFFYVLGLAA 1527 C +CL + + I L F ++ + ++ RF + +A Sbjct 2022 VCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPFVILVILLIFGNMYLRFGLLYFVAQ 2081 Query 1528 IMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCN 1587 + F S+ H W + P + ++ + H++ GCN Sbjct 2082 FISTFGSFLGFH--QKQWFLHF-------VPFDVLCNEFLATFIVCKIVLFVRHIIVGCN 2132 Query 1588 SSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFI 1647 ++ C+ C K R RV TI+NG+ +SFYV ANGG FC HN+ CVNCD+F G+TFI Sbjct 2133 NADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKHNFFCVNCDSFGPGNTFI 2192 Query 1648 SDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLD 1707 + ++AR+L K + PT + I+D V NG LY + + S + + Sbjct 2193 NGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLYSGDTFWRYDFDITESKYSCKE 2252 Query 1708 NLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAE 1767 L+ N N IV++ S + K+A VY+SQL+C+PI L++ L+S + S + Sbjct 2253 VLKNCNV----LENFIVYNN-SGSNITQIKNACVYFSQLLCEPIKLVNSELLSTL--SVD 2305 Query 1768 VAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSD 1827 + AYV+ ++F ++L ++ AE + ++ Sbjct 2306 FNGVLHKAYVDVLCNSF---FKELTANMSMAECKATLGLT-------------------- 2342 Query 1828 VETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPRDLGACIDCSARHINAQVA 1886 V D V + +H+ D+ ++ S NN+ ++Y K + ++ D+ C+ ++ +N V Sbjct 2343 VSDDDFVSAVANAHRYDVLLSDLSFNNFFISYAKPEDKLSVYDIACCMRAGSKVVNHNVL 2402 Query 1887 KSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 +I ++W VKDF +LS++ +K + K L F LT + + V T I K G Sbjct 2403 IKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGLTFLLTFNDNQAITQVPATSIVAKQG 2461 Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 79/396 (20%), Positives = 137/396 (35%), Gaps = 27/396 (7%) Query 749 TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDT 808 + + T D IN+ VV+ S + G+Q G DG D S EG + N DT Sbjct 1581 NVVLKITEDGINVKDVVVESSKSLGKQLGVVS-DGVD--------SFEGV---LPINTDT 1628 Query 809 LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLTSIKWADNNCYLATALLTLQ 866 + A E F + A K + YP V G + DNNC++ + LQ Sbjct 1629 VLSVAPEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQ 1688 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS- 925 ++ F L + + G+ F + I + G+ GD E +S L ++ DS Sbjct 1689 YLKPTFKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDSI 1748 Query 926 CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 985 C C ++T+ V++ + ++ + G C + + Sbjct 1749 VTLEQYSTCDIC---KSTVVEVKSAIVCASVLKDGCDVGF---CPHRHKLRSRVKFVNGR 1802 Query 986 FVM--MSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKG 1043 V+ + P K + ++G++ GHY + DGA L S Sbjct 1803 VVITNVGEPIISQPSKLLNGIAYTTFSGSFDNGHYV-VYDAANNAVYDGARLFSSDLSTL 1861 Query 1044 PITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP 1103 +T + T+ P V ++D +++ + F I L Sbjct 1862 AVTAIVVVGGCVTSN-VPTIVSEKISVMDKLDTGAQKFFQFGD--FVMNNIVLFLTWLLS 1918 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKV 1139 S + +IK + TG S + + Sbjct 1919 MFSLLRTSIMKHDIKVIAKAPKRTGVILTRSFKYNI 1954 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 126/309 (41%), Gaps = 27/309 (9%) Query 175 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 234 G D + +++ T+ V + ++ EV F+ Y NV DI V Sbjct 1228 GVFDIKNSSVNTVCFVDVDFH---SVEIEAGEVKPFAVYK----NVKFYLGDISHLVNCV 1280 Query 235 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 294 VVNAAN L HGGGVA A++ T +Q S DYI++NGPLKVG +L Sbjct 1281 SFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLECEKF-- 1338 Query 295 HCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 354 + +VVGP K E L+++ ++ + L PLLS GIFG +SL+ Sbjct 1339 NVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIENSLKALFSC---- 1394 Query 355 VYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKI 414 +K + F+ +E+Q K + ++ P I + R + + Sbjct 1395 ---------DINKPLQVFVYSSNEEQAVLKF--LDGLDLTPVIDDVDVVKPFRVEGNFSF 1443 Query 415 KACVEEVTTTLEETKFLTENLLLYIDINGNLHPDS-ATLVSDIDITFLKKDAPYIVGDVV 473 C + L N +L +D G L ++ + +L G++V Sbjct 1444 FDCGVNALDG--DIYLLFTNSILMLDKQGQLLDTKLNGILQQAALDYLATVKTVPAGNLV 1501 Query 474 QEGVLTAVV 482 + V + + Sbjct 1502 KLFVESCTI 1510 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 15/192 (8%) Query 830 SALNHTKKWKYPQVN--GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAG 887 L+ + + + + G+ + +DNNC+++T L+ LQ +L + +Q + G Sbjct 1034 HVLSIKQPFSFSFRDELGVRVLDQSDNNCWISTTLVQLQLTKLLDDSIEMQL----FKVG 1089 Query 888 EAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGV 947 + + + G LGD + +S L + +C + C CG++ G Sbjct 1090 KVDSIVQKCYELSHLISGSLGDSGKLLSELLK--EKYTCSITFEMSCD-CGKKFDDQVG- 1145 Query 948 EAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAP-PAQYELKHGTFTCA 1006 ++ + F+KG C C K T LV + V + P P + C+ Sbjct 1146 --CLFWIMPYTKLFQKG--ECCICHKMQTYKLVSMKGTGVFVQDPAPIDIDAFPVKPICS 1201 Query 1007 SEYTGNYQCGHY 1018 S Y G GHY Sbjct 1202 SVYLGVKGSGHY 1213 >sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus NL63 OX=277944 GN=1a PE=1 SV=1 Length=4060 Score = 524 bits (1350), Expect = 6e-151, Method: Composition-based stats. Identities = 153/659 (23%), Positives = 272/659 (41%), Gaps = 59/659 (9%) Query 1293 NELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMP 1352 ++LS + + G N TI + ++K+ + N + Sbjct 1856 SDLSTLAVTAIVVVGGCVTSN---VPTIVSEKISVMDKLDTGAQKFFQ--FGDFVMNNIV 1910 Query 1353 YFFTLLLQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKL 1408 F T LL + + R++ + ++ A P +S K+ + ++ +K Sbjct 1911 LFLTWLLSMFSLLRTSIMKHDIKVIAKAPKRTGVILTRS-FKYNIRSALFVIKQK----- 1964 Query 1409 INIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSI 1468 +I+ L L ++ + C GY ST YC S+ Sbjct 1965 WCVIV--TLFKFLLLLYAIYALVFMIVQFSPFNSLLCGDIVSGYEKST-FNKDIYCGNSM 2021 Query 1469 PCSVCLSGLDSLDTYPSLETIQITISSF-KWDLTAFGLVAEWFLAYILFTRFFYVLGLAA 1527 C +CL + + I L F ++ + ++ RF + +A Sbjct 2022 VCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPFVILVILLIFGNMYLRFGLLYFVAQ 2081 Query 1528 IMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCN 1587 + F S+ H W + P + ++ + H++ GCN Sbjct 2082 FISTFGSFLGFH--QKQWFLHF-------VPFDVLCNEFLATFIVCKIVLFVRHIIVGCN 2132 Query 1588 SSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFI 1647 ++ C+ C K R RV TI+NG+ +SFYV ANGG FC HN+ CVNCD+F G+TFI Sbjct 2133 NADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKHNFFCVNCDSFGPGNTFI 2192 Query 1648 SDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLD 1707 + ++AR+L K + PT + I+D V NG LY + + S + + Sbjct 2193 NGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLYSGDTFWRYDFDITESKYSCKE 2252 Query 1708 NLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAE 1767 L+ N N IV++ S + K+A VY+SQL+C+PI L++ L+S + S + Sbjct 2253 VLKNCNV----LENFIVYNN-SGSNITQIKNACVYFSQLLCEPIKLVNSELLSTL--SVD 2305 Query 1768 VAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSD 1827 + AYV+ ++F ++L ++ AE + ++ Sbjct 2306 FNGVLHKAYVDVLCNSF---FKELTANMSMAECKATLGLT-------------------- 2342 Query 1828 VETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPRDLGACIDCSARHINAQVA 1886 V D V + +H+ D+ ++ S NN+ ++Y K + ++ D+ C+ ++ +N V Sbjct 2343 VSDDDFVSAVANAHRYDVLLSDLSFNNFFISYAKPEDKLSVYDIACCMRAGSKVVNHNVL 2402 Query 1887 KSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG 1945 +I ++W VKDF +LS++ +K + K L F LT + + V T I K G Sbjct 2403 IKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGLTFLLTFNDNQAITQVPATSIVAKQG 2461 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 79/396 (20%), Positives = 137/396 (35%), Gaps = 27/396 (7%) Query 749 TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDT 808 + + T D IN+ VV+ S + G+Q G DG D S EG + N DT Sbjct 1581 NVVLKITEDGINVKDVVVESSKSLGKQLGVVS-DGVD--------SFEGV---LPINTDT 1628 Query 809 LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLTSIKWADNNCYLATALLTLQ 866 + A E F + A K + YP V G + DNNC++ + LQ Sbjct 1629 VLSVAPEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQ 1688 Query 867 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS- 925 ++ F L + + G+ F + I + G+ GD E +S L ++ DS Sbjct 1689 YLKPTFKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDSI 1748 Query 926 CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 985 C C ++T+ V++ + ++ + G C + + Sbjct 1749 VTLEQYSTCDIC---KSTVVEVKSAIVCASVLKDGCDVGF---CPHRHKLRSRVKFVNGR 1802 Query 986 FVM--MSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKG 1043 V+ + P K + ++G++ GHY + DGA L S Sbjct 1803 VVITNVGEPIISQPSKLLNGIAYTTFSGSFDNGHYV-VYDAANNAVYDGARLFSSDLSTL 1861 Query 1044 PITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP 1103 +T + T+ P V ++D +++ + F I L Sbjct 1862 AVTAIVVVGGCVTSN-VPTIVSEKISVMDKLDTGAQKFFQFGD--FVMNNIVLFLTWLLS 1918 Query 1104 NASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKV 1139 S + +IK + TG S + + Sbjct 1919 MFSLLRTSIMKHDIKVIAKAPKRTGVILTRSFKYNI 1954 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 126/309 (41%), Gaps = 27/309 (9%) Query 175 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 234 G D + +++ T+ V + ++ EV F+ Y NV DI V Sbjct 1228 GVFDIKNSSVNTVCFVDVDFH---SVEIEAGEVKPFAVYK----NVKFYLGDISHLVNCV 1280 Query 235 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 294 VVNAAN L HGGGVA A++ T +Q S DYI++NGPLKVG +L Sbjct 1281 SFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLECEKF-- 1338 Query 295 HCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 354 + +VVGP K E L+++ ++ + L PLLS GIFG +SL+ Sbjct 1339 NVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIENSLKALFSC---- 1394 Query 355 VYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKI 414 +K + F+ +E+Q K + ++ P I + R + + Sbjct 1395 ---------DINKPLQVFVYSSNEEQAVLKFLDGL--DLTPVIDDVDVVKPFRVEGNFSF 1443 Query 415 KACVEEVTTTLEETKFLTENLLLYIDINGNLHPDS-ATLVSDIDITFLKKDAPYIVGDVV 473 C + L N +L +D G L ++ + +L G++V Sbjct 1444 FDCGVNALDG--DIYLLFTNSILMLDKQGQLLDTKLNGILQQAALDYLATVKTVPAGNLV 1501 Query 474 QEGVLTAVV 482 + V + + Sbjct 1502 KLFVESCTI 1510 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 76/192 (40%), Gaps = 15/192 (8%) Query 830 SALNHTKKWKYPQVN--GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAG 887 L+ + + + + G+ + +DNNC+++T L+ LQ +L + +Q + G Sbjct 1034 HVLSIKQPFSFSFRDELGVRVLDQSDNNCWISTTLVQLQLTKLLDDSIEMQL----FKVG 1089 Query 888 EAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGV 947 + + + G LGD + +S L + S + C CG++ G Sbjct 1090 KVDSIVQKCYELSHLISGSLGDSGKLLSELLKEKYTCSIT--FEMSCD-CGKKFDDQVG- 1145 Query 948 EAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAP-PAQYELKHGTFTCA 1006 ++ + F+KG C C K T LV + V + P P + C+ Sbjct 1146 --CLFWIMPYTKLFQKG--ECCICHKMQTYKLVSMKGTGVFVQDPAPIDIDAFPVKPICS 1201 Query 1007 SEYTGNYQCGHY 1018 S Y G GHY Sbjct 1202 SVYLGVKGSGHY 1213 >sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 509 bits (1310), Expect = 9e-146, Method: Composition-based stats. Identities = 152/620 (25%), Positives = 256/620 (41%), Gaps = 84/620 (14%) Query 1345 RVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPN 1404 ++ + F LL+ +S ++K P + +N V + NY++ N Sbjct 1859 KILRFLLEVFKYLLVVFMCLRKSKMPKVKVK-PPHVFRNLGAKV------RTLNYVRQLN 1911 Query 1405 FSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 L I LLL + L Y ++ V+ C+G + Y NS+ + C Sbjct 1912 KPALWRYIKLVLLL-IALYHFFYLFVSIPVVHK-----LACSGSVQAYSNSS-FVKSEVC 1964 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----LTAFGLVAEWFLAYILFTRFF 1520 SI C CL+ D L + L+ S W+ L+ F +A + Y+ + Sbjct 1965 GNSILCKACLASYDELADFDHLQVSWDYKSDPLWNRVIQLSYFIFLAVFGNNYVRCLLMY 2024 Query 1521 YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 ++ + L+ SYF ++ SW + ++V IS + + K Sbjct 2025 ---FVSQYLNLWLSYFG--YVKYSWFL----HVVNFESISVEFVIIVVVFKAVLALK--- 2072 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 H+ CN+ +C C K R TR+ +VNG ++ YV+ANG CK HN+ C NCD++ Sbjct 2073 HIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGKLCKKHNFYCKNCDSY 2132 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY---------FDKAG 1691 TFI DE+ RDLS K+ + TD+S V V +G Y +D Sbjct 2133 GFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYRFYVGEEFTAYDYDVKH 2192 Query 1692 QKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPI 1751 +K + L LD+ N GS +S ++ VY+SQL+ +PI Sbjct 2193 KKYSSQEVLKTMFLLDDFIVYNPSGS--------------SLASVRNVCVYFSQLIGRPI 2238 Query 1752 LLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV 1811 +++ L+ D+ S + +F+A N ++FNV + + K L E K +LD Sbjct 2239 KIVNSELLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL-----EECYKLCNLDVT 2291 Query 1812 LSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV--ENMTPRD 1869 STF A +H+ I +T S NN+ + K ++ D Sbjct 2292 FSTFEMAINN------------------AHRFGILITDRSFNNFWPSKIKPGSSGVSAMD 2333 Query 1870 LGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATT 1929 +G C+ A+ +NA+V +++W +DF +LS +K + + + F LT Sbjct 2334 IGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEEGVNFSLTFNAV 2393 Query 1930 RQVVNVV----TTKIALKGG 1945 ++ T ++ K G Sbjct 2394 GSDEDLPYERFTESVSAKSG 2413 Score = 200 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 62/290 (21%), Positives = 119/290 (41%), Gaps = 25/290 (9%) Query 181 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 240 T +T+VE +E + Q+ + Y V D+ ++P V+V Sbjct 1305 TAKSKTMVEPPVPVEDKCVEDCQSPKDLILPFYK--AGKVSFYQGDLDVLINFLEPDVLV 1362 Query 241 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 300 NAAN L+H GGVA A++ T + S +Y+ ++ + G + + L+ V Sbjct 1363 NAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAV 1422 Query 301 GPNVNKGEDIQLLKSAYENFNQHE-VLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAV 359 GP L + Y+ + + +L PL+S GIF V+ V L Sbjct 1423 GPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFK-------------VKLEVSLQC 1469 Query 360 FDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITESKPSVEQRKQDDKKIKAC 417 K + D+ ++ F+ E+ + IP + + + + + SV K +++K Sbjct 1470 LLKTVTDRDLNVFVYTDQERVTIENFFNGTIPIKVTEDTVNQKRVSVALDKTYGEQLKGT 1529 Query 418 V----EEVTTTLEETKFLTENLLLYIDINGNLH---PDSATLVSDIDITF 460 V ++VT L + E ++ +D++ N + P++A + + Sbjct 1530 VVIKDKDVTNQLPSVSDVGEKVVKALDVDWNAYYGFPNAAAFSASSHDAY 1579 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 66/346 (19%), Positives = 109/346 (32%), Gaps = 36/346 (10%) Query 736 DNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQF-GPTYLDGADVTKIKPHNS 794 D + + TI + T D +N V + TYG+Q G + DVT P S Sbjct 1486 DQERVTIENFFNGTIPIKVTEDTVNQKRVSVALDKTYGEQLKGTVVIKDKDVTNQLPSVS 1545 Query 795 HEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADN 854 G+ L V+ YY + + ++ N K DN Sbjct 1546 DVGEKV-----VKALDVDWNAYYGFPNAAAFSASSH---DAYEFDVVTHNNFIVHKQTDN 1597 Query 855 NCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETM 914 NC++ L LQ+++ + P ++ + + A F ++ T G+ GD T+ Sbjct 1598 NCWVNAICLALQRLKPTWKFPGVKSLWDAFLTRKTAGFVHMLYHISGLTKGQPGDAELTL 1657 Query 915 SYLFQHANLDSCKRVLNVV-CKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGK 973 L + DS V + C C + T G ++ G C G Sbjct 1658 HKLVDLMSSDSAVTVTHTTACDKC-AKVETFTG-------PVVAAPLLVCGTDEICVHGV 1709 Query 974 QATKYLVQQESPFVMMS--APPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCID 1031 + + S P + + C YTG GHY + ++ L D Sbjct 1710 HVNVKVTSIRGTVAITSLIGPVVGDVIDATGYIC---YTGLNSRGHYTYYDNRNGLMV-D 1765 Query 1032 GALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPK 1077 + +T + + EI PK Sbjct 1766 ADKAYHFEKNLLQVTTAI------------ASNFVANTPKKEIMPK 1799 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 120/367 (33%), Gaps = 48/367 (13%) Query 756 VDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFE 815 V ++ T V + +Q + + P L + + + + Sbjct 1025 VSSVEGETVSVVDVEDFVEQVSLVEENNVLTPAVNPDE--------QLSSVEKKDEVSAK 1076 Query 816 YYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPP 875 +K +NG +K DNNC++ LQ + FN Sbjct 1077 NDPWAAAVDEQEAEQPKPSLTPFKTTNLNGKIILKQQDNNCWINACCYQLQAFDF-FN-- 1133 Query 876 ALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCK 935 D + + + F A G+ GD + + + + K L+ C Sbjct 1134 --HDLWDGFKKDDVMPFVDFCYAALTLKQGDSGDAEYLLETMLN--DYSTAKVTLSAKCG 1189 Query 936 TCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPC----TCGKQATKYL-------VQQES 984 CG ++ L+ V + L +FK GV C C + + +++++ Sbjct 1190 -CGVKEIVLE--RTVFKLTPL-RNEFKYGVCGDCKQINMCKFASVEGSGVFVHDRIEKQT 1245 Query 985 PFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGP 1044 P P + + YTG Q GHY YC+DG + K ++K Sbjct 1246 PVSQFIVTPTMHAV----------YTGTTQSGHYMIEDCI-HDYCVDG-MGIKPRKHKFY 1293 Query 1045 ITDVFYKENSYTTTIK-----PVTYKLDGVVCTEIDPKLD-NYYKKDNSYFTEQPIDLVP 1098 + +F N T K PV + V + L +YK F + +D++ Sbjct 1294 TSTLFLNANVMTAKSKTMVEPPVPVEDKCVEDCQSPKDLILPFYKAGKVSFYQGDLDVLI 1353 Query 1099 NQPYPNA 1105 N P+ Sbjct 1354 NFLEPDV 1360 >sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=1a PE=1 SV=1 Length=4017 Score = 507 bits (1305), Expect = 2e-145, Method: Composition-based stats. Identities = 147/612 (24%), Positives = 257/612 (42%), Gaps = 80/612 (13%) Query 1345 RVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPN 1404 ++ + F LL+ + ++K P K+ V + NY++ N Sbjct 1834 KILRLLLEVFKYLLVLFMCLRSTKMPKVKVK-PPLAFKDFGAKV------RTLNYMRQLN 1886 Query 1405 FSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 + LLL + + + Y ++ V+ C G + Y NS+ + C Sbjct 1887 KPSVWRYAKLVLLL-IAIYNFFYLFVSIPVVHK-----LTCNGAVQAYKNSS-FIKSAVC 1939 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----LTAFGLVAEWFLAYILFTRFF 1520 SI C CL+ D L + L+ S W+ L+ F +A + Y+ R F Sbjct 1940 GNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNYV---RCF 1996 Query 1521 YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 + ++ + L+ SYF ++ SW + ++V ISA + + K Sbjct 1997 LMYFVSQYLNLWLSYFG--YVEYSWFL----HVVNFESISAEFVIVVIVVKAVLALK--- 2047 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 H+V C++ +C C + R TR+ +VNG ++ YV+ANG FCK HN+ C NCD++ Sbjct 2048 HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFYCKNCDSY 2107 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY---------FDKAG 1691 +TFI DE+ RDLS K+ + TD+S V V +G Y +D Sbjct 2108 GFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFYVGDEFTSYDYDVKH 2167 Query 1692 QKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPI 1751 +K + L + LD+ + GS NV ++A VY+SQL+ +PI Sbjct 2168 KKYSSQEVLKSMLLLDDFIVYSPSGSALANV--------------RNACVYFSQLIGKPI 2213 Query 1752 LLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV 1811 +++ L+ D+ S + +F+A N ++FNV + + K L E + +L+ Sbjct 2214 KIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL-----DECYRACNLNVS 2266 Query 1812 LSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV--ENMTPRD 1869 STF A +H+ I +T S NN+ + K ++ D Sbjct 2267 FSTFEMAVNN------------------AHRFGILITDRSFNNFWPSKVKPGSSGVSAMD 2308 Query 1870 LGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATT 1929 +G C+ A+ +NA+V +++W +DF +LS +K + + + F LT Sbjct 2309 IGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNAV 2368 Query 1930 RQVVNVVTTKIA 1941 ++ + Sbjct 2369 GSDDDLPYERFT 2380 Score = 216 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 82/409 (20%), Positives = 147/409 (36%), Gaps = 46/409 (11%) Query 56 VVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKL--------ASHMYCSFY 107 +V + + L P+ E G+ D + T G Sbjct 1171 IVLERAVFKLTPLKESFN-YGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVK 1229 Query 108 PPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEE---EQEEDWLDD 164 P G + + D KPL+ ++ L + E + Sbjct 1230 PVMHAVYTGTTQNGHYMVDDIEHGYCVDGMGIKPLKKRCYTSTLFINANVMTRAEKPKQE 1289 Query 165 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKN 224 + V QQ E+N+++ + ++ P+ + + P + +++ + G L + N Sbjct 1290 FKVEKVEQQPIVEENKSSIEKEEIQ-SPKNDDLILPFYKAGKLSFYQGALDVLINF---- 1344 Query 225 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 284 ++P V+VNAAN LKH GGVA A++ T + S DY+ N + G + Sbjct 1345 ---------LEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNA 1395 Query 285 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQH-EVLLAPLLSAGIFGADPIHS 343 L+ VGP L + Y+ + +L PL+S GIF Sbjct 1396 VFFENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIF------- 1448 Query 344 LRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITESK 401 VR L K + D+ ++ F+ E+Q + IP + + + Sbjct 1449 ------NVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHER 1502 Query 402 PSVEQRKQDDKKIKACV----EEVTTTLEETKFLTENLLLYIDINGNLH 446 SV K +++K V ++VT L + + ++ IDI+ H Sbjct 1503 VSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAH 1551 Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 124/352 (35%), Gaps = 62/352 (18%) Query 792 HNSHEGKTFYVLPNDDTL-RVEAFEYYHTTDP----SFLGRYMSALNHTKKWKYPQVNGL 846 + E +T V T V+ E DP + +K +NG Sbjct 1024 SSQEEVETVEVADITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPSLPPFKTTNLNGK 1083 Query 847 TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGE 906 +K DNNC++ LQ + FN +A+ + + G+ +F L A G Sbjct 1084 IILKQGDNNCWINACCYQLQAFDF-FN----NEAWEKFKKGDVMDFVNLCYAATTLARGH 1138 Query 907 LGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQ 966 GD + + + + K VL C CG+++ L+ AV + L E F GV Sbjct 1139 SGDAEYLLELMLN--DYSTAKIVLAAKCG-CGEKEIVLE--RAVFKLTPLK-ESFNYGVC 1192 Query 967 IPC----TCGKQATKY-------LVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQC 1015 C TC + + ++ +++P M P + + YTG Q Sbjct 1193 GDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAV----------YTGTTQN 1242 Query 1016 GHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEID 1075 GHY + E YC+DG + K + + + +F N T KP V E Sbjct 1243 GHY-MVDDIEHGYCVDG-MGIKPLKKRCYTSTLFINANVMTRAEKPKQEF--KVEKVEQQ 1298 Query 1076 PKLDN---------------------YYKKDNSYFTEQPIDLVPNQPYPNAS 1106 P ++ +YK F + +D++ N P+ Sbjct 1299 PIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLEPDVI 1350 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 69/385 (18%), Positives = 119/385 (31%), Gaps = 33/385 (9%) Query 718 YYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQF- 776 L+ V T D + + +I V T DN+N V TYG+Q Sbjct 1458 CLLKTVNDRGLNVFVYT-DQERQTIENFFSCSIPVNVTEDNVNHERVSVSFDKTYGEQLK 1516 Query 777 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK 836 G + DVT P G+ + ++ +Y D + Sbjct 1517 GTVVIKDKDVTNQLPSAFDVGQKVI-----KAIDIDWQAHYGFRDAAAFSASSH---DAY 1568 Query 837 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 896 K++ + K DNNC++ L LQ+++ ++ P ++ + + F ++ Sbjct 1569 KFEVVTHSNFIVHKQTDNNCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHML 1628 Query 897 LAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVV-CKTCGQQQTTLKGVEAVMYMGT 955 GE GD + L + D V + C C + G + Sbjct 1629 YHISGVKKGEPGDAELMLHKLGDLMDNDCEIIVTHTTACDKC-AKVEKFVGPVVAAPLAI 1687 Query 956 LSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMS--APPAQYELKHGTFTCASEYTGNY 1013 G C G + Q + + S P L+ + C Y+G+ Sbjct 1688 -------HGTDETCVHGVSVNVKVTQIKGTVAITSLIGPIIGEVLEATGYIC---YSGSN 1737 Query 1014 QCGHYKH-------ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKL 1066 + GHY + + E Y + LL ++ V K + K+ Sbjct 1738 RNGHYTYYDNRNGLVVDAEKAYHFNRDLLQVTTAIASNF--VVKKPQAEERPKNCAFNKV 1795 Query 1067 DGVVCTEIDPKLDNYYKKDNSYFTE 1091 + KL N TE Sbjct 1796 AASPKIVQEQKLLAIESGANYALTE 1820 >sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 507 bits (1306), Expect = 2e-145, Method: Composition-based stats. Identities = 147/612 (24%), Positives = 257/612 (42%), Gaps = 80/612 (13%) Query 1345 RVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPN 1404 ++ + F LL+ + ++K P K+ V + NY++ N Sbjct 1834 KILRLLLEVFKYLLVLFMCLRSTKMPKVKVK-PPLAFKDFGAKV------RTLNYMRQLN 1886 Query 1405 FSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYC 1464 + LLL + + + Y ++ V+ C G + Y NS+ + C Sbjct 1887 KPSVWRYAKLVLLL-IAIYNFFYLFVSIPVVHK-----LTCNGAVQAYKNSS-FIKSAVC 1939 Query 1465 TGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----LTAFGLVAEWFLAYILFTRFF 1520 SI C CL+ D L + L+ S W+ L+ F +A + Y+ R F Sbjct 1940 GNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNYV---RCF 1996 Query 1521 YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 1580 + ++ + L+ SYF ++ SW + ++V ISA + + K Sbjct 1997 LMYFVSQYLNLWLSYFG--YVEYSWFL----HVVNFESISAEFVIVVIVVKAVLALK--- 2047 Query 1581 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 1640 H+V C++ +C C + R TR+ +VNG ++ YV+ANG FCK HN+ C NCD++ Sbjct 2048 HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFYCKNCDSY 2107 Query 1641 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY---------FDKAG 1691 +TFI DE+ RDLS K+ + TD+S V V +G Y +D Sbjct 2108 GFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFYVGDEFTSYDYDVKH 2167 Query 1692 QKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPI 1751 +K + L + LD+ + GS NV ++A VY+SQL+ +PI Sbjct 2168 KKYSSQEVLKSMLLLDDFIVYSPSGSALANV--------------RNACVYFSQLIGKPI 2213 Query 1752 LLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV 1811 +++ L+ D+ S + +F+A N ++FNV + + K L E + +L+ Sbjct 2214 KIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL-----DECYRACNLNVS 2266 Query 1812 LSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV--ENMTPRD 