PSIBLAST 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: uniprot_sprot.fasta 571,282 sequences; 206,678,396 total letters Results from round 1 Query= YP_009725295.1 orf1a polyprotein [Severe acute respiratory syndrome coronavirus 2] Length=4405 Score E Sequences producing significant alignments: (Bits) Value sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp... 9175 0.0 sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 9137 0.0 sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi... 7509 0.0 sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R... 7477 0.0 sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H... 7475 0.0 sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 7475 0.0 sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2... 7462 0.0 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 7448 0.0 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 7448 0.0 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 7444 0.0 sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H... 2320 0.0 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 2318 0.0 sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi... 2196 0.0 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 2190 0.0 sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H... 2179 0.0 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 2174 0.0 sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru... 1883 0.0 sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru... 1882 0.0 sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus... 1872 0.0 sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 1871 0.0 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 1871 0.0 sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus... 1868 0.0 sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus... 1868 0.0 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 1861 0.0 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 1861 0.0 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 1860 0.0 sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus... 1845 0.0 sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru... 1839 0.0 sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru... 1838 0.0 sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1... 1837 0.0 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 1837 0.0 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 1835 0.0 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 1833 0.0 sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H... 1833 0.0 sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus... 1832 0.0 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 1831 0.0 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 1831 0.0 sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus... 1830 0.0 sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus... 1826 0.0 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 1825 0.0 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 1823 0.0 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 1818 0.0 sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5... 1228 0.0 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 1226 0.0 sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus... 1192 0.0 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 1192 0.0 sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ... 1189 0.0 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 1187 0.0 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 1182 0.0 sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus... 1182 0.0 sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss... 1123 0.0 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 1122 0.0 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 1122 0.0 sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious ... 1118 0.0 sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious b... 1118 0.0 sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious b... 1115 0.0 sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 1114 0.0 sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 1114 0.0 sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 1110 0.0 sp|Q4J9D2|Y1252_SULAC Uncharacterized protein Saci_1252 OS=Sulfol... 73.2 9e-13 sp|Q8ZXT3|Y1111_PYRAE Uncharacterized protein PAE1111 OS=Pyrobacu... 72.8 1e-12 sp|Q97UU4|Y2899_SACS2 Uncharacterized protein SSO2899 OS=Saccharo... 72.4 1e-12 sp|Q9WYX8|Y508_THEMA Uncharacterized protein TM_0508 OS=Thermotog... 76.3 5e-12 sp|Q96XY5|Y2383_SULTO Uncharacterized protein STK_23830 OS=Sulfur... 67.0 1e-10 sp|P0C6F3|R1A_BEV Replicase polyprotein 1a OS=Berne virus OX=1115... 65.5 1e-08 sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11... 65.1 2e-08 sp|P36327|POLN_EEVV3 Polyprotein P1234 OS=Venezuelan equine encep... 63.2 7e-08 sp|Q8CAS9|PARP9_MOUSE Protein mono-ADP-ribosyltransferase PARP9 O... 62.4 9e-08 sp|P27282|POLN_EEVVT Polyprotein P1234 OS=Venezuelan equine encep... 62.8 1e-07 sp|P36328|POLN_EEVVP Polyprotein P1234 OS=Venezuelan equine encep... 62.8 1e-07 sp|A7MG20|YMDB_CROS8 O-acetyl-ADP-ribose deacetylase OS=Cronobact... 58.2 1e-07 sp|E1SDF1|YMDB1_PANVC O-acetyl-ADP-ribose deacetylase 1 OS=Pantoe... 56.6 4e-07 sp|A8AI35|YMDB_CITK8 O-acetyl-ADP-ribose deacetylase OS=Citrobact... 56.6 5e-07 sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobact... 56.2 6e-07 sp|P0A8D6|YMDB_ECOLI O-acetyl-ADP-ribose deacetylase OS=Escherich... 55.8 8e-07 sp|P0A8D7|YMDB_ECOL6 O-acetyl-ADP-ribose deacetylase OS=Escherich... 55.8 8e-07 sp|P0A8D8|YMDB_ECO57 O-acetyl-ADP-ribose deacetylase OS=Escherich... 55.8 8e-07 sp|Q8V294|POLN_EEVVC Polyprotein P1234 OS=Venezuelan equine encep... 59.3 1e-06 sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonell... 54.3 3e-06 sp|A4W960|YMDB_ENT38 O-acetyl-ADP-ribose deacetylase OS=Enterobac... 53.9 4e-06 sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonell... 53.5 5e-06 sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonell... 53.5 5e-06 sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiell... 53.1 6e-06 sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiell... 53.1 6e-06 sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonell... 53.1 7e-06 sp|Q9WJC7|POLN_EEVVM Polyprotein P1234 OS=Venezuelan equine encep... 56.6 7e-06 sp|Q460N5|PAR14_HUMAN Protein mono-ADP-ribosyltransferase PARP14 ... 56.2 8e-06 sp|D5CE05|YMDB_ENTCC O-acetyl-ADP-ribose deacetylase OS=Enterobac... 52.0 2e-05 sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=... 52.0 2e-05 sp|Q72M93|Y3295_LEPIC Macro domain-containing protein LIC_13295 O... 51.6 2e-05 sp|B5RBF3|YMDB_SALG2 O-acetyl-ADP-ribose deacetylase OS=Salmonell... 51.6 2e-05 sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherich... 51.2 3e-05 sp|Q0T5Z6|YMDB_SHIF8 O-acetyl-ADP-ribose deacetylase OS=Shigella ... 50.8 4e-05 sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 OX=3... 53.5 7e-05 sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobact... 50.1 8e-05 sp|Q32E73|YMDB_SHIDS O-acetyl-ADP-ribose deacetylase OS=Shigella ... 50.1 8e-05 sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX... 53.1 8e-05 sp|Q8RHQ2|Y1951_FUSNN Uncharacterized protein FN1951 OS=Fusobacte... 48.9 2e-04 sp|Q2EMV9|PAR14_MOUSE Protein mono-ADP-ribosyltransferase PARP14 ... 51.6 2e-04 sp|Q8Q0F9|Y177_METMA Macro domain-containing protein MM_0177 OS=M... 48.9 2e-04 sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=... 47.8 4e-04 sp|Q8RB30|Y995_CALS4 Macro domain-containing protein TTE0995 OS=C... 47.4 5e-04 sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=... 47.8 5e-04 sp|Q8IXQ6|PARP9_HUMAN Protein mono-ADP-ribosyltransferase PARP9 O... 50.1 6e-04 sp|E1PL40|YMDB2_PANVC O-acetyl-ADP-ribose deacetylase 2 OS=Pantoe... 47.0 7e-04 sp|Q8BCR0|POLN_RUBVN Non-structural polyprotein p200 OS=Rubella v... 49.3 0.001 sp|Q8Y2K1|Y334_RALN1 Macro domain-containing protein RSc0334 OS=R... 46.2 0.001 sp|P13889|POLN_RUBVT Non-structural polyprotein p200 OS=Rubella v... 48.1 0.002 sp|Q9EYI6|Y189_STRNO Macro domain-containing protein in sno 5'reg... 45.4 0.003 sp|O40955|POLN_RUBVR Non-structural polyprotein p200 OS=Rubella v... 47.8 0.004 sp|Q97AU0|Y719_THEVO Uncharacterized protein TV0719 OS=Thermoplas... 45.1 0.004 sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=C... 44.7 0.004 sp|Q985D2|Y7730_RHILO Macro domain-containing protein mll7730 OS=... 44.7 0.004 sp|Q93SX7|Y189_ACISE Macro domain-containing protein OS=Acinetoba... 44.3 0.006 sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=... 43.9 0.009 sp|O59182|Y1513_PYRHO Uncharacterized protein PH1513 OS=Pyrococcu... 43.5 0.013 sp|Q9V0Y3|Y656_PYRAB Uncharacterized protein PYRAB06560 OS=Pyroco... 43.1 0.016 sp|P27283|POLN_SINDO Polyprotein P1234 OS=Sindbis virus subtype O... 45.4 0.019 sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=... 42.7 0.020 sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=... 42.7 0.021 sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermopla... 42.7 0.026 sp|Q99IE7|POLN_RUBVO Non-structural polyprotein p200 OS=Rubella v... 44.7 0.028 sp|Q99IE5|POLN_RUBVV Non-structural polyprotein p200 OS=Rubella v... 44.7 0.028 sp|Q6X2U2|POLN_RUBVC Non-structural polyprotein p200 OS=Rubella v... 44.3 0.035 sp|Q6X2U4|POLN_RUBVB Non-structural polyprotein p200 OS=Rubella v... 44.3 0.039 sp|Q86924|POLN_AURAV Polyprotein P1234 OS=Aura virus OX=44158 PE=... 43.9 0.047 sp|Q6PAV8|MACD2_XENLA ADP-ribose glycohydrolase MACROD2 OS=Xenopu... 43.1 0.055 sp|Q9BQ69|MACD1_HUMAN ADP-ribose glycohydrolase MACROD1 OS=Homo s... 42.7 0.058 sp|Q7MTZ7|MACRO_PORGI Macro domain-containing protein PG1779 OS=P... 41.2 0.065 sp|Q9ZBG3|Y6450_STRCO Macro domain-containing protein SCO6450 OS=... 41.2 0.071 sp|Q86500|POLN_RUBVM Non-structural polyprotein p200 OS=Rubella v... 42.7 0.11 sp|Q9J6K9|POLN_RUBVD Non-structural polyprotein p200 OS=Rubella v... 42.7 0.11 sp|Q8K4G6|MACD1_RAT ADP-ribose glycohydrolase MACROD1 (Fragment) ... 41.6 0.11 sp|P03317|POLN_SINDV Polyprotein P1234 OS=Sindbis virus OX=11034 ... 42.4 0.14 sp|Q306W6|POLN_EEEV1 Polyprotein P1234 OS=Eastern equine encephal... 42.4 0.14 sp|O28751|Y1521_ARCFU ADP-ribose glycohydrolase AF_1521 OS=Archae... 40.4 0.15 sp|Q44020|YGB2_CUPNE Macro domain-containing protein in gbd 3'reg... 40.0 0.17 sp|Q9YBE9|Y1648_AERPE Uncharacterized protein APE_1648.1 OS=Aerop... 40.0 0.20 sp|Q2KHU5|MACD1_BOVIN ADP-ribose glycohydrolase MACROD1 OS=Bos ta... 40.8 0.22 sp|P13896|POLN_WEEV Polyprotein P1234 OS=Western equine encephali... 41.2 0.34 sp|Q9VHM2|VP35L_DROME VPS35 endosomal protein sorting factor-like... 40.8 0.35 sp|Q306W8|POLN_EEEV8 Polyprotein P1234 OS=Eastern equine encephal... 40.4 0.63 sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian hep... 40.0 0.73 sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=P... 38.1 0.83 sp|Q922B1|MACD1_MOUSE ADP-ribose glycohydrolase MACROD1 OS=Mus mu... 39.3 0.83 sp|Q9RUV0|PPDE_DEIRA Phosphatase/phosphodiesterase DR_1281 OS=Dei... 37.7 1.9 sp|Q4QXJ8|POLN_EEEVF Polyprotein P1234 OS=Eastern equine encephal... 38.5 2.1 sp|Q9KHE2|Y189_STRGR Macro domain-containing protein in non 5'reg... 36.6 2.3 sp|P26627|R1AB_CVMJD Replicase polyprotein 1ab (Fragment) OS=Muri... 38.1 2.4 sp|Q7TZB9|Y1934_MYCBO Uncharacterized protein Mb1934c OS=Mycobact... 37.7 2.5 sp|P9WK29|Y1899_MYCTU Uncharacterized protein Rv1899c OS=Mycobact... 37.7 2.5 sp|P9WK28|Y1899_MYCTO Uncharacterized protein MT1950 OS=Mycobacte... 37.7 2.5 sp|A0A0D2UG83|H2AY_CAPO3 Histone macroH2A1.1 OS=Capsaspora owczar... 37.7 2.7 sp|Q8Y3S3|Y2759_LISMO Macro domain-containing protein lmo2759 OS=... 36.2 3.1 sp|Q926Y8|Y2902_LISIN Macro domain-containing protein lin2902 OS=... 36.2 3.1 sp|Q3UYG8|MACD2_MOUSE ADP-ribose glycohydrolase MACROD2 OS=Mus mu... 37.4 3.6 sp|B4S3G9|PDXJ_PROA2 Pyridoxine 5'-phosphate synthase OS=Prosthec... 36.6 3.7 sp|A1Z1Q3|MACD2_HUMAN ADP-ribose glycohydrolase MACROD2 OS=Homo s... 37.0 4.2 sp|Q71W03|Y2748_LISMF Macro domain-containing protein LMOf2365_27... 35.8 4.2 sp|Q3ZX83|TIG_DEHMC Trigger factor OS=Dehalococcoides mccartyi (s... 36.6 6.0 sp|P43349|TCTP_SOLTU Translationally-controlled tumor protein hom... 35.0 7.1 sp|B0C385|RPOC2_ACAM1 DNA-directed RNA polymerase subunit beta' O... 36.6 7.3 sp|Q751L1|RL43_EREGS Large ribosomal subunit protein eL43 OS=Erem... 33.1 9.5 sp|Q5JER1|Y1890_THEKO Uncharacterized protein TK1890 OS=Thermococ... 34.7 9.9 sp|Q8U0P9|Y1536_PYRFU Uncharacterized protein PF1536 OS=Pyrococcu... 35.0 10.0 >sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1 Length=4405 Score = 9175 bits (23807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 4405/4405 (100%), Positives = 4405/4405 (100%), Gaps = 0/4405 (0%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV Sbjct 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK Sbjct 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG Sbjct 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW Sbjct 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI Sbjct 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL Sbjct 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC Sbjct 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF Sbjct 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA Sbjct 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY Sbjct 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV Sbjct 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC Sbjct 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG Sbjct 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN 840 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN Sbjct 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN 840 Query 841 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW 900 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW Sbjct 841 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW 900 Query 901 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL 960 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL Sbjct 901 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL 960 Query 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV 1020 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV Sbjct 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV 1020 Query 1021 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN Sbjct 1021 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 Query 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ 1140 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ Sbjct 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ 1140 Query 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE 1200 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE Sbjct 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE 1200 Query 1201 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN 1260 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN Sbjct 1201 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN 1260 Query 1261 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV 1320 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV Sbjct 1261 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV 1320 Query 1321 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA 1380 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA Sbjct 1321 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA 1380 Query 1381 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND 1440 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND Sbjct 1381 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND 1440 Query 1441 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH 1500 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH Sbjct 1441 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH 1500 Query 1501 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL 1560 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL Sbjct 1501 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL 1560 Query 1561 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV Sbjct 1561 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 Query 1621 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL Sbjct 1621 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 Query 1681 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN 1740 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN Sbjct 1681 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN 1740 Query 1741 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ 1800 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ Sbjct 1741 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ 1800 Query 1801 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK 1860 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK Sbjct 1801 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK 1860 Query 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY Sbjct 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 Query 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK Sbjct 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 Query 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA Sbjct 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 Query 2041 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV Sbjct 2041 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 Query 2101 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC 2160 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC Sbjct 2101 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC 2160 Query 2161 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS Sbjct 2161 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 Query 2221 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT 2280 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT Sbjct 2221 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT 2280 Query 2281 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV 2340 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV Sbjct 2281 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV 2340 Query 2341 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV Sbjct 2341 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 Query 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA Sbjct 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 Query 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH Sbjct 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 Query 2521 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV Sbjct 2521 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 Query 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG 2640 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG Sbjct 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG 2640 Query 2641 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN 2700 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN Sbjct 2641 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN 2700 Query 2701 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL 2760 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL Sbjct 2701 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL 2760 Query 2761 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI 2820 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI Sbjct 2761 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI 2820 Query 2821 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD 2880 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD Sbjct 2821 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD 2880 Query 2881 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE 2940 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE Sbjct 2881 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE 2940 Query 2941 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST 3000 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST Sbjct 2941 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST 3000 Query 3001 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL 3060 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL Sbjct 3001 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL 3060 Query 3061 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV 3120 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV Sbjct 3061 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV 3120 Query 3121 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL 3180 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL Sbjct 3121 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL 3180 Query 3181 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND 3240 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND Sbjct 3181 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND 3240 Query 3241 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY 3300 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY Sbjct 3241 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY 3300 Query 3301 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK 3360 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK Sbjct 3301 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK 3360 Query 3361 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV 3420 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV Sbjct 3361 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV 3420 Query 3421 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR 3480 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR Sbjct 3421 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR 3480 Query 3481 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN 3540 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN Sbjct 3481 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN 3540 Query 3541 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW 3600 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW Sbjct 3541 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW 3600 Query 3601 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV 3660 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV Sbjct 3601 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV 3660 Query 3661 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK 3720 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK Sbjct 3661 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK 3720 Query 3721 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM 3780 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM Sbjct 3721 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM 3780 Query 3781 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL 3840 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL Sbjct 3781 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL 3840 Query 3841 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL 3900 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL Sbjct 3841 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL 3900 Query 3901 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA 3960 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA Sbjct 3901 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA 3960 Query 3961 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED 4020 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED Sbjct 3961 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED 4020 Query 4021 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY 4080 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY Sbjct 4021 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY 4080 Query 4081 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ 4140 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ Sbjct 4081 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ 4140 Query 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD Sbjct 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200 Query 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV 4260 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV Sbjct 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV 4260 Query 4261 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES 4320 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES Sbjct 4261 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES 4320 Query 4321 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG 4380 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG Sbjct 4321 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG 4380 Query 4381 CSCDQLREPMLQSADAQSFLNGFAV 4405 CSCDQLREPMLQSADAQSFLNGFAV Sbjct 4381 CSCDQLREPMLQSADAQSFLNGFAV 4405 >sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 9137 bits (23709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 4401/4401 (100%), Positives = 4401/4401 (100%), Gaps = 0/4401 (0%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV Sbjct 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK Sbjct 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG Sbjct 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW Sbjct 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI Sbjct 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL Sbjct 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC Sbjct 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF Sbjct 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA Sbjct 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY Sbjct 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV Sbjct 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC Sbjct 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG Sbjct 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN 840 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN Sbjct 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN 840 Query 841 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW 900 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW Sbjct 841 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW 900 Query 901 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL 960 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL Sbjct 901 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL 960 Query 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV 1020 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV Sbjct 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV 1020 Query 1021 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN Sbjct 1021 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 Query 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ 1140 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ Sbjct 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ 1140 Query 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE 1200 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE Sbjct 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE 1200 Query 1201 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN 1260 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN Sbjct 1201 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN 1260 Query 1261 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV 1320 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV Sbjct 1261 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV 1320 Query 1321 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA 1380 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA Sbjct 1321 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA 1380 Query 1381 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND 1440 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND Sbjct 1381 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND 1440 Query 1441 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH 1500 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH Sbjct 1441 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH 1500 Query 1501 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL 1560 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL Sbjct 1501 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL 1560 Query 1561 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV Sbjct 1561 