1869 STF A +H+ I +T S NN+ + K ++ D Sbjct 2267 FSTFEMAVNN------------------AHRFGILITDRSFNNFWPSKVKPGSSGVSAMD 2308 Query 1870 LGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATT 1929 +G C+ A+ +NA+V +++W +DF +LS +K + + + F LT Sbjct 2309 IGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNAV 2368 Query 1930 RQVVNVVTTKIA 1941 ++ + Sbjct 2369 GSDDDLPYERFT 2380 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 82/409 (20%), Positives = 147/409 (36%), Gaps = 46/409 (11%) Query 56 VVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKL--------ASHMYCSFY 107 +V + + L P+ E G+ D + T G Sbjct 1171 IVLERAVFKLTPLKESFN-YGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVK 1229 Query 108 PPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEE---EQEEDWLDD 164 P G + + D KPL+ ++ L + E + Sbjct 1230 PVMHAVYTGTTQNGHYMVDDIEHGYCVDGMGIKPLKKRCYTSTLFINANVMTRAEKPKQE 1289 Query 165 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKN 224 + V QQ E+N+++ + ++ P+ + + P + +++ + G L + N Sbjct 1290 FKVEKVEQQPIVEENKSSIEKEEIQ-SPKNDDLILPFYKAGKLSFYQGALDVLINF---- 1344 Query 225 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 284 ++P V+VNAAN LKH GGVA A++ T + S DY+ N + G + Sbjct 1345 ---------LEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNA 1395 Query 285 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQH-EVLLAPLLSAGIFGADPIHS 343 L+ VGP L + Y+ + +L PL+S GIF Sbjct 1396 VFFENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIF------- 1448 Query 344 LRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITESK 401 VR L K + D+ ++ F+ E+Q + IP + + + Sbjct 1449 ------NVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHER 1502 Query 402 PSVEQRKQDDKKIKACV----EEVTTTLEETKFLTENLLLYIDINGNLH 446 SV K +++K V ++VT L + + ++ IDI+ H Sbjct 1503 VSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAH 1551 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 124/352 (35%), Gaps = 62/352 (18%) Query 792 HNSHEGKTFYVLPNDDTL-RVEAFEYYHTTDP----SFLGRYMSALNHTKKWKYPQVNGL 846 + E +T V T V+ E DP + +K +NG Sbjct 1024 SSQEEVETVEVADITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPSLPPFKTTNLNGK 1083 Query 847 TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGE 906 +K DNNC++ LQ + FN +A+ + + G+ +F L A G Sbjct 1084 IILKQGDNNCWINACCYQLQAFDF-FN----NEAWEKFKKGDVMDFVNLCYAATTLARGH 1138 Query 907 LGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQ 966 GD + + + + K VL C CG+++ L+ AV + L E F GV Sbjct 1139 SGDAEYLLELMLN--DYSTAKIVLAAKCG-CGEKEIVLE--RAVFKLTPLK-ESFNYGVC 1192 Query 967 IPC----TCGKQATKY-------LVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQC 1015 C TC + + ++ +++P M P + + YTG Q Sbjct 1193 GDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAV----------YTGTTQN 1242 Query 1016 GHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEID 1075 GHY + E YC+DG + K + + + +F N T KP V E Sbjct 1243 GHY-MVDDIEHGYCVDG-MGIKPLKKRCYTSTLFINANVMTRAEKPKQEF--KVEKVEQQ 1298 Query 1076 PKLDN---------------------YYKKDNSYFTEQPIDLVPNQPYPNAS 1106 P ++ +YK F + +D++ N P+ Sbjct 1299 PIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLEPDVI 1350 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 69/385 (18%), Positives = 119/385 (31%), Gaps = 33/385 (9%) Query 718 YYTSNPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQF- 776 L+ V T D + + +I V T DN+N V TYG+Q Sbjct 1458 CLLKTVNDRGLNVFVYT-DQERQTIENFFSCSIPVNVTEDNVNHERVSVSFDKTYGEQLK 1516 Query 777 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK 836 G + DVT P G+ + ++ +Y D + Sbjct 1517 GTVVIKDKDVTNQLPSAFDVGQKVI-----KAIDIDWQAHYGFRDAAAFSASSH---DAY 1568 Query 837 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 896 K++ + K DNNC++ L LQ+++ ++ P ++ + + F ++ Sbjct 1569 KFEVVTHSNFIVHKQTDNNCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHML 1628 Query 897 LAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVV-CKTCGQQQTTLKGVEAVMYMGT 955 GE GD + L + D V + C C + G + Sbjct 1629 YHISGVKKGEPGDAELMLHKLGDLMDNDCEIIVTHTTACDKC-AKVEKFVGPVVAAPLAI 1687 Query 956 LSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMS--APPAQYELKHGTFTCASEYTGNY 1013 G C G + Q + + S P L+ + C Y+G+ Sbjct 1688 -------HGTDETCVHGVSVNVKVTQIKGTVAITSLIGPIIGEVLEATGYIC---YSGSN 1737 Query 1014 QCGHYKH-------ITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKL 1066 + GHY + + E Y + LL ++ V K + K+ Sbjct 1738 RNGHYTYYDNRNGLVVDAEKAYHFNRDLLQVTTAIASNF--VVKKPQAEERPKNCAFNKV 1795 Query 1067 DGVVCTEIDPKLDNYYKKDNSYFTE 1091 + KL N TE Sbjct 1796 AASPKIVQEQKLLAIESGANYALTE 1820 >sp|A7MG20|YMDB_CROS8 O-acetyl-ADP-ribose deacetylase OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=ymdB PE=3 SV=1 Length=180 Score = 200 bits (507), Expect = 3e-57, Method: Composition-based stats. Identities = 49/183 (27%), Positives = 78/183 (43%), Gaps = 25/183 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 ++ + + DI + V+VNAAN L GGGV GA+++A A+ Sbjct 1 MSGRINVVQGDIT----LIDVDVIVNAANPSLMGGGGVDGAIHRAAGPALLAACRQVRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGED--IQLLKSAYEN------FNQHEVL 326 G + G + + +L AK +H VGP G+D QLL AY N N + + Sbjct 57 QGECQPGHAVITEAGDLAAKAVVHTVGPVWRGGQDNEPQLLADAYRNSLQLVAANGYNSV 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSSFLE 374 P +S GI+G + ++ +TV VY +D+ LY +L+ + E Sbjct 117 AFPAISTGIYGYPKAAAAQIAFETVSDYLTRHPQPKQVYFVCYDEENFLLYQRLLGQYDE 176 Query 375 MKS 377 Sbjct 177 QPG 179 >sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032) OX=693216 GN=ymdB PE=3 SV=1 Length=176 Score = 198 bits (504), Expect = 6e-57, Method: Composition-based stats. Identities = 48/180 (27%), Positives = 78/180 (43%), Gaps = 25/180 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 ++ + + DI ++ V+VNAAN L GGGV GA+++A ++ Sbjct 1 MSGRINVVQGDIT----RIDTDVIVNAANPSLMGGGGVDGAIHRAAGPSLLAACKVVRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGED--IQLLKSAYEN------FNQHEVL 326 G + G + + +L AK +H VGP G D QLL AY N N + + Sbjct 57 QGECQPGHAVITEAGDLAAKAVIHTVGPIWRGGHDNEPQLLADAYRNSLELVTANGYNSV 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSSFLE 374 P +S GI+G + ++ +TV VY +D+ LY +L+ + E Sbjct 117 AFPAISTGIYGYPKAAAAQIAFETVSDYLTRRPQPKQVYFVCYDEENFLLYQRLLGQYDE 176 >sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=ymdB PE=3 SV=2 Length=177 Score = 195 bits (494), Expect = 1e-55, Method: Composition-based stats. Identities = 47/177 (27%), Positives = 77/177 (44%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++ DI + A V+VNAAN L GGGV GA+++A + Sbjct 1 MKSRIHVLQGDITQLA----VDVIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + NL A+ +H VGP GE + QLL AY N N ++ + Sbjct 57 QGECPTGHAVITIAGNLPARAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + + V TV +Y +D+ LY++L++ Sbjct 117 AFPAISTGVYGFPRAAAAEIAVKTVSDFITRHALPEQIYFVCYDEENSRLYNRLLTQ 173 >sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobacter rodentium (strain ICC168) OX=637910 GN=ymdB PE=3 SV=2 Length=177 Score = 195 bits (494), Expect = 1e-55, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 76/177 (43%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++ + DI A +VNAAN L GGGV GA+++A + Sbjct 1 MNSRIHVIHGDITTVA----VDAIVNAANPSLMGGGGVDGAIHRAAGPELLEACMTVRRQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + + L AK +H VGP GE + QLL AY N N ++ + Sbjct 57 QGECPPGHAVITAAGRLPAKAVIHTVGPIWRGGEHNEAQLLHDAYLNSLNLALANGYQSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + + V+T+ +Y +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVNTISEFITRRASPEQIYFVCYDEETTRLYQRLLTQ 173 >sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonella newport (strain SL254) OX=423368 GN=ymdB PE=3 SV=1 Length=179 Score = 194 bits (493), Expect = 2e-55, Method: Composition-based stats. Identities = 47/177 (27%), Positives = 75/177 (42%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + + V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEIAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQ 173 >sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonella agona (strain SL483) OX=454166 GN=ymdB PE=3 SV=1 Length=179 Score = 194 bits (493), Expect = 2e-55, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 76/177 (43%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G + G + + L AK +H VGP GE + +LL++AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEYQEAELLEAAYRNCLLLAEANHFRSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQ 173 >sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=ymdB PE=3 SV=1 Length=179 Score = 194 bits (492), Expect = 3e-55, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQ 173 >sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonella typhi OX=90370 GN=ymdB PE=3 SV=1 Length=179 Score = 194 bits (492), Expect = 3e-55, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQ 173 >sp|B5RBF3|YMDB_SALG2 O-acetyl-ADP-ribose deacetylase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=ymdB PE=3 SV=1 Length=179 Score = 192 bits (488), Expect = 8e-55, Method: Composition-based stats. Identities = 47/177 (27%), Positives = 75/177 (42%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G + G + + L AK +H VGP GE + +LL+ AY + N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRSCLLLAEANHFRSI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQ 173 >sp|P0A8D6|YMDB_ECOLI O-acetyl-ADP-ribose deacetylase OS=Escherichia coli (strain K12) OX=83333 GN=ymdB PE=1 SV=1 Length=177 Score = 190 bits (483), Expect = 4e-54, Method: Composition-based stats. Identities = 49/177 (28%), Positives = 78/177 (44%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++ DI + A V+VNAAN L GGGV GA+++A A+ Sbjct 1 MKTRIHVVQGDITKLA----VDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + +L AK +H VGP GE + QLL+ AY N N + + Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + + V TV VY +D+ LY++L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 >sp|P0A8D7|YMDB_ECOL6 O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ymdB PE=3 SV=1 Length=177 Score = 190 bits (483), Expect = 4e-54, Method: Composition-based stats. Identities = 49/177 (28%), Positives = 78/177 (44%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++ DI + A V+VNAAN L GGGV GA+++A A+ Sbjct 1 MKTRIHVVQGDITKLA----VDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + +L AK +H VGP GE + QLL+ AY N N + + Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + + V TV VY +D+ LY++L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 >sp|P0A8D8|YMDB_ECO57 O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O157:H7 OX=83334 GN=ymdB PE=3 SV=1 Length=177 Score = 190 bits (483), Expect = 4e-54, Method: Composition-based stats. Identities = 49/177 (28%), Positives = 78/177 (44%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++ DI + A V+VNAAN L GGGV GA+++A A+ Sbjct 1 MKTRIHVVQGDITKLA----VDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + +L AK +H VGP GE + QLL+ AY N N + + Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + + V TV VY +D+ LY++L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 >sp|A8AI35|YMDB_CITK8 O-acetyl-ADP-ribose deacetylase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=ymdB PE=3 SV=1 Length=177 Score = 190 bits (482), Expect = 5e-54, Method: Composition-based stats. Identities = 47/177 (27%), Positives = 79/177 (45%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++++ DI + + V+VNAAN L GGGV GA+++A + Sbjct 1 MKSRIHVQHGDITQ----LTVDVIVNAANASLLGGGGVDGAIHRAAGPTLLEACKKVRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + NL AK +H VGP G+ + QLL+ AY N N + + Sbjct 57 QGECPAGHAVITLAGNLPAKAVIHTVGPVWRGGDHNESQLLEDAYFNSLQLVLANGYRSV 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G +G + + V+TV VY +D+ LY++L++ Sbjct 117 AFPAISTGAYGYPRPAAAEIAVNTVADFLARHALPEQVYFVCYDEETARLYERLLTQ 173 >sp|Q0T5Z6|YMDB_SHIF8 O-acetyl-ADP-ribose deacetylase OS=Shigella flexneri serotype 5b (strain 8401) OX=373384 GN=ymdB PE=3 SV=1 Length=177 Score = 189 bits (479), Expect = 1e-53, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 77/177 (44%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++ DI + A V+VNAAN L GGGV GA+++A A+ Sbjct 1 MKTRIHVVQGDITKLA----VDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + +L AK +H VGP GE + QLL+ AY N N + + Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++ + + V TV VY +D+ LY++L++ Sbjct 117 AFPAISTGVYSYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 >sp|A4W960|YMDB_ENT38 O-acetyl-ADP-ribose deacetylase OS=Enterobacter sp. (strain 638) OX=399742 GN=ymdB PE=3 SV=1 Length=180 Score = 185 bits (469), Expect = 3e-52, Method: Composition-based stats. Identities = 47/175 (27%), Positives = 75/175 (43%), Gaps = 25/175 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + + + DI ++ V+VNAAN L GGGV GA+++A + Sbjct 1 MKPQIEVVVGDITT----MEVDVIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + +L AK +H VGP GE + + L+ AY N N ++ L Sbjct 57 QGECAPGHAVITIAGDLPAKAVIHAVGPVWQGGENHEARTLQDAYLNCLRLAAANGYKTL 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLV 369 P +S G++G + + VDTV VY +D+ LY +L+ Sbjct 117 AFPAISTGVYGYPKAAAAEIAVDTVSEFLTRKPLPERVYFVCYDEENAQLYQRLL 171 >sp|D5CE05|YMDB_ENTCC O-acetyl-ADP-ribose deacetylase OS=Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56) OX=716541 GN=ymdB PE=3 SV=1 Length=180 Score = 185 bits (469), Expect = 3e-52, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 76/177 (43%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + + + + DI + V+VNAAN L GGGV GA+++A + Sbjct 1 MKPQIDVIHGDITT----MHVDVIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + +L AK +H VGP + G+ + +L+ AY N N ++ + Sbjct 57 QGECPPGHAVITLAGDLPAKAVIHAVGPIWHGGDRHEASILEEAYRNCLRLAADNGYKTM 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + + VDTV V FD+ LY +L++ Sbjct 117 AFPAISTGVYGYPKAAAATIAVDTVYRYLSLKPMPEKVTFVCFDEETLHLYQRLLTQ 173 >sp|Q32E73|YMDB_SHIDS O-acetyl-ADP-ribose deacetylase OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=ymdB PE=3 SV=1 Length=177 Score = 184 bits (467), Expect = 5e-52, Method: Composition-based stats. Identities = 47/177 (27%), Positives = 76/177 (43%), Gaps = 25/177 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +++ DI + A V+VN N L GGGV GA+++A A+ Sbjct 1 MKTRIHVVQGDITKLA----VDVIVNVTNPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 326 G G + + +L AK +H VGP GE + QLL+ AY N N + + Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 371 P +S G++G + + V TV VY +D+ LY++L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 >sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiella variicola (strain At-22) OX=640131 GN=ymdB PE=3 SV=1 Length=175 Score = 184 bits (467), Expect = 6e-52, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 75/172 (44%), Gaps = 25/172 (15%) Query 222 IKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKV 281 + DI ++ V+VNAAN L GGGV GA+++A A+ + G Sbjct 7 VILGDITT----LEVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPP 62 Query 282 GGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPLLS 332 G + + +L A +H VGP + G+ + Q L AY+N N + + P +S Sbjct 63 GHAVITIAGDLPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAIS 122 Query 333 AGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSSF 372 G++G + + V TV V FD+ +Y +L++S+ Sbjct 123 TGVYGYPKEEAAEIAVRTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASY 174 >sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=ymdB PE=3 SV=1 Length=175 Score = 184 bits (467), Expect = 6e-52, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 75/172 (44%), Gaps = 25/172 (15%) Query 222 IKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKV 281 + DI ++ V+VNAAN L GGGV GA+++A A+ + G Sbjct 7 VILGDITT----LEVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPP 62 Query 282 GGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPLLS 332 G + + +L A +H VGP + G+ + Q L AY+N N + + P +S Sbjct 63 GHAVITIAGDLPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAIS 122 Query 333 AGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSSF 372 G++G + + V TV V FD+ +Y +L++S+ Sbjct 123 TGVYGYPKEEAAEIAVRTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASY 174 >sp|E1SDF1|YMDB1_PANVC O-acetyl-ADP-ribose deacetylase 1 OS=Pantoea vagans (strain C9-1) OX=712898 GN=ymdB1 PE=3 SV=1 Length=171 Score = 180 bits (457), Expect = 8e-51, Method: Composition-based stats. Identities = 47/170 (28%), Positives = 76/170 (45%), Gaps = 22/170 (13%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 277 + + DI + V +VNAAN L GGGV GA+++A + E G Sbjct 2 KKITVIQGDITK----VSAEAIVNAANSSLLGGGGVDGAIHRAGGPVILAECQLIRNRQG 57 Query 278 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYEN------FNQHEVLLA 328 KVG + + NL A + +H VGP + G ++ LLK AY++ ++ + + Sbjct 58 GCKVGDAVITGAGNLPADYVIHTVGPRWSDGRHDEDALLKRAYQSCFKLVDYHGIKTVSF 117 Query 329 PLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLYDKLV 369 P +S GI+G + + +D ++ NV L FD YD + Sbjct 118 PNISTGIYGFPKERAATIALDVIKHCIAENRTLENVNLVCFDAENYDLYL 167 >sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) OX=189518 GN=LA_4133 PE=4 SV=1 Length=175 Score = 176 bits (447), Expect = 3e-49, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 81/178 (46%), Gaps = 25/178 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + + + + DI + ++ +VNAAN L GGGV GA+++A + E Sbjct 1 MNNKIKLIKEDITQ----LEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREK 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYEN----FNQH--EVL 326 G KVG + + + L AK +H VGP + G + +LL +AY+N H + + Sbjct 57 QGECKVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFD---KNLYDKLVSSF 372 P +S GI+ + ++ + +V V+ FD +Y+KL+ ++ Sbjct 117 AFPNISTGIYHFPKERAAKIAIQSVTEFLKQDNQIQTVFFVCFDFENLEIYNKLLQTY 174 >sp|Q72M93|Y3295_LEPIC Macro domain-containing protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=LIC_13295 PE=4 SV=1 Length=175 Score = 176 bits (446), Expect = 3e-49, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 81/178 (46%), Gaps = 25/178 (14%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + + + + DI + ++ +VNAAN L GGGV GA+++A + E Sbjct 1 MNNKIKLIKEDITQ----LEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREK 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYEN----FNQH--EVL 326 G KVG + + + L AK +H VGP + G + +LL +AY+N H + + Sbjct 57 QGECKVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFD---KNLYDKLVSSF 372 P +S GI+ + ++ + +V V+ FD +Y+KL+ ++ Sbjct 117 AFPNISTGIYHFPKERAAKIAIQSVTKFLKQDNQIQTVFFVCFDFENLEIYNKLLQTY 174 >sp|Q96XY5|Y2383_SULTO Uncharacterized protein STK_23830 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=STK_23830 PE=4 SV=1 Length=182 Score = 171 bits (432), Expect = 3e-47, Method: Composition-based stats. Identities = 53/184 (29%), Positives = 85/184 (46%), Gaps = 22/184 (12%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V I DI E ++ +VNAAN YL+HGGGVA A+ + +Q ES +Y+ GP+ Sbjct 3 VKIIKGDITE----IEAEAIVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPV 58 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENF------NQHEVLLAPLLS 332 GG V S L AK+ +H VGP E + L+ A N + + P +S Sbjct 59 PTGGVAVTSAGKLKAKYVIHAVGPRYGI-EGEEKLEEAIRNALRKAEELKLSSIALPAIS 117 Query 333 AGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSSF-LEMKSEKQVE 382 GI+G V ++ + ++++ + Y+ V+ F E+ EK + Sbjct 118 TGIYGYPYEICAEKMVKVIKEEYTNFKHLNTIIVSLYSEEAYNIFVNIFERELAKEKNIT 177 Query 383 QKIA 386 K++ Sbjct 178 LKMS 181 >sp|Q8RB30|Y995_CALS4 Macro domain-containing protein TTE0995 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=TTE0995 PE=4 SV=1 Length=175 Score = 168 bits (424), Expect = 3e-46, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 21/179 (12%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + + + + +IV++ + +VNAAN L GGGV GA++KA A+ E Sbjct 1 MKEKIKLIKGNIVDQ----EVDAIVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREK 56 Query 276 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNV--NKGEDIQLLKSAY----ENFNQH--EVL 326 G G + + NL AK+ +H VGP + LL SAY + +++ + + Sbjct 57 QGGCPTGHAVITGAGNLKAKYVIHAVGPIWKGGNHNEDNLLASAYIESLKLADEYNVKTI 116 Query 327 LAPLLSAGIFGADPIHSLRVCVDTVR--------TNVYLAVFDKNLYDKLVSSFLEMKS 377 P +S G +G + R+ + V V +F Y+ ++ E+ Sbjct 117 AFPSISTGAYGFPVERAARIALRVVSDYLEGSSIKEVRFVLFSDRDYEVYSKAYEELDK 175 >sp|Q97UU4|Y2899_SACS2 Uncharacterized protein SSO2899 OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=SSO2899 PE=4 SV=1 Length=177 Score = 167 bits (423), Expect = 5e-46, Method: Composition-based stats. Identities = 49/171 (29%), Positives = 83/171 (49%), Gaps = 17/171 (10%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 +Y+ DI E ++ +VNAAN YL+HGGGVA A+ + +Q ESD+Y+ GP+ Sbjct 10 IYLIKGDITE----IEADAIVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFGPV 65 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHE-----VLLAPLLSA 333 VG V S L AK+ +H VGP + +L + +++ + + + P +S Sbjct 66 PVGEVAVTSAGKLKAKYVIHAVGPRYGIEGEDKLESAIFKSLLKADELSLSSIAMPAIST 125 Query 334 GIFGADPIHSLRVCVDTVR-------TNVYLAVFDKNLYDKLVSSFLEMKS 377 GI+G R+ + ++ V + ++ K+ YD S F + Sbjct 126 GIYGYPFEICARIMANVLKGYKPKTLRKVMICLYTKDAYDVFKSIFNSILK 176 >sp|E1PL40|YMDB2_PANVC O-acetyl-ADP-ribose deacetylase 2 OS=Pantoea vagans (strain C9-1) OX=712898 GN=ymdB2 PE=3 SV=1 Length=171 Score = 166 bits (420), Expect = 9e-46, Method: Composition-based stats. Identities = 44/170 (26%), Positives = 71/170 (42%), Gaps = 22/170 (13%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 277 + + + DI A ++N AN L GGGV GA+++A + E + G Sbjct 2 NKITVIQGDITNIAS----EAIINVANSSLLGGGGVDGAIHRAGGPVILAECQAIRSRQG 57 Query 278 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG---EDIQLLK---SAYENFNQHEV--LLA 328 KVG + + L A + +H VGP + G ED QL S ++ H + + Sbjct 58 GCKVGEAVITGAGTLPADYVIHTVGPRWSDGRHNEDTQLKSVYLSCFKLVGHHGIKTVSF 117 Query 329 PLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLYDKLV 369 P +S GI+G + + +D ++ V L FD YD + Sbjct 118 PNISTGIYGFPKKRAAAIALDVIKHCIAENRTIEKVNLVCFDAENYDLYL 167 >sp|Q8ZXT3|Y1111_PYRAE Uncharacterized protein PAE1111 OS=Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2) OX=178306 GN=PAE1111 PE=4 SV=1 Length=182 Score = 164 bits (416), Expect = 5e-45, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 77/169 (46%), Gaps = 21/169 (12%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V + DI E V+ +VNAAN YL+HGGGVAGA+ + +Q ES +++ +GP+ Sbjct 10 VVLMRGDITE----VEADAIVNAANSYLEHGGGVAGAIVRKGGQVIQEESREWVRKHGPV 65 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHE------VLLAPLLS 332 VG V S L AK+ +H VGP E I+ L A +N + P +S Sbjct 66 PVGDVAVTSAGRLKAKYVIHAVGPRCG-VEPIEKLAEAVKNALLKAEELGLVSIALPAIS 124 Query 333 AGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSSF 372 GIFG + +R + + ++ + Y K + F Sbjct 125 TGIFGCPYDAAAEQMATAIREVAPALRSIRRILVVLYGEEAYQKFLEVF 173 >sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) OX=188937 GN=MA_1614 PE=4 SV=1 Length=195 Score = 164 bits (416), Expect = 7e-45, Method: Composition-based stats. Identities = 48/202 (24%), Positives = 82/202 (41%), Gaps = 29/202 (14%) Query 196 MELTPVVQTIEVNSFSGYLKLTDN---VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG 252 P + ++ NS L ++ N + I DI E +K +VNAAN L GGG Sbjct 2 DPQKPYKKELKRNSRKRSLNMSQNSERIRIIERDITE----LKVDAIVNAANNTLLGGGG 57 Query 253 VAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--D 309 V GA+++A + E G + + G+ L AK+ +H VGP +G + Sbjct 58 VDGAIHRAAGPGLLEECRTLN----GCPTGEAKITKGYLLPAKYVIHTVGPIWQEGTKGE 113 Query 310 IQLLKSAYEN----FNQHE--VLLAPLLSAGIFGADPIHSLRVCVDTVR---------TN 354 + L S Y +++ + P +S G +G + R+ V V+ Sbjct 114 DEFLASCYRKSLELARKYDVKTIAFPTISTGAYGFPSERAARIAVSQVKEFLKVNELPEI 173 Query 355 VYLAVFDKNLYDKLVSSFLEMK 376 V+L ++K + + E Sbjct 174 VFLVCYNKEACKNIKKALEENL 195 >sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=CT2219 PE=4 SV=1 Length=172 Score = 163 bits (411), Expect = 2e-44, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 74/178 (42%), Gaps = 31/178 (17%) Query 216 LTDNV--YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 273 + DNV + ADI + +VNAAN L GGGV GA+++A + + Sbjct 1 MPDNVLIHAIKADITS----LTVDAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACREL- 55 Query 274 ATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENFNQ------HE 324 G G + + G+ L A +H VGP + G + +LL S Y N + Sbjct 56 ---GGCLTGEAKITKGYRLPATFVIHTVGPVWHGGNHGEAELLASCYRNSLKLAIEHHCR 112 Query 325 VLLAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVF---DKNLYDKLVS 370 + P +S GI+G + + + TVR V F D ++Y K ++ Sbjct 113 TIAFPSISTGIYGYPVEQAAAIAITTVREMLADERGIEKVIFCCFSDRDLDVYQKALA 170 >sp|Q8Q0F9|Y177_METMA Macro domain-containing protein MM_0177 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) OX=192952 GN=MM_0177 PE=4 SV=1 Length=187 Score = 163 bits (412), Expect = 2e-44, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 73/164 (45%), Gaps = 26/164 (16%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 277 D + I DIV+ ++ +VNAAN L GGGV GA+++A A+ E Sbjct 19 DRIRIFEGDIVK----MRVDAIVNAANNTLLGGGGVDGAIHRAAGPALLEECKTLN---- 70 Query 278 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLA 328 G + + SG+ L AK+ +H VGP GE + +LL S Y + + + Sbjct 71 GCPTGEAKITSGYLLPAKYIIHTVGPVWQGGEKGEDELLASCYRKSLELARDYKIKTIAF 130 Query 329 PLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN 363 P +S G +G + + V V+ VYL ++K+ Sbjct 131 PAISTGAYGFPSERAAGIAVSQVKEFLQKNEIPETVYLVCYNKD 174 >sp|Q93SX7|Y189_ACISE Macro domain-containing protein OS=Acinetobacter sp. (strain ED45-25) OX=194927 PE=4 SV=1 Length=183 Score = 159 bits (402), Expect = 4e-43, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 69/179 (39%), Gaps = 22/179 (12%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 277 V++ ADI A +VN+AN L GGG+ ++K M+ E G Sbjct 2 KKVHLIQADITAFAVH----AIVNSANKSLLGGGGLDYVIHKKAGPLMKEECVRLNQEKG 57 Query 278 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENFN------QHEVLLA 328 G + V + NL AK+ +H VGP GE + QLL AY N + Sbjct 58 GCPTGQAEVTTAGNLPAKYLIHAVGPRWLDGEHNEPQLLCDAYSNALFKANEIHALTVSF 117 Query 329 PLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSSFLEMKSE 378 P +S G++G P + + + T+ + V+ + Y + + Sbjct 118 PCISTGVYGFPPQKAAEIAIGTILSMLPQYDHVAEVFFICREDENYLIYKNILSNIDDP 176 >sp|Q4J9D2|Y1252_SULAC Uncharacterized protein Saci_1252 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=Saci_1252 PE=4 SV=1 Length=181 Score = 158 bits (399), Expect = 7e-43, Method: Composition-based stats. Identities = 47/170 (28%), Positives = 77/170 (45%), Gaps = 17/170 (10%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V ++N DI + V+ +VNAAN YL HGGGVA A+ ++ +Q ESD+Y+ NGP+ Sbjct 13 VILENGDITK----VEADAIVNAANSYLSHGGGVALAIVRSGGYIIQEESDEYVRRNGPV 68 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHE-----VLLAPLLSA 333 VG V + L A++ +H VGP D +L + + + + + P +S Sbjct 69 PVGEVAVTTAGKLKARYVIHAVGPRYGIEGDDKLESAIRRSLEKADELKLSSIALPAIST 128 Query 334 GIFGADPIHSLRVCVDTVRT-------NVYLAVFDKNLYDKLVSSFLEMK 376 GI+G R+ ++ + + V+ Y F Sbjct 129 GIYGYPYEICARIMSKVMKEYKPKFLKRILVVVYGDQAYSVFKKVFDNSL 178 >sp|Q9ZBG3|Y6450_STRCO Macro domain-containing protein SCO6450 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=SCO6450 PE=4 SV=1 Length=169 Score = 156 bits (393), Expect = 4e-42, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 20/167 (12%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN--G 277 + + DI + +VNAAN L GGGV GA+++ A+ E A + Sbjct 4 ITLVQGDITRQ----SADAIVNAANSSLLGGGGVDGAIHRRGGPAILAECRRLRAGHLGK 59 Query 278 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-LLKSAYENFNQ------HEVLLAP 329 L G + + +L A+ +H VGP + ED LL S Y + + P Sbjct 60 GLPTGRAVATTAGDLDARWVIHTVGPVWSATEDRSGLLASCYRESLRTADELGARTVAFP 119 Query 330 LLSAGIFGADPIHSLRVCVDTVR------TNVYLAVFDKNLYDKLVS 370 +S G++ + R+ V+TV T + +FD Y+ + Sbjct 120 AISTGVYRWPMDDAARIAVETVATTKTSVTEIRFVLFDARAYEAFAA 166 >sp|Q9KHE2|Y189_STRGR Macro domain-containing protein in non 5'region OS=Streptomyces griseus OX=1911 PE=4 SV=1 Length=177 Score = 154 bits (388), Expect = 2e-41, Method: Composition-based stats. Identities = 43/173 (25%), Positives = 68/173 (39%), Gaps = 21/173 (12%) Query 213 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 272 ++ V + DI ++ V+VNAAN L GGGV GA+++ + + Sbjct 2 STSVSPVVRLVRGDITDQ----SVDVIVNAANSSLLGGGGVDGAIHRRGGPDILAACREL 57 Query 273 IATN--GPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGED-IQLLKSAYE------NFNQ 322 A+ L G + + L A+ +H VGP + +D LL S Y Sbjct 58 RASRYGKGLPTGQAVATTAGRLDARWIVHTVGPVFSGAQDRSALLASCYRESLRLAAELG 117 Query 323 HEVLLAPLLSAGIFGADPIHSLRVCVDTV-------RTNVYLAVFDKNLYDKL 368 + P +S GI+G R+ V TV V +FD + Y + Sbjct 118 ARSIAFPAISTGIYGWPMDDGARIAVRTVLAETVEPVEEVRFVLFDAHAYVEF 170 >sp|Q9EYI6|Y189_STRNO Macro domain-containing protein in sno 5'region OS=Streptomyces nogalater OX=38314 PE=4 SV=1 Length=181 Score = 154 bits (388), Expect = 2e-41, Method: Composition-based stats. Identities = 46/165 (28%), Positives = 70/165 (42%), Gaps = 20/165 (12%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI-ATNGP 278 + + DI + +VNAAN L GGGV GA+++ A+ E + G Sbjct 4 ITLVQGDITRQ----HADALVNAANSSLLGGGGVDGAIHRRGGPAILAECRALRASRYGE 59 Query 279 -LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGED-IQLLKSAYENFNQ------HEVLLAP 329 L G + + +L A+ +H VGP + ED LL S Y + + P Sbjct 60 GLPTGRAVATTAGDLDARWVIHTVGPVWSSTEDRSDLLASCYRESLRLAGELGARTVAFP 119 Query 330 LLSAGIFGADPIHSLRVCVDTVRT------NVYLAVFDKNLYDKL 368 LS G++ + R+ V+TVRT V +FD + YD Sbjct 120 ALSTGVYRWPMGDAARIAVETVRTTPTAVEEVRFVLFDTHAYDTF 164 >sp|Q7MTZ7|MACRO_PORGI Macro domain-containing protein PG1779 OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) OX=242619 GN=PG_1779 PE=2 SV=1 Length=164 Score = 152 bits (384), Expect = 5e-41, Method: Composition-based stats. Identities = 39/170 (23%), Positives = 71/170 (42%), Gaps = 24/170 (14%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 277 + I DI + + +VNAAN L GGGV GA+++A + E Sbjct 2 GKITITVGDIT----RFEGDAIVNAANHTLLGGGGVDGAIHRAAGPELLEECRTLN---- 53 Query 278 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLA 328 G S + G+NL A++ +H VGP + G+ + +LL S Y + + Sbjct 54 GCPTGESKITGGYNLPAQYVIHTVGPVWHGGQHGEPELLASCYRTSLSIALDKGLKSIAF 113 Query 329 PLLSAGIFGADPIHSLRVCVDTVRT-------NVYLAVFDKNLYDKLVSS 371 P +S G++ + R+ + T+ +V + F + + ++ Sbjct 114 PCISTGVYRYPKDQAARIALATIGEIIADRPIDVTIVCFSEADKEFYITQ 163 >sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VPA0103 PE=4 SV=1 Length=170 Score = 149 bits (376), Expect = 6e-40, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 68/155 (44%), Gaps = 14/155 (9%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG-P 278 + + DI +VNAAN + GGGV GA+++A A+ +G Sbjct 4 ISLVQGDITT----AHVDAIVNAANPRMLGGGGVDGAIHRAAGPALINACYAVDDVDGIR 59 Query 279 LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-LLKSAYEN------FNQHEVLLAPL 330 G + + NL A++ +H VGP +K D + +L+SAY+ N + + P Sbjct 60 CPFGDARITEAGNLNARYVIHAVGPIYDKFADPKTVLESAYQRSLDLALANHCQSVALPA 119 Query 331 LSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLY 365 +S G++G P + V + + Y A D Y Sbjct 120 ISCGVYGYPPQEAAEVAMAVCQRPEY-AALDMRFY 153 >sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=PA3693 PE=4 SV=1 Length=173 Score = 149 bits (376), Expect = 8e-40, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 73/180 (41%), Gaps = 30/180 (17%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V + DI ++ +VNAAN L GGGV GA+++A + +G Sbjct 4 VRVWQGDIT----RLAVDAIVNAANSSLLGGGGVDGAIHRAAGAELVAACRLL---HG-C 55 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPL 330 K G + + G L A H +H VGP G+ + +LL S Y + P Sbjct 56 KTGEAKITRGFRLPAAHVIHTVGPVWRGGDNGEAELLASCYRRSLALAEQAGAASVAFPA 115 Query 331 LSAGIFGADPIHSLRVCVDTV---------RTNVYLAVFDKNLYDKLVSSFLEMKSEKQV 381 +S GI+G + + V+ V + L FD ++ ++ + + E+ V Sbjct 116 ISCGIYGYPLEQAAAIAVEEVCRQRPAHSSLEEIVLVAFDSSMAER----YQRLLGERPV 171 >sp|Q8Y2K1|Y334_RALN1 Macro domain-containing protein RSc0334 OS=Ralstonia nicotianae (strain GMI1000) OX=267608 GN=RSc0334 PE=4 SV=1 Length=171 Score = 149 bits (376), Expect = 9e-40, Method: Composition-based stats. Identities = 46/165 (28%), Positives = 73/165 (44%), Gaps = 26/165 (16%) Query 224 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 283 ADI A +VNAAN L GGGV GA+++A + +G + G Sbjct 12 RADITTLA----CDAIVNAANSALLGGGGVDGAIHRAAGPELLEACRAL---HG-CRTGQ 63 Query 284 SCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYEN----FNQHE--VLLAPLLSAG 334 + + G L A++ +H VGP G ++ LL + Y N QH+ + P +S G Sbjct 64 AKITPGFLLPARYIIHTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTG 123 Query 335 IFGADPIHSLRVCVDTVRT------NVYLAVF---DKNLYDKLVS 370 ++G P + + V TVR ++ F D LY+ ++ Sbjct 124 VYGFPPQLAAPIAVRTVREHGADLDDIVFCCFSAADLALYETALN 168 >sp|Q9WYX8|Y508_THEMA Uncharacterized protein TM_0508 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0508 PE=3 SV=1 Length=599 Score = 161 bits (406), Expect = 1e-39, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 15/157 (10%) Query 205 IEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNA 264 EV Y + I DI E + +VNAAN YLKHGGGVAGA+ +A + Sbjct 416 AEVRKELEYKG--KKIRIVKGDITRE----EVDAIVNAANEYLKHGGGVAGAIVRAGGSV 469 Query 265 MQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNK---GEDIQLLKSAYENF 320 +Q ESD + G + G + V S L AK+ +H VGP GED L K+ Y Sbjct 470 IQEESDRIVQERGRVPTGEAVVTSAGKLKAKYVIHTVGPVWRGGSHGEDELLYKAVYNAL 529 Query 321 -----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVR 352 + + + P +S GIFG ++ + +R Sbjct 530 LRAHELKLKSISMPAISTGIFGFPKERAVGIFSKAIR 566 >sp|Q97AU0|Y719_THEVO Uncharacterized protein TV0719 OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) OX=273116 GN=TV0719 PE=4 SV=1 Length=186 Score = 147 bits (371), Expect = 6e-39, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 69/169 (41%), Gaps = 22/169 (13%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP- 278 + I DI + V +VNAAN L GGGV GA++ + +E + T P Sbjct 11 IEIIEGDITD----VNCEAIVNAANPSLMGGGGVDGAIHLKGGKTIDLECAELRRTKWPK 66 Query 279 -LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ--LLKSAYEN-----FNQHEVLLAP 329 L G + + SG L AK+ +H VGP E+ L S Y + + + + P Sbjct 67 GLPPGEADITSGGKLKAKYVIHTVGPIYRGQEEDAETLYSSYYRSLEIAKIHGIKCIAFP 126 Query 330 LLSAGIFGADPIHSLRVCVDTVRT--------NVYLAVFDKNLYDKLVS 370 +S GI+G + + + V + ++ + Y VS Sbjct 127 AISTGIYGYPFEEASVIALKAVTDFLSNKEGYIIKFVLYGQARYQTFVS 175 >sp|Q8Y3S3|Y2759_LISMO Macro domain-containing protein lmo2759 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=lmo2759 PE=4 SV=1 Length=176 Score = 146 bits (369), Expect = 7e-39, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 75/175 (43%), Gaps = 27/175 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 + I DI E+ + V+VNAAN L GGGV GA+++A + E + I G Sbjct 3 ITIVKGDITEQ----EVDVIVNAANSGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSC 58 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAY------ENFNQHEVLLAPL 330 G + + S +L A + +H VGP GE + L S Y + P Sbjct 59 PAGEAVITSAGDLKATYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPN 118 Query 331 LSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKN---LYDKLVSS 371 +S G++G + V + TVR + FD+ LY+KL++S Sbjct 119 ISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIKEIRFVCFDEENLKLYNKLINS 173 >sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=XCC3184 PE=4 SV=1 Length=179 Score = 146 bits (369), Expect = 9e-39, Method: Composition-based stats. Identities = 38/167 (23%), Positives = 66/167 (40%), Gaps = 24/167 (14%) Query 219 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY--IATN 276 + + DI + + V+VNAAN L GGGV GA+++A + + + Sbjct 2 RIEVWQGDITQ----LDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPG 57 Query 277 GPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHE------VLL 327 G + G +L A+H H VGP G + + L + Y + + Sbjct 58 VRCPTGEIRITDGFDLKARHIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIA 117 Query 328 APLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLY 365 P +S GI+G + R+ V R ++ L +++ Y Sbjct 118 FPAISCGIYGYPLYQAARIAVTETRDWQRSHKVPKHIVLVAYNEATY 164 >sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=XAC3343 PE=4 SV=2 Length=179 Score = 146 bits (368), Expect = 1e-38, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 66/167 (40%), Gaps = 24/167 (14%) Query 219 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY--IATN 276 + + DI E + V+VNAAN L GGGV GA+++A + + + Sbjct 2 RIEVWQGDITE----LDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPQVRPG 57 Query 277 GPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHE------VLL 327 G + G +L A+H H VGP G + + L + Y + + Sbjct 58 VRCPTGEIRITDGFDLKARHIFHTVGPVWRDGRHNEPEQLANCYWQSLKLAEQMMLHSIA 117 Query 328 APLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLY 365 P +S GI+G + R+ V R ++ L +++ Y Sbjct 118 FPAISCGIYGYPLHQAARIAVTETRDWQRSHKVPKHIVLVAYNEATY 164 >sp|Q71W03|Y2748_LISMF Macro domain-containing protein LMOf2365_2748 OS=Listeria monocytogenes serotype 4b (strain F2365) OX=265669 GN=LMOf2365_2748 PE=4 SV=1 Length=176 Score = 146 bits (368), Expect = 1e-38, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 75/175 (43%), Gaps = 27/175 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 + + DI E+ V+VNAAN L GGGV GA+++A + E + I G Sbjct 3 ITVVKGDITEQ----DVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGTC 58 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAY------ENFNQHEVLLAPL 330 G + + S +L A + +H VGP GE + L S Y + + P Sbjct 59 PAGEAVITSAGDLQASYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPN 118 Query 331 LSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKN---LYDKLVSS 371 +S G++G + V + TVR + FD+ LY+KL++S Sbjct 119 ISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIEEIRFVCFDEENLKLYNKLINS 173 >sp|Q926Y8|Y2902_LISIN Macro domain-containing protein lin2902 OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=lin2902 PE=4 SV=1 Length=176 Score = 146 bits (368), Expect = 1e-38, Method: Composition-based stats. Identities = 49/176 (28%), Positives = 74/176 (42%), Gaps = 27/176 (15%) Query 219 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 278 ++ + DI E+ V+VNAAN L GGGV GA+++A + E + I G Sbjct 2 DITVVKGDITEQ----NVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGS 57 Query 279 LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAY------ENFNQHEVLLAP 329 G + + S +L A +H VGP GE + L S Y + P Sbjct 58 CPAGEAVITSAGDLKAHFIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFP 117 Query 330 LLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKN---LYDKLVSS 371 +S G++G + V + TVR V FD+ LY+KL++S Sbjct 118 NISTGVYGFPKKLAAEVALYTVRKWAEEEYDSSIKEVRFVCFDEENLTLYNKLINS 173 >sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) OX=220668 GN=lp_3408 PE=4 SV=1 Length=172 Score = 145 bits (366), Expect = 2e-38, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 27/170 (16%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 + + + DI + + +VNAAN L GGGV GA+++A A+ +G Sbjct 4 IKVIHGDITK----MTVDAIVNAANTSLLGGGGVDGAIHRAAGPALLAACRPL---HG-C 55 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPL 330 G + + G L AK+ +H GP G+ ++QLL ++Y N N + + P Sbjct 56 ATGEAKITPGFRLPAKYVIHTPGPVWQGGQHNELQLLANSYRNSLNLAAENHCQTVAFPS 115 Query 331 LSAGIFGADPIHSLRVCVDTVR----------TNVYLAVFDKNLYDKLVS 370 +S G++ + + + T++ + + FD + + Sbjct 116 ISTGVYHFPLSIAAPLALKTLQATAQTTAHTVQTITIVCFDDQTQNVFST 165 >sp|Q44020|YGB2_CUPNE Macro domain-containing protein in gbd 3'region OS=Cupriavidus necator OX=106590 PE=4 SV=1 Length=173 Score = 143 bits (361), Expect = 9e-38, Method: Composition-based stats. Identities = 43/166 (26%), Positives = 73/166 (44%), Gaps = 22/166 (13%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 277 +++ + + DI +++ +VNAAN L GGGV GA++ A +A++ T G Sbjct 4 EHLQVVHGDIT----RMEVDAIVNAANSGLLGGGGVDGAIHGAGGSAIKEACRAIRDTQG 59 Query 278 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLA 328 G + + +G +L A + +H VGP G+ + +LL +AY N + L Sbjct 60 GCPTGEAVITTGGHLPAPYVIHAVGPVWQGGDQGEDELLANAYRNSIRLAAQHHLRRLAF 119 Query 329 PLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLY 365 P +S GI+ + + + VR V FD Y Sbjct 120 PNISTGIYAFPRERAADIAIAAVREALAAAPEIEQVTFVCFDDENY 165 >sp|Q8RHQ2|Y1951_FUSNN Uncharacterized protein FN1951 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=FN1951 PE=4 SV=1 Length=175 Score = 143 bits (360), Expect = 1e-37, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 75/171 (44%), Gaps = 25/171 (15%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 + + + DI + + +VNAAN L+ GGGV GA+ KA + + E + G Sbjct 6 IKLISGDITKIP---EVEAIVNAANSSLEMGGGVCGAIFKAAGSELAQECKEI----GGC 58 Query 280 KVGGSCVLSGHNLA-KHCLHVVGPNVNKGE--DIQLLKSAY----ENFNQHEV--LLAPL 330 G + + G+NL K+ +H VGP + GE + + L SAY + N+ + + P Sbjct 59 NTGEAVITKGYNLPNKYIIHTVGPRYSTGENREAERLASAYYESLKLANEKGIRRIAFPS 118 Query 331 LSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSSF 372 +S GI+ ++ + T ++ L V D+ Y + Sbjct 119 ISTGIYRFPVDEGAKIALTTAIKFLDKNPSSFDLILWVLDEKTYIVYKEKY 169 >sp|Q6PAV8|MACD2_XENLA ADP-ribose glycohydrolase MACROD2 OS=Xenopus laevis OX=8355 GN=macrod2 PE=2 SV=1 Length=418 Score = 150 bits (378), Expect = 3e-37, Method: Composition-based stats. Identities = 55/280 (20%), Positives = 99/280 (35%), Gaps = 34/280 (12%) Query 161 WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNV 220 W ++ + +D + E++ L + V Sbjct 11 WKEEKERLLNMTRDERRKEYREYVSLDKIPSLMEELKSKASSDDESPEEIQVKNSLCEKV 70 Query 221 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 280 DI + ++ +VNAAN L GGGV G +++A+ ++ E + G + Sbjct 71 SFYKGDITQ----LEVDAIVNAANTSLLGGGGVDGCIHRASGPSLLAECREL----GGCE 122 Query 281 VGGSCVLSGHNL-AKHCLHVVGPNVNKG---EDIQLLKSAYENF------NQHEVLLAPL 330 G + + G+ L AK+ +H VGP Q L S Y + N + P Sbjct 123 TGQAKITCGYELPAKYVIHTVGPIARGHITPNHKQDLASCYNSSLTLATENDIRTIAFPC 182 Query 331 LSAGIFGADPIHSLRVCVDTVRT----------NVYLAVFDK---NLYDKLVSSFLEMKS 377 +S GI+G + V + TV+ V VF + +Y + ++ F Sbjct 183 ISTGIYGYPNEPAANVALTTVKEFLKKNRDKIDRVIFCVFLEVDFKIYKRKLNEFFPKDG 242 Query 378 EKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKAC 417 E + + + + TE KP K+ +K + Sbjct 243 GDDEEGEKGDSDEMKED---TEGKPQSPPMKKIKEKKEDT 279 >sp|Q985D2|Y7730_RHILO Macro domain-containing protein mll7730 OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=mll7730 PE=4 SV=1 Length=176 Score = 139 bits (349), Expect = 4e-36, Method: Composition-based stats. Identities = 49/182 (27%), Positives = 77/182 (42%), Gaps = 29/182 (16%) Query 215 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 274 K D + I DI + + +VNAAN L GGGV GA+++A ++VE Sbjct 3 KALDRIRIHTGDITK----LDVDAIVNAANTLLLGGGGVDGAIHRAAGRELEVECRMLN- 57 Query 275 TNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYEN------FNQHEV 325 KVG + + G+ L A+H +H VGP G + +LL S Y + N Sbjct 58 ---GCKVGDAKITKGYKLPARHIIHTVGPVWQGGGKGEAELLASCYRSSLELAAANDCRS 114 Query 326 LLAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVSSFL 373 + P +S G++ + + V TV V FD+ LY + V++ Sbjct 115 VAFPAISTGVYRYPKDEATGIAVGTVSMVIEEKAMPETVIFCCFDEQTAQLYLRAVAALR 174 Query 374 EM 375 + Sbjct 175 KG 176 >sp|A1Z1Q3|MACD2_HUMAN ADP-ribose glycohydrolase MACROD2 OS=Homo sapiens OX=9606 GN=MACROD2 PE=1 SV=2 Length=425 Score = 146 bits (368), Expect = 5e-36, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 23/239 (10%) Query 203 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 262 T E + L T+ V + DI ++ +VNAAN L GGGV G +++A Sbjct 57 NTQETSQVKKSL--TEKVSLYRGDIT----LLEVDAIVNAANASLLGGGGVDGCIHRAAG 110 Query 263 NAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNK---GEDIQLLKSAYE 318 + E + G + + G++L AK+ +H VGP G + L + Y+ Sbjct 111 PCLLAECRNLN----GCDTGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKEDLANCYK 166 Query 319 NF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSF 372 + N + P +S GI+G + + ++T++ +LA + + F Sbjct 167 SSLKLVKENNIRSVAFPCISTGIYGFPNEPAAVIALNTIKE--WLAKNHHEVDRIIFCVF 224 Query 373 LEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFL 431 LE+ K ++K+ E + E E ++ + K VEE+ ++ + Sbjct 225 LEVD-FKIYKKKMNEFFSVDDNNEEEEDVEMKEDSDENGPEEKQSVEEMEEQSQDADGV 282 >sp|Q3UYG8|MACD2_MOUSE ADP-ribose glycohydrolase MACROD2 OS=Mus musculus OX=10090 GN=Macrod2 PE=1 SV=1 Length=475 Score = 147 bits (370), Expect = 8e-36, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 22/184 (12%) Query 203 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 262 T E L ++ V + DI ++ +VNAAN L GGGV G +++A Sbjct 57 NTQEAPQMKKSL--SEKVSLYRGDIT----LLEVDAIVNAANASLLGGGGVDGCIHRAAG 110 Query 263 NAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNK---GEDIQLLKSAYE 318 + E + + G + + G++L AK+ +H VGP G + L + Y+ Sbjct 111 PCLLAECRNLN----GCETGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKEDLANCYQ 166 Query 319 NF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSF 372 + N + P +S GI+G + + + T++ +LA + + + F Sbjct 167 SSLKLVKENNLRSVAFPCISTGIYGFPNEPAAVIALGTIKE--WLAKNHQEVDRIIFCVF 224 Query 373 LEMK 376 LE+ Sbjct 225 LEVD 228 >sp|Q8K4G6|MACD1_RAT ADP-ribose glycohydrolase MACROD1 (Fragment) OS=Rattus norvegicus OX=10116 GN=Macrod1 PE=2 SV=2 Length=258 Score = 140 bits (352), Expect = 1e-35, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 22/245 (9%) Query 144 FGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 203 + + A + + DW + S E++ ++ P + + Sbjct 11 WAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCKDFIKLKKIPMWKETAKGLAG 70 Query 204 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNN 263 +E + +L + + + DI + ++ +VNAAN L GGGV G +++A + Sbjct 71 KVENPKYKKDKQLNEKISLFRGDITK----LEVDAIVNAANNSLLGGGGVDGCIHRAAGS 126 Query 264 AMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG---EDIQLLKSAYEN 319 + E + G + + G+ L AKH +H VGP L+S Y + Sbjct 127 LLTDECRTLQN----CETGKAKITCGYRLPAKHVIHTVGPIAVGQPTASQAAELRSCYLS 182 Query 320 F------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSF 372 ++ + P +S G+FG + V + T+R K+ D+L + F Sbjct 183 SLDLLLEHRLRSVAFPCISTGVFGYPNEEAAEVVLATLRE---WLEQHKDKVDRLIICVF 239 Query 373 LEMKS 377 LE Sbjct 240 LEKDE 244 >sp|Q9RS39|Y2288_DEIRA Macro domain-containing protein DR_2288 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) OX=243230 GN=DR_2288 PE=4 SV=1 Length=170 Score = 136 bits (342), Expect = 2e-35, Method: Composition-based stats. Identities = 35/177 (20%), Positives = 69/177 (39%), Gaps = 31/177 (18%) Query 219 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 278 + + DI + VV AAN L GGGV G +++A + I G Sbjct 2 PLELVQGDIAHQ----PVDAVVTAANKQLMGGGGVDGVIHRAAGPRLLQA----IRPIGG 53 Query 279 LKVGGSCVLSGHNL----AKHCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVL 326 G + + +L K+ +H VGP G+ + +LL AY N + Sbjct 54 TPTGTAVITPAFDLERQGVKYVIHAVGPIWRGGQHGEAELLAGAYRESLRLGVENGCRSV 113 Query 327 LAPLLSAGIFGADPIHSLRVCVDTV--------RTNVYLAVFDKN---LYDKLVSSF 372 P +S G++G + + + T+ +V + ++ + ++++ ++ Sbjct 114 AFPSISTGVYGYPLDRAAPIALATIQDFLRSHPDLSVRMVLYGADALHVFERALAQL 170 >sp|Q9BQ69|MACD1_HUMAN ADP-ribose glycohydrolase MACROD1 OS=Homo sapiens OX=9606 GN=MACROD1 PE=1 SV=2 Length=325 Score = 141 bits (355), Expect = 3e-35, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 95/245 (39%), Gaps = 22/245 (9%) Query 144 FGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 203 + + A + + DW + S E++ ++ P + V Sbjct 78 WAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCKDFVRLKKIPTWKEMAKGVAV 137 Query 204 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNN 263 +E + +L + + + +DI + ++ +VNAAN L GGGV G +++A Sbjct 138 KVEEPRYKKDKQLNEKISLLRSDITK----LEVDAIVNAANSSLLGGGGVDGCIHRAAGP 193 Query 264 AMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG---EDIQLLKSAYEN 319 + E + K G + + G+ L AK+ +H VGP L+S Y + Sbjct 194 LLTDECRTLQS----CKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLS 249 Query 320 F------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSF 372 ++ + P +S G+FG + + + T+R K+ D+L + F Sbjct 250 SLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLRE---WLEQHKDKVDRLIICVF 306 Query 373 LEMKS 377 LE Sbjct 307 LEKDE 311 >sp|Q922B1|MACD1_MOUSE ADP-ribose glycohydrolase MACROD1 OS=Mus musculus OX=10090 GN=Macrod1 PE=1 SV=2 Length=323 Score = 141 bits (354), Expect = 5e-35, Method: Composition-based stats. Identities = 48/245 (20%), Positives = 94/245 (38%), Gaps = 22/245 (9%) Query 144 FGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 203 + + A + + DW + S E++ ++ P + + Sbjct 76 WAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCKDFIKLKKIPTWKETAKGLAV 135 Query 204 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNN 263 +E + +L + + + DI + ++ +VNAAN L GGGV G +++A + Sbjct 136 KVEDPKYKKDKQLNEKISLYRGDITK----LEVDAIVNAANSSLLGGGGVDGCIHRAAGS 191 Query 264 AMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG---EDIQLLKSAYEN 319 + E + G + + G+ L AK+ +H VGP L+S Y + Sbjct 192 LLTDECRTLQN----CETGKAKITCGYRLPAKYVIHTVGPIAVGQPTASQAAELRSCYLS 247 Query 320 F------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSF 372 ++ + P +S G+FG + V + ++R K+ D+L + F Sbjct 248 SLDLLLEHRLRSVAFPCISTGVFGYPNEEAAEVVLASLRE---WLEQHKDKVDRLIICVF 304 Query 373 LEMKS 377 LE Sbjct 305 LEKDE 309 >sp|Q2KHU5|MACD1_BOVIN ADP-ribose glycohydrolase MACROD1 OS=Bos taurus OX=9913 GN=MACROD1 PE=2 SV=1 Length=325 Score = 139 bits (351), Expect = 1e-34, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 92/245 (38%), Gaps = 22/245 (9%) Query 144 FGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 203 + + A + + DW + S E++ ++ P + V Sbjct 78 WAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCRDFVRLKKIPTWKETAKGVTV 137 Query 204 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNN 263 +E + +L + + + DI + ++ +VNAAN L GGGV G +++A Sbjct 138 KVEEPKYKKDKQLNEKISLFRGDITK----LEVDAIVNAANSSLLGGGGVDGCIHRAAGP 193 Query 