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 Query 1621 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL Sbjct 1621 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 Query 1681 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN 1740 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN Sbjct 1681 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN 1740 Query 1741 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ 1800 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ Sbjct 1741 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ 1800 Query 1801 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK 1860 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK Sbjct 1801 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK 1860 Query 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY Sbjct 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 Query 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK Sbjct 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 Query 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA Sbjct 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 Query 2041 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV Sbjct 2041 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 Query 2101 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC 2160 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC Sbjct 2101 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC 2160 Query 2161 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS Sbjct 2161 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 Query 2221 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT 2280 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT Sbjct 2221 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT 2280 Query 2281 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV 2340 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV Sbjct 2281 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV 2340 Query 2341 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV Sbjct 2341 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 Query 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA Sbjct 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 Query 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH Sbjct 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 Query 2521 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV Sbjct 2521 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 Query 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG 2640 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG Sbjct 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG 2640 Query 2641 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN 2700 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN Sbjct 2641 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN 2700 Query 2701 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL 2760 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL Sbjct 2701 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL 2760 Query 2761 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI 2820 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI Sbjct 2761 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI 2820 Query 2821 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD 2880 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD Sbjct 2821 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD 2880 Query 2881 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE 2940 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE Sbjct 2881 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE 2940 Query 2941 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST 3000 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST Sbjct 2941 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST 3000 Query 3001 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL 3060 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL Sbjct 3001 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL 3060 Query 3061 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV 3120 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV Sbjct 3061 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV 3120 Query 3121 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL 3180 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL Sbjct 3121 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL 3180 Query 3181 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND 3240 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND Sbjct 3181 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND 3240 Query 3241 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY 3300 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY Sbjct 3241 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY 3300 Query 3301 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK 3360 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK Sbjct 3301 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK 3360 Query 3361 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV 3420 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV Sbjct 3361 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV 3420 Query 3421 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR 3480 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR Sbjct 3421 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR 3480 Query 3481 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN 3540 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN Sbjct 3481 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN 3540 Query 3541 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW 3600 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW Sbjct 3541 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW 3600 Query 3601 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV 3660 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV Sbjct 3601 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV 3660 Query 3661 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK 3720 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK Sbjct 3661 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK 3720 Query 3721 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM 3780 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM Sbjct 3721 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM 3780 Query 3781 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL 3840 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL Sbjct 3781 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL 3840 Query 3841 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL 3900 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL Sbjct 3841 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL 3900 Query 3901 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA 3960 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA Sbjct 3901 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA 3960 Query 3961 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED 4020 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED Sbjct 3961 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED 4020 Query 4021 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY 4080 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY Sbjct 4021 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY 4080 Query 4081 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ 4140 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ Sbjct 4081 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ 4140 Query 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD Sbjct 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200 Query 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV 4260 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV Sbjct 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV 4260 Query 4261 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES 4320 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES Sbjct 4261 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES 4320 Query 4321 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG 4380 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG Sbjct 4321 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG 4380 Query 4381 CSCDQLREPMLQSADAQSFLN 4401 CSCDQLREPMLQSADAQSFLN Sbjct 4381 CSCDQLREPMLQSADAQSFLN 4401 >sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=1a PE=1 SV=1 Length=4382 Score = 7509 bits (19483), Expect = 0.0, Method: Compositional matrix adjust. Identities = 3544/4412 (80%), Positives = 3942/4412 (89%), Gaps = 37/4412 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA + HGH +VELVAE++GIQYGRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYG DLKS+DLGDELGTDP ED+++NWNTKH SG REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A TRYVDNNFCGPDGYPL+CIKD LARAGK+ CTLSEQLD+I++KRGVYCCR+HEHEIAW Sbjct 181 AVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVASP ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + E+GPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+Q+S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIF+RTL+ A +S+ LQ+AA+TILDGIS+ SLRL+DAM++TSDL TN++++MAY Sbjct 541 AGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ TSQWL+N+ GT EKL+P+ +W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVC+NGLMLLEIKD E+YCAL+P ++ TNN F LKGGAP K VTFG+DTV EVQGYK+V Sbjct 781 TPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQ-YEYGTEDDYQGK 958 WS+AT+YLFD++GE +S MYCSFYPPDE+EE+ EEE T +EYGTEDDYQG Sbjct 901 WSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGL 960 Query 959 PLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 1018 PLEFGA++ ++ EEE+EEDWLDD ++Q+ E+ Sbjct 961 PLEFGASAETVRVEEEEEEDWLDDTTEQS-------------------EI-----EPEPE 996 Query 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 VN F+GYLKLTDNV IK DIV+EA+ P V+VNAAN++LKHGGGVAGALNKA Sbjct 997 PTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKA 1056 Query 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 1138 TN AMQ ESDDYI NGPL VGGSC+LSGHNLAK CLHVVGPN+N GEDIQLLK+AYENF Sbjct 1057 TNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENF 1116 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 N ++LLAPLLSAGIFGA P+ SL+VCV TVRT VY+AV DK LY+++V +L+ + Sbjct 1117 NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPR- 1175 Query 1199 VEQKIAEIPKEEVKPFITESK---PSVEQRKQDDK-KIKACVEEVTTTLEETKFLTENLL 1254 E PK+E P +SK SV Q+ D K KIKAC++EVTTTLEETKFLT LL Sbjct 1176 -----VEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLL 1230 Query 1255 LYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLA 1314 L+ DING L+ DS ++ D++FL+KDAPY+VGDV+ G +T VVIP+KKAGGTTEML+ Sbjct 1231 LFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLS 1290 Query 1315 KALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWN 1374 +AL+KVP D YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS N K+EILGTVSWN Sbjct 1291 RALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWN 1350 Query 1375 LREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASL 1434 LREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIKIQEG+VDYG RF+FYTSK VAS+ Sbjct 1351 LREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASI 1410 Query 1435 INTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSS 1494 I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK PA VSVSSPDAVT YNGYLTSSS Sbjct 1411 ITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSS 1470 Query 1495 KTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEVITF 1553 KT EEHF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY+T +P FHLDGEV++ Sbjct 1471 KTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSL 1530 Query 1554 DNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSH 1613 D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQFGPTYLDGADVTKIKPH +H Sbjct 1531 DKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNH 1590 Query 1614 EGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNN 1673 EGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNN Sbjct 1591 EGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNN 1650 Query 1674 CYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMS 1733 CYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM+ Sbjct 1651 CYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMT 1710 Query 1734 YLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQA 1793 +L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTLSY+ K GV IPC CG+ A Sbjct 1711 HLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDA 1770 Query 1794 TKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALL 1853 T+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCGHY HIT+KETLY IDGA L Sbjct 1771 TQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHL 1830 Query 1854 TKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPID 1913 TK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+PKLD YYKKDN+Y+TEQPID Sbjct 1831 TKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPID 1890 Query 1914 LVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYK 1973 LVP QP PNASFDNFK C N KFADDLNQ+TG+ KPASREL VTFFPDLNGDVVAIDY+ Sbjct 1891 LVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYR 1950 Query 1974 HYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDA 2033 HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLWSTKPV+TSNSF+VL ED Sbjct 1951 HYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDT 2010 Query 2034 QGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHT 2093 QGMDNLACE +P SEEVVENPTIQK+V+EC+VKTTEVVG++ILKP++ +K+T+E+GH Sbjct 2011 QGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHE 2070 Query 2094 DLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTT 2153 DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVPW I Y KPFL + TT Sbjct 2071 DLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITT 2130 Query 2154 TNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEA 2213 +N R RV NYMPY FTLL QLCTFT+STNSRI+AS+PTTIAKN+VKSV K CL+A Sbjct 2131 SNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDA 2190 Query 2214 SFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNS 2273 NY+KSP FSKL I +W LLLS+CLGSLI TAA GVL+SN G PSYC G RE YLNS Sbjct 2191 GINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNS 2250 Query 2274 TNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYIL 2333 +NVT +C GS PCS+CLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEW LAY+L Sbjct 2251 SNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYML 2310 Query 2334 FTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYV 2393 FT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYY+ Sbjct 2311 FTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYI 2370 Query 2394 WKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCV 2453 WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HNWNC+ Sbjct 2371 WKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCL 2430 Query 2454 NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTY 2513 NCDTFC GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV VKNG++HLYFDKAGQKTY Sbjct 2431 NCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTY 2490 Query 2514 ERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLD 2573 ERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES++KSASVYYSQLMCQPILLLD Sbjct 2491 ERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLD 2550 Query 2574 QALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTF 2633 QALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF Sbjct 2551 QALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTF 2610 Query 2634 ISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACID 2693 +SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLGACID Sbjct 2611 VSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACID 2670 Query 2694 CSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNV 2753 C+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV Sbjct 2671 CNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNV 2730 Query 2754 VTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAID 2813 +TTKI+LKGGKIV+ K ++K TL+ + A + Y++ PVH +S H +++EIIGYKAI Sbjct 2731 ITTKISLKGGKIVSTCFKLMLKATLLCVLAALVCYIVMPVHTLSIHDGYTNEIIGYKAIQ 2790 Query 2814 GGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTI 2873 GVTRDI STD CFANKHA FD WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGLPGT+ Sbjct 2791 DGVTRDIISTDDCFANKHAGFDAWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTV 2850 Query 2874 LRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYC 2933 LR NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPVPYC Sbjct 2851 LRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYC 2910 Query 2934 YDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSE 2993 YDTN+LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCERSE Sbjct 2911 YDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSE 2970 Query 2994 AGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIV 3053 G+C+STSGRWVLNN++YR+L GVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+ Sbjct 2971 VGICLSTSGRWVLNNEHYRALSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGII 3030 Query 3054 AIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLT 3113 AI+VTC AYYFM+FRR FGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYSV YLYLT Sbjct 3031 AILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLT 3090 Query 3114 FYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFS 3173 FY TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KH +WFF+NYL++RV+FNGV+FS Sbjct 3091 FYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFS 3150 Query 3174 TFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCH 3233 TFEEAALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCH Sbjct 3151 TFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCH 3210 Query 3234 LAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGL 3293 LAKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGL Sbjct 3211 LAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGL 3270 Query 3294 WLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLK 3353 WLDD VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LK Sbjct 3271 WLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLK 3330 Query 3354 VDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGF 3413 VDT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGF Sbjct 3331 VDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGF 3390 Query 3414 NIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYA 3473 NIDYDCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYA Sbjct 3391 NIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYA 3450 Query 3474 AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKE 3533 AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKE Sbjct 3451 AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKE 3510 Query 3534 LLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLV 3593 LLQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTSLL+ Sbjct 3511 LLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLI 3570 Query 3594 LVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMV 3653 LVQSTQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMV Sbjct 3571 LVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMV 3630 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMN 3713 YMPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLLILMTARTVYDD ARRVWTLMN Sbjct 3631 YMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMN 3690 Query 3714 VLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITG 3773 V+TLVYKVYYGNALDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITG Sbjct 3691 VITLVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG 3750 Query 3774 NTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKN 3833 NTLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+ Sbjct 3751 NTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKS 3810 Query 3834 SIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQ 3893 SIDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQ Sbjct 3811 SIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQ 3870 Query 3894 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPS 3953 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDIN+LCEEMLDNRATLQAIASEFSSLPS Sbjct 3871 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQAIASEFSSLPS 3930 Query 3954 YAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMY 4013 YAA+ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMY Sbjct 3931 YAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMY 3990 Query 4014 KQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV 4073 KQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV Sbjct 3991 KQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV 4050 Query 4074 IPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRA 4133 +PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNSPNLAWPLIVTALRA Sbjct 4051 VPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRA 4110 Query 4134 NSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKW 4193 NSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKW Sbjct 4111 NSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKW 4170 Query 4194 ARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4253 ARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ Sbjct 4171 ARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4230 Query 4254 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4231 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4290 Query 4314 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 4373 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4291 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4350 Query 4374 GMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 GMWKGYGCSCDQLREP++QSADA +FLNGFAV Sbjct 4351 GMWKGYGCSCDQLREPLMQSADASTFLNGFAV 4382 >sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus Rp3/2004 OX=349344 GN=1a PE=3 SV=1 Length=4380 Score = 7477 bits (19401), Expect = 0.0, Method: Compositional matrix adjust. Identities = 3523/4413 (80%), Positives = 3936/4413 (89%), Gaps = 41/4413 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK GTCG+VE+EKGV Sbjct 1 MESLVLGINEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKSGTCGIVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQ EQPYVFIKRSDA+ HGH + ELVAEL+G+QYGRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQPEQPYVFIKRSDAQGTDHGHRVRELVAELDGVQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SGV REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGVLRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCR+H HEIAW Sbjct 181 ALTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCRDHGHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TCGYL Sbjct 301 RSVYPVATPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + E+GPEHS A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSAADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF+LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFQLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+ +S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPIKGAWNIGQHRSVLTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIFSRTL+ A +S+ LQ+AA+TILD IS+ SLRL+DAM++TS+L TN++++MAY Sbjct 541 AGVIRSIFSRTLDAANHSIPDLQRAAVTILDSISEQSLRLVDAMVYTSNLLTNSVIIMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ TSQWL+N+ T EKL+P+ W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLDTTVEKLRPIFAWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFVDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAVVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVCINGLMLLEIK E+YCAL+P ++ TNN F LKGGAPTK VTFG+DTV+EVQGYK+V Sbjct 781 TPVCINGLMLLEIKANEQYCALSPGLLATNNVFRLKGGAPTKGVTFGEDTVVEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEP--STQYEYGTEDDYQG 957 WS+AT+YLFD+SGE KL+S MYCSFYPPDE+E+ + EEEE + ++EYGTE+DY+G Sbjct 901 WSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYEEEEEVSERTCEHEYGTEEDYKG 960 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 PLEFGA++ +Q EE++EEDWLDD + + Sbjct 961 LPLEFGASTDIIQVEEQEEEDWLDDAVEAEPEPE-------------------------- 994 Query 1018 PVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNK 1077 + VN +GYLKLTDNV IK DIVEEA+ P V+VNAAN++LKHGGGVAGALNK Sbjct 995 -PLHEEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPMVIVNAANIHLKHGGGVAGALNK 1053 Query 1078 ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYEN 1137 ATN AMQ ESD YI NGPL VGGSC+LSGHNLAK CLHVVGPN+N GEDIQLLK+AYEN Sbjct 1054 ATNGAMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYEN 1113 Query 1138 FNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK 1197 FN ++LLAPLLSAGIFGA P+ SL++CV TVRT VY+ V DK LY+++V +L+ K Sbjct 1114 FNSQDILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYIVVNDKVLYEQVVMDYLDSLKPK 1173 Query 1198 QVEQKIAEIPKEEVKP---FITESKPSVEQRKQDDK-KIKACVEEVTTTLEETKFLTENL 1253 E PK+EV P + + SV Q+ D K KIKAC++EVTTTLEETKFLT L Sbjct 1174 ------VEAPKQEVLPKAEYPKVDEKSVVQKTIDVKPKIKACIDEVTTTLEETKFLTNKL 1227 Query 1254 LLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEML 1313 LL+ DING L+ DS ++ D++FL+KDAPY+VGDV+ G +T VVIP+KKAGGTTEML Sbjct 1228 LLFTDINGKLYQDSKNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEML 1287 Query 1314 AKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSW 1373 ++AL+KVP + YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS N K+EILGTVSW Sbjct 1288 SRALKKVPINEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNAKEEILGTVSW 1347 Query 1374 NLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVAS 1433 NLREMLAHAEETRKLMPVC++ +AI++TIQRKYKGIKIQEG+VDYG RF+FYTSK VAS Sbjct 1348 NLREMLAHAEETRKLMPVCMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVAS 1407 Query 1434 LINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSS 1493 +I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK PA VSVSSPDAVT YNGYLTSS Sbjct 1408 IITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAIVSVSSPDAVTTYNGYLTSS 1467 Query 1494 SKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEVIT 1552 SKT E+HF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRG+K VY+T +P FHLDGEV+ Sbjct 1468 SKTSEDHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGEKIVYHTLESPVKFHLDGEVLP 1527 Query 1553 FDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNS 1612 D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQ GPTYL+GADVTKIKPH + Sbjct 1528 LDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQLGPTYLEGADVTKIKPHVN 1587 Query 1613 HEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADN 1672 HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADN Sbjct 1588 HEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADN 1647 Query 1673 NCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETM 1732 NCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM Sbjct 1648 NCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETM 1707 Query 1733 SYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQ 1792 ++L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTLSY+ K GV IPC CG+ Sbjct 1708 THLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKMGVSIPCVCGRD 1767 Query 1793 ATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGAL 1852 AT+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCGHY HIT+KETLY IDGA Sbjct 1768 ATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAH 1827 Query 1853 LTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPI 1912 LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+PKLD YYKKDN+Y+TEQPI Sbjct 1828 LTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPI 1887 Query 1913 DLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDY 1972 DL+P QP PNASFDNFK C N KFADDLNQ+TG+ KPASREL VTFFPDLNGDVVAIDY Sbjct 1888 DLIPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDY 1947 Query 1973 KHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSED 2032 +HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLWSTKPV+TSNSF+VL ED Sbjct 1948 RHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVED 2007 Query 2033 AQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGH 2092 QGMDNLACE +P EEVVENPTIQK+V+EC+VKTTEVVG++ILKP++ +K+T+E+ H Sbjct 2008 TQGMDNLACESQQPTPEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELDH 2067 Query 2093 TDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVST 2152 DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVPW I Y KPFL + T Sbjct 2068 EDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWGKILAYVKPFLGQAAVT 2127 Query 2153 TTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLE 2212 T+N R + R+ NYMPY TLL QLCTFT+STNSRI+AS+PTTIAKN+V+ + + CL+ Sbjct 2128 TSNCAKRLVQRMFNNYMPYVLTLLFQLCTFTKSTNSRIRASLPTTIAKNSVRGIVRLCLD 2187 Query 2213 ASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLN 2272 A NY+KSP FSKL I +W LLLS+CLGSLIY TAALGVL+SN G PSYC+G RE YLN Sbjct 2188 AGINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAALGVLLSNFGAPSYCSGVRESYLN 2247 Query 2273 STNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYI 2332 S+NVT +C GS PCSVCLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEWF AY+ Sbjct 2248 SSNVTTMDFCEGSFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWFFAYM 2307 Query 2333 LFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYY 2392 LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYY Sbjct 2308 LFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYY 2367 Query 2393 VWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNC 2452 +WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HNWNC Sbjct 2368 IWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNC 2427 Query 2453 VNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKT 2512 +NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+VDSV VKNG++HLYFDKAGQKT Sbjct 2428 LNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKT 2487 Query 2513 YERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLL 2572 YERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES+AKSASVYYSQLMCQPILLL Sbjct 2488 YERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLL 2547 Query 2573 DQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLST 2632 DQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLST Sbjct 2548 DQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLST 2607 Query 2633 FISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACI 2692 F+SA+RQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLGACI Sbjct 2608 FVSASRQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACI 2667 Query 2693 DCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVN 2752 DC+ARHINAQVA+SHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVN Sbjct 2668 DCNARHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVN 2727 Query 2753 VVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAI 2812 V+TTKI+LKGGKIV+ W K ++K TL+ + A + Y++ PVH++S H +++EIIGYKAI Sbjct 2728 VITTKISLKGGKIVSTWFKIMLKATLLCVLAALVCYIVMPVHILSVHGGYTNEIIGYKAI 2787 Query 2813 DGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGT 2872 GVTRDI STD CFANKHA FD+WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGLPGT Sbjct 2788 QDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGT 2847 Query 2873 ILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPY 2932 +LR NGDFLHFLPRVFSAVGNICYTPSKLIEY+DF+TSACVLAAECTIFKDA GKPVPY Sbjct 2848 VLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFSTSACVLAAECTIFKDAMGKPVPY 2907 Query 2933 CYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERS 2992 CYDTN+LEGS++Y LRPDTRYVLMDGSIIQFPN YLEGSVRVVTTFD+EYCRHGTCERS Sbjct 2908 CYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNAYLEGSVRVVTTFDAEYCRHGTCERS 2967 Query 2993 EAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGI 3052 EAG+C+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI Sbjct 2968 EAGICLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGI 3027 Query 3053 VAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYL 3112 +AI+VTC AYYFM+FRRAFGEY+HVVA N LFLMSFT+LCL P YSFLPGVYSV YLYL Sbjct 3028 IAILVTCAAYYFMKFRRAFGEYNHVVAANAPLFLMSFTILCLAPAYSFLPGVYSVFYLYL 3087 Query 3113 TFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSF 3172 TFY TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KHF+WFF+NYL++RVVFNGV+F Sbjct 3088 TFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFNNYLRKRVVFNGVTF 3147 Query 3173 STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACC 3232 STFEEAALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACC Sbjct 3148 STFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACC 3207 Query 3233 HLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNG 3292 HLAKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNG Sbjct 3208 HLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNG 3267 Query 3293 LWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKL 3352 LWLDD VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+L Sbjct 3268 LWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRL 3327 Query 3353 KVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVG 3412 KVDT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVG Sbjct 3328 KVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVG 3387 Query 3413 FNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLY 3472 FNIDYDCVSFCYMHHMELPT VHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLY Sbjct 3388 FNIDYDCVSFCYMHHMELPTEVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLY 3447 Query 3473 AAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLK 3532 AAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LK Sbjct 3448 AAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALK 3507 Query 3533 ELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLL 3592 ELLQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ KR +KGTHHW+LLT LTSLL Sbjct 3508 ELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKRIVKGTHHWMLLTFLTSLL 3567 Query 3593 VLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNM 3652 +LVQSTQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNM Sbjct 3568 ILVQSTQWSLFFFVYENAFLPFTLGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNM 3627 Query 3653 VYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLM 3712 VYMPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLL+LMTARTVYDD ARRVWTLM Sbjct 3628 VYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLM 3687 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 NV+TLVYKVYYGNALDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FIT Sbjct 3688 NVITLVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFIT 3747 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 GNTLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK Sbjct 3748 GNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3807 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 +SIDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV Sbjct 3808 SSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3867 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLP 3952 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLP Sbjct 3868 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLP 3927 Query 3953 SYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQM 4012 SYAA+ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDR+AAMQRKLEKMADQAMTQM Sbjct 3928 SYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRNAAMQRKLEKMADQAMTQM 3987 Query 4013 YKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMV 4072 YKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMV Sbjct 3988 YKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMV 4047 Query 4073 VIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR 4132 V+PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+M+NS NLAWPLIVTALR Sbjct 4048 VVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMENSSNLAWPLIVTALR 4107 Query 4133 ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLK 4192 ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLK Sbjct 4108 ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLK 4167 Query 4193 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRL 4252 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYL+FIKGLNNLNRGMVLGSLAATVRL Sbjct 4168 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLHFIKGLNNLNRGMVLGSLAATVRL 4227 Query 4253 QAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP 4312 QAGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP Sbjct 4228 QAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP 4287 Query 4313 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTV 4372 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTV Sbjct 4288 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTV 4347 Query 4373 CGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 CGMWKGYGCSCDQLREPM+QSADA +FLNGFAV Sbjct 4348 CGMWKGYGCSCDQLREPMMQSADASTFLNGFAV 4380 >sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus HKU3 OX=442736 GN=1a PE=3 SV=1 Length=4376 Score = 7475 bits (19396), Expect = 0.0, Method: Compositional matrix adjust. Identities = 3536/4411 (80%), Positives = 3930/4411 (89%), Gaps = 41/4411 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA + HGH +VELVAEL+GIQ+GRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SG REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 TRYVDNNFCGPDGYPLECIKD LARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVFSYVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIG NHTG+ GE E LN++LLEIL +E+VNINIVGDF+ NEE+AIILASF Sbjct 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SAS SAF+ETVKGLDYK+FK IVESCGN+KVT GK GAWNIG+Q+SIL+PL F S+A Sbjct 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIFSRTL+ A +S+ LQ+AA+T LDGIS+ SLRL+DAM++TSDL TN++VVMAY Sbjct 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ T QWL+N+ GT +KLKPV W+E K GVEFLRD WEI+KF+ T +++ Sbjct 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI IKE V+ F +VNK L +C D + I G KL+ALNLGE F+ S+GLYR+C Sbjct 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG+ T + +EEVVLK+G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVCINGLMLLE+++ E+YCAL+P ++ TNN F LKGGAP K VTFG+DTV+EVQGYK+V Sbjct 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLTP+GIDLDE Sbjct 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKP 959 WS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ E E+ E + ++EYGTEDDY+G P Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCE--ECEDEEETCEHEYGTEDDYKGLP 958 Query 960 LEFGATSAALQ-PEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 1018 LEFGA++ EEE+EEDWLDD + + Sbjct 959 LEFGASTETPHVEEEEEEEDWLDDAIEAEPEPE--------------------------- 991 Query 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 + VN F GYLKLTDNV IK DIV+EA+ KPTV+VNAAN +LKHGGGVAGALNKA Sbjct 992 PLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKA 1051 Query 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 1138 TN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLHVVGPN+N GED+QLLK AYENF Sbjct 1052 TNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENF 1111 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 N +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLAV DK+LYD++V +L+ K Sbjct 1112 NSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPK- 1170 Query 1199 VEQKIAEIPKEEVKPFITES---KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL 1255 E P +E +P + E +P E+ KIKAC++EVTTTLEETKFLT LLL Sbjct 1171 -----VESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLL 1225 Query 1256 YIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAK 1315 + DING L+ DS ++ D++FL+KDAPYIVGDV+ G +T V+IP KK+GGTTEMLA+ Sbjct 1226 FADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLAR 1285 Query 1316 ALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNL 1375 AL++VP YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS NEK+E+LGTVSWNL Sbjct 1286 ALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNL 1345 Query 1376 REMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLI 1435 REMLAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QEG+VDYG RF+FYTSK VAS+I Sbjct 1346 REMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASII 1405 Query 1436 NTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSK 1495 LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VSVSSPDAVTAYNGYLTSSSK Sbjct 1406 TKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSK 1465 Query 1496 TPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTS-NPTTFHLDGEVITFD 1554 TPEE+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY+T+ +P FHLDGEV+ D Sbjct 1466 TPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLD 1525 Query 1555 NLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHE 1614 LK+LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQQFGPTYLDGADVTKIKPH +HE Sbjct 1526 KLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHE 1585 Query 1615 GKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNC 1674 GKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNNC Sbjct 1586 GKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNC 1645 Query 1675 YLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSY 1734 YL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM++ Sbjct 1646 YLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTH 1705 Query 1735 LFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQAT 1794 L QHANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMGTLSY++ K GV IPC CG+ AT Sbjct 1706 LLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNAT 1765 Query 1795 KYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLT 1854 +YLVQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQCGHY HIT+KETLY +DGA LT Sbjct 1766 QYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLT 1825 Query 1855 KSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL 1914 K SEYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI+PKLD YYKK N+Y+TEQPIDL Sbjct 1826 KMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL 1885 Query 1915 VPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKH 1974 VP QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL VTFFPDLNGDVVAIDY+H Sbjct 1886 VPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRH 1945 Query 1975 YTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQ 2034 Y+ SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RCLWSTKPV+TSNSF+VL ED Q Sbjct 1946 YSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 2005 Query 2035 GMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTD 2094 GMDNLACE SEEVVENPT+QK+++EC+VKTTEVVG++ILKP+ +K+T+E+GH D Sbjct 2006 GMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHED 2065 Query 2095 LMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 2154 LMAAYV+ +S+TIKKPNELS LGLKTLATHG AA+NSVPW I Y KPFL + T+ Sbjct 2066 LMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITS 2125 Query 2155 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 2214 N + +C+ RV +NYMPY TLL QLCTFT+STNSRIKAS+PTTIAKN+VKSV K CL+ Sbjct 2126 NCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVC 2185 Query 2215 FNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNST 2274 NY+KSP FSKL I++W LLLS+CLGSL Y TA LGV +S+LG+PSYC G RE Y+NS+ Sbjct 2186 INYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSS 2245 Query 2275 NVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILF 2334 NVT +C G PCSVCLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEW LAY+LF Sbjct 2246 NVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLF 2305 Query 2335 TRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVW 2394 T+FFY+LGL+AIMQ FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYYVW Sbjct 2306 TKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVW 2365 Query 2395 KSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVN 2454 KSYVH++DGC SSTCMMCYKRNRATRVECTTIVNGV+RSFYVYANGG+GFCK HNWNC+N Sbjct 2366 KSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLN 2425 Query 2455 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYE 2514 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSVTVKNG++HLYFDKAGQKTYE Sbjct 2426 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYE 2485 Query 2515 RHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQ 2574 RH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES+AKSASVYYSQLMCQPILLLDQ Sbjct 2486 RHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQ 2545 Query 2575 ALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFI 2634 ALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF+ Sbjct 2546 ALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFV 2605 Query 2635 SAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 2694 SAARQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN+MLTYNKVENMTPRDLGACIDC Sbjct 2606 SAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDC 2665 Query 2695 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 2754 +ARHINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV+ Sbjct 2666 NARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVI 2725 Query 2755 TTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDG 2814 TTKI+LKGGK+V+ W K L+KVTL+ + A Y+I PVH +S H +++EIIGYKAI Sbjct 2726 TTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQD 2785 Query 2815 GVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTIL 2874 GVTRDI STD CFANKHA FD+WFSQRGGSY NDK CP++AA+ITRE+GF+VPGLPGT+L Sbjct 2786 GVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVL 2845 Query 2875 RTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCY 2934 R NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPVPYCY Sbjct 2846 RALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCY 2905 Query 2935 DTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEA 2994 DTN+LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCERSE Sbjct 2906 DTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEV 2965 Query 2995 GVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVA 3054 GVC+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+A Sbjct 2966 GVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIA 3025 Query 3055 IVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTF 3114 I+VTC AYYFM+FRRAFGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYS+ YLYLTF Sbjct 3026 ILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTF 3085 Query 3115 YLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFST 3174 Y TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KHF+WFFSNYLK+RV+FNGV+FST Sbjct 3086 YFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFST 3145 Query 3175 FEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHL 3234 FEEAALCTFLLNKEMYL+LRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCHL Sbjct 3146 FEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHL 3205 Query 3235 AKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 AKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW Sbjct 3206 AKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3265 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 LDD VYCPRHV+CT+EDMLNPNY+DLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LKV Sbjct 3266 LDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKV 3325 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 DT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGFN Sbjct 3326 DTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFN 3385 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 IDYDCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAA Sbjct 3386 IDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAA 3445 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKEL Sbjct 3446 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKEL 3505 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 LQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTSLL+L Sbjct 3506 LQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLIL 3565 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVY 3654 VQSTQWSLFFF+YENAFLPFA+GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMVY Sbjct 3566 VQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVY 3625 Query 3655 MPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNV 3714 MPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLLILMTARTVYDD ARRVWTLMNV Sbjct 3626 MPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNV 3685 Query 3715 LTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGN 3774 +TLVYKVYYGN+LDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITGN Sbjct 3686 ITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGN 3745 Query 3775 TLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNS 3834 TLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+S Sbjct 3746 TLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSS 3805 Query 3835 IDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL 3894 IDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL Sbjct 3806 IDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL 3865 Query 3895 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY 3954 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY Sbjct 3866 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY 3925 Query 3955 AAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYK 4014 AA+ATAQEAYEQAV+NGDSEVVLKKLKKSLNVAKSEFD DAAMQRKLEKMADQAMTQMYK Sbjct 3926 AAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYK 3985 Query 4015 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVI 4074 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV+ Sbjct 3986 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVV 4045 Query 4075 PDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN 4134 PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNSPNLAWPLIVTALRAN Sbjct 4046 PDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN 4105 Query 4135 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN KGGRFVLALLSD QDLKWA Sbjct 4106 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWA 4165 Query 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA Sbjct 4166 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4225 Query 4255 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4314 GNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA Sbjct 4226 GNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4285 Query 4315 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCG 4374 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVCG Sbjct 4286 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCG 4345 Query 4375 MWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 MWKGYGCSCDQLREPM+QSADA +FLNGFAV Sbjct 4346 MWKGYGCSCDQLREPMMQSADASTFLNGFAV 4376 >sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 7475 bits (19396), Expect = 0.0, Method: Compositional matrix adjust. Identities = 3540/4408 (80%), Positives = 3938/4408 (89%), Gaps = 37/4408 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA + HGH +VELVAE++GIQYGRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYG DLKS+DLGDELGTDP ED+++NWNTKH SG REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A TRYVDNNFCGPDGYPL+CIKD LARAGK+ CTLSEQLD+I++KRGVYCCR+HEHEIAW Sbjct 181 AVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVASP ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + E+GPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+Q+S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIF+RTL+ A +S+ LQ+AA+TILDGIS+ SLRL+DAM++TSDL TN++++MAY Sbjct 541 AGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ TSQWL+N+ GT EKL+P+ +W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVC+NGLMLLEIKD E+YCAL+P ++ TNN F LKGGAP K VTFG+DTV EVQGYK+V Sbjct 781 TPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQ-YEYGTEDDYQGK 958 WS+AT+YLFD++GE +S MYCSFYPPDE+EE+ EEE T +EYGTEDDYQG Sbjct 901 WSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGL 960 Query 959 PLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 1018 PLEFGA++ ++ EEE+EEDWLDD ++Q+ E+ Sbjct 961 PLEFGASAETVRVEEEEEEDWLDDTTEQS-------------------EI-----EPEPE 996 Query 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 VN F+GYLKLTDNV IK DIV+EA+ P V+VNAAN++LKHGGGVAGALNKA Sbjct 997 PTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKA 1056 Query 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 1138 TN AMQ ESDDYI NGPL VGGSC+LSGHNLAK CLHVVGPN+N GEDIQLLK+AYENF Sbjct 1057 TNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENF 1116 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 N ++LLAPLLSAGIFGA P+ SL+VCV TVRT VY+AV DK LY+++V +L+ + Sbjct 1117 NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPR- 1175 Query 1199 VEQKIAEIPKEEVKPFITESK---PSVEQRKQDDK-KIKACVEEVTTTLEETKFLTENLL 1254 E PK+E P +SK SV Q+ D K KIKAC++EVTTTLEETKFLT LL Sbjct 1176 -----VEAPKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLL 1230 Query 1255 LYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLA 1314 L+ DING L+ DS ++ D++FL+KDAPY+VGDV+ G +T VVIP+KKAGGTTEML+ Sbjct 1231 LFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLS 1290 Query 1315 KALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWN 1374 +AL+KVP D YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS N K+EILGTVSWN Sbjct 1291 RALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWN 1350 Query 1375 LREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASL 1434 LREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIKIQEG+VDYG RF+FYTSK VAS+ Sbjct 1351 LREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASI 1410 Query 1435 INTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSS 1494 I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK PA VSVSSPDAVT YNGYLTSSS Sbjct 1411 ITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSS 1470 Query 1495 KTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEVITF 1553 KT EEHF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY+T +P FHLDGEV++ Sbjct 1471 KTSEEHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSL 1530 Query 1554 DNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSH 1613 D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQFGPTYLDGADVTKIKPH +H Sbjct 1531 DKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNH 1590 Query 1614 EGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNN 1673 EGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNN Sbjct 1591 EGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNN 1650 Query 1674 CYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMS 1733 CYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM+ Sbjct 1651 CYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMT 1710 Query 1734 YLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQA 1793 +L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTLSY+ K GV IPC CG+ A Sbjct 1711 HLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDA 1770 Query 1794 TKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALL 1853 T+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCGHY HIT+KETLY IDGA L Sbjct 1771 TQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHL 1830 Query 1854 TKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPID 1913 TK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+PKLD YYKKDN+Y+TEQPID Sbjct 1831 TKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPID 1890 Query 1914 LVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYK 1973 LVP QP PNASFDNFK C N KFADDLNQ+TG+ KPASREL VTFFPDLNGDVVAIDY+ Sbjct 1891 LVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYR 1950 Query 1974 HYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDA 2033 HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLWSTKPV+TSNSF+VL ED Sbjct 1951 HYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDT 2010 Query 2034 QGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHT 2093 QGMDNLACE +P SEEVVENPTIQK+V+EC+VKTTEVVG++ILKP++ +K+T+E+GH Sbjct 2011 QGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHE 2070 Query 2094 DLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTT 2153 DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVPW I Y KPFL + TT Sbjct 2071 DLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITT 2130 Query 2154 TNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEA 2213 +N R RV NYMPY FTLL QLCTFT+STNSRI+AS+PTTIAKN+VKSV K CL+A Sbjct 2131 SNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDA 2190 Query 2214 SFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNS 2273 NY+KSP FSKL I +W LLLS+CLGSLI TAA GVL+SN G PSYC G RE YLNS Sbjct 2191 GINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNS 2250 Query 2274 TNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYIL 2333 +NVT +C GS PCS+CLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEW LAY+L Sbjct 2251 SNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYML 2310 Query 2334 FTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYV 2393 FT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYY+ Sbjct 2311 FTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYI 2370 Query 2394 WKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCV 2453 WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HNWNC+ Sbjct 2371 WKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCL 2430 Query 2454 NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTY 2513 NCDTFC GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV VKNG++HLYFDKAGQKTY Sbjct 2431 NCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTY 2490 Query 2514 ERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLD 2573 ERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES++KSASVYYSQLMCQPILLLD Sbjct 2491 ERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLD 2550 Query 2574 QALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTF 2633 QALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF Sbjct 2551 QALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTF 2610 Query 2634 ISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACID 2693 +SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLGACID Sbjct 2611 VSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACID 2670 Query 2694 CSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNV 2753 C+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV Sbjct 2671 CNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNV 2730 Query 2754 VTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAID 2813 +TTKI+LKGGKIV+ K ++K TL+ + A + Y++ PVH +S H +++EIIGYKAI Sbjct 2731 ITTKISLKGGKIVSTCFKLMLKATLLCVLAALVCYIVMPVHTLSIHDGYTNEIIGYKAIQ 2790 Query 2814 GGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTI 2873 GVTRDI STD CFANKHA FD WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGLPGT+ Sbjct 2791 DGVTRDIISTDDCFANKHAGFDAWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTV 2850 Query 2874 LRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYC 2933 LR NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPVPYC Sbjct 2851 LRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYC 2910 Query 2934 YDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSE 2993 YDTN+LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCERSE Sbjct 2911 YDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSE 2970 Query 2994 AGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIV 3053 G+C+STSGRWVLNN++YR+L GVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+ Sbjct 2971 VGICLSTSGRWVLNNEHYRALSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGII 3030 Query 3054 AIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLT 3113 AI+VTC AYYFM+FRR FGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYSV YLYLT Sbjct 3031 AILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLT 3090 Query 3114 FYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFS 3173 FY TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KH +WFF+NYL++RV+FNGV+FS Sbjct 3091 FYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFS 3150 Query 3174 TFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCH 3233 TFEEAALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCH Sbjct 3151 TFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCH 3210 Query 3234 LAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGL 3293 LAKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGL Sbjct 3211 LAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGL 3270 Query 3294 WLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLK 3353 WLDD VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LK Sbjct 3271 WLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLK 3330 Query 3354 VDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGF 3413 VDT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGF Sbjct 3331 VDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGF 3390 Query 3414 NIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYA 3473 NIDYDCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYA Sbjct 3391 NIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYA 3450 Query 3474 AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKE 3533 AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKE Sbjct 3451 AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKE 3510 Query 3534 LLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLV 3593 LLQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTSLL+ Sbjct 3511 LLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLI 3570 Query 3594 LVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMV 3653 LVQSTQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMV Sbjct 3571 LVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMV 3630 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMN 3713 YMPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLLILMTARTVYDD ARRVWTLMN Sbjct 3631 YMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMN 3690 Query 3714 VLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITG 3773 V+TLVYKVYYGNALDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITG Sbjct 3691 VITLVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG 3750 Query 3774 NTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKN 3833 NTLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+ Sbjct 3751 NTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKS 3810 Query 3834 SIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQ 3893 SIDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQ Sbjct 3811 SIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQ 3870 Query 3894 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPS 3953 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDIN+LCEEMLDNRATLQAIASEFSSLPS Sbjct 3871 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQAIASEFSSLPS 3930 Query 3954 YAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMY 4013 YAA+ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMY Sbjct 3931 YAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMY 3990 Query 4014 KQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV 4073 KQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV Sbjct 3991 KQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV 4050 Query 4074 IPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRA 4133 +PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNSPNLAWPLIVTALRA Sbjct 4051 VPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRA 4110 Query 4134 NSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKW 4193 NSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKW Sbjct 4111 NSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKW 4170 Query 4194 ARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4253 ARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ Sbjct 4171 ARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4230 Query 4254 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4231 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4290 Query 4314 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 4373 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4291 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4350 Query 4374 GMWKGYGCSCDQLREPMLQSADAQSFLN 4401 GMWKGYGCSCDQLREP++QSADA +FLN Sbjct 4351 GMWKGYGCSCDQLREPLMQSADASTFLN 4378 >sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 279/2005 OX=389167 GN=1a PE=3 SV=1 Length=4388 Score = 7462 bits (19360), Expect = 0.0, Method: Compositional matrix adjust. Identities = 3527/4416 (80%), Positives = 3928/4416 (89%), Gaps = 39/4416 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESL G +EKTHVQLSLPVLQVRDVLVRGFGDSVEE L+EAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA+ HG+ +VELVAEL+GIQYGRSG TLGVLVPHVGE PVAYR Sbjct 61 LPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYG DLKS+DLG ELGTDP ED+++NWNTKH GV REL+RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A+TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 AFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIG +HTG+ G+ E LN++L+EIL +++VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SAST AFV+TVKGLDYK FK IVESCGNFKVT+G+AKKGAWNIG++KSIL+PLY F S+A Sbjct 481 SASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIF+R L+TA +S+ LQ+AAITILDGIS+ SLRLIDAM++TSDL TN+++VMAY Sbjct 541 AGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ +QWL+N+ GT +KLKPV W+E K G+EFLRD WEI+KF+ T +IV Sbjct 601 VTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + +KE V+ F ++NK L +C D +II GAKL+ LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPL+APKE+ F EG++ T +EEVVLK G+L+ LE P ++G Sbjct 721 IRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVC+NGLMLLE+KD E+YCAL+P ++ TNN F+LKGGAP K VTFG+DTV+EVQGYK+V Sbjct 781 TPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 KITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQ--YEYGTEDDYQG 957 WS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ + E+EE P +EYGTEDDY+G Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKG 960 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 PLEFGA++ + QQ +++ + + E Sbjct 961 LPLEFGAST----------------EIQQVDEEEEEDWLEEAIAAKPEPEPL-------- 996 Query 1018 PVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNK 1077 VN F+GYLKLTDNV IK DIV+EA+ KPTV+VNAANV+LKHGGGVAGALNK Sbjct 997 ---PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNK 1053 Query 1078 ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYEN 1137 ATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK C+HVVGPN+N GED+QLLK+AY N Sbjct 1054 ATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYAN 1113 Query 1138 FNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK 1197 FN +VLLAPLLSAGIFGA P+ SL++CV+TVRT VY AV D++LYD +V +L+ K Sbjct 1114 FNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPK 1173 Query 1198 QVE---QKIAEIPKEEVKPFITESKPSVEQ----RKQDDKKIKACVEEVTTTLEETKFLT 1250 VE Q+ E+ ++ +T+ +E+ K D K KA +EEV T+LEETKFLT Sbjct 1174 -VETPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVKFKARIEEVNTSLEETKFLT 1232 Query 1251 ENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTT 1310 LLL+ DING L+ DS ++ D+ FL+KDAPYIVGDV+ G +T V+IP KKAGGTT Sbjct 1233 SRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTT 1292 Query 1311 EMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGT 1370 EMLAKAL+KVP YITTYPGQG GYT+EEAKT L+KCKS FY+LPS N+K+EILGT Sbjct 1293 EMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGT 1352 Query 1371 VSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTT 1430 VSWNLREMLAHAEETRKLM +C++ KA++STI R+YKGIK+QEG+VDYG RF+FYTSK Sbjct 1353 VSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEP 1412 Query 1431 VASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYL 1490 VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VSVSSPDAVT YNGYL Sbjct 1413 VASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYL 1472 Query 1491 TSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGE 1549 TSSSKT EEHFIET+SLAG Y+DWSYSGQ T+LG+EFLKRGDK VY+T +P FHLDGE Sbjct 1473 TSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGE 1532 Query 1550 VITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKP 1609 V+ D LK+LLSLREVRTIKVFTTVDN NLHTQ+VDMSMTYGQQFGPTYLDGADVTKIKP Sbjct 1533 VLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKP 1592 Query 1610 HNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKW 1669 H HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQ+ GLTSIKW Sbjct 1593 HAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKW 1652 Query 1670 ADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVR 1729 ADNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AANFCALILAY N+TVGELGDVR Sbjct 1653 ADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVR 1712 Query 1730 ETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTC 1789 ETM++L QHANL+S KRVLNVVCKTCGQ+ TTL GVEAVMYMGTLSYE+ K GV IPC C Sbjct 1713 ETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCIC 1772 Query 1790 GKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCID 1849 G+ AT+YLVQQES FVMMSAPP++Y L+ G F CA+EYTG+YQCGHY H+T KETLY ID Sbjct 1773 GRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRID 1832 Query 1850 GALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTE 1909 GA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV+ TEI PKLD YYKKDN+Y+TE Sbjct 1833 GAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTE 1892 Query 1910 QPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVA 1969 QPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL VTFFPDLNGDVVA Sbjct 1893 QPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVA 1952 Query 1970 IDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLK 2029 IDY+HY+ SFKKGAKLLHKPI+WH+N TNK TYKPNTWC+RCLWSTKPVETSNSF+VL+ Sbjct 1953 IDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLE 2012 Query 2030 SEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEE 2089 ED QGMDNLACE P SEEVVENPTIQK+V+EC+VKT EVVG++ILKP+ +K+T+E Sbjct 2013 VEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQE 2072 Query 2090 VGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKV 2149 +GH DLMAAYV+ +S+TIKKPNELS LGL+TLATHG AA+NSVPW I Y KPFL + Sbjct 2073 LGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQA 2132 Query 2150 VSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKF 2209 TTTN + RC+ RV NYMPY TLL QLCTFTRSTNSRI+AS+PTTIAKN+VKSV K Sbjct 2133 AVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKL 2192 Query 2210 CLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREG 2269 CL+ NY+KSP FSKL I +W