264 AMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG---EDIQLLKSAYEN 319 + E + G + + G+ L AK+ +H VGP + L+S Y + Sbjct 194 LLTDECRTLQN----CETGKAKITCGYRLPAKYVIHTVGPIAHGEPSASQAAELRSCYLS 249 Query 320 F------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL-VSSF 372 ++ P +S G+FG + V + +R K+ D+L + F Sbjct 250 SLDLLLEHRLRSAAFPCISTGVFGYPNEAAAEVVLTALRE---WLEQHKDKVDRLIICVF 306 Query 373 LEMKS 377 LE Sbjct 307 LEKDE 311 >sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=Ta1105 PE=4 SV=2 Length=196 Score = 133 bits (334), Expect = 6e-34, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 24/176 (14%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP- 278 + ++ DI E +VNAAN L GGGV GA++ A + E P Sbjct 11 LAVEVGDITES----DAEAIVNAANSSLMGGGGVDGAIHSAAGPELNGELVKIRRERYPN 66 Query 279 -LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN----FNQHEV--LLA 328 L G + + G+ L A H +H VGP G + +L +Y + + + + Sbjct 67 GLPPGEAVITRGYRLKASHIIHTVGPVWMGGRNGEDDVLYRSYRSCLDLAREFGIHDIAF 126 Query 329 PLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSSFLEM 375 P LS G +G + R+ + +V V + ++ + + ++ Sbjct 127 PALSTGAYGFPFDRAERIAIRSVIDFLKDESAGYTVRFVFYTEDQGKRFLFILSDL 182 >sp|Q8IXQ6|PARP9_HUMAN Protein mono-ADP-ribosyltransferase PARP9 OS=Homo sapiens OX=9606 GN=PARP9 PE=1 SV=2 Length=854 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 47/189 (25%), Positives = 73/189 (39%), Gaps = 20/189 (11%) Query 197 ELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGA 256 + + F L + + D+ A VVNAAN L HGGG+A A Sbjct 97 SPVQEGNSKSLQVFRKMLTPRIELSVWKDDLTTHA----VDAVVNAANEDLLHGGGLALA 152 Query 257 LNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGED---IQL 312 L KA +Q ES ++A G + G V L K +H VGP + + Sbjct 153 LVKAGGFEIQEESKQFVARYGKVSAGEIAVTGAGRLPCKQIIHAVGPRWMEWDKQGCTGK 212 Query 313 LKSAYENFNQH--------EVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL 364 L+ A + + + + P LS+GIF L +C T+ + +++ K + Sbjct 213 LQRAIVSILNYVIYKNTHIKTVAIPALSSGIFQFP----LNLCTKTIVETIRVSLQGKPM 268 Query 365 YDKLVSSFL 373 L L Sbjct 269 MSNLKEIHL 277 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 39/220 (18%), Positives = 67/220 (30%), Gaps = 38/220 (17%) Query 205 IEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNA 264 SF+ + + I I + V+VN+ N + G VA ++ + Sbjct 304 ETTPSFNAMVVNNLTLQIVQGHI----EWQTADVIVNSVNPHDITVGPVAKSILQQAGVE 359 Query 265 MQVE-----SDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVV------GPNVNKGEDIQL 312 M+ E + + + L V G NL K+ HV+ P + K + Sbjct 360 MKSEFLATKAKQFQRSQLVL------VTKGFNLFCKYIYHVLWHSEFPKPQILKHAMKEC 413 Query 313 LKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT----------NVYLAVF-- 360 L+ E + P L G + + D V T V +F Sbjct 414 LEKCIE--QNITSISFPALGTGNMEIKKETAAEILFDEVLTFAKDHVKHQLTVKFVIFPT 471 Query 361 DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES 400 D +Y S K K + +P+ + Sbjct 472 DLEIYKAFSSEM--AKRSKMLSLNNYSVPQSTREEKRENG 509 >sp|Q8CAS9|PARP9_MOUSE Protein mono-ADP-ribosyltransferase PARP9 OS=Mus musculus OX=10090 GN=Parp9 PE=1 SV=2 Length=866 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 71/171 (42%), Gaps = 17/171 (10%) Query 229 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 288 ++ + VVNAAN L HG G+AG+L K +Q ES IA G + VGG + Sbjct 127 DDLTRHVVDAVVNAANENLLHGSGLAGSLVKTGGFEIQEESKRIIANVGKISVGGIAITG 186 Query 289 GHNLAKH-CLHVVGPNV---NKGEDIQLLKSAYENFNQH--------EVLLAPLLSAGIF 336 L H +H VGP N I+LLK A N + + + P LS+GIF Sbjct 187 AGRLPCHLIIHAVGPRWTVTNSQTAIELLKFAIRNILDYVTKYDLRIKTVAIPALSSGIF 246 Query 337 GADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAE 387 L +C + + L DK ++ L L + +E Sbjct 247 QFP----LDLCTSIILETIRLYFQDKQMFGNLREIHL-VSNEDPTVASFKS 292 Score = 42.9 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 23/123 (19%), Positives = 45/123 (37%), Gaps = 14/123 (11%) Query 237 TVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKH 295 V+VN+ + G VA ++ + M+ E D + +V V G L ++ Sbjct 339 DVIVNSGYMQDFKSGRVAQSILRQAGVEMEKELDKVNLSTDYQEV---WVTKGFKLSCQY 395 Query 296 CLHVVGPNVNKG-EDIQLLKSAYENFNQH------EVLLAPLLSAGIFGADPIHSLRVCV 348 HV + Q+LK A ++ + + P L G+ + ++ Sbjct 396 VFHVA---WHSQINKYQILKDAMKSCLEKCLKPDINSISFPALGTGLMDLKKSTAAQIMF 452 Query 349 DTV 351 + V Sbjct 453 EEV 455 >sp|Q460N5|PAR14_HUMAN Protein mono-ADP-ribosyltransferase PARP14 OS=Homo sapiens OX=9606 GN=PARP14 PE=1 SV=3 Length=1801 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 107/277 (39%), Gaps = 24/277 (9%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 + ++ D ++ VVVNA+N LKH GG+A AL+KA +Q + D + G L Sbjct 804 LIVQQGD----LARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRL 859 Query 280 KVGGSCVLSGHNLA-KHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAP 329 G + + L H +H VGP + E + LL+ A + ++ + P Sbjct 860 LPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIP 919 Query 330 LLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIP 389 +S+G+FG + V ++ N K L +L SEK VE AE Sbjct 920 AISSGVFGFPLGRCVETIVSAIKENFQF----KKDGHCLKEIYLVDVSEKTVE-AFAEAV 974 Query 390 KEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLE---ETKFLTENLLLY-IDINGNL 445 K K + ++ K E+ + + + E + D+ N Sbjct 975 KTVFKATLPDTAAPPGLPPAAAGPGKTSWEKGSLVSPGGLQMLLVKEGVQNAKTDVVVNS 1034 Query 446 HPDSATLVSD-IDITFLKKDAPYIVGDVVQEGVLTAV 481 P L + + L+K P + ++ G AV Sbjct 1035 VPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAV 1071 Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 77/240 (32%), Gaps = 28/240 (12%) Query 201 VVQTIEVNSFSGYLKLTDNVYIKN--ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALN 258 T+ Y ++ + DI +E + V+VN+ + GV+ A+ Sbjct 1208 FYGTVSSPDSGVYEMKIGSIIFQVASGDITKE----EADVIVNSTSNSFNLKAGVSKAIL 1263 Query 259 KATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAY 317 + ++ E + G L K+ +HV+G N K +L+ Sbjct 1264 ECAGQNVERECSQQAQQRK----NDYIITGGGFLRCKNIIHVIGGNDVKSSVSSVLQECE 1319 Query 318 ENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTV-----------RTNVYLAVFDKNLYD 366 + + + P + G P +D + V + +F + D Sbjct 1320 K--KNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLPQVLD 1377 Query 367 KLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES----KPSVEQRKQDDKKIKACVEEVT 422 ++ + + + Q+ F +S V ++K + + C E VT Sbjct 1378 VFYANMKKREGTQLSSQQSVMSKLASFLGFSKQSPQKKNHLVLEKKTESATFRVCGENVT 1437 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 48/135 (36%), Gaps = 11/135 (8%) Query 227 IVEEAKKVKPTVVVNAANVYL-KHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSC 285 + E + K VVVN+ + L G ++ +L + +Q E D + + +G Sbjct 1019 VKEGVQNAKTDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDT-VGQGVAVSMGTVL 1077 Query 286 VLSGHNL-AKHCLHVVGPNVNKG--------EDIQLLKSAYENFNQHEVLLAPLLSAGIF 336 S NL ++ LHVV P G EDI + + P + G Sbjct 1078 KTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNL 1137 Query 337 GADPIHSLRVCVDTV 351 G + + V Sbjct 1138 GFPKNIFAELIISEV 1152 >sp|Q2EMV9|PAR14_MOUSE Protein mono-ADP-ribosyltransferase PARP14 OS=Mus musculus OX=10090 GN=Parp14 PE=1 SV=3 Length=1817 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 64/269 (24%), Positives = 104/269 (39%), Gaps = 22/269 (8%) Query 229 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 288 E+ + VVVNAAN LKH G+A AL+KA +Q E D + G + G + + Sbjct 820 EDLSRFPVDVVVNAANENLKHISGLAQALSKAAGPELQTECDQIVKEGGVVLPGNAVISK 879 Query 289 GHNL-AKHCLHVVGPNVNKG---EDIQLLKSAYENF------NQHEVLLAPLLSAGIFGA 338 L H +H VGP E + LLK ++ + P +SAGIF Sbjct 880 AGKLPCHHVIHAVGPRWKGDKVLECVSLLKKVVRQSLSLAEEHRCRSIAMPAVSAGIFDF 939 Query 339 DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFIT 398 L +CV + + + K L +L +V + AE K K ++ Sbjct 940 P----LELCVANIVSAIKEHFQHKRDTHTLKKIYLVGL-PAKVARAFAEAVKTTYKDSLS 994 Query 399 ES------KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATL 452 + K V K K+ V + + +N + +N ++ PD Sbjct 995 HTAFPSSLKALVPLGKTPQKQGSLLVSPEGLRIRLVEEGVQNATTHAIVN-SISPDLKLN 1053 Query 453 VSDIDITFLKKDAPYIVGDVVQEGVLTAV 481 + FL+K P + ++ + G +V Sbjct 1054 KGPLSQAFLEKAGPKLQEELTRSGQGVSV 1082 Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 105/330 (32%), Gaps = 55/330 (17%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 + +I++E V+VN+ + GV+ A+ + ++ E + Sbjct 1240 FQVATGNIIKEV----ADVIVNSTTLTFDLKSGVSKAILEGAGQNVEQECSLLAKQSN-- 1293 Query 280 KVGGSCVLSGHNL--AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFG 337 +++G L K+ +HVVG N K +L+ + + + P + G Sbjct 1294 ---HGYIVTGGGLLQCKNIIHVVGGNDVKKSVSCVLEECEQ--RNYSSICLPAIGTGNAQ 1348 Query 338 ADPIHSLRVCVDTVRT-----------NVYLAVFDKNLYDKLVSSFLEMKSE-------- 378 DP + +D + V + +F ++ + E + Sbjct 1349 QDPNVVAKAIIDAIEEFVQKKSVQAVKRVKVVIFQPHILQFFYDNMKEREGSPAPPKQSP 1408 Query 379 -KQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKAC---VEEVTTTLEETKFLTEN 434 KQ K + V ++K + + C V+ V T+ K L Sbjct 1409 AKQSVMSKIASFLGFPKQASPKKNTLVLEKKIEHTVFQVCGSGVDSVNKTISWLKELITK 1468 Query 435 LLLYIDINGNLHPDSATLVSDIDITFLKKDAPYI------------VGDVVQEGVLTAVV 482 L + + VSD D+ +K + G+ V+ Sbjct 1469 EQL-------SYTNDDECVSDFDMEEYEKLNEIQKELNITIEMNQKKTSIQVSGISRDVI 1521 Query 483 IPTKKAGGTTEMLAKALRKVPTDNYITTYP 512 + G + + A K +YI+TY Sbjct 1522 KARDEIEGMIKSIRLAKEKESQADYISTYV 1551 Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 107/328 (33%), Gaps = 43/328 (13%) Query 197 ELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLK-HGGGVAG 255 L +V + G L ++ ++ + E + +VN+ + LK + G ++ Sbjct 1001 SLKALVPLGKTPQKQGSLLVSPE-GLRIRLVEEGVQNATTHAIVNSISPDLKLNKGPLSQ 1059 Query 256 ALNKATNNAMQVESDDYIATNGP-LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLL 313 A + +Q E + G + VG SG NL ++H HVV P L Sbjct 1060 AFLEKAGPKLQEELT--RSGQGVSVDVGTILQTSGCNLNSRHVFHVVPPPWKSNNSAWSL 1117 Query 314 KSAYENFNQH---------EVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL 364 K + + P + G ++ + V + ++ Sbjct 1118 KIMKNIIRDCLKTTENLSLQSIAFPAIGTGNLRFPKPEFAKLIISEVLK---FSSRNQLK 1174 Query 365 YDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKK-IKACVEEVTT 423 + V FL + + Q + + PS + K +D + I + T Sbjct 1175 TLQEV-QFLLHPKDHENIQAFS-----DEFDKRNNGDPSDKNPKAEDTQGIYGSLSSPTL 1228 Query 424 TLEETKFLTENLLLYIDINGNLHPDSAT-LVSDIDITFLKKDAPYIVGDVVQEGVLTAVV 482 + E +L+ GN+ + A +V+ +TF K V + EG Sbjct 1229 GMHEMNI---GPILFQVATGNIIKEVADVIVNSTTLTFDLKSG---VSKAILEG------ 1276 Query 483 IPTKKAGGTTEMLAKALRKVPTDNYITT 510 AG E L K YI T Sbjct 1277 -----AGQNVEQECSLLAKQSNHGYIVT 1299 >sp|P0C6F3|R1A_BEV Replicase polyprotein 1a OS=Berne virus OX=11156 GN=1a PE=1 SV=1 Length=4569 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 89/225 (40%), Gaps = 24/225 (11%) Query 168 QTVGQQDGSEDNQTTTIQTIVEVQPQ-LEMELTPVVQTIEV-------NSFSGYLKLTDN 219 V ++ D + + V+ + E L+P + + N Sbjct 1632 VKVNAKNEKLDIGSQCERVFVDYDVKKNEWTLSPEEGEDSDDNLDLPFEQYYEFKIGQTN 1691 Query 220 VYIKNADIVEEAKKVK----PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 V + D + +K VVN AN LKHGGG+A ++ +Q S++YI Sbjct 1692 VVLVQDDFKSVFEFLKSEQGVDYVVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITK 1751 Query 276 NGPLKVGGSCVLSGHNLAK--HCLHVVGPNVNKGEDIQLLKSAYENF----NQHEVLLAP 329 N + V + G L K + +H VGP V+ G+ Q L A+ + +L Sbjct 1752 NKTVPVTKAIKSPGFQLGKKVNIIHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILTS 1811 Query 330 LLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLE 374 +LS GIFG S + V A DK+L +V++ +E Sbjct 1812 MLSTGIFGCTVNDSFNTFLSNV------ARLDKSLVVFVVTNMVE 1850 >sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156 GN=rep PE=1 SV=1 Length=6857 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 89/225 (40%), Gaps = 24/225 (11%) Query 168 QTVGQQDGSEDNQTTTIQTIVEVQPQ-LEMELTPVVQTIEV-------NSFSGYLKLTDN 219 V ++ D + + V+ + E L+P + + N Sbjct 1632 VKVNAKNEKLDIGSQCERVFVDYDVKKNEWTLSPEEGEDSDDNLDLPFEQYYEFKIGQTN 1691 Query 220 VYIKNADIVEEAKKVK----PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 V + D + +K VVN AN LKHGGG+A ++ +Q S++YI Sbjct 1692 VVLVQDDFKSVFEFLKSEQGVDYVVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITK 1751 Query 276 NGPLKVGGSCVLSGHNLAK--HCLHVVGPNVNKGEDIQLLKSAYENF----NQHEVLLAP 329 N + V + G L K + +H VGP V+ G+ Q L A+ + +L Sbjct 1752 NKTVPVTKAIKSPGFQLGKKVNIIHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILTS 1811 Query 330 LLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLE 374 +LS GIFG S + V A DK+L +V++ +E Sbjct 1812 MLSTGIFGCTVNDSFNTFLSNV------ARLDKSLVVFVVTNMVE 1850 >sp|Q8BCR0|POLN_RUBVN Non-structural polyprotein p200 OS=Rubella virus (strain RN-UK86) OX=376267 PE=3 SV=1 Length=2116 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 47/198 (24%), Positives = 71/198 (36%), Gaps = 18/198 (9%) Query 169 TVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIV 228 S + +EV + T + + Y + V+++ DI+ Sbjct 768 GDPDSPTSAEPADRARHAELEVVYEPSGPPTSTKADPDSDIVESYARAAGPVHLRVRDIM 827 Query 229 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 288 + K VVVNAAN L G GV GA+ A+ + P G + Sbjct 828 DPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL----APCPTGEAVATP 881 Query 289 GHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIF 336 GH H +H V P + E LL+ AY + + + PLL AG++ Sbjct 882 GHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVY 941 Query 337 GADPIHSLRVCVDTVRTN 354 G SLR + RT Sbjct 942 GWSAAESLRAALAATRTE 959 >sp|P13889|POLN_RUBVT Non-structural polyprotein p200 OS=Rubella virus (strain Therien) OX=11045 PE=3 SV=5 Length=2116 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 46/180 (26%), Positives = 68/180 (38%), Gaps = 18/180 (10%) Query 187 IVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVY 246 +EV + T + + Y + V+++ DI++ K VVVNAAN Sbjct 786 ELEVACEPSGPPTSTRADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEG 843 Query 247 LKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVN 305 L G GV GA+ A+ P G + GH H +H V P Sbjct 844 LLAGSGVCGAIFANATAALAANCRRL----APCPTGEAVATPGHGCGYTHIIHAVAPRRP 899 Query 306 KG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 354 + E LL+ AY + + + PLL AG++G SLR + RT Sbjct 900 RDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVYGWSAAESLRAALAATRTE 959 >sp|P36328|POLN_EEVVP Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain P676) OX=36385 PE=1 SV=2 Length=2493 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 40/272 (15%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + ++ DI + V++NAAN + GGGV GAL K + ++ Sbjct 1329 CAPSYHVVRGDIATATEG----VIINAANSKGQPGGGVCGALYKKFPESFDLQ------- 1377 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 326 P++VG + ++ G AKH +H VGPN NK +++ L AYE N N ++ + Sbjct 1378 --PIEVGKARLVKG--AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSV 1433 Query 327 LAPLLSAGIFGADPI------HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS GIF + + L +DT +V + DK L + + + Sbjct 1434 AIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEA---VARREA 1490 Query 381 VEQKIAEIPKEEVKPF----ITESKPSVEQRKQDDKKIKACVE--EVTTTLEETKFLTEN 434 VE+ +P K S+ RK E T + K + E Sbjct 1491 VEEICISDDSSVTEPDAELVRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDIAE- 1549 Query 435 LLLYIDINGNLHPDSATLVSDIDITFLKKDAP 466 + + + + ++ ++ P Sbjct 1550 INAMWPVATEANEQVCMYILGESMSSIRSKCP 1581 >sp|P36327|POLN_EEVV3 Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain 3880) OX=36382 PE=3 SV=3 Length=2485 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 62/272 (23%), Positives = 104/272 (38%), Gaps = 40/272 (15%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + ++ DI + V++NAAN + GGGV GAL K + ++ Sbjct 1329 CAPSYHVVRGDIATATEG----VIINAANSKGQPGGGVCGALYKKFPESFDLQ------- 1377 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 326 P++VG + ++ G AKH +H VGPN NK +I+ L AYE N N ++ + Sbjct 1378 --PIEVGKARLVKG--AAKHIIHAVGPNFNKVSEIEGDKQLAEAYESIAKIVNDNNYKSV 1433 Query 327 LAPLLSAGIFGADPI------HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS GIF + + L +DT +V + DK L + + + Sbjct 1434 AIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEA---VARREA 1490 Query 381 VEQKIAEIPKEEVKPF----ITESKPSVEQRKQDDKKIKACVE--EVTTTLEETKFLTEN 434 VE+ +P K S+ RK E T + K + E Sbjct 1491 VEEICISDDSSVTEPDAELVRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDIAE- 1549 Query 435 LLLYIDINGNLHPDSATLVSDIDITFLKKDAP 466 + + + + ++ ++ P Sbjct 1550 INAMWPVATEANEQVCMYILGESMSSIRSKCP 1581 >sp|P27282|POLN_EEVVT Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain Trinidad donkey) OX=11038 PE=1 SV=3 Length=2493 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 40/272 (15%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + ++ DI + V++NAAN + GGGV GAL K + ++ Sbjct 1329 CAPSYHVVRGDIATATEG----VIINAANSKGQPGGGVCGALYKKFPESFDLQ------- 1377 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 326 P++VG + ++ G AKH +H VGPN NK +++ L AYE N N ++ + Sbjct 1378 --PIEVGKARLVKG--AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSV 1433 Query 327 LAPLLSAGIFGADPI------HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS GIF + + L +DT +V + DK L + + + Sbjct 1434 AIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEA---VARREA 1490 Query 381 VEQKIAEIPKEEVKPF----ITESKPSVEQRKQDDKKIKACVE--EVTTTLEETKFLTEN 434 VE+ +P K S+ RK E T + K + E Sbjct 1491 VEEICISDDSSVTEPDAELVRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDIAE- 1549 Query 435 LLLYIDINGNLHPDSATLVSDIDITFLKKDAP 466 + + + + ++ ++ P Sbjct 1550 INAMWPVATEANEQVCMYILGESMSSIRSKCP 1581 >sp|O59182|Y1513_PYRHO Uncharacterized protein PH1513 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=PH1513 PE=4 SV=1 Length=190 Score = 115 bits (287), Expect = 1e-27, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 73/180 (41%), Gaps = 32/180 (18%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD----DYIAT 275 I DI + + +VNAAN YL+HGGGVA A+ KA + + + + Sbjct 5 FKIVRGDITK----FRAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYTRISKEEMRRQ 60 Query 276 NGP--LKVGGSCVLSGHNL----AKHCLHVVGP----NVNKGEDIQLLKSAYENFNQHE- 324 G ++ G V L K+ +H VGP +K ++ +L + + + Sbjct 61 LGKDWIEHGEVVVTPPMKLKENGVKYVIHTVGPYCGGVWSKDKEEKLKLAILGALKKADE 120 Query 325 ----VLLAPLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSS 371 + P +SAGI+G +R + V+ VYL ++ + Y + + Sbjct 121 LGVKSIAFPAISAGIYGCPLKEVVRTFKEVVKEFLKVANHVKEVYLVLYSERDYKLALET 180 >sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 OX=360393 GN=1a PE=3 SV=1 Length=4445 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 39/158 (25%), Positives = 63/158 (40%), Gaps = 10/158 (6%) Query 204 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVK----PTVVVNAANVYLKHGGGVAGALNK 259 + N + + +V + D +K VVN AN LKHGGG+A ++ Sbjct 1630 ELPFNQYYEFKVGRASVVLVQDDFKSVYDFLKSEQGVDYVVNPANNQLKHGGGIAKVISC 1689 Query 260 ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK--HCLHVVGPNVNKGEDIQLLKS-- 315 + S++YI L V + G L K +HVVGP + + L++ Sbjct 1690 MCGPKLTSWSNNYIKQYKKLGVTCAIRSPGFQLGKGVQIIHVVGPKSADSDVVNKLEASW 1749 Query 316 --AYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTV 351 ++N +L +LS GIFG S + + Sbjct 1750 RSVFQNVKPDTTVLTSMLSTGIFGCSVTDSATTLLSNL 1787 >sp|Q9V0Y3|Y656_PYRAB Uncharacterized protein PYRAB06560 OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=PYRAB06560 PE=4 SV=2 Length=183 Score = 114 bits (284), Expect = 3e-27, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 72/181 (40%), Gaps = 32/181 (18%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD----DYIAT 275 + + DI + K +VNAAN YL+HGGGVA A+ KA + + + Sbjct 2 FRVVHGDIT----RFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQ 57 Query 276 NGP--LKVGGSCVLSGHNLA----KHCLHVVGPNVN---KGEDIQLLKSAYENFNQH--- 323 G ++ G V NLA K+ +H VGP + + L+ A + Sbjct 58 IGRDWIEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADE 117 Query 324 ---EVLLAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLYDKLVSS 371 + P +SAGI+G ++ V T+VYL ++ + Y+ + Sbjct 118 LGVRSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEVALKV 177 Query 372 F 372 Sbjct 178 L 178 >sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX=360393 GN=rep PE=2 SV=1 Length=6733 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 39/158 (25%), Positives = 63/158 (40%), Gaps = 10/158 (6%) Query 204 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVK----PTVVVNAANVYLKHGGGVAGALNK 259 + N + + +V + D +K VVN AN LKHGGG+A ++ Sbjct 1630 ELPFNQYYEFKVGRASVVLVQDDFKSVYDFLKSEQGVDYVVNPANNQLKHGGGIAKVISC 1689 Query 260 ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK--HCLHVVGPNVNKGEDIQLLKS-- 315 + S++YI L V + G L K +HVVGP + + L++ Sbjct 1690 MCGPKLTSWSNNYIKQYKKLGVTCAIRSPGFQLGKGVQIIHVVGPKSADSDVVNKLEASW 1749 Query 316 --AYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTV 351 ++N +L +LS GIFG S + + Sbjct 1750 RSVFQNVKPDTTVLTSMLSTGIFGCSVTDSATTLLSNL 1787 >sp|Q6X2U2|POLN_RUBVC Non-structural polyprotein p200 OS=Rubella virus (strain BRDII) OX=376263 PE=3 SV=1 Length=2116 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 41/181 (23%), Positives = 66/181 (36%), Gaps = 18/181 (10%) Query 170 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 229 S + EV + TP + + Y + V+++ +I++ Sbjct 769 DPASPISAEPADRARDAEPEVACEPGGPATPARADPDSDIVESYARAAGPVHLRVRNIMD 828 Query 230 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 289 K VVVNAAN L G GV GA+ + ++ + P G + G Sbjct 829 PPPGCK--VVVNAANEGLLAGSGVCGAIFASAAASLAEDCRRL----APCPTGEAVATPG 882 Query 290 HNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFG 337 H H +H V P + + LL+ AY + + + PLL AGI+G Sbjct 883 HGCGYAHIIHAVAPRRPQDPAALEQSEALLERAYRSIVALAAARRWTCVACPLLGAGIYG 942 Query 338 A 338 Sbjct 943 W 943 >sp|Q99IE5|POLN_RUBVV Non-structural polyprotein p200 OS=Rubella virus (strain TO-336) OX=376264 PE=3 SV=1 Length=2116 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 18/169 (11%) Query 187 IVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVY 246 +EV + TP + + Y + V+++ DI++ K VVVNAAN Sbjct 786 ELEVAYEPSDPPTPTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEG 843 Query 247 LKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVN 305 L G GV GA+ A+ + P G + GH H +H V P Sbjct 844 LLAGSGVCGAIFANATAALAADCRRL----APCPTGEAVATPGHGCGYTHIIHAVAPRRP 899 Query 306 KG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHS 343 + E LL+ AY + + + PLL AG++G S Sbjct 900 RDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVYGWSAAES 948 >sp|Q99IE7|POLN_RUBVO Non-structural polyprotein p200 OS=Rubella virus (strain TO-336 vaccine) OX=376265 PE=3 SV=1 Length=2116 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 18/169 (11%) Query 187 IVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVY 246 +EV + TP + + Y + V+++ DI++ K VVVNAAN Sbjct 786 ELEVAYEPSDPPTPTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEG 843 Query 247 LKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVN 305 L G GV GA+ A+ + P G + GH H +H V P Sbjct 844 LLAGSGVCGAIFANATAALAADCRRL----APCPTGEAVATPGHGCGYTHIIHAVAPRRP 899 Query 306 KG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHS 343 + E LL+ AY + + + PLL AG++G S Sbjct 900 RDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVYGWSAAES 948 >sp|Q6X2U4|POLN_RUBVB Non-structural polyprotein p200 OS=Rubella virus (strain BRD1) OX=376262 PE=3 SV=1 Length=2116 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 65/183 (36%), Gaps = 18/183 (10%) Query 168 QTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADI 227 S + EV + TP + + Y + V+++ +I Sbjct 767 AGDPASPISAEPADRARDAEPEVACEPGGPATPTRADPDSDIVESYARAAGPVHLRVRNI 826 Query 228 VEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVL 287 ++ K VVVNAAN L G GV GA+ + + + P G + Sbjct 827 MDPPPGCK--VVVNAANEGLLAGSGVCGAIFASAAATLAEDCRRL----APCPTGEAVAT 880 Query 288 SGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGI 335 GH H +H V P + + LL+ AY + + + PLL AGI Sbjct 881 PGHGCGYTHIIHAVAPRRPQDPAALEQSEALLERAYRSVVALAAARRWACVACPLLGAGI 940 Query 336 FGA 338 +G Sbjct 941 YGW 943 >sp|Q8V294|POLN_EEVVC Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain CPA201) OX=376610 PE=3 SV=3 Length=2497 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 56/269 (21%), Positives = 105/269 (39%), Gaps = 34/269 (13%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + ++ DI + V+VNAAN + G GV GAL + + ++ Sbjct 1329 CAPSYHVVRGDIATATEG----VIVNAANSKGQPGSGVCGALYRKYPESFDLQ------- 1377 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 326 P++VG + ++ G+ +KH +H VGPN NK +++ L AYE N N + + Sbjct 1378 --PIEVGKARLVKGN--SKHLIHAVGPNFNKVSEVEGDKQLAEAYESIARIINDNNYRSV 1433 Query 327 LAPLLSAGIFGADPI------HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS GIF + + L +DT +V + DK L ++ ++ Sbjct 1434 AIPLLSTGIFAGNKDRLMQSLNHLLTALDTTDADVAIYCRDKKWEVTLKEVVARREAVEE 1493 Query 381 V-EQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVE--EVTTTLEETKFLTENLLL 437 + + + + + + + K S+ RK E T + K + E + Sbjct 1494 ICISEDSSVAEPDAELVRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDMAE-INA 1552 Query 438 YIDINGNLHPDSATLVSDIDITFLKKDAP 466 + + ++ ++ P Sbjct 1553 MWPAATEANEQVCLYILGESMSSIRSKCP 1581 >sp|Q9WJC7|POLN_EEVVM Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain Mena II) OX=36384 PE=3 SV=3 Length=2499 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 50/211 (24%), Positives = 90/211 (43%), Gaps = 31/211 (15%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + ++ DI + V+VNAAN + G GV GAL + + ++ Sbjct 1329 CAPSYHVVRGDIATATEG----VIVNAANSKGQPGSGVCGALYRKYPESFDLQ------- 1377 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 326 P++VG + ++ G +KH +H VGPN +K +++ L AYE N N + + Sbjct 1378 --PIEVGKARLVKGS--SKHIIHAVGPNFSKVSEVEGDKQLAEAYESIAKIINDNNYRSV 1433 Query 327 LAPLLSAGIFGADPI------HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS GIF + + L +DT +V + DK L ++ ++ Sbjct 1434 AIPLLSTGIFAGNKDRLMQSLNHLLTALDTTDADVAIYCRDKKWEVTLKEVVARREAVEE 1493 Query 381 V-EQKIAEIPKEEVKPFITESKPSVEQRKQD 410 + + + + + + + K S+ RK Sbjct 1494 ICISEDSSVAEPDAELVRVHPKSSLAGRKGY 1524 >sp|O40955|POLN_RUBVR Non-structural polyprotein p200 OS=Rubella virus (strain RA27/3 vaccine) OX=11044 PE=1 SV=1 Length=2116 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 46/180 (26%), Positives = 69/180 (38%), Gaps = 18/180 (10%) Query 187 IVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVY 246 +EV + T + + Y + V+++ DI++ K VVVNAAN Sbjct 786 ELEVAYEPSGPPTSTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEG 843 Query 247 LKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVN 305 L G GV GA+ A+ + P G + GH H +H V P Sbjct 844 LLAGSGVCGAIFANATAALAADCRRL----APCPTGEAVATPGHGCGYTHIIHAVAPRRP 899 Query 306 KG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 354 + E LL+ AY + + + PLL AG++G SLR + RT Sbjct 900 RDPAALEEGEALLERAYRSIVALAAARRWARVACPLLGAGVYGWSAAESLRAALAATRTE 959 >sp|Q9J6K9|POLN_RUBVD Non-structural polyprotein p200 OS=Rubella virus (strain Cendehill) OX=376266 PE=3 SV=2 Length=2116 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 20/186 (11%) Query 170 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 229 V ++ + V +P T ++ Y + V+++ DI++ Sbjct 771 VPPTPAEPADRARDAELEVAYEPSGPPTSTKADPDSDIVE--SYARAAGPVHLRVRDIMD 828 Query 230 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 289 K VVVNAAN L G GV GA+ A+ + P G + G Sbjct 829 PPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL----APCPTGEAVATPG 882 Query 290 HNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFG 337 H H +H V P + E LL+ AY + + + PLL AG++G Sbjct 883 HGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAARRWAYVACPLLGAGVYG 942 Query 338 ADPIHS 343 S Sbjct 943 WSAAES 948 >sp|O28751|Y1521_ARCFU ADP-ribose glycohydrolase AF_1521 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=AF_1521 PE=1 SV=2 Length=192 Score = 106 bits (264), Expect = 2e-24, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 69/179 (39%), Gaps = 30/179 (17%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVES----DDYIAT 275 + + DI + +VNAAN L+HGGGVA A+ KA + + Sbjct 14 LKLAQGDITQ----YPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQ 69 Query 276 NGP--LKVGGSCVLSGHNL----AKHCLHVVGPNVNKGEDIQLLKSAYENFN-------- 321 G + G V NL K+ H VGP + +L + Y+ F Sbjct 70 FGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEE 129 Query 322 -QHEVLLAPLLSAGIFGADPIHSLRVCVDTVR-------TNVYLAVFDKNLYDKLVSSF 372 E + P +SAGI+G D + ++ V+ V L ++D+ + + F Sbjct 130 MGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVF 188 >sp|Q86500|POLN_RUBVM Non-structural polyprotein p200 OS=Rubella virus (strain M33) OX=11043 PE=1 SV=2 Length=2116 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 68/186 (37%), Gaps = 20/186 (11%) Query 170 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 229 V ++ + V +P T ++ Y + V+++ DI++ Sbjct 771 VPPTTAEPADRARHAELEVVYEPSGPPTSTKADPDSDIVE--SYARAAGPVHLRVRDIMD 828 Query 230 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 289 K VVVNAAN L G GV GA+ A+ + P +G + G Sbjct 829 PPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL----APCPIGEAVATPG 882 Query 290 HNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFG 337 H H +H V P + E LL+ AY + + + PLL AG++G Sbjct 883 HGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAARRWARVACPLLGAGVYG 942 Query 338 ADPIHS 343 S Sbjct 943 WSAAES 948 >sp|P0DC29|ADPRH_STRPQ Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) OX=193567 GN=SPs1056 PE=3 SV=1 Length=270 Score = 101 bits (252), Expect = 3e-22, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 59/150 (39%), Gaps = 22/150 (15%) Query 222 IKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDYIATN 276 + + DI + + +VNAAN L G + A++ + +++ + Sbjct 88 LYHGDI----RYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQ 143 Query 277 G-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-----LLKSAYENF------NQH 323 G +G + + S ++L A + +H VGP + KG + LL Y + Sbjct 144 GRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGHHVSPIRADLLARCYRSSLDLAVKAGL 203 Query 324 EVLLAPLLSAGIFGADPIHSLRVCVDTVRT 353 L +S G FG + ++ + TV Sbjct 204 TSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|P0DC28|ADPRH_STRP3 Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) OX=198466 GN=SpyM3_0856 PE=3 SV=1 Length=270 Score = 101 bits (252), Expect = 3e-22, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 59/150 (39%), Gaps = 22/150 (15%) Query 222 IKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDYIATN 276 + + DI + + +VNAAN L G + A++ + +++ + Sbjct 88 LYHGDI----RYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQ 143 Query 277 G-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-----LLKSAYENF------NQH 323 G +G + + S ++L A + +H VGP + KG + LL Y + Sbjct 144 GRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGHHVSPIRADLLARCYRSSLDLAVKAGL 203 Query 324 EVLLAPLLSAGIFGADPIHSLRVCVDTVRT 353 L +S G FG + ++ + TV Sbjct 204 TSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|Q99ZI6|ADPRH_STRP1 Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M1 OX=301447 GN=SPy_1216 PE=3 SV=1 Length=270 Score = 101 bits (252), Expect = 3e-22, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 59/150 (39%), Gaps = 22/150 (15%) Query 222 IKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDYIATN 276 + + DI + + +VNAAN L G + A++ + +++ + Sbjct 88 LYHGDI----RYLAVDAIVNAANSELLGCFSPNHGCIDNAIHTFAGSRLRLACQAIMTEQ 143 Query 277 G-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-----LLKSAYENF------NQH 323 G +G + + S ++L A + +H VGP + KG + LL Y + Sbjct 144 GRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGHHVSPIRADLLARCYRSSLDLAVKAGL 203 Query 324 EVLLAPLLSAGIFGADPIHSLRVCVDTVRT 353 L +S G FG + ++ + TV Sbjct 204 TSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|P0DN70|ADPRH_STRPG Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) OX=160491 GN=SpyM50868 PE=1 SV=1 Length=270 Score = 101 bits (250), Expect = 6e-22, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 59/150 (39%), Gaps = 22/150 (15%) Query 222 IKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDYIATN 276 + + DI + + +VNAAN L G + A++ + +++ + Sbjct 88 LYHGDI----RYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQ 143 Query 277 G-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-----LLKSAYENF------NQH 323 G +G + + S ++L A + +H VGP + KG + LL Y + Sbjct 144 GRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGRHVSPIRADLLARCYRSSLDLAVKAGL 203 Query 324 EVLLAPLLSAGIFGADPIHSLRVCVDTVRT 353 L +S G FG + ++ + TV Sbjct 204 TSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|Q8P0X2|ADPRH_STRP8 Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) OX=186103 GN=spyM18_1168 PE=3 SV=1 Length=270 Score = 101 bits (250), Expect = 6e-22, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 59/150 (39%), Gaps = 22/150 (15%) Query 222 IKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDYIATN 276 + + DI + + +VNAAN L G + A++ + +++ + Sbjct 88 LYHGDI----RYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQ 143 Query 277 G-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-----LLKSAYENF------NQH 323 G +G + + S ++L A + +H VGP + KG + LL Y + Sbjct 144 GRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGRHVSPIRADLLARCYRSSLDLAVKAGL 203 Query 324 EVLLAPLLSAGIFGADPIHSLRVCVDTVRT 353 L +S G FG + ++ + TV Sbjct 204 TSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|Q5XC09|ADPRH_STRP6 Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) OX=286636 GN=M6_Spy0919 PE=3 SV=1 Length=270 Score = 101 bits (250), Expect = 6e-22, Method: Composition-based stats. Identities = 31/150 (21%), Positives = 59/150 (39%), Gaps = 22/150 (15%) Query 222 IKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDYIATN 276 + + DI + + +VNAAN L G + A++ + +++ + Sbjct 88 LYHGDI----RYLAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQ 143 Query 277 G-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-----LLKSAYENF------NQH 323 G +G + + S ++L A + +H VGP + KG + LL Y + Sbjct 144 GRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGRHVSPIRADLLARCYRSSLDLAVKAGL 203 Query 324 EVLLAPLLSAGIFGADPIHSLRVCVDTVRT 353 L +S G FG + ++ + TV Sbjct 204 TSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|Q8U0P9|Y1536_PYRFU Uncharacterized protein PF1536 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=PF1536 PE=4 SV=1 Length=183 Score = 97.9 bits (242), Expect = 1e-21, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 71/178 (40%), Gaps = 32/178 (18%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVE---SDD-YIAT 275 + + DI + + +VNAAN YL+HGGGVA A+ KA ++ S + Sbjct 2 IKVVKGDITK----FRAEAIVNAANKYLEHGGGVAYAIAKAAAGDVREYIRISKEAMREQ 57 Query 276 NGP--LKVGGSCVLSGHNL----AKHCLHVVGPNVNKG---EDIQLLKSAYENFNQH--- 323 G + G V L K+ +H VGP + LK A + Sbjct 58 LGKDWIDHGEVVVTPPLQLEKNGVKYVIHTVGPYCGGSWDEDKKSKLKLAILGALKKADE 117 Query 324 ---EVLLAPLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLV 369 + + P +SAGI+G + V+ V+ V+L ++ + Y+K + Sbjct 118 LGVKSIAFPAISAGIYGCPLEKVVETFVEVVKEFLPSAKSLREVFLVLYSQEDYEKAL 175 >sp|Q5JER1|Y1890_THEKO Uncharacterized protein TK1890 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=TK1890 PE=4 SV=1 Length=180 Score = 97.6 bits (241), Expect = 1e-21, Method: Composition-based stats. Identities = 42/176 (24%), Positives = 69/176 (39%), Gaps = 32/176 (18%) Query 222 IKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVE---SDD-YIATNG 277 I DI + +VNAAN YL+HGGGVA A+ KA + S + G Sbjct 6 IVKGDIT----RFPAEAIVNAANRYLEHGGGVAYAIAKAAAGDPREYIRISKEAMREQLG 61 Query 278 P--LKVGGSCVLSGHNLAKH----CLHVVGPNVN---KGEDIQLLKSAYENFNQH----- 323 ++ G V L KH +H VGP + + L+ A + Sbjct 62 KDHIEHGEVVVTPAMRLEKHGIRYVIHTVGPYCGGIWDEDKKEKLRKAILGALRKAEELG 121 Query 324 -EVLLAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLYDKLV 369 + + P +SAGI+G ++ + + VYL ++ + Y++ + Sbjct 122 VKTIAFPAVSAGIYGCPLEEVVKTFKEVIDEFEREAGSVERVYLVLYSEKDYERAL 177 >sp|Q8NYB7|ADPRH_STAAW Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0302 PE=3 SV=1 Length=266 Score = 97.9 bits (242), Expect = 8e-21, Method: Composition-based stats. Identities = 34/151 (23%), Positives = 64/151 (42%), Gaps = 21/151 (14%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDY 272 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 273 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ----LLKSAY----ENFNQ 322 I G + VG + + G+NL AK+ +H VGP + + + LL Y + +Q Sbjct 141 IRQQGRNEGVGKAKITRGYNLPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQ 200 Query 323 HEV--LLAPLLSAGIFGADPIHSLRVCVDTV 351 H + + +S G+F + + V TV Sbjct 201 HSLNHVAFCCISTGVFAFPQDEAAEIAVRTV 231 >sp|Q6GCE6|ADPRH_STAAS Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0302 PE=3 SV=1 Length=266 Score = 97.9 bits (242), Expect = 8e-21, Method: Composition-based stats. Identities = 34/151 (23%), Positives = 64/151 (42%), Gaps = 21/151 (14%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDY 272 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 273 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ----LLKSAY----ENFNQ 322 I G + VG + + G+NL AK+ +H VGP + + + LL Y + +Q Sbjct 141 IRQQGRNEGVGKAKITRGYNLPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQ 200 Query 323 HEV--LLAPLLSAGIFGADPIHSLRVCVDTV 351 H + + +S G+F + + V TV Sbjct 201 HSLNHVAFCCISTGVFAFPQDEAAEIAVRTV 231 >sp|Q5HIW9|ADPRH_STAAC Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0396 PE=3 SV=1 Length=266 Score = 97.6 bits (241), Expect = 9e-21, Method: Composition-based stats. Identities = 34/151 (23%), Positives = 64/151 (42%), Gaps = 21/151 (14%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDY 272 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 273 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ----LLKSAY----ENFNQ 322 I G + VG + + G+NL AK+ +H VGP + + + LL Y + +Q Sbjct 141 IRQQGRNEGVGKAKITRGYNLSAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQ 200 Query 323 HEV--LLAPLLSAGIFGADPIHSLRVCVDTV 351 H + + +S G+F + + V TV Sbjct 201 HSLNHVAFCCISTGVFAFPQDEAAEIAVRTV 231 >sp|Q93RG0|ADPRH_TREMD Protein-ADP-ribose hydrolase OS=Treponema medium OX=58231 PE=3 SV=1 Length=261 Score = 97.6 bits (241), Expect = 1e-20, Method: Composition-based stats. Identities = 38/182 (21%), Positives = 67/182 (37%), Gaps = 32/182 (18%) Query 217 TDNVYIKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDD 271 + Y+ DI +K +VNAAN + + ++ ++ Sbjct 84 NGDWYVWRGDITT----LKVDAIVNAANSGMTGCWQPCHACIDNCIHTFAGVQLRTVCAG 139 Query 272 YIATNG-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNK---GEDIQLLKSAYENF------ 320 + G G + + NL K+ LH VGP ++ D LL ++Y + Sbjct 140 IMQEQGHEEPTGTAKITPAFNLPCKYVLHTVGPIISGQLTDRDCTLLANSYTSCLNLAAE 199 Query 321 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVF---DKNLYDKL 368 N + + +S G+F + + V TV + VF D+ LY+KL Sbjct 200 NGVKSIAFCCISTGVFRFPAQKAAEIAVATVEDWKAKNNSAMKIVFNVFSEKDEALYNKL 259 Query 369 VS 370 +S Sbjct 260 MS 261 >sp|Q4QXJ8|POLN_EEEVF Polyprotein P1234 OS=Eastern equine encephalitis virus (strain Florida 91-469) OX=374598 PE=1 SV=3 Length=2494 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 94/268 (35%), Gaps = 47/268 (18%) Query 221 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 280 + DI + V+VNAAN + G GV GAL + A + P+ Sbjct 1332 RVVRGDITKS----NDEVIVNAANNKGQPGSGVCGALYRKWPGAFDKQ---------PVA 1378 Query 281 VGGSCVLSGHNLAKHCLHVVGPNVNK---GEDIQLLKSAYE------NFNQHEVLLAPLL 331 G + ++ + + +H VGPN ++ E Q L Y N + + PLL Sbjct 1379 TGKAHLVKH---SPNVIHAVGPNFSRLSENEGDQKLSEVYMDIARIINNERFTKVSIPLL 1435 Query 332 SAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI 385 S GI+ ++ L +DT ++ + DK ++ + +S +++ + Sbjct 1436 STGIYAGGKDRVMQSLNHLFTAMDTTDADITIYCLDKQWESRIKEAITRKESVEELTEDD 1495 Query 386 AEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNL 445 + E V S+ R +V + LE T+F I + Sbjct 1496 RPVDIELV---RVHPLSSLAGRPGYS----TTEGKVYSYLEGTRF--HQTAKDIAEIYAM 1546 Query 446 HPDSATL-------VSDIDITFLKKDAP 466 P+ V + ++ P Sbjct 1547 WPNKQEANEQICLYVLGESMNSIRSKCP 1574 >sp|Q6GJZ1|ADPRH_STAAR Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0322 PE=3 SV=1 Length=266 Score = 97.2 bits (240), Expect = 1e-20, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 21/151 (14%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDY 272 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 273 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQL----LKSAYENFNQHEV- 325 I G + VG + + G+NL AK+ +H VGP + + +L L Y + + Sbjct 141 IRQQGRNEGVGKAKITRGYNLPAKYIIHTVGPQIRRLPVSKLNQDLLAKCYLSCLKLADQ 200 Query 326 -----LLAPLLSAGIFGADPIHSLRVCVDTV 351 + +S G+F + + V TV Sbjct 201 QSLNHIAFCCISTGVFAFPQDEAAEIAVRTV 231 >sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1 Length=502 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 87/251 (35%), Gaps = 40/251 (16%) Query 192 PQLEMELTPVVQTIE--------VNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAA 243 P+ P + ++ F ++ V + N DI + A +VN Sbjct 17 PKWSTTPVPNYEPGSNESQSSSFLSPFPVDEEINAKVVLWNGDITKLA----ADAIVNTT 72 Query 244 NVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGP 302 N L G ++ +++A + E + G + + G+NL A++ +H VGP Sbjct 73 NESLSDRGALSERVHRAAGPELMQEC---RQQLLGCRTGEAKISEGYNLPARYVIHTVGP 129 Query 303 NVN---KGEDIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 353 N K L S Y N N+ + +++ G P + + TVR Sbjct 130 RYNTKYKTAAESALFSCYRNTMRLVRENKISTIGVCVVNTTKRGYPPEDGAHIALRTVRR 189 Query 354 ----------NVYLAVFDKN--LYDKLVSSFLEMKSEKQ---VEQKIAEIPKEEVKPFIT 398 V V +Y K++ + ++ + +I EE +P I Sbjct 190 FLEKYGSAVDTVAFVVEGAEAVVYAKVMPIYFPRDKLEEAHALTLMPDDIGNEEGEPIIP 249 Query 399 ESKPSVEQRKQ 409 E + + + Sbjct 250 ERQIRIVPKPP 260 >sp|P67344|ADPRH_STAAN Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0314 PE=1 SV=1 Length=266 Score = 95.6 bits (236), Expect = 4e-20, Method: Composition-based stats. Identities = 34/151 (23%), Positives = 63/151 (42%), Gaps = 21/151 (14%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDY 272 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 273 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ----LLKSAY----ENFNQ 322 I G + VG + G+NL AK+ +H VGP + + + LL Y + +Q Sbjct 141 IRQQGRNEGVGKAKKTRGYNLPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQ 200 Query 323 HEV--LLAPLLSAGIFGADPIHSLRVCVDTV 351 H + + +S G+F + + V TV Sbjct 201 HSLNHVAFCCISTGVFAFPQDEAAEIAVRTV 231 >sp|P67343|ADPRH_STAAM Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0325 PE=1 SV=1 Length=266 Score = 95.6 bits (236), Expect = 4e-20, Method: Composition-based stats. Identities = 34/151 (23%), Positives = 63/151 (42%), Gaps = 21/151 (14%) Query 218 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKH-----GGGVAGALNKATNNAMQVESDDY 272 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 273 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ----LLKSAY----ENFNQ 322 I G + VG + G+NL AK+ +H VGP + + + LL Y + +Q Sbjct 141 IRQQGRNEGVGKAKKTRGYNLPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQ 200 Query 323 HEV--LLAPLLSAGIFGADPIHSLRVCVDTV 351 H + + +S G+F + + V TV Sbjct 201 HSLNHVAFCCISTGVFAFPQDEAAEIAVRTV 231 >sp|O67112|Y987_AQUAE Uncharacterized protein aq_987 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_987 PE=4 SV=1 Length=165 Score = 92.2 bits (227), Expect = 6e-20, Method: Composition-based stats. Identities = 31/165 (19%), Positives = 63/165 (38%), Gaps = 27/165 (16%) Query 219 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 278 ++ + I E V V+VN AN GGGVA + + ++ E+ + P Sbjct 2 DIKVVKGSITE----VDADVIVNPANSRGLMGGGVAVVIKRLGGEEIEREAVE----KAP 53 Query 279 LKVGGSCVLSGHNLA-KHCLHVVGPNVNK---GEDIQLLKSAYENFNQ------HEVLLA 328 + VG + + + L K +H P + + + ++ A + +++ Sbjct 54 IPVGSAVLTTAGKLKFKGVIHA--PTMEEPAMPSSEEKVRKATRAALELADKECFKIVAI 111 Query 329 PLLSAGIFGADPIHSLRVCVDTVR-------TNVYLAVFDKNLYD 366 P + G+ G + R V+ +R V L D+ + + Sbjct 112 PGMGTGVGGVPKEVAARAMVEEIRKFEPKCLEKVILVDIDEEMVE 156 >sp|P13896|POLN_WEEV Polyprotein P1234 OS=Western equine encephalitis virus OX=11039 PE=3 SV=3 Length=2467 Score = 99.9 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 78/192 (41%), Gaps = 32/192 (17%) Query 221 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 280 + DI + A + +VNAAN + G GV GAL + A + P+ Sbjct 1332 RVIRGDISKSADQ----AIVNAANSKGQPGSGVCGALYRKWPAAFDRQ---------PIA 1378 Query 281 VGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLL 331 VG + ++ L +H VGPN +K + + L +AY N + + PLL Sbjct 1379 VGTARLVKHEPL---IIHAVGPNFSKMPEPEGDLKLAAAYMSIASIVNAERITKISVPLL 1435 Query 332 SAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQV-EQK 384 S GI+ +H L DT +V + DK +++ + +S + + + K Sbjct 1436 STGIYSGGKDRVMQSLHHLFTAFDTTDADVTIYCLDKQWETRIIEAIHRKESVEILDDDK 1495 Query 385 IAEIPKEEVKPF 396 +I V P Sbjct 1496 PVDIDLVRVHPN 1507 >sp|P27283|POLN_SINDO Polyprotein P1234 OS=Sindbis virus subtype Ockelbo (strain Edsbyn 82-5) OX=31699 PE=3 SV=2 Length=2515 Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 51/257 (20%), Positives = 98/257 (38%), Gaps = 36/257 (14%) Query 229 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 288 E + VVNAAN + G GV A+ K N+ + + G + + Sbjct 1356 ENIADCQEEAVVNAANPLGRPGEGVCRAIYKRWPNSFTDSATE---------TGTAKLTV 1406 Query 289 GHNLAKHCLHVVGPNVNKG---EDIQLLKSAYEN----FNQH--EVLLAPLLSAGIFGAD 339 H K +H VGP+ K E ++LL++AY N+H + + PLLS GI+ A Sbjct 1407 CH--GKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAG 1464 Query 340 PI------HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEV 393 + L +D +V + DK +++ + K+ ++ + E Sbjct 1465 KDRLEVSLNCLTTALDRTDADVTIYCLDKKWKERI----DAVLQLKESVTELKDEDMEID 1520 Query 394 KPFI-TESKPSVEQRK---QDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDS 449 + ++ RK K+ + E T + K + E +L+ + + + Sbjct 1521 DELVWIHPDSCLKGRKGFSTTKGKLYSYF-EGTKFHQAAKDMAEIKVLFPN-DQESNEQL 1578 Query 450 ATLVSDIDITFLKKDAP 466 + + +++ P Sbjct 1579 CAYILGETMEAIREKCP 1595 >sp|Q306W6|POLN_EEEV1 Polyprotein P1234 OS=Eastern equine encephalitis virus (strain PE-0.0155) OX=374596 PE=1 SV=3 Length=2471 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 95/268 (35%), Gaps = 47/268 (18%) Query 221 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 280 + DI + V+VNAAN + G GV GAL K A P+ Sbjct 1332 RVIRGDISKS----TDEVIVNAANNKGQPGAGVCGALYKKWPGAFDKA---------PIA 1378 Query 281 VGGSCVLSGHNLAKHCLHVVGPNVNK---GEDIQLLKSAYE------NFNQHEVLLAPLL 331 G + ++ + +H VGPN ++ E Q L Y N ++ + PLL Sbjct 1379 TGTAHLVKH---TPNIIHAVGPNFSRMSEVEGNQKLSEVYMDIAKIINKERYNKVSIPLL 1435 Query 332 SAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI 385 S G++ ++ L +DT +V + DK ++ + +S +++ + Sbjct 1436 STGVYAGGKDRVMQSLNHLFTAMDTTDADVTIYCLDKQWETRIKDAIARKESVEELVEDD 1495 Query 386 AEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNL 445 + E V + S+ R +V + LE T+F I + Sbjct 1496 KPVDIELV---RVHPQSSLVGRPGYSTNE----GKVHSYLEGTRF--HQTAKDIAEIYAM 1546 Query 446 HPDSATL-------VSDIDITFLKKDAP 466 P+ V +T ++ P Sbjct 1547 WPNKQEANEQICLYVLGESMTSIRSKCP 1574 >sp|P03317|POLN_SINDV Polyprotein P1234 OS=Sindbis virus OX=11034 PE=1 SV=2 Length=2513 Score = 97.9 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 36/257 (14%) Query 229 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 288 E + VVNAAN + G GV A+ K + + + G + + Sbjct 1356 ENIADCQEEAVVNAANPLGRPGEGVCRAIYKRWPTSFTDSATE---------TGTARMTV 1406 Query 289 GHNLAKHCLHVVGPNVNKG---EDIQLLKSAYEN----FNQH--EVLLAPLLSAGIFGAD 339 L K +H VGP+ K E ++LL++AY N+H + + PLLS GI+ A Sbjct 1407 C--LGKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAG 1464 Query 340 PI------HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEV 393 + L +D +V + DK +++ K+ ++ + E Sbjct 1465 KDRLEVSLNCLTTALDRTDADVTIYCLDKKWKERI----DAALQLKESVTELKDEDMEID 1520 Query 394 KPFI-TESKPSVEQRK---QDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDS 449 + ++ RK K+ + E T + K + E +L+ + + + Sbjct 1521 DELVWIHPDSCLKGRKGFSTTKGKLYSYF-EGTKFHQAAKDMAEIKVLFPN-DQESNEQL 1578 Query 450 ATLVSDIDITFLKKDAP 466 + + +++ P Sbjct 1579 CAYILGETMEAIREKCP 1595 >sp|Q7TZB9|Y1934_MYCBO Uncharacterized protein Mb1934c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=lppD PE=4 SV=1 Length=358 Score = 93.7 bits (231), Expect = 1e-18, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 16/156 (10%) Query 208 NSFSGYLKLTDNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQ 266 + DNV + ++ + + K++ + NAAN L+H GGVA A+ +A +Q Sbjct 174 SPRPPSTCRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQ 233 Query 267 VESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVV-----GPNVNK---GEDIQLLKSAY 317 ES + P+ +G + + ++ A++ +H GP + L+ A Sbjct 234 RESTE----KAPIGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATLRKAD 289 Query 318 ENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 353 E L G+ G + R+ V VR Sbjct 290 E--LGCRSLALVAFGTGVGGFPLDDAARLMVGAVRR 323 >sp|P9WK29|Y1899_MYCTU Uncharacterized protein Rv1899c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv1899c PE=1 SV=1 Length=359 Score = 93.7 bits (231), Expect = 1e-18, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 16/156 (10%) Query 208 NSFSGYLKLTDNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQ 266 + DNV + ++ + + K++ + NAAN L+H GGVA A+ +A +Q Sbjct 175 SPRPPSTCRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQ 234 Query 267 VESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVV-----GPNVNK---GEDIQLLKSAY 317 ES + P+ +G + + ++ A++ +H GP + L+ A Sbjct 235 RESTE----KAPIGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATLRKAD 290 Query 318 ENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 353 E L G+ G + R+ V VR Sbjct 291 E--LGCRSLALVAFGTGVGGFPLDDAARLMVGAVRR 324 >sp|P9WK28|Y1899_MYCTO Uncharacterized protein MT1950 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1950 PE=4 SV=1 Length=374 Score = 93.7 bits (231), Expect = 1e-18, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 16/156 (10%) Query 208 NSFSGYLKLTDNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQ 266 + DNV + ++ + + K++ + NAAN L+H GGVA A+ +A +Q Sbjct 190 SPRPPSTCRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQ 249 Query 267 VESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVV-----GPNVNK---GEDIQLLKSAY 317 ES + P+ +G + + ++ A++ +H GP + L+ A Sbjct 250 RESTE----KAPIGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATLRKAD 305 Query 318 ENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 353 E L G+ G + R+ V VR Sbjct 306 E--LGCRSLALVAFGTGVGGFPLDDAARLMVGAVRR 339 >sp|Q86924|POLN_AURAV Polyprotein P1234 OS=Aura virus OX=44158 PE=3 SV=3 Length=2499 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 89/250 (36%), Gaps = 32/250 (13%) Query 234 VKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA 293 VVNAAN K G GV A+ K + + + + V + + HN Sbjct 1359 CTEEAVVNAANARGKPGDGVCRAIFKKWPKSFENATTE---------VETAVMKPCHN-- 1407 Query 294 KHCLHVVGPNVNKG---EDIQLLKSAY----ENFNQHEV--LLAPLLSAGIFGADPI--- 341 K +H VGP+ K E +LL++AY + N+ + + PLLS GI+ A Sbjct 1408 KVVIHAVGPDFRKYTLEEATKLLQNAYHDVAKIVNEKGISSVAIPLLSTGIYAAGADRLD 1467 Query 342 ---HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFIT 398 L +D +V + DK ++ + E+ E K +I +E Sbjct 1468 LSLRCLFTALDRTDADVTIYCLDKKWEQRIADAIR--MREQVTELKDPDIEIDEGL-TRV 1524 Query 399 ESKPSVEQRKQDDKKIKACVE--EVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDI 456 ++ + E T + K + E L+ D+ + Sbjct 1525 HPDSCLKDHIGYSTQYGKLYSYFEGTKFHQTAKDIAEIRALFPDVQ-AANEQICLYTLGE 1583 Query 457 DITFLKKDAP 466 + +++ P Sbjct 1584 PMESIREKCP 1593 >sp|Q306W8|POLN_EEEV8 Polyprotein P1234 OS=Eastern equine encephalitis virus (strain PE-3.0815) OX=374597 PE=1 SV=3 Length=2474 Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 46/246 (19%), Positives = 80/246 (33%), Gaps = 43/246 (17%) Query 221 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 280 + DI + +VNAAN + G GV GAL K A P+ Sbjct 1332 RVIRGDISKS----TDEAIVNAANNKGQPGAGVCGALYKKWPGAFDKV---------PIA 1378 Query 281 VGGSCVLSGHNLAKHCLHVVGPNVNKGEDI---QLLKSAYENFNQ------HEVLLAPLL 331 G + ++ + +H VGPN ++ ++ Q L Y + + + + PLL Sbjct 1379 TGTAHLVKH---TPNIIHAVGPNFSRVSEVEGNQKLSEVYMDIAKIINRERYNKVSIPLL 1435 Query 332 SAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKL---------VSSFLEMK 376 S GI+ ++ L +DT +V + DK ++ V +E Sbjct 1436 STGIYAGGKDRVMQSLNHLFTAMDTTDADVTIYCLDKQWEARIKDAIARKESVEELVEDD 1495 Query 377 SEKQVEQ---KIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTE 433 +E E K + + E+ + E Sbjct 1496 KPVDIELVRVHPLSSLVGRPGYSTDEGKVHSYLEGTRFHQTAKDIAEIYAMWPNKQEANE 1555 Query 434 NLLLYI 439 + LY+ Sbjct 1556 QICLYV 1561 >sp|O75367|H2AY_HUMAN Core histone macro-H2A.1 OS=Homo sapiens OX=9606 GN=MACROH2A1 PE=1 SV=5 Length=369 Score = 90.6 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 38/184 (21%), Positives = 65/184 (35%), Gaps = 22/184 (12%) Query 211 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 270 + L L + + ADI + VV+ N GG V L K Sbjct 188 TKSLFLGQKLQVVQADIAS----IDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVL 243 Query 271 DYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN------FNQH 323 + NGPL+V G+ V +GH L AK +H P + +LL+ +N + Sbjct 244 ELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKL 303 Query 324 EVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSSF 372 + + P + +G G + ++ + + VY +FD V Sbjct 304 KSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEM 363 Query 373 LEMK 376 ++ Sbjct 364 AKLD 367 >sp|Q02874|H2AY_RAT Core histone macro-H2A.1 OS=Rattus norvegicus OX=10116 GN=Macroh2a1 PE=1 SV=5 Length=368 Score = 90.2 bits (222), Expect = 1e-17, Method: Composition-based stats. Identities = 38/184 (21%), Positives = 65/184 (35%), Gaps = 22/184 (12%) Query 211 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 270 + L L + + ADI + VV+ N GG V L K Sbjct 187 TKSLFLGQKLQVVQADIAS----IDSDAVVHPTNADFYIGGEVGSTLEKKGGKEFVEAVL 242 Query 271 DYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN------FNQH 323 + NGPL+V G+ V +GH L AK +H P + +LL+ +N + Sbjct 243 ELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDRKL 302 Query 324 EVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSSF 372 + + P + +G G + ++ + + VY +FD V Sbjct 303 KSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEM 362 Query 373 LEMK 376 ++ Sbjct 363 AKLD 366 >sp|Q2KIX2|GDAP2_BOVIN Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus OX=9913 GN=GDAP2 PE=2 SV=1 Length=497 Score = 91.8 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 105/324 (32%), Gaps = 47/324 (15%) Query 160 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 219 D L SQ S N E+ + E T + F + Sbjct 2 DPLGAPSQFVDVDTLPSWGNSCEDQLNASEIAAETYQEET------IRSPFLYNKDINGK 55 Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V + D+ + T +VN +N L V+ ++ ++ + Sbjct 56 VVLWKGDV----ALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKEDLQKLR----GC 107 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAP 329 + G + + G NL A+ +H VGP + L S Y N Q + Sbjct 108 RTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFC 167 Query 330 LLSAGIFGADPIHSLRVCVDTVR----------TNVYLAV--FDKNLYDKLVSSFLEMKS 377 ++++ G + + + TVR V AV ++ Y KL+ + Sbjct 168 VINSAKRGYPLEDATHIALRTVRRFLEIHGETLEKVVFAVSELEEATYQKLLPLYF---- 223 Query 378 EKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL 437 + ++++ +P E +P V +R+ + E+ EE + L +L Sbjct 224 PRSLKEESRSLPCLPADIGNAEGEPVVPERQIRISEKPGAPED--NQEEEDEGLGVDLSF 281 Query 438 -----YIDINGNLHPDSATLVSDI 456 + + G++ ++ Sbjct 282 IGSHAFARMEGDIDKQRRLILQGQ 305 >sp|O93327|H2AY_CHICK Core histone macro-H2A.1 OS=Gallus gallus OX=9031 GN=MACROH2A1 PE=1 SV=4 Length=369 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 64/184 (35%), Gaps = 22/184 (12%) Query 211 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 270 + L L + + ADI + VV+ N GG V L K Sbjct 188 TKSLFLGQKLQVVQADI----ATIDSDAVVHPTNSDFYTGGEVGSTLEKKGGKEFVEAVI 243 Query 271 DYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENF------NQH 323 + NGPL + G+ V +GH L AK +H P + +LL+ +N + Sbjct 244 ELRKKNGPLDIAGAVVSAGHGLPAKFVIHCNSPGWGSDKCEELLEKTVKNCLALADEKKL 303 Query 324 EVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSSF 372 + + P + +G G + ++ + + VY +FD V Sbjct 304 KSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEM 363 Query 373 LEMK 376 ++ Sbjct 364 AKLD 367 >sp|Q9QZQ8|H2AY_MOUSE Core histone macro-H2A.1 OS=Mus musculus OX=10090 GN=Macroh2a1 PE=1 SV=4 Length=369 Score = 89.9 bits (221), Expect = 2e-17, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 22/184 (12%) Query 211 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 270 + L L + + ADI + VV+ N GG V L K Sbjct 188 TKSLFLGQKLQVVQADIAS----IDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVL 243 Query 271 DYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN------FNQH 323 + NGPL+V G+ + +GH L AK +H P + +LL+ +N + Sbjct 244 ELRKKNGPLEVAGAAISAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDRKL 303 Query 324 EVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSSF 372 + + P + +G G + ++ + + VY +FD V Sbjct 304 KSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFMLFDSESIGIYVQEM 363 Query 373 LEMK 376 ++ Sbjct 364 AKLD 367 >sp|Q8JUX6|POLN_CHIKS Polyprotein P1234 OS=Chikungunya virus (strain S27-African prototype) OX=371094 PE=1 SV=1 Length=2474 Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 38/230 (17%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +K DI + VVNAAN G GV A+ K + Sbjct 1333 CAPSYRVKRMDIAKN----DEECVVNAANPRGLPGDGVCKAVYKKWPESF---------K 1379 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGP---NVNKGEDIQLLKSAYENFNQH------EVL 326 N VG + + +H VGP N ++ E + L +AY + + Sbjct 1380 NSATPVGTAKTVMCGTYP--VIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSV 1437 Query 327 LAPLLSAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS G++ ++ L +D+ +V + DK ++K +S ++M+++ + Sbjct 1438 AIPLLSTGVYSGGKDRLTQSLNHLFTAMDSTDADVVIYCRDKE-WEKKISEAIQMRTQVE 1496 Query 381 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKF 430 + + I + V S+ RK A + LE T+F Sbjct 1497 LLDEHISIDCDVV---RVHPDSSLAGRKGYSTTEGAL----YSYLEGTRF 1539 >sp|Q5XXP4|POLN_CHIK3 Polyprotein P1234 OS=Chikungunya virus (strain 37997) OX=371095 PE=1 SV=1 Length=2474 Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 45/230 (20%), Positives = 86/230 (37%), Gaps = 38/230 (17%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +K DI + VVNAAN G GV A+ K + Sbjct 1333 CAPSYRVKRMDIAKN----DEECVVNAANPRGLPGDGVCKAVYKKWPESF---------K 1379 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGP---NVNKGEDIQLLKSAYENFNQH------EVL 326 N VG + + +H VGP N ++ E + L +AY + + Sbjct 1380 NSATPVGTAKTVMCGTYP--VIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSV 1437 Query 327 LAPLLSAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS G++ ++ L +D+ +V + DK ++K ++ ++M+++ + Sbjct 1438 AIPLLSTGVYSGGKDRLTQSLNHLFTALDSTDADVVIYCRDKE-WEKKIAEAIQMRTQVE 1496 Query 381 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKF 430 + + + + + S+ RK + + LE T+F Sbjct 1497 LLDEHISVDCDII---RVHPDSSLAGRKGYS----TTEGSLYSYLEGTRF 1539 >sp|Q5XGM5|GDAP2_XENLA Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis OX=8355 PE=2 SV=1 Length=496 Score = 89.1 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 47/295 (16%), Positives = 94/295 (32%), Gaps = 39/295 (13%) Query 160 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 219 D L S E P + P + F + + Sbjct 2 DPLGARSCFVDADILPCW---ADVSNEEGEDVPDGGRKDVP--DGGSHSPFPYRKDINEK 56 Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V + D+ + T +VN +N L V+ ++ + + + E + Sbjct 57 VILWKGDV----ALLNCTALVNTSNETLTDKNPVSDSIFRYSGPELLEE----MQKLKGC 108 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAP 329 + G + + G NL A++ +H VGP + L S Y N Q + Sbjct 109 RTGEAKLTKGFNLAARYIIHTVGPKYKTKYRTAAESSLYSCYRNVLQLAKEQGMASVGFC 168 Query 330 LLSAGIFGADPIHSLRVCVDTVR----------TNVYLAVFDKNL--YDKLVSSFLEMKS 377 +++ + + + TVR V AV ++ Y +L+ + Sbjct 169 VITTQKRCYPLDDATHIALRTVRRFLEVHGQALEKVVFAVTEEEEGTYRRLLPLYF---- 224 Query 378 EKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLT 432 + +E++ I ++ +P V +R+ + EE + K L+ Sbjct 225 PRSLEEEQRSILLLPQDIGNSDGEPVVPERQIRISEKPGVQEEDSEEEGLVKDLS 279 >sp|Q9DBL2|GDAP2_MOUSE Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus OX=10090 GN=Gdap2 PE=1 SV=1 Length=498 Score = 89.1 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 46/271 (17%), Positives = 90/271 (33%), Gaps = 40/271 (15%) Query 160 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 219 D L SQ S + EV + + + F + Sbjct 2 DPLGAPSQFVDVDTLLSWGDSYED-----EVDCA-DSTAEAFQEDASRSPFVYSRDVNGK 55 Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V + D+ + T +VN +N L V+ ++ ++ + + Sbjct 56 VVLWKGDV----ALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKED----LQKLKGC 107 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAP 329 + G + + G NL A+ +H VGP + L S Y N Q + Sbjct 108 RTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFC 167 Query 330 LLSAGIFGADPIHSLRVCVDTVR----------TNVYLAV--FDKNLYDKLVSSFLEMKS 377 ++++ G + + + TVR V AV ++ Y KL+ + Sbjct 168 VINSAKRGYPLEDATHIALRTVRRFLEIHGENIEKVVFAVSELEEATYQKLLPLYF---- 223 Query 378 EKQVEQKIAEIPKEEVKPFITESKPSVEQRK 408 + ++++I +P E +P V +R+ Sbjct 224 PRSLKEEIRSLPYLPADIGNAEGEPVVPERQ 254 >sp|O90370|POLN_ONNVI Polyprotein P1234 OS=O'nyong-nyong virus (strain Igbo Ora) OX=79899 PE=3 SV=1 Length=2513 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 46/231 (20%), Positives = 86/231 (37%), Gaps = 40/231 (17%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +K DI + VVNAAN G GV A+ + + Sbjct 1333 CAPSYRVKRMDIAKN----TEECVVNAANPRGVPGDGVCKAVYRKWPESF---------R 1379 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQH------EVL 326 N VG + + +H VGPN + + + L SAY + + Sbjct 1380 NSATPVGTAKTIMCGQYP--VIHAVGPNFSNYSEAEGDRELASAYREVAKEVSRLGVSSV 1437 Query 327 LAPLLSAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS G++ ++ L +D+ +V + DK ++K ++ + ++S+ + Sbjct 1438 AIPLLSTGVYSGGKDRLLQSLNHLFAAMDSTDADVVIYCRDKE-WEKKITEAISLRSQVE 1496 Query 381 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVE-EVTTTLEETKF 430 + + + V S+ +K + VE + + LE T+F Sbjct 1497 LLDDHISVDCDIV---RVHPDSSLA-----GRKGYSTVEGALYSYLEGTRF 1539 >sp|Q9NXN4|GDAP2_HUMAN Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens OX=9606 GN=GDAP2 PE=1 SV=1 Length=497 Score = 87.9 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 104/324 (32%), Gaps = 47/324 (15%) Query 160 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 219 D L SQ S + + + + + F + Sbjct 2 DPLGAPSQFVDVDTLPSWGDSC------QDELNSSDTTAEIFQEDTVRSPFLYNKDVNGK 55 Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V + D+ + T +VN +N L V+ ++ ++ + + Sbjct 56 VVLWKGDV----ALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKED----LQKLKGC 107 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAP 329 + G + + G NL A+ +H VGP + L S Y N Q + Sbjct 108 RTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFC 167 Query 330 LLSAGIFGADPIHSLRVCVDTVR----------TNVYLAVFD--KNLYDKLVSSFLEMKS 377 ++++ G + + + TVR V AV D + Y KL+ + Sbjct 168 VINSAKRGYPLEDATHIALRTVRRFLEIHGETIEKVVFAVSDLEEGTYQKLLPLYF---- 223 Query 378 EKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL 437 + ++++ +P E +P V +R+ + E+ EE + L +L Sbjct 224 PRSLKEENRSLPYLPADIGNAEGEPVVPERQIRISEKPGAPED--NQEEEDEGLGVDLSF 281 Query 438 -----YIDINGNLHPDSATLVSDI 456 + + G++ ++ Sbjct 282 IGSHAFARMEGDIDKQRKLILQGQ 305 >sp|P87515|POLN_BFV Polyprotein P1234 OS=Barmah forest virus OX=11020 PE=3 SV=3 Length=2411 Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 88/266 (33%), Gaps = 43/266 (16%) Query 221 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 280 +K DI VVNAAN G GV GA+ + +A G + Sbjct 1336 RVKRGDISN----APEDAVVNAANQQGVKGAGVCGAIYRKWPDAF-----------GDVA 1380 Query 281 VGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENF------NQHEVLLAPLL 331 +S K +H VGPN +K + + L SAY + + PLL Sbjct 1381 TPTGTAVSKSVQDKLVIHAVGPNFSKCSEEEGDRDLASAYRAAAEIVMDKKITTVAVPLL 1440 Query 332 SAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI 385 S GI+ ++ L D +V + DK K+ + S + V+ + Sbjct 1441 STGIYAGGKNRVEQSLNHLFTAFDNTDADVTIYCMDKTWEKKIKEAIDHRTSVEMVQDDV 1500 Query 386 AEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLY-IDINGN 444 + E + S+ RK V + LE TKF + + + + Sbjct 1501 ----QLEEELVRVHPLSSLAGRKGYSTD----SGRVFSYLEGTKFHQTAVDIAEMQVLWP 1552 Query 445 LHPDSA----TLVSDIDITFLKKDAP 466 +S + ++ P Sbjct 1553 ALKESNEQIVAYTLGESMDQIRGKCP 1578 >sp|Q5CZL1|GDAP2_XENTR Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis OX=8364 PE=2 SV=1 Length=496 Score = 87.5 bits (215), Expect = 4e-16, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 91/247 (37%), Gaps = 44/247 (18%) Query 208 NSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQV 267 + F + V + D+ + T +VN +N L V+ ++ + + + Sbjct 45 SPFPYRNDINKKVILWRGDV----ALLSCTALVNTSNETLTDKNPVSDSIFRYSGPELSE 100 Query 268 ESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH 323 E + + G + + G NL A++ +H VGP + L S Y N Q Sbjct 101 E----MQKLKGCRTGEAKLTKGFNLAARYIIHTVGPKYKTKYRTAAESSLYSCYRNVLQL 156 Query 324 ------EVLLAPLLSAGIFGADPIHSLRVCVDTVR----------TNVYLAVFDKNL--Y 365 + +++ P S + + TVR V AV ++ Y Sbjct 157 AKEQGMASVGFCVIATQKRCYPPEDSTHIALRTVRRFLEAHGAALEKVVFAVTEQEEGTY 216 Query 366 DKLVSSFLEMKSEKQVEQKIAEIP-------KEEVKPFITESKPSVEQRK---QDDKKIK 415 +L+ + + +E++ IP E +P + E + + ++ DD + + Sbjct 217 RRLLPLYF----PRSLEEEQRSIPFLPQDIGNAEGEPVVPERQIRISEKPGGQDDDSEEE 272 Query 416 ACVEEVT 422 V++++ Sbjct 273 GLVKDLS 279 >sp|O90368|POLN_ONNVS Polyprotein P1234 OS=O'nyong-nyong virus (strain SG650) OX=374989 PE=1 SV=1 Length=2513 Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 85/231 (37%), Gaps = 40/231 (17%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +K DI + VVNAAN G GV A+ + + Sbjct 1333 CAPSYRVKRMDIAKN----TEECVVNAANPRGVPGDGVCKAVYRKWPESF---------R 1379 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQH------EVL 326 N VG + + +H VGPN + + + L S Y + + Sbjct 1380 NSATPVGTAKTIMCGQYP--VIHAVGPNFSNYSEAEGDRELASVYREVAKEVSRLGVSSV 1437 Query 327 LAPLLSAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS G++ ++ L +D+ +V + DK ++K ++ + ++S+ + Sbjct 1438 AIPLLSTGVYSGGKDRLLQSLNHLFTAMDSTDADVVIYCRDKE-WEKKITEAISLRSQVE 1496 Query 381 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVE-EVTTTLEETKF 430 + + + V S+ +K + VE + + LE T+F Sbjct 1497 LLDDHISVDCDIV---RVHPDSSLA-----GRKGYSTVEGALYSYLEGTRF 1539 >sp|P13886|POLN_ONNVG Polyprotein P1234 OS=O'nyong-nyong virus (strain Gulu) OX=11028 PE=3 SV=2 Length=2514 Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 85/231 (37%), Gaps = 40/231 (17%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +K DI + VVNAAN G GV A+ + + Sbjct 1333 CAPSYRVKRMDIAKN----TEECVVNAANPRGVPGDGVCKAVYRKWPESF---------R 1379 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQH------EVL 326 N VG + + +H VGPN + + + L S Y + + Sbjct 1380 NSATPVGTAKTIMCGQYP--VIHAVGPNFSNYSEAEGDRELASVYREVAKEVSRLGVSSV 1437 Query 327 LAPLLSAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS G++ ++ L +D+ +V + DK ++K ++ + ++S+ + Sbjct 1438 AIPLLSTGVYSGGKDRLLQSLNHLFAAMDSTDADVVIYCRDKE-WEKKITEAISLRSQVE 1496 Query 381 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVE-EVTTTLEETKF 430 + + + V S+ +K + VE + + LE T+F Sbjct 1497 LLDDHISVDCDIV---RVHPDSSLA-----GRKGYSTVEGALYSYLEGTRF 1539 >sp|Q8QZ73|POLN_MAYAB Polyprotein P1234 OS=Mayaro virus (strain Brazil) OX=374990 PE=1 SV=3 Length=2437 Score = 88.7 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 82/250 (33%), Gaps = 41/250 (16%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 +K ADI + VVNAAN + G GV A+ + A Sbjct 1334 CAPAYAVKRADIATAIE----DAVVNAANHRGQVGDGVCRAVARKWPQAF---------R 1380 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYE---------NFNQHEVL 326 N VG + + + +H VGPN N + + + N + Sbjct 1381 NAATPVGTAKTVKCDE--TYIIHAVGPNFNNTSEAEGDRDLAAAYRAVAAEINRLSISSV 1438 Query 327 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS GIF A L +DT V + DK K+ + + + Sbjct 1439 AIPLLSTGIFSAGKDRVHQSLSHLLAAMDTTEARVTIYCRDKTWEQKIKTVLQNRSATEL 1498 Query 381 V--EQKIAEIPKEEVKPFITESKP-------SVEQRKQDDKKIKACVE--EVTTTLEETK 429 V E + +P ++ + K +A ++ E+TT + Sbjct 1499 VSDELQFEVNLTRVHPDSSLVGRPGYSTTDGTLYSYMEGTKFHQAALDMAEITTLWPRVQ 1558 Query 430 FLTENLLLYI 439 E++ LY Sbjct 1559 DANEHICLYA 1568 >sp|Q66H63|GDAP2_RAT Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus OX=10116 GN=Gdap2 PE=2 SV=1 Length=497 Score = 86.4 bits (212), Expect = 9e-16, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 89/271 (33%), Gaps = 40/271 (15%) Query 160 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 219 D L SQ S + EV + + + F + Sbjct 2 DPLGAPSQFVDVDTLVSWGDSYED-----EVNSS-DSTAEAFQEDSNRSPFLYNRDINGK 55 Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 V + D+ + T +VN +N L V+ ++ ++ + + Sbjct 56 VVLWKGDV----ALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKED----LQKLKGC 107 Query 280 KVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAP 329 + G + + G NL A+ +H VGP + L S Y N Q + Sbjct 108 RTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFC 167 Query 330 LLSAGIFGADPIHSLRVCVDTVR----------TNVYLAV--FDKNLYDKLVSSFLEMKS 377 ++++ G + + + TVR V A+ ++ Y KL+ + Sbjct 168 VINSAKRGYPLEDATHIALRTVRRFLEIHGETIEKVVFAISELEEATYQKLLPLYF---- 223 Query 378 EKQVEQKIAEIPKEEVKPFITESKPSVEQRK 408 + ++++ +P E +P V +R+ Sbjct 224 PRSLKEESQSLPSLPADIGNAEGEPVVPERQ 254 >sp|Q9YBE9|Y1648_AERPE Uncharacterized protein APE_1648.1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) OX=272557 GN=APE_1648.1 PE=4 SV=2 Length=189 Score = 80.2 bits (196), Expect = 1e-15, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 23/175 (13%) Query 220 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 279 + + D+ + V+ VVN AN + GGG AGAL +A + ++ E+ P+ Sbjct 11 LAVSMGDLTK----VRAEAVVNPANSLMIMGGGAAGALKRAGGSVIEEEAM----RKAPV 62 Query 280 KVGGSCVLSGHNL-AKHCLHV-----VGPNVNKGEDIQLLKSAYENFNQHEV--LLAPLL 331 VG + + SG +L A+ +H G + + +A ++ + + P + Sbjct 63 PVGEAVITSGGSLPARFVIHAPTMEEPGMRIPLVNAFKASYAALRLASEAGIESVAMPAM 122 Query 332 SAGIFGADPIHSLR---VCVDTVRTN----VYLAVFDKNLYDKLVSSFLEMKSEK 379 AG+ G R + +R + L + Y + E + Sbjct 123 GAGVGGLSVAEVAREAAMAASILRGKWPRYIILVARGEEAYRGMEKGVREALGVE 177 >sp|P13887|POLN_RRVN Polyprotein P1234 OS=Ross river virus (strain NB5092) OX=11031 PE=3 SV=2 Length=2480 Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 92/250 (37%), Gaps = 41/250 (16%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + ++ DI A+ VVNAAN G GV A+ + ++ Sbjct 1331 CAPSYRVRRTDISGHAE----EAVVNAANAKGTVGVGVCRAVARKWPDSF---------K 1377 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 326 VG + ++ + + + +H VGPN + + + L +AY N + + + Sbjct 1378 GAATPVGTAKLVQANGM--NVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSV 1435 Query 327 LAPLLSAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS G+F ++ L +DT +V + DK K+ + + + Sbjct 1436 AIPLLSTGVFSGGKDRVMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVEL 1495 Query 381 VEQKIA-EIPKEEVKPF----------ITESKPSVEQRKQDDKKIKACVEEVTTTLEETK 429 V + I+ E V P IT+ K + + E++T + + Sbjct 1496 VSEDISLESDLIRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQ 1555 Query 430 FLTENLLLYI 439 E + LY Sbjct 1556 DANEQICLYA 1565 >sp|P13888|POLN_RRVT Polyprotein nsP1234 (Fragment) OS=Ross river virus (strain T48) OX=11032 PE=1 SV=2 Length=1149 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 92/249 (37%), Gaps = 41/249 (16%) Query 217 TDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN 276 + ++ DI A+ VVNAAN G GV A+ + ++ Sbjct 1 APSYRVRRTDISGHAE----EAVVNAANAKGTVGDGVCRAVARKWPDSF---------KG 47 Query 277 GPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLL 327 VG + ++ + + + +H VGPN + + + L +AY N + + + Sbjct 48 AATPVGTAKLVQANGM--NVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVA 105 Query 328 APLLSAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQV 381 PLLS G+F ++ L +DT +V + DK K+ + + + V Sbjct 106 IPLLSTGVFSGGKDRVMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELV 165 Query 382 EQKIA-EIPKEEVKPF----------ITESKPSVEQRKQDDKKIKACVEEVTTTLEETKF 430 + I+ E V P IT+ K + + E++T + + Sbjct 166 SEDISLESDLIRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQD 225 Query 431 LTENLLLYI 439 E + LY Sbjct 226 ANEQICLYA 234 >sp|Q66HX8|GDAP2_DANRE Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio OX=7955 GN=gdap2 PE=2 SV=1 Length=504 Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 34/223 (15%) Query 208 NSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQV 267 + F+ + + + + N D+ + T +VN +N L ++ ++++ ++ Sbjct 55 SPFTFRQDINNKIVLFNGDV----ALLNCTAIVNTSNETLTDKNPISDSIHRHAGPELR- 109 Query 268 ESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH 323 D+ + G + G + + G +L A+ +H VGP + L S Y N Q Sbjct 110 --DELLKLKG-CRTGEAKMTEGFDLAARFIIHTVGPKYKAKYRTAAESSLYSCYRNVLQL 166 Query 324 E------VLLAPLLSAGIFGADPIHSLRVCVDTVR----------TNVYLAVFD--KNLY 365 + ++S + + + TVR + AV D + +Y Sbjct 167 AKEHAMVSVGFCVISTVKRAYPVEDATHIALRTVRRFLENHGENIETLVFAVSDVEEPVY 226 Query 366 DKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRK 408 KL+ + + +++ +P +E +P V +R+ Sbjct 227 RKLLPLYY----PRSKQEERISLPLLPADIGNSEGEPVVPERQ 265 >sp|Q4R678|GDAP2_MACFA Ganglioside-induced differentiation-associated protein 2 OS=Macaca fascicularis OX=9541 GN=GDAP2 PE=2 SV=1 Length=461 Score = 80.6 bits (197), Expect = 5e-14, Method: Composition-based stats. Identities = 43/255 (17%), Positives = 89/255 (35%), Gaps = 37/255 (15%) Query 229 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 288 +E T +VN +N L V+ ++ ++ + + + G + + Sbjct 25 DELNSSDTTAIVNTSNESLTDKNPVSESIFMLAGPDLKED----LQKLKGCRTGEAKLTK 80 Query 289 GHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAPLLSAGIFGA 338 G NL A+ +H VGP + L S Y N Q + ++++ G Sbjct 81 GFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGY 140 Query 339 DPIHSLRVCVDTVR----------TNVYLAVFD--KNLYDKLVSSFLEMKSEKQVEQKIA 386 + + + TVR V AV D + Y KL+ + + ++++ Sbjct 141 PLEDATHIALRTVRRFLEIHGETIEKVVFAVSDLEEATYQKLLPLYF----PRSLKEENR 196 Query 387 EIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL-----YIDI 441 +P E +P V +R+ + E+ EE + L +L + + Sbjct 197 SLPYLPADIGNAEGEPVVPERQIRISEKPGAPED--NQEEEDEGLGVDLSFIGSHAFARM 254 Query 442 NGNLHPDSATLVSDI 456 G++ ++ Sbjct 255 EGDIDKQRKLILQGQ 269 >sp|Q5Y389|POLN_GETV Polyprotein P1234 OS=Getah virus OX=59300 PE=1 SV=3 Length=2467 Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 78/230 (34%), Gaps = 38/230 (17%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + ++ ADI VVNAAN GV A+ K ++ Sbjct 1332 CAPSYRVRRADI----SGHSEEAVVNAANAKGTVSDGVCRAVAKKWPSSF---------K 1378 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENF------NQHEVL 326 VG + ++ + +H VGPN + + + L +AY N + + Sbjct 1379 GAATPVGTAKMIRADGM--TVIHAVGPNFSTVTEAEGDRELAAAYRAVASIISTNNIKSV 