LLLS+CLGSLIY TAA GVL+SNLG+PSYC G RE Sbjct 2193 CLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRES 2252 Query 2270 YLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFL 2329 Y+NS+NVT +C GS CSVCL+GLDSLD+YP+LETIQ+TISS+K DLT+ GL AEWFL Sbjct 2253 YVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFL 2312 Query 2330 AYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFAS 2389 AY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFA Sbjct 2313 AYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAF 2372 Query 2390 FYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHN 2449 YYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HN Sbjct 2373 CYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHN 2432 Query 2450 WNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAG 2509 WNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+VDSV VKNG++HLYFDKAG Sbjct 2433 WNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAG 2492 Query 2510 QKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPI 2569 QKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES+AKSASVYYSQLMCQPI Sbjct 2493 QKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPI 2552 Query 2570 LLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV 2629 LLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD V Sbjct 2553 LLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGV 2612 Query 2630 LSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLG 2689 LSTF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLG Sbjct 2613 LSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLG 2672 Query 2690 ACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQ 2749 ACIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQ Sbjct 2673 ACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQ 2732 Query 2750 VVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGY 2809 VVN +TTKI+LKGGKIV+ W K ++K TL+ + A Y+I PVH +S H +++EIIGY Sbjct 2733 VVNAITTKISLKGGKIVSTWFKLMLKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGY 2792 Query 2810 KAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGL 2869 KAI GVTRDI +TD CFANKHA FD+WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGL Sbjct 2793 KAIQDGVTRDIMATDDCFANKHAGFDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGL 2852 Query 2870 PGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKP 2929 PGT+LR NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKP Sbjct 2853 PGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKP 2912 Query 2930 VPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTC 2989 VPYCYDTN+LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTC Sbjct 2913 VPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTC 2972 Query 2990 ERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVA 3049 ERSEAGVC+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VA Sbjct 2973 ERSEAGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVA 3032 Query 3050 GGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIY 3109 GGI+AI+VTC AYYFM+FRRAFGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYS+ Y Sbjct 3033 GGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFY 3092 Query 3110 LYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNG 3169 LYLTFY TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KH +WFF+NYL++RV+FNG Sbjct 3093 LYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNG 3152 Query 3170 VSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREA 3229 V+FSTFEEAALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREA Sbjct 3153 VTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREA 3212 Query 3230 ACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTT 3289 ACCHLAKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTT Sbjct 3213 ACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTT 3272 Query 3290 LNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCV 3349 LNGLWLDD VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+ Sbjct 3273 LNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCL 3332 Query 3350 LKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCG 3409 L+LKVDT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN+TIKGSFLNGSCG Sbjct 3333 LRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCG 3392 Query 3410 SVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLA 3469 SVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLA Sbjct 3393 SVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLA 3452 Query 3470 WLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA 3529 WLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA Sbjct 3453 WLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA 3512 Query 3530 SLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILT 3589 +LKELLQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LT Sbjct 3513 ALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLT 3572 Query 3590 SLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAY 3649 SLL+LVQSTQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAY Sbjct 3573 SLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAY 3632 Query 3650 FNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVW 3709 FNMVYMPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLL+LMTARTVYDD ARRVW Sbjct 3633 FNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVW 3692 Query 3710 TLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIF 3769 TLMNV+TLVYKVYYGN+LDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ Sbjct 3693 TLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLL 3752 Query 3770 FITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLL 3829 FITGNTLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLL Sbjct 3753 FITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLL 3812 Query 3830 PPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWA 3889 PPK+SIDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWA Sbjct 3813 PPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWA 3872 Query 3890 QCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFS 3949 QCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFS Sbjct 3873 QCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFS 3932 Query 3950 SLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAM 4009 SLPSYAA+ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAM Sbjct 3933 SLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAM 3992 Query 4010 TQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAK 4069 TQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAK Sbjct 3993 TQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAK 4052 Query 4070 LMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVT 4129 LMVV+PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNS NLAWPLIVT Sbjct 4053 LMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVT 4112 Query 4130 ALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQ 4189 ALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD Q Sbjct 4113 ALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQ 4172 Query 4190 DLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAAT 4249 DLKWARFPKSDGTGTIYTELEPPCRFVTDTP+GPKVKYLYFIKGLNNLNRGMVLGSLAAT Sbjct 4173 DLKWARFPKSDGTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAAT 4232 Query 4250 VRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAIT 4309 VRLQAGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAIT Sbjct 4233 VRLQAGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAIT 4292 Query 4310 VTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTV 4369 VTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTV Sbjct 4293 VTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTV 4352 Query 4370 CTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 CTVCG WKGYGCSCDQLREPM+QSADA +FLNGFAV Sbjct 4353 CTVCGTWKGYGCSCDQLREPMMQSADASTFLNGFAV 4388 >sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 7448 bits (19326), Expect = 0.0, Method: Compositional matrix adjust. Identities = 3532/4407 (80%), Positives = 3926/4407 (89%), Gaps = 41/4407 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA + HGH +VELVAEL+GIQ+GRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SG REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 TRYVDNNFCGPDGYPLECIKD LARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVFSYVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIG NHTG+ GE E LN++LLEIL +E+VNINIVGDF+ NEE+AIILASF Sbjct 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SAS SAF+ETVKGLDYK+FK IVESCGN+KVT GK GAWNIG+Q+SIL+PL F S+A Sbjct 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIFSRTL+ A +S+ LQ+AA+T LDGIS+ SLRL+DAM++TSDL TN++VVMAY Sbjct 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ T QWL+N+ GT +KLKPV W+E K GVEFLRD WEI+KF+ T +++ Sbjct 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI IKE V+ F +VNK L +C D + I G KL+ALNLGE F+ S+GLYR+C Sbjct 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG+ T + +EEVVLK+G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVCINGLMLLE+++ E+YCAL+P ++ TNN F LKGGAP K VTFG+DTV+EVQGYK+V Sbjct 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLTP+GIDLDE Sbjct 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKP 959 WS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ E E+ E + ++EYGTEDDY+G P Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCE--ECEDEEETCEHEYGTEDDYKGLP 958 Query 960 LEFGATSAALQ-PEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 1018 LEFGA++ EEE+EEDWLDD + + Sbjct 959 LEFGASTETPHVEEEEEEEDWLDDAIEAEPEPE--------------------------- 991 Query 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 + VN F GYLKLTDNV IK DIV+EA+ KPTV+VNAAN +LKHGGGVAGALNKA Sbjct 992 PLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKA 1051 Query 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 1138 TN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLHVVGPN+N GED+QLLK AYENF Sbjct 1052 TNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENF 1111 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 N +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLAV DK+LYD++V +L+ K Sbjct 1112 NSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPK- 1170 Query 1199 VEQKIAEIPKEEVKPFITES---KPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL 1255 E P +E +P + E +P E+ KIKAC++EVTTTLEETKFLT LLL Sbjct 1171 -----VESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLL 1225 Query 1256 YIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAK 1315 + DING L+ DS ++ D++FL+KDAPYIVGDV+ G +T V+IP KK+GGTTEMLA+ Sbjct 1226 FADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLAR 1285 Query 1316 ALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNL 1375 AL++VP YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS NEK+E+LGTVSWNL Sbjct 1286 ALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNL 1345 Query 1376 REMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLI 1435 REMLAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QEG+VDYG RF+FYTSK VAS+I Sbjct 1346 REMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASII 1405 Query 1436 NTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSK 1495 LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VSVSSPDAVTAYNGYLTSSSK Sbjct 1406 TKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSK 1465 Query 1496 TPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTS-NPTTFHLDGEVITFD 1554 TPEE+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY+T+ +P FHLDGEV+ D Sbjct 1466 TPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLD 1525 Query 1555 NLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHE 1614 LK+LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQQFGPTYLDGADVTKIKPH +HE Sbjct 1526 KLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHE 1585 Query 1615 GKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNC 1674 GKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNNC Sbjct 1586 GKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNC 1645 Query 1675 YLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSY 1734 YL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM++ Sbjct 1646 YLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTH 1705 Query 1735 LFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQAT 1794 L QHANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMGTLSY++ K GV IPC CG+ AT Sbjct 1706 LLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNAT 1765 Query 1795 KYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLT 1854 +YLVQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQCGHY HIT+KETLY +DGA LT Sbjct 1766 QYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLT 1825 Query 1855 KSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL 1914 K SEYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI+PKLD YYKK N+Y+TEQPIDL Sbjct 1826 KMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL 1885 Query 1915 VPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKH 1974 VP QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL VTFFPDLNGDVVAIDY+H Sbjct 1886 VPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRH 1945 Query 1975 YTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQ 2034 Y+ SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RCLWSTKPV+TSNSF+VL ED Q Sbjct 1946 YSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 2005 Query 2035 GMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTD 2094 GMDNLACE SEEVVENPT+QK+++EC+VKTTEVVG++ILKP+ +K+T+E+GH D Sbjct 2006 GMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHED 2065 Query 2095 LMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 2154 LMAAYV+ +S+TIKKPNELS LGLKTLATHG AA+NSVPW I Y KPFL + T+ Sbjct 2066 LMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITS 2125 Query 2155 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 2214 N + +C+ RV +NYMPY TLL QLCTFT+STNSRIKAS+PTTIAKN+VKSV K CL+ Sbjct 2126 NCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVC 2185 Query 2215 FNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNST 2274 NY+KSP FSKL I++W LLLS+CLGSL Y TA LGV