1436 Query 327 LAPLLSAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS G F ++ L +D +V + DKN K+ E + Sbjct 1437 AVPLLSTGTFSGGKDRVMQSLNHLFTALDATDADVVIYCRDKNWEKKI----QEAIDRRT 1492 Query 381 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKF 430 + ++E E + R A ++ + LE T+F Sbjct 1493 AIELVSEDVTLETDLVRVHPDSCLVGRNGYS----ATDGKLYSYLEGTRF 1538 >sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian hepatitis E virus (isolate Chicken/California/Meng) OX=516993 GN=ORF1 PE=3 SV=1 Length=1531 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 97/287 (34%), Gaps = 29/287 (10%) Query 141 PLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 200 P+ + + P + + + Q + ++Q + EV M L P Sbjct 555 PVNCAPPAVSAGPVPAPPGNPVIESVQGSGAGGPEVSESQ-PGLTPTREV---TNMPLPP 610 Query 201 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 260 EV L + ++++ A +VN AN + GGG+ G ++ Sbjct 611 QRGQEEVL-----AVLPSGARVIVGNLLDVA----ADWLVNPANRDHQPGGGLCGMFHRR 661 Query 261 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 320 + + L G G +H GP+ D L+ Y Sbjct 662 W-PHLWPVCGEVQD----LPTGPVIFQQG---PPKVIHAPGPDYRIKPDPDGLRRVYAVV 713 Query 321 NQ-HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVF---DKNLYDKLVSSFLEMK 376 +Q H + +PL+SAGI+ A S T R L V +++ D +++ Sbjct 714 HQAHGTVASPLISAGIYRAPARESFEAWAATARDGDLLVVQRSMAQHIRDFVLNEGRHRP 773 Query 377 SEKQVEQKIAEIPK----EEVKPFITESKPSVEQRKQDDKKIKACVE 419 E V++ +A++ E +P+ K + A V Sbjct 774 RELHVDRAMADMVNYGLATEPEPYNELVKGVEVAPMTVKYALIAGVP 820 >sp|Q9JGL0|POLN_SAGV Polyprotein P1234 OS=Sagiyama virus OX=59303 PE=3 SV=3 Length=2467 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 78/230 (34%), Gaps = 38/230 (17%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + ++ ADI VVNAAN GV A+ K ++ Sbjct 1332 CAPSYRVRRADI----SGHGEEAVVNAANAKGTVSDGVCRAVAKKWPSSF---------K 1378 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENF------NQHEVL 326 VG + ++ + +H VGPN + + + L +AY N + + Sbjct 1379 GAATPVGTAKMIRADGM--TVIHAVGPNFSTVTEAEGDRELAAAYRAVASIISTNNIKSV 1436 Query 327 LAPLLSAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS G F ++ L +D +V + DKN K+ E + Sbjct 1437 AVPLLSTGTFSGGKDRVMQSLNHLFTALDATDADVVIYCRDKNWEKKI----QEAIDRRT 1492 Query 381 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKF 430 + ++E E + R A ++ + LE T+F Sbjct 1493 AIELVSEDVTLETDLVRVHPDSCLVGRNGYS----ATDGKLYSYLEGTRF 1538 >sp|Q8QL53|POLN_SLDV Polyprotein P1234 OS=Sleeping disease virus OX=78540 PE=3 SV=1 Length=2593 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 37/173 (21%) Query 211 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 270 GY L N+ + V+VNAAN + G GV GAL A +A Sbjct 1422 PGYRVLNKNI-----------ITAEEEVLVNAANSNGRPGDGVCGALYGAFGDAF----- 1465 Query 271 DYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDI---QLLKSAYEN------FN 321 NG + G + ++ G L +H G + + ++ + L++AY N Sbjct 1466 ----PNGAIGAGNAVLVRG--LEATIIHAAGADFREVDEETGARQLRAAYRAAATLVTAN 1519 Query 322 QHEVLLAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKL 368 PLLS IF +L DT +V + N+ ++ Sbjct 1520 GITSAAIPLLSTHIFSNGRNRLEQSFGALVEAFDTTECDVTIYCLANNMAARI 1572 >sp|Q8JJX1|POLN_SPDV Polyprotein P1234 OS=Salmon pancreas disease virus OX=84589 PE=3 SV=1 Length=2601 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 58/150 (39%), Gaps = 26/150 (17%) Query 234 VKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA 293 + V+VNAAN + G GV GAL A +A NG + G + ++ G L Sbjct 1435 AEEEVLVNAANSNGRPGDGVCGALYGAFGDAF---------PNGAIGAGNAVLVRG--LE 1483 Query 294 KHCLHVVGPNVNKGEDI---QLLKSAYEN------FNQHEVLLAPLLSAGIFGADPIH-- 342 +H G + + ++ + L++AY N PLLS IF Sbjct 1484 ATIIHAAGADFREVDEETGARQLRAAYRAAATLVTANGITSAAIPLLSTHIFSNGRNRLE 1543 Query 343 ----SLRVCVDTVRTNVYLAVFDKNLYDKL 368 +L DT +V + N+ ++ Sbjct 1544 QSFSALVEAFDTTECDVTIYCLANNMAARI 1573 >sp|Q460N3|PAR15_HUMAN Protein mono-ADP-ribosyltransferase PARP15 OS=Homo sapiens OX=9606 GN=PARP15 PE=1 SV=2 Length=678 Score = 74.8 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 78/231 (34%), Gaps = 31/231 (13%) Query 219 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG-VAGALNKATNNAMQVESDDYIATNG 277 N+ + + D++ + V+VN+ + L+ GGG ++ A + +Q E DD Sbjct 90 NLKLISGDVL----YIWADVIVNSVPMNLQLGGGPLSRAFLQKAGPMLQKELDD-RRRET 144 Query 278 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDI--QLLKSAYE------NFNQHEVLLA 328 KVG + SG NL K LH V P N G + Q++ + + + Sbjct 145 EEKVGNIFMTSGCNLDCKAVLHAVAPYWNNGAETSWQIMANIIKKCLTTVEVLSFSSITF 204 Query 329 PLLSAGIFGADPIHSLRVCVDTVRT---------------NVYLAVFDKNLYDKLVSSFL 373 P++ G ++ + V + + D + F Sbjct 205 PMIGTGSLQFPKAVFAKLILSEVFEYSSSTRPITSPLQEVHFLVYTNDDEGCQAFLDEFT 264 Query 374 EMKSEKQVEQKIA-EIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTT 423 + +I + V +++ + + K + ++ T Sbjct 265 NWSRINPNKARIPMAGDTQGVVGTVSKPCFTAYEMKIGAITFQVATGDIAT 315 >sp|Q8CCK0|H2AW_MOUSE Core histone macro-H2A.2 OS=Mus musculus OX=10090 GN=Macroh2a2 PE=1 SV=3 Length=372 Score = 69.4 bits (168), Expect = 9e-11, Method: Composition-based stats. Identities = 35/187 (19%), Positives = 64/187 (34%), Gaps = 23/187 (12%) Query 211 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNA--ANVYLKHGGGVAGALNKATNNAMQVE 268 S L L + + +DI ++ +V+ A + LK G AL KA Sbjct 188 SKSLVLGQKLSLTQSDISHIGS-MRVEGIVHPTTAEIDLKEEIG--KALEKAGGKEFLET 244 Query 269 SDDYIATNGPLKVGGSCVL-SGHNLAKHCLHVVGPNVNKGEDIQLLKSAYEN------FN 321 + + GPL+V + V S AK +H P + + L+ +N Sbjct 245 VKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDK 304 Query 322 QHEVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVS 370 + + + P +G + +V + + NVY +FD V Sbjct 305 KLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSSSSLKNVYFLLFDSESIGIYVQ 364 Query 371 SFLEMKS 377 ++ + Sbjct 365 EMAKLDT 371 >sp|Q9P0M6|H2AW_HUMAN Core histone macro-H2A.2 OS=Homo sapiens OX=9606 GN=MACROH2A2 PE=1 SV=3 Length=372 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 35/186 (19%), Positives = 63/186 (34%), Gaps = 23/186 (12%) Query 211 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNA--ANVYLKHGGGVAGALNKATNNAMQVE 268 S L L + + +DI ++ +V+ A + LK G AL KA Sbjct 188 SKSLVLGQKLSLTQSDISHIGS-MRVEGIVHPTTAEIDLKEDIG--KALEKAGGKEFLET 244 Query 269 SDDYIATNGPLKVGGSCVL-SGHNLAKHCLHVVGPNVNKGEDIQLLKSAYEN------FN 321 + + GPL+V + V S AK +H P + + L+ +N Sbjct 245 VKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDK 304 Query 322 QHEVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVS 370 + + + P +G + +V + + NVY +FD V Sbjct 305 KLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIYVQ 364 Query 371 SFLEMK 376 ++ Sbjct 365 EMAKLD 370 >sp|Q7JUR6|GDAP2_DROME Protein GDAP2 homolog OS=Drosophila melanogaster OX=7227 GN=Gdap2 PE=2 SV=1 Length=540 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 32/233 (14%), Positives = 69/233 (30%), Gaps = 34/233 (15%) Query 203 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 262 + F + + I + D+ ++ + N ++ L ++ + Sbjct 52 PRHNRSPFPLCKDVNNRFVIWDGDMTT----LEVDAITNTSDETLTESNSISERIFAVAG 107 Query 263 NAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYE 318 N ++ E + + G + G+NL AK+ LH V P K L Y Sbjct 108 NQLREELSTTVK---ECRTGDVRITRGYNLPAKYVLHTVAPAYREKFKTAAENTLHCCYR 164 Query 319 NF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT-------NVYLAVFDKNL- 364 N + +SA + + + T+R V + + Sbjct 165 NVLCKAKELNLHTIALCNISAHQKSFPADVAAHIALRTIRRYLDKCTLQVVILCVGSSER 224 Query 365 --YDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIK 415 Y+ L + ++ + K + Q D++I+ Sbjct 225 GTYEVLAPLYFPRDQLEE-----RSALWQLPKD--IGGEFGEPQHPDPDRQIR 270 >sp|Q9YLR1|POLN_HEVUS Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 3 (isolate Human/United States/US2) OX=509615 GN=ORF1 PE=3 SV=1 Length=1708 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 40/211 (19%), Positives = 67/211 (32%), Gaps = 28/211 (13%) Query 139 GKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMEL 198 G P S EE +D S +V + G T V Sbjct 729 GLPYPTPPVSDIWVLPPPSEESHVDAASVPSVPEPAGL---------TSPIVLTPPPPPP 779 Query 199 TPVVQTIEVNSFSGYL--KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGA 256 + L D + + E +VNA+N + GGG+ A Sbjct 780 PVRKPATSPPPRTRRLLYTYPDGAKVYAGSLXES----DCDWLVNASNPGHRPGGGLCHA 835 Query 257 LNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKS 315 + A S ++I G L+ + L + +H V P+ ++ + L++ Sbjct 836 FYQRFPEAF--YSTEFIMREG---------LAAYTLTPRPIIHAVAPDYRVEQNPKRLEA 884 Query 316 AYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 345 AY ++ PLL +GI+ S Sbjct 885 AYRETCSRRGTAAYPLLGSGIYQVPVSLSFD 915 >sp|Q292F9|GDAP2_DROPS Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA15091 PE=3 SV=1 Length=542 Score = 67.9 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 69/233 (30%), Gaps = 34/233 (15%) Query 203 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 262 + F + + + I + D+ + + N ++ L ++ + Sbjct 54 PRHNRSPFPLSKDVNNRLVIWDGDMTT----LDVDAITNTSDETLTESNIISERILAVAG 109 Query 263 NAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYE 318 N ++ E + + G + G+NL AK+ LH V P K L Y Sbjct 110 NQLREELSTNVK---ECRTGDVRITRGYNLPAKYVLHTVAPTYREKFKTAAENTLHCCYR 166 Query 319 NF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT-------NVYLAV---FDK 362 N + +S + + + T+R V + ++ Sbjct 167 NVLCKAKELNLHTIALCNISVHQKSFPADVAAHIALRTIRRYLDKCTLQVVILCVNSNER 226 Query 363 NLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIK 415 Y+ L + ++ + K + Q D++I+ Sbjct 227 GTYEVLAPLYFPRDQLEE-----RSALWQLPKD--IGGEFGEPQHPDPDRQIR 272 >sp|A0A0D2UG83|H2AY_CAPO3 Histone macroH2A1.1 OS=Capsaspora owczarzaki (strain ATCC 30864) OX=595528 GN=CAOG_004778 PE=1 SV=1 Length=368 Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 38/184 (21%), Positives = 67/184 (36%), Gaps = 23/184 (13%) Query 211 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 270 L L +Y+ N D+ E V+ VV+ N + G V GA+ A + E + Sbjct 188 KKTLHLGQTLYVVNGDLTE----VRCDAVVHPTNGTMSFAGQVGGAIRAAAGAGVDAEVN 243 Query 271 DYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNV-NKGEDIQLLKSAYENF------NQ 322 Y++ + L+V + + SGHNL K +HV PN N L N Sbjct 244 SYMSEHSQLQVTKAAITSGHNLPSKWIVHVHSPNYSNAATATDALTQTIRNALTLADTKS 303 Query 323 HEVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSS 371 + + P + +G + + + + VY +FD+ + + Sbjct 304 IKTIAFPSIGSGNNHFPKHIAAQTILQAISAYFMSIMSSSIKEVYFVLFDQESINVYNAE 363 Query 372 FLEM 375 + Sbjct 364 LINT 367 >sp|Q81862|POLN_HEVCH Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/China/HeBei/1987) OX=652674 GN=ORF1 PE=1 SV=1 Length=1693 Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (38%), Gaps = 11/108 (10%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNA+NV + GGG+ A + + S G + + +H Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRD-------GAAAYT---LTPRPIIH 852 Query 299 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 345 V P+ + ++L++AY ++ PLL GI+ S Sbjct 853 AVAPDYRLEHNPKMLEAAYRETCSRLGTAAYPLLGTGIYQVPIGPSFD 900 >sp|P33424|POLN_HEVPA Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/Pakistan/Sar-55) OX=33774 GN=ORF1 PE=1 SV=2 Length=1693 Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNA+NV + GGG+ A + + S G + + +H Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRD-------GAAAYT---LTPRPIIH 852 Query 299 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 345 V P+ + + L++AY ++ PLL GI+ S Sbjct 853 AVAPDYRLEHNPKRLEAAYRETCSRLGTAAYPLLGTGIYQVPIGPSFD 900 >sp|P29324|POLN_HEVBU Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/Burma) OX=31767 GN=ORF1 PE=1 SV=1 Length=1693 Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNA+NV + GGG+ A + + S G + + +H Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRD-------GAAAYT---LTPRPIIH 852 Query 299 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 345 V P+ + + L++AY ++ PLL GI+ S Sbjct 853 AVAPDYRLEHNPKRLEAAYRETCSRLGTAAYPLLGTGIYQVPIGPSFD 900 >sp|Q9WC28|POLN_HEVHY Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/India/Hyderabad) OX=512346 GN=ORF1 PE=1 SV=1 Length=1693 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 11/108 (10%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNA+NV GGG+ A + + G + + +H Sbjct 803 LVNASNVDHCPGGGLCHAFYQRYPASFDAACFVMRD-------GAAAYT---LTPRPIIH 852 Query 299 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 345 V P+ + + L++AY ++ PLL GI+ S Sbjct 853 RVAPDYRLEHNPKRLEAAYRETCSRLGTAAYPLLGTGIYQVPIGPSFD 900 >sp|Q6J8G2|POLN_HEVMG Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 3 (isolate Swine/United States/swUS1) OX=512345 GN=ORF1 PE=3 SV=1 Length=1708 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/109 (23%), Positives = 46/109 (42%), Gaps = 13/109 (12%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 297 +VNA+N + GGG+ A + A ++I G L+ + L + + Sbjct 818 LVNASNPGHRPGGGLCHAFYQRFPEAF--YPTEFIMREG---------LAAYTLTPRPII 866 Query 298 HVVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 345 H V P+ ++ + L++AY ++ PLL +GI+ S Sbjct 867 HAVAPDYRVEQNPKRLEAAYRETCSRRGTAAYPLLGSGIYQVPVSLSFD 915 >sp|Q04610|POLN_HEVMY Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/Myanmar/HEVNE8L) OX=31769 GN=ORF1 PE=1 SV=1 Length=1693 Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 11/108 (10%) Query 239 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 298 +VNA+NV + GGG+ A + + S G + + +H Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRD-------GAAAYT---LTPRPIIH 852 Query 299 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 345 V P+ + + L++AY ++ LL GI+ S Sbjct 853 AVAPDYRLEHNPKRLEAAYRETCSRLGTAAYSLLGTGIYQVPIGPSFD 900 >sp|Q9IVZ9|POLN_HEVCT Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 4 (isolate Human/China/T1) OX=509627 GN=ORF1 PE=3 SV=1 Length=1707 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (42%), Gaps = 13/113 (12%) Query 235 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-A 293 + T +VNA+N + GGG+ A + + ++I ++G + + L Sbjct 813 ECTWLVNASNPGHRPGGGLCHAFYQRFPESFDPA--EFIMSDG---------FAAYTLTP 861 Query 294 KHCLHVVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 345 + +H V P+ + + L++AY ++ PLL GI+ S Sbjct 862 RPIIHAVAPDYRVEHNPKRLEAAYRETCSRRGTAAYPLLGVGIYRVPVGLSFD 914 >sp|Q03495|POLN_HEVME Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 2 (isolate Human/Mexico) OX=31768 GN=ORF1 PE=3 SV=1 Length=1691 Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 36/183 (20%), Positives = 65/183 (36%), Gaps = 19/183 (10%) Query 235 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-A 293 + T +VNA+N + GGG+ A + ++ ++ +G L+ + L Sbjct 797 ECTWLVNASNAGHRPGGGLCHAFFQRYPDSFDA--TKFVMRDG---------LAAYTLTP 845 Query 294 KHCLHVVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVR 352 + +H V P+ + + L++AY + PLL AGI+ S R Sbjct 846 RPIIHAVAPDYRLEHNPKRLEAAYRETCARRGTAAYPLLGAGIYQVPVSLSFDAWERNHR 905 Query 353 TNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDK 412 FD+ +L + + E Q I E + S R Sbjct 906 P------FDELYLTELAARWFESNRPGQPTLNITEDTARAANLALELDSGSEVGRACAGC 959 Query 413 KIK 415 K++ Sbjct 960 KVE 962 >sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1 Length=912 Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 31/121 (26%), Positives = 48/121 (40%), Gaps = 24/121 (20%) Query 223 KNADIVEEAKK--VKPTVVVNAANVYLK-HGGGVAGALNKATNNAMQVESDDYIATNGPL 279 DI + + + V+ NA N LK GGGV A+ KA + E+ + N L Sbjct 527 FVGDITKLRSEGGLHCNVIANATNWRLKPGGGGVNAAIFKAAGPDL--ETATRVRAN-TL 583 Query 280 KVGGSCVLSGHNLA--------KHCLHVVGPNVNKGEDIQL----------LKSAYENFN 321 G + V+ + H +HV+GPN+N L L+ AY + Sbjct 584 LPGKAVVVPLPSTCPLHNAEGITHVIHVLGPNMNPNRPDNLNNDYTKGCKTLREAYTSLF 643 Query 322 Q 322 + Sbjct 644 E 644 >sp|P08411|POLN_SFV Polyprotein P1234 OS=Semliki forest virus OX=11033 PE=1 SV=2 Length=2432 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 76/231 (33%), Gaps = 40/231 (17%) Query 216 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 275 + +K ADI VVNAAN G GV A+ K +A Sbjct 1336 CAPSYRVKRADI----ATCTEAAVVNAANARGTVGDGVCRAVAKKWPSAF---------K 1382 Query 276 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 326 VG + + +H V PN + + + L + Y N + Sbjct 1383 GAATPVGTIKTVMCGSYP--VIHAVAPNFSATTEAEGDRELAAVYRAVAAEVNRLSLSSV 1440 Query 327 LAPLLSAGIFGA------DPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 380 PLLS G+F ++ L +D +V + DK+ K+ ++ Sbjct 1441 AIPLLSTGVFSGGRDRLQQSLNHLFTAMDATDADVTIYCRDKSWEKKI---------QEA 1491 Query 381 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVE-EVTTTLEETKF 430 ++ + A + T+ +K + + + + E TKF Sbjct 1492 IDMRTAVELLNDDVELTTDLVRVHPDSSLVGRKGYSTTDGSLYSYFEGTKF 1542 >sp|Q54PT1|GDAP2_DICDI Protein GDAP2 homolog OS=Dictyostelium discoideum OX=44689 GN=gdap2 PE=3 SV=1 Length=568 Score = 53.3 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 40/241 (17%), Positives = 80/241 (33%), Gaps = 42/241 (17%) Query 209 SFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVE 268 F ++ + + DI + +V + + L ++ + K + M + Sbjct 48 QFKIDTEINSRICLWMGDICN----LNTDTIVYSNSKTLTESDTISDKIFKYGGSEMMND 103 Query 269 SDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNK---GEDIQLLKSAYENFN--- 321 I NG + G S + SG NL + +H V P N L S Y + Sbjct 104 ----IQKNGECRYGESIITSGGNLPSRFVVHTVCPTYNPKYLSAAENALNSCYRSAFHLS 159 Query 322 ---QHEVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVF---DKNL 364 + + + L + + + + T+R V LA+ D L Sbjct 160 MDVKSKSISFSTLHSEKRQFPSVGGCHIALRTIRRFLEKPFSKSFEKVILAINTFEDLRL 219 Query 365 YDKLVSSFL----------EMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKI 414 Y++++ + ++ K V + E E K I E+ ++ + +D Sbjct 220 YEQMLPIYFPRNQQELKFSQISLPKDVGDENGEAIVESRKIRIIETPSTIIREPEDYNCF 279 Query 415 K 415 Sbjct 280 Y 280 >sp|P26627|R1AB_CVMJD Replicase polyprotein 1ab (Fragment) OS=Murine coronavirus (strain defective JHM) OX=11143 GN=rep PE=3 SV=1 Length=500 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 74/195 (38%), Gaps = 21/195 (11%) Query 785 DVTKIKPHNSHEGKTFYVLPNDDT-LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQV 843 D+ K++ E +T P D T V AF+ + L + + + +K Sbjct 323 DIEKVEDSILSELQTELNAPADKTYEDVLAFDAIY---SETLSAFYAVPSDETHFKVC-- 377 Query 844 NGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKT 903 G S NC+L + L+ +Q + L+F +Q + +AG F ++ K+ Sbjct 378 -GFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKS 436 Query 904 VGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQF 961 + G V + + S K N C CG + L+G++AV + G Sbjct 437 IILPQGGYVADFAYFFLSQ---CSFKVHANWRCLKCGM-ELKLQGLDAVFFYG------- 485 Query 962 KKGVQIPCTCGKQAT 976 V C C +A Sbjct 486 -DVVSHMCKCSFKAY 499 >sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=rep PE=1 SV=1 Length=6872 Score = 52.1 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 61/157 (39%), Gaps = 36/157 (23%) Query 228 VEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQV-----------ESDDYIATN 276 + + +VNAAN L +G GV GA+ A + +++ SD + Sbjct 1657 IGAITTTEGEFIVNAANKQLNNGTGVTGAIFAAHDKELKLTQAIKALPTYGASDKLESHQ 1716 Query 277 GPLKVGGSCVLSGHNL--AKHCLHVVGPNV----NKGEDIQL---------LKSAYENF- 320 ++ ++ +N A + LH P +K ++ L LK Y+ Sbjct 1717 HVVQT----IIKNNNSTHAINILHAAAPIKVKCTSKNPEVLLAHNETAQSELKETYKAIV 1772 Query 321 -----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVR 352 N+ + PL AG +G P+ SL +D +R Sbjct 1773 DYAQLNKLTHIYLPLFGAGAYGHKPLDSLEAFLDAMR 1809 Score = 41.7 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 49/338 (14%), Positives = 90/338 (27%), Gaps = 59/338 (17%) Query 1318 DTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTN--SRIKAS 1375 Y + +V Y+ F T T+ T + IKA Sbjct 2554 SVFLAYIALLYSFSGHGIFTVVAYFTMLFARYYITSFINFCTSQLTATQVTQWFAAIKAK 2613 Query 1376 MPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALG-- 1433 + + + + Y+ +S ++ + ++ ++ Y+ Sbjct 2614 YTGIYESSQDRVLTVNVTGTNVPYIV--KYSTILTVTMYVAFMAFVWTVSTYAAQYTAGE 2671 Query 1434 ---------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT--GSIPCSV-CLSGLDSLD 1481 V L + Y ++ + C SI C + Sbjct 2672 RYDRPPYQTVFQKTLNVLGLTETVTYYYPYAS---LNEACAASTSILCRLGSPFNFHYPS 2728 Query 1482 TYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI 1541 Y + T+Q SS W LF F L ++ Sbjct 2729 DYTQVRTVQTDTSSPFW----------------LFIIFMPPSFLFIVLPWLILCTITP-- 2770 Query 1542 SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRAT 1601 +++ Q+ S ++ I F Y K H C TC+ +R+ Sbjct 2771 --------TVSIAQLLVPSIILNATIVF--IYIRRKFTGHC---CGPHTCIKHADISRSL 2817 Query 1602 RVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 1639 + T+ + C HNW C N D+ Sbjct 2818 QFRPTSQIQHSLTFC-------GTLCAKHNWYCNNSDS 2848 >sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=1a PE=1 SV=1 Length=4555 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 61/157 (39%), Gaps = 36/157 (23%) Query 228 VEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQV-----------ESDDYIATN 276 + + +VNAAN L +G GV GA+ A + +++ SD + Sbjct 1657 IGAITTTEGEFIVNAANKQLNNGTGVTGAIFAAHDKELKLTQAIKALPTYGASDKLESHQ 1716 Query 277 GPLKVGGSCVLSGHNL--AKHCLHVVGPNV----NKGEDIQL---------LKSAYENF- 320 ++ ++ +N A + LH P +K ++ L LK Y+ Sbjct 1717 HVVQT----IIKNNNSTHAINILHAAAPIKVKCTSKNPEVLLAHNETAQSELKETYKAIV 1772 Query 321 -----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVR 352 N+ + PL AG +G P+ SL +D +R Sbjct 1773 DYAQLNKLTHIYLPLFGAGAYGHKPLDSLEAFLDAMR 1809 Score = 41.7 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 49/338 (14%), Positives = 90/338 (27%), Gaps = 59/338 (17%) Query 1318 DTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTN--SRIKAS 1375 Y + +V Y+ F T T+ T + IKA Sbjct 2554 SVFLAYIALLYSFSGHGIFTVVAYFTMLFARYYITSFINFCTSQLTATQVTQWFAAIKAK 2613 Query 1376 MPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALG-- 1433 + + + + Y+ +S ++ + ++ ++ Y+ Sbjct 2614 YTGIYESSQDRVLTVNVTGTNVPYIV--KYSTILTVTMYVAFMAFVWTVSTYAAQYTAGE 2671 Query 1434 ---------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT--GSIPCSV-CLSGLDSLD 1481 V L + Y ++ + C SI C + Sbjct 2672 RYDRPPYQTVFQKTLNVLGLTETVTYYYPYAS---LNEACAASTSILCRLGSPFNFHYPS 2728 Query 1482 TYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI 1541 Y + T+Q SS W LF F L ++ Sbjct 2729 DYTQVRTVQTDTSSPFW----------------LFIIFMPPSFLFIVLPWLILCTITP-- 2770 Query 1542 SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRAT 1601 +++ Q+ S ++ I F Y K H C TC+ +R+ Sbjct 2771 --------TVSIAQLLVPSIILNATIVF--IYIRRKFTGHC---CGPHTCIKHADISRSL 2817 Query 1602 RVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 1639 + T+ + C HNW C N D+ Sbjct 2818 QFRPTSQIQHSLTFC-------GTLCAKHNWYCNNSDS 2848 >sp|Q5A1V3|POA1_CANAL ADP-ribose 1''-phosphate phosphatase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=POA1 PE=3 SV=2 Length=156 Score = 40.9 bits (94), Expect = 0.032, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 30/162 (19%) Query 220 VYIKNADIVEEAKKVKPTVVV-NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 278 + D+ A V++ +A N + GGG+A A+ + E Y N Sbjct 2 IQYIKGDLFTHAIPAGKKVILAHACNTHGSWGGGIA-AVFRKKFPKSNNEYSQYCHKNSN 60 Query 279 LKVGGSCVLSGHNL---------------AKHCLHVVGPNVNKGEDIQLLKSA--YENFN 321 L +G S ++ + +H K L + Y+ Sbjct 61 L-LGTSFIIESDQPNILIACLFTSDFNQTPEQIVH-----FTKQSIADLARKVSDYKEVE 114 Query 322 QHE---VLLAPLLSAGIFGADPI--HSLRVCVDTVRTNVYLA 358 + + + P ++AGIFG S D + NVY+ Sbjct 115 KCDGKVAINMPKINAGIFGVPWEDTESALQEFDNLHFNVYVI 156 >sp|Q9Z1Q1|NEST_MESAU Nestin (Fragments) OS=Mesocricetus auratus OX=10036 GN=NES PE=1 SV=2 Length=1818 Score = 41.7 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 69/184 (38%), Gaps = 17/184 (9%) Query 26 ELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMA 85 E D ++K E E F ++ ++L E L++ Sbjct 520 ETDRPLEKENGEPLKPVEEEDQL----FETLIEKEGQESLSSPEEEDQETDRPLEKEEDQ 575 Query 86 TY-YLFDESGEFKLASHMYCSFYPPDEDEEEGD--CEEEEFEPSTQYEYGTEDDYQGKPL 142 L ++ G+ L+S P+E+++E D E+E EP E + Sbjct 576 LVERLVEKEGQESLSS--------PEEEDQETDRPLEKENGEPLKPVEEEDQLFETLIEK 627 Query 143 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTI--QTIVEVQPQLEMELTP 200 E + ++ + E+++ + L+ + Q V + E ++ + + E LE E Sbjct 628 EGQESLSSPEEEDQETDRPLEKEEDQLVERLVEKEGQESLSSPEEEDQETDRPLEKEEDQ 687 Query 201 VVQT 204 +V+T Sbjct 688 LVET 691 Score = 39.0 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 23/131 (18%), Positives = 52/131 (40%), Gaps = 13/131 (10%) Query 89 LFDESGEFKLASHMYCSFYPPDEDEEEGD--CEEEEFEPSTQYEYGTEDDYQGKPLEFGA 146 L ++ G+ L+S P+E+++E D E+E EP E + E Sbjct 502 LIEKEGQESLSS--------PEEEDQETDRPLEKENGEPLKPVEEEDQLFETLIEKEGQE 553 Query 147 TSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMEL---TPVVQ 203 + ++ + E+++ + L+ + Q V + E ++ + + + +E P+ Sbjct 554 SLSSPEEEDQETDRPLEKEEDQLVERLVEKEGQESLSSPEEEDQETDRPLEKENGEPLKP 613 Query 204 TIEVNSFSGYL 214 E + L Sbjct 614 VEEEDQLFETL 624 >sp|Q8IRB5|CLSPN_DROME Claspin OS=Drosophila melanogaster OX=7227 GN=Claspin PE=1 SV=1 Length=1465 Score = 40.9 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (42%), Gaps = 6/89 (7%) Query 111 EDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL------EFGATSAALQPEEEQEEDWLDD 164 EDEEEG +EE+EP + Y + + + A + + + +ED D+ Sbjct 861 EDEEEGMDVDEEYEPEDKPGYAEVTINEDEEIIDKVDSTAEDDGDAEENKNDADEDPEDN 920 Query 165 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQ 193 + + +++ SE Q E Q + Sbjct 921 PVEDSEDEKNDSESEQECEANPEPETQTR 949 >sp|F1QGD2|ZDH24_DANRE Probable palmitoyltransferase ZDHHC24 OS=Danio rerio OX=7955 GN=zdhhc24 PE=2 SV=1 Length=295 Score = 40.2 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 25/183 (14%), Positives = 57/183 (31%), Gaps = 9/183 (5%) Query 1402 SPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIA 1461 S ++ L +F+L ++ + ++ + LG + G+R Y + Sbjct 55 STIWTGLHLFAQYFMLGNITWNASLFVKTNPSIRGVFLGGDTLGQGWRYCY--NCETHTP 112 Query 1462 TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFY 1521 C+ C+VC+ D + + F + A +L+ Sbjct 113 PRCSHCYDCNVCVLRRDH-----HCVFFGQCVG--FHNYRYFLTCLLFMWAGLLYAVVMN 165 Query 1522 VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 1581 I++ ++ +V + W+M + + A A + + H Sbjct 166 AEVFIFILKEGVTFHSVMLLLVPWIMLVSGQVTTRAFAFAFIADTCVVGFLLVAAFLFFH 225 Query 1582 VVD 1584 V Sbjct 226 VAL 228 >sp|Q67ES1|TR113_RAT Taste receptor type 2 member 113 OS=Rattus norvegicus OX=10116 GN=Tas2r113 PE=3 SV=1 Length=309 Score = 39.8 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 25/215 (12%), Positives = 69/215 (32%), Gaps = 31/215 (14%) Query 1393 LEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGY 1452 L ++++ S + I+ + + L L++ + VL P+ + Sbjct 29 LMTCIDWVRRRKISLVDQILTALAITRITLILLVFIDWWVSVLF-----PALHETGKILR 83 Query 1453 LNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLA 1512 + + T+ +C + S+ + + ++ S+ + + + Sbjct 84 MYFISWTVINHCNLWLTASLSIIYFLKIASFSSIIFL------------YLKFRVKNVVF 131 Query 1513 YILFTRFFYVLGLAAIMQLFFSYFAVHFISNSW-------------LMWLIINLVQMAPI 1559 L F++ AI+ ++F N + + P Sbjct 132 VTLLVSLFFLFINTAIVNVYFDVCFDGVQRNVSQVSRLYNHEQICKFLSFTNPMFAFIPF 191 Query 1560 -SAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMM 1593 ++M ++ S + K+ H +GC + ++ Sbjct 192 VTSMATFFLLIFSLWRHLKNMKHNAEGCRDVSTIV 226 >sp|P46565|SRG8_CAEEL Serpentine receptor class gamma-8 OS=Caenorhabditis elegans OX=6239 GN=srg-8 PE=3 SV=1 Length=316 Score = 39.4 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 28/206 (14%), Positives = 64/206 (31%), Gaps = 11/206 (5%) Query 1392 CLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREG 1451 L + Y+ K +F++ S+ L+ + L + +P C + Sbjct 39 FLYSRILYVVWVQHKKSYGYHPFFMVYSMVGLILVLLDIFITRL--FVYVPQLCLPAAQF 96 Query 1452 YLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFL 1511 ++++ + Y + L T + W + ++ + Sbjct 97 FISNPFLMELYYPLLNYLHCAQPFIQIFLTTNRMSSVLWPVDHEKFWKINFSRILILNLI 156 Query 1512 AYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFAS 1571 A FF++ ++ YF +I+ ++ + + I + V M + Sbjct 157 A-----PFFFIWNTIISKKVLIFYFGGFYINYLKIIPWASMSLFLFIIRSAVVMITVVTT 211 Query 1572 FYYVWKSYVHVVDGCNSST---CMMC 1594 WK H+ + S C C Sbjct 212 SITFWKM-SHMKNRLKKSEGTLCKAC 236 >sp|Q03F26|TIG_PEDPA Trigger factor OS=Pediococcus pentosaceus (strain ATCC 25745 / CCUG 21536 / LMG 10740 / 183-1w) OX=278197 GN=tig PE=3 SV=1 Length=435 Score = 39.8 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 25/196 (13%), Positives = 61/196 (31%), Gaps = 15/196 (8%) Query 4 KVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIK 63 KV + E+ ++DE +D + + K ++ + ++ Sbjct 236 KVKIHEIKTKELPELDD-EFAKDVDEDVDSLEDLKVKTKEEIKSRKIQAASDAKETEAVQ 294 Query 64 TLQPVSELLTPLGIDLDEWSMATY--YLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEE 121 +E+ L+E YL + + ++ MY ED+ Sbjct 295 AAVDNAEIAEIPEAMLNEDVDRQVNQYLANMQ-QQGISPEMYFQLTGSSEDQLRDQLR-- 351 Query 122 EFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQ-TVGQQDGSEDNQ 180 E LE + + P +++ + D ++Q + ++ Sbjct 352 --------EGAENRVKTTLVLEAIVEAEKIDPSDDEVAAEIKDLAEQYGMEEKAVRSALS 403 Query 181 TTTIQTIVEVQPQLEM 196 I+ V ++ +E+ Sbjct 404 EDMIKHDVAIKSAVEL 419 >sp|Q864G6|MSHR_ALOSE Melanocyte-stimulating hormone receptor OS=Alouatta seniculus OX=9503 GN=MC1R PE=3 SV=1 Length=317 Score = 39.4 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 50/281 (18%), Positives = 92/281 (33%), Gaps = 23/281 (8%) Query 1367 STNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLI 1426 + ++ S+P + + + K+ N + I L LS L S Sbjct 31 TGAPCLEVSIPDWLFLSLGLVSLVQNVLVVAAIAKNRNLHSPMYCFICCLALSDLLVSGS 90 Query 1427 YSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSL 1486 +LM G + + N+ +V C+ S+ CS+C G +LD Y S+ Sbjct 91 NMLETAVILMLEAGALATRASVVQQLQNTIDVLT---CS-SMLCSLCFLGAIALDRYVSI 146 Query 1487 ETIQITISSFKWDLTAFGLVAEW---------FLAY------ILFTRFFYVLGLAAIMQL 1531 S + A W F+AY +L F++ L + L Sbjct 147 FYALRYHSIVTLPRARRAIAATWVASVLSSTLFIAYCDHAAVLLCLVVFFLAMLVLMAVL 206 Query 1532 FFSYFA---VHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWK-SYVHVVDGCN 1587 + A H + L + Q + + I F+ W ++H++ Sbjct 207 YVHMLARACQHAQGITRLHKRQLPAHQGFGLRGAATLTILLGIFFLCWGPFFLHLMLVVL 266 Query 1588 SSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCK 1628 + C + +V T I+ +YA + C+ Sbjct 267 CPQHLTCSCIFKNFKVFLTLIICNTIIDPLIYAFRSQELCR 307 >sp|P29402|CALX1_ARATH Calnexin homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CNX1 PE=1 SV=1 Length=530 Score = 39.8 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 16/118 (14%) Query 96 FKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEE 155 + + PD ++++ + +E + ED + P+E E Sbjct 211 EDFEPALIPAKTIPDPEDKKPEDWDERAKIPDPNAVKPEDWDEDAPMEIED------EEA 264 Query 156 EQEEDWLDDDSQQTVGQQ---DGSEDNQTT-------TIQTIVEVQPQLEMELTPVVQ 203 E+ E WLDD+ ++ + D++ E P P+ + Sbjct 265 EKPEGWLDDEPEEVDDPEATKPEDWDDEEDGMWEAPKIDNPKCEAAPGCGEWKRPMKR 322 >sp|Q03QN6|TIG_LEVBA Trigger factor OS=Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947) OX=387344 GN=tig PE=3 SV=1 Length=436 Score = 39.4 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 62/210 (30%), Gaps = 15/210 (7%) Query 1 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA 60 A KVT + ++ ++DE +D + + +V + D Sbjct 233 ATFKVTIHEVKEKQLPELDD-EFAKDVDEDVDSLEELEAKTKDRLKEQKVTAAHDAIEDE 291 Query 61 VIKTLQPVSELLTPLGIDLDEWSMATY--YLFDESGEFKLASHMYCSFYPPDEDEEEGDC 118 I +E+ L + YL + + + MY ED+ Sbjct 292 AISEAVDNAEIAAVPEAMLKDDIDRQMDQYLANMQ-QQGIEPKMYFQLTGTTEDDLRKQF 350 Query 119 EEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDD-DSQQTVGQQDGSE 177 + + LE + ++P E++ + D SQ + + Sbjct 351 AD----------GAEKRIKTNLVLEAVVEAEKIEPSEDEVAAEVKDLASQYGMEESAVRS 400 Query 178 DNQTTTIQTIVEVQPQLEMELTPVVQTIEV 207 ++ + ++ +++ Q + Sbjct 401 ALSDDMLKHDIAIKSAVDLIADSAKQDKKK 430 >sp|Q12019|MDN1_YEAST Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MDN1 PE=1 SV=1 Length=4910 Score = 39.4 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (47%), Gaps = 1/88 (1%) Query 108 PPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQ 167 P D ++EE E+EE + + E E+D G + G T AL EE EED +D + Sbjct 4279 PDDLNKEEVGNEDEEVKQESGIESDNENDEPGPEEDAGETETALDEEEGAEED-VDMTND 4337 Query 168 QTVGQQDGSEDNQTTTIQTIVEVQPQLE 195 + ++ + Q + + ++ +E Sbjct 4338 EGKEDEENGPEEQAMSDEEELKQDAAME 4365 >sp|Q9V4C8|HCF_DROME Host cell factor OS=Drosophila melanogaster OX=7227 GN=Hcf PE=1 SV=2 Length=1500 Score = 39.4 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 56/314 (18%), Positives = 106/314 (34%), Gaps = 61/314 (19%) Query 1085 DNSYFTEQPIDLVPN--------------QPYPNASFDNFKFV------CDNIKFADDLN 1124 YF ++P+ L PN Q P +F K N A + Sbjct 687 GKQYFIQKPLTLAPNVQLQFVKTSGGMTVQTLPKVNFTASKGTPPHGISIANPHLASGIT 746 Query 1125 QLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKAT 1184 Q+ G P S+ K P ++G+V+ K +P G KL+ K +N Sbjct 747 QIQGSTVPGSQIQK----PIVSGNVL----KLVSPHTMAGGKLIMK-----NSNILQMGK 793 Query 1185 YKPNTWCIRCLW----------------------STKPVETSNSFDVLKSEDAQGMDNLA 1222 PN + + + + V TS A G + ++ Sbjct 794 VTPNVMGGKPAFVITNKQGTPLGNQQIIIVTTGGNVRSVPTSTVMTS-AGGSASGTNIVS 852 Query 1223 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLM---A 1279 + + ++ + QK ++ N +++ +I A++S+ ++ T + A Sbjct 853 IVNSTSTTPSPLQALSGQKTLIS-NQSGVKMLRNISSVQASSSMAFGQKQSGTPIHQKTA 911 Query 1280 AYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIV 1339 Y+ ++T+ N G K + G ++ NS T + K F+ + V Sbjct 912 LYIGGKAVTVMSTNTSMAASGNKVMVLPGTSSNNSPATTTALSARKSFVFNAGGSPRT-V 970 Query 1340 TRCLNRVCTNYMPY 1353 T + +P Sbjct 971 TLATKSINAKSIPQ 984 >sp|Q33568|CYB_TRYBO Cytochrome b OS=Trypanoplasma borreli OX=5710 GN=MT-CYB PE=2 SV=2 Length=372 Score = 38.2 bits (87), Expect = 0.68, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 87/299 (29%), Gaps = 28/299 (9%) Query 1315 VPWDTIANYAKPFLNKVVSTTTNIVTRCLN-RVCTNYMP--YFFTLLLQL---CTFTRST 1368 + D Y F V+ +V CL+ +P + FTLL+ L F + Sbjct 22 LSGDLFRVYGLGFNLGVMIALQILVGICLSWFFFRCIIPQNWIFTLLIHLEFDLGFIIRS 81 Query 1369 NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYS 1428 I S+ + + V CL + L + I+ + L S Sbjct 82 LHIIFTSLLYFLLYIHIIKVIFLCLIFDSSMLVWFFGFLIFIFILIIAFIGYTLPCTSMS 141 Query 1429 TAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLET 1488 L V + L Y ++ + I + + L + Sbjct 142 YWGLTVFSNILATIPLIGIYICQWIWCSEF-INDFTLLKLHSIHIFLPFVLLFLIGAHFF 200 Query 1489 IQITISSFKWDLTAFGLVAEWFLAYILFTR--FFYVLGLAAIMQLFFS-YFAVHFISNSW 1545 + S L F E F ++L+ F ++ + + + Y+ F SW Sbjct 201 VLHYFLSSDGLLDRFPFYYERFFFFLLYYLRDLFLIINILCFLIYYICIYWFFVFHEESW 260 Query 1546 LM-------------WLIINLVQMA-----PISAMVRMYIFFASFYYVWKSYVHVVDGC 1586 ++ W ++ + +++ + + + + + C Sbjct 261 IIVDTLKTSDKILPEWFFLSFFGFLKSVPDKFMGLFLLFVLCFALFLFILNCILIFIYC 319 >sp|A5E287|POA1_LODEL ADP-ribose 1''-phosphate phosphatase OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=POA1 PE=3 SV=1 Length=160 Score = 36.7 bits (83), Expect = 0.78, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 59/165 (36%), Gaps = 34/165 (21%) Query 220 VYIKNAD-IVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKAT----------------- 261 V D A K V+ +A N GGG+A + Sbjct 3 VKYIRGDLFTHSAPTGKSIVLAHACNTGGSWGGGIAAVFARKYPKANRQYSEYCHKNSHL 62 Query 262 -NNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 320 ++ +++DDY + + S N + + + +Q L ++ Sbjct 63 LGTSLLLKADDYDKSKAYIA---CLFTSDFNQSPEQI-----VKYTDQSLQELAKQLKSL 114 Query 321 -----NQHEVLLAPLLSAGIFGADPIHSLRVC--VDTVRTNVYLA 358 N ++V+ P +++GIFG ++ V +D++ NVY+ Sbjct 115 PIETQNGNQVVNMPKINSGIFGVPWENTEAVLDKLDSLDFNVYVI 159 >sp|A5N5W0|PANB_CLOK5 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) OX=431943 GN=panB PE=3 SV=1 Length=280 Score = 37.9 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 64/173 (37%), Gaps = 11/173 (6%) Query 252 GVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ 311 G+AGA+ ++ + + P+ +G + ++V G +G+D Sbjct 108 GLAGAVKLEGGVSVYEQVKAIVKAQIPV-MGHIGLTP------QSVNVFGGFKVQGKDES 160 Query 312 LLKSAYENFNQHEVL-LAPLLSAGI-FGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLV 369 K+ E+ + E ++ GI + I + V + T+ + L + + Sbjct 161 KAKNIIEDAKRLEEAGAFSIVLEGIPYKLAKIITETVSIPTIGIGAGKYCDGQILVYQDM 220 Query 370 SSFLEMKSEKQVEQ--KIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE 420 K V+ E+ ++ K +ITE K + ++ K+ + + Sbjct 221 LGLFSDFKPKFVKSYGNAGEVIRKAFKDYITEVKEGIFPDEEYSFKMDDSIID 273 >sp|Q58990|Y1595_METJA UPF0104 membrane protein MJ1595 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1595 PE=3 SV=1 Length=336 Score = 37.9 bits (86), Expect = 0.88, Method: Composition-based stats. Identities = 34/268 (13%), Positives = 77/268 (29%), Gaps = 26/268 (10%) Query 1311 AVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNS 1370 +N+ P I + L V+ + + N+ F +L+ L F + Sbjct 36 LINTNPEYVILAFILQILVSVILSARWKFIIKILGYSANFKNIFLLVLMGL--FINNITP 93 Query 1371 RIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYST- 1429 ++ A + K + ++++ I+ +G + + Sbjct 94 SMRGGGEAFRAY----YLSKLEEIPKGLAFSTVVVERVLDTAIFLFFTLFVIGYFVVTGF 149 Query 1430 -AALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLET 1488 +++S + + S N + C C D S+E Sbjct 150 KYLEYLILSWIFLFSLTAIIIYLIANKGLLIKTVTKISKFICKYCSYNYDETKILQSIEE 209 Query 1489 IQITISSFKWDLTAFGLVAEWF------------------LAYILFTRFFYVLGLAAIMQ 1530 ++ FK +VA + L+Y++ + L ++ Sbjct 210 FYNSMKFFKNKRGWEVVVAIFLSVMRYIFDILKLWLLFLSLSYVVSVICVSAVYLITLLS 269 Query 1531 LFFSYFAVHFISNSWLMWLIINLVQMAP 1558 S F + +M L + + P Sbjct 270 GVLSITPSGFGTADTVMILSFSAFNIPP 297 >sp|Q5AS82|GMT1_EMENI GDP-mannose transporter 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=gmt1 PE=3 SV=2 Length=379 Score = 37.5 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 48/146 (33%), Gaps = 23/146 (16%) Query 1452 YLNSTNVTIATY--CTGSIPC----SVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGL 1505 Y+ S++ + + C S+ C +C + I T F D Sbjct 64 YVLSSDFNLNFFLLCVQSLVCIIAIQLC----------KACGLI--TYRDFNLDEARKWF 111 Query 1506 VAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRM 1565 L +++T + L+ + F + I+ ++W ++ + + Sbjct 112 PITLLLIGMIYTGSKALQFLSIPVYTIFKNLTIILIAYGEVLWFGGSVTNL----TLFSF 167 Query 1566 -YIFFASFYYVWKSYVHVVDGCNSST 1590 + F+S W H ++ +T Sbjct 168 GLMVFSSIIAAWADIKHAIESSGDAT 193 >sp|Q6CRE9|FYV8_KLULA Protein FYV8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=FYV8 PE=3 SV=2 Length=806 Score = 37.5 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 8/146 (5%) Query 57 VADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 116 V D + + +S+ +T D++ S ++ E K++ Y + Y DED ++ Sbjct 86 VNDDLDSLMHQISQEMTAKDEDVNNTSDPED---EDDAELKVSKTGYFAAYVNDEDTDDR 142 Query 117 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 176 + + + E + E TE + A + ++ E E + Q Sbjct 143 ESVKSDIESAKLAESATEINKTD-----NAKAESVSEVESVAESVKRAKVEVEPVQIVNV 197 Query 177 EDNQTTTIQTIVEVQPQLEMELTPVV 202 + + E + ++E+ P Sbjct 198 GEESFKGDDSEAESVKRADVEVEPFK 223 >sp|Q8Y4A9|PRMC_LISMO Release factor glutamine methyltransferase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=prmC PE=3 SV=1 Length=283 Score = 36.7 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 17/165 (10%) Query 415 KACVEEVTTTLEETKFLTENLLLYIDINGNLHPDS--------ATLVSDIDITFLKKDAP 466 K + L ET+ L+++I+ L P+ A ++ + ++ K AP Sbjct 18 KGLDQNAAEILLETRMGLSRSELWMEISRELEPNHEKQFEEDFARYLAGEPVQYILKTAP 77 Query 467 YIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKT 526 + D + V+IP + L+K P N + G G+ +++A Sbjct 78 FYGYDFLVTED---VLIPRPETEELVACAEAFLKKHPVKNVLDVCTGSGIIAIALKKAFP 134 Query 527 VLKKCKSAFYILPSIISNEKQEIL-----GTVSWNLREMLAHAEE 566 + S P+++ K +L V +L E EE Sbjct 135 EISVTASDISA-PALVVARKNALLLNADVRFVETDLLEAFKQNEE 178 >sp|Q9Y2T5|GPR52_HUMAN G-protein coupled receptor 52 OS=Homo sapiens OX=9606 GN=GPR52 PE=1 SV=2 Length=361 Score = 36.7 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 21/133 (16%), Positives = 48/133 (36%), Gaps = 17/133 (13%) Query 1467 SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLA 1526 S+ C C+ S+D Y ++ ++ W + ++F F+ G Sbjct 128 SMACLACI----SVDRYLAITKPLSYNQLVTPCRLRICIILIWIYSCLIFLPSFFGWGKP 183 Query 1527 AIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGC 1586 F + A ++++++ I+ L+ + + + V +Y H+ C Sbjct 184 GYHGDIFEWCATSWLTSAYFTGFIVCLL-------------YAPAAFVVCFTYFHIFKIC 230 Query 1587 NSSTCMMCYKRNR 1599 T + +R R Sbjct 231 RQHTKEINDRRAR 243 >sp|A0A452G813|CSCL1_CAPHI CSC1-like protein 1 OS=Capra hircus OX=9925 GN=TMEM63A PE=1 SV=2 Length=803 Score = 37.1 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 40/290 (14%), Positives = 92/290 (32%), Gaps = 49/290 (17%) Query 1338 IVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASF 1397 VT+ ++ + + FF LL A +PT + +T+ Sbjct 449 NVTKPIHALNDPIISQFFPTLLLW---------SFSALLPTIVCYSTL---------LES 490 Query 1398 NYLKSPNFSKLINIIIWFLLLSVCLGS---LIYSTAALGVLM----SNLGMPSYCTGYRE 1450 ++ KS ++ + FL+ V + L L S + C + Sbjct 491 HWTKSGENRIMMTKVYIFLIFMVLILPSLGLTSLDFFFRWLFDKTSSEASIRLECVFLPD 550 Query 1451 GYLNSTNVTIAT-YCTGSI----PCSVCLSGLDSLDTYPSLE---TIQITISSFKWDLTA 1502 N IA+ + + + L + + + Q +++ Sbjct 551 QGAFFVNYVIASAFIGNGMELLRLPGLILYTFRMVMAKTAADRRNVKQHQAFEYEFGAMY 610 Query 1503 FGLVAEW--FLAYILFTRFFYVLGLAAIM--------QLFFSYFA------VHFISNSWL 1546 ++ + +AY + GL I+ L+F+Y +HF + + Sbjct 611 AWMLCVFTVIMAYSITCPIIVPFGLIYILLKHMVDRHNLYFAYLPAKLEKRIHFAAVNQA 670 Query 1547 MWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYK 1596 + I + + +R+ + + + + + C + TC C++ Sbjct 671 LAAPILCLFWLYFFSFLRLGLKAPLTLFTFLVLLLTILVCLAYTCFGCFR 720 >sp|Q6YQV9|EFG_ONYPE Elongation factor G OS=Onion yellows phytoplasma (strain OY-M) OX=262768 GN=fusA PE=3 SV=1 Length=688 Score = 36.7 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 32/141 (23%), Positives = 54/141 (38%), Gaps = 10/141 (7%) Query 480 AVVIPTKKAG---GTTEMLAKALR-KVPTDNYITTYPGQGL-NGYTVEEAKTVLKKCKSA 534 AV + +AG T + +A KVP ++ G Y +E K L SA Sbjct 102 AVTVIDAQAGVEPQTETVWRQASEYKVPRVIFVNKMDKVGADFAYAIETLKQRLGVHASA 161 Query 535 FYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQ 594 P N+ I+ V N E + ET K++P+ + ++I T + + Sbjct 162 IQ-WPIGSENDFNGIIDLVEMNAFEYDNTSPETGKVVPIPSDLESITQTKRNELIET--- 217 Query 595 EGVVDYGARFYFYTSKTTVAS 615 +D Y Y + ++S Sbjct 218 LSTLDEELMMY-YLEEKPISS 237 >sp|Q97KC9|SYE_CLOAB Glutamate--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) OX=272562 GN=gltX PE=3 SV=1 Length=485 Score = 35.9 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 22/138 (16%), Positives = 51/138 (37%), Gaps = 12/138 (9%) Query 585 QRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEA 644 + Y + +V+ G +Y + SK + L L P Y H NL + Sbjct 90 KGLYLDYAKK--LVEKGEAYYCFCSKERLDILKTNSEALKR-----PFKYDKHCANLSKE 142 Query 645 ARYMR-SLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISL--AGSYKDWSYSG- 700 + VP + ++P + + + + ++ + L + Y ++++ Sbjct 143 EVQEKLDAGVPYVIRQNNPTTGSTTFDDVIYGRISVDNSELDDMILIKSDGYPTYNFANV 202 Query 701 -QSTQLGIEFLKRGDKSV 717 +GI + RG++ + Sbjct 203 VDDHLMGITHVVRGNEYL 220 >sp|P51937|NU1M_DROSU NADH-ubiquinone oxidoreductase chain 1 OS=Drosophila subobscura OX=7241 GN=mt:ND1 PE=3 SV=1 Length=312 Score = 35.5 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 78/257 (30%), Gaps = 38/257 (15%) Query 1347 CTNYMPYFFTLL----LQLCTFTRSTNSRIKASMPTTIA---KNTVKSVGKFCLEASFNY 1399 C F TLL L + N +P K K L +Y Sbjct 16 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSY 75 Query 1400 LKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVT 1459 SP FS +++ +W + + ++LG+ + G+ +++N Sbjct 76 YISPIFSLFLSLFVWMCMPFFVKLYSFNLGGLFFLCCTSLGVYTV---MVAGWSSNSNYA 132 Query 1460 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 1519 + L GL ++ +TI +S L+ L+ + + Y + + Sbjct 133 L-------------LGGLRAVA-----QTISYEVSLALILLSFVFLIGSYNMVYFFYYQI 174 Query 1520 FYVLGLAAIMQLF---------FSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFA 1570 + + + F + N+ + A++ M + + Sbjct 175 YVWFLIILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYAS 234 Query 1571 SFYYVWKSYVHVVDGCN 1587 + V + GC+ Sbjct 235 ILFMSMLFCV-IFLGCD 250 >sp|P07710|NU1M_DROYA NADH-ubiquinone oxidoreductase chain 1 OS=Drosophila yakuba OX=7245 GN=mt:ND1 PE=3 SV=1 Length=324 Score = 35.5 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 78/257 (30%), Gaps = 38/257 (15%) Query 1347 CTNYMPYFFTLL----LQLCTFTRSTNSRIKASMPTTIA---KNTVKSVGKFCLEASFNY 1399 C F TLL L + N +P K K L +Y Sbjct 16 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSY 75 Query 1400 LKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVT 1459 SP FS +++ +W + + ++LG+ + G+ +++N Sbjct 76 YISPIFSLFLSLFVWMCMPFFVKLYSFNLGGLFFLCCTSLGVYTV---MVAGWSSNSNYA 132 Query 1460 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 1519 + L GL ++ +TI +S L+ L+ + + Y + + Sbjct 133 L-------------LGGLRAVA-----QTISYEVSLALIMLSFIFLIGSYNMIYFFYYQI 174 Query 1520 FYVLGLAAIMQLF---------FSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFA 1570 + + + F + N+ + A++ M + + Sbjct 175 YMWFLIILFPMSLVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYAS 234 Query 1571 SFYYVWKSYVHVVDGCN 1587 + V + GC+ Sbjct 235 ILFMSMLFCV-IFLGCD 250 >sp|B2V5H4|SYE_CLOBA Glutamate--tRNA ligase OS=Clostridium botulinum (strain Alaska E43 / Type E3) OX=508767 GN=gltX PE=3 SV=1 Length=485 Score = 35.5 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 28/148 (19%), Positives = 59/148 (40%), Gaps = 16/148 (11%) Query 585 QRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNL--- 641 +RK ++ + +V+ G +Y + SK + L L P Y H L+L Sbjct 88 ERKAIYLEYAKNLVEKGEAYYCFCSKDRLDMLKENAEALKR-----PFKYDKHCLHLTKE 142 Query 642 EEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISL--AGSYKDWSYS 699 E A + L P + ++P + + T + +E + L + ++++ Sbjct 143 EIEANLAKGL--PYVIRQNNPTTGSTTFDDVIYGKITVDNSELEDMILIKSDGLPTYNFA 200 Query 700 G--QSTQLGIEFLKRGDKSVYYTSNPTT 725 +GI + RG++ + +S+P Sbjct 201 NVVDDHLMGITHIVRGNEYL--SSSPKY 226 >sp|P18929|NU1M_DROME NADH-ubiquinone oxidoreductase chain 1 OS=Drosophila melanogaster OX=7227 GN=mt:ND1 PE=3 SV=3 Length=312 Score = 34.8 bits (78), Expect = 7.8, Method: Composition-based stats. Identities = 38/257 (15%), Positives = 78/257 (30%), Gaps = 38/257 (15%) Query 1347 CTNYMPYFFTLL----LQLCTFTRSTNSRIKASMPTTIA---KNTVKSVGKFCLEASFNY 1399 C F TLL L + N +P K K L +Y Sbjct 16 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSY 75 Query 1400 LKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVT 1459 SP FS +++ +W + + ++LG+ + G+ +++N Sbjct 76 YISPIFSLFLSLFVWMCMPFFVKLYSFNLGGLFFLCCTSLGVYTV---MVAGWSSNSNYA 132 Query 1460 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 1519 + L GL ++ +TI +S L+ L+ + + Y F + Sbjct 133 L-------------LGGLRAVA-----QTISYEVSLALILLSFIFLIGSYNMIYFFFYQV 174 Query 1520 FYVLGLAAIMQLF---------FSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFA 1570 + + + F + N+ + A++ M + + Sbjct 175 YMWFLIILFPMALVWMSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYAS 234 Query 1571 SFYYVWKSYVHVVDGCN 1587 + V + GC+ Sbjct 235 ILFMSMLFCV-IFLGCD 250 >sp|A1EGX6|FSCB_MOUSE Fibrous sheath CABYR-binding protein OS=Mus musculus OX=10090 GN=Fscb PE=1 SV=1 Length=1074 Score = 35.2 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 23/144 (16%), Positives = 40/144 (28%), Gaps = 14/144 (10%) Query 80 DEWSMATYYLFDESG-----EFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTE 134 ++++ + E E A PP ++ + E P + + E Sbjct 418 EKFATDEVF---EEYKPPIIEEVSADKATAEVQPPSAEDASEEVASSEVLPPSTEQGTVE 474 Query 135 D---DYQGKPLEFGATSAALQPEEE---QEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIV 188 D + P E G T QP EE + L ++ V E Sbjct 475 DLTAEVLSTPTEEGPTEVPPQPTEEGPAEVPPPLSEEGPAEVPPAPAEEAPAEVLPPPAE 534 Query 189 EVQPQLEMELTPVVQTIEVNSFSG 212 E ++ LT + Sbjct 535 EAPAEVPPPLTEEGPAEVPPPLTE 558 >sp|Q39994|CALX_HELTU Calnexin homolog OS=Helianthus tuberosus OX=4233 PE=2 SV=1 Length=540 Score = 35.2 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 41/126 (33%), Gaps = 20/126 (16%) Query 88 YLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGAT 147 +L E E L PD D+++ + +E + +D + P+E Sbjct 211 FLSSEDFEPALIPTKT----IPDPDDKKPEDWDERAKIPDPEATKPDDWDEDAPME---- 262 Query 148 SAALQPEEEQEEDWLDDDSQQTVGQQ----------DGSEDNQTTTIQTIVEVQPQLEME 197 L E E+ E WLDD+ ++ + + E E P Sbjct 263 --ILDEEAEKPEGWLDDEPEEIDDPEAVKPEDWDDEEDGEWEAPQIENPKCESAPGCGEW 320 Query 198 LTPVVQ 203 P+ + Sbjct 321 RRPLKR 326 >sp|P84294|NU1M_DROPE NADH-ubiquinone oxidoreductase chain 1 OS=Drosophila persimilis OX=7234 GN=mt:ND1 PE=3 SV=2 Length=315 Score = 34.8 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 78/257 (30%), Gaps = 38/257 (15%) Query 1347 CTNYMPYFFTLL----LQLCTFTRSTNSRIKASMPTTIA---KNTVKSVGKFCLEASFNY 1399 C F TLL L + N +P K K L +Y Sbjct 19 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSY 78 Query 1400 LKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVT 1459 SP FS +++ +W + + ++LG+ + G+ +++N Sbjct 79 YISPIFSLFLSLFVWMCMPFFVKLYSFNLGGLFFLCCTSLGVYTV---MIAGWSSNSNYA 135 Query 1460 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 1519 + L GL ++ +TI +S L+ L+ + + Y + + Sbjct 136 L-------------LGGLRAVA-----QTISYEVSLALILLSFVFLIGSYNMMYFFYYQI 177 Query 1520 FYVLGLAAIMQLF---------FSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFA 1570 + + + F + N+ + A++ M + + Sbjct 178 YIWFLIILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYAS 237 Query 1571 SFYYVWKSYVHVVDGCN 1587 + V + GC+ Sbjct 238 ILFMSMLFCV-IFLGCD 253 >sp|Q6Q487|CALX_ASPFU Calnexin homolog OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=AFUA_4G12850 PE=2 SV=2 Length=563 Score = 34.8 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 35/104 (34%), Gaps = 22/104 (21%) Query 93 SGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQ 152 GE + F PP E+E D D KP ++ + Sbjct 230 DGEAVKNGTLLEDFAPPVNPEKEID-----------------DPKDKKPADWVDEAKIPD 272 Query 153 PEEEQEEDWLDDDSQQTVGQ-----QDGSEDNQTTTIQTIVEVQ 191 PE ++ +DW +D + V + +D ED T+ E Sbjct 273 PEAKKPDDWDEDAPYEIVDEEATMPEDWLEDEPTSIPDPEAEKP 316 Lambda K H a alpha 0.318 0.124 0.313 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0380 0.140 1.90 42.6 43.6 Effective search space used: 236670339240 Database: uniprot_sprot.fasta Posted date: Feb 9, 2024 7:20 PM Number of letters in database: 206,533,160 Number of sequences in database: 570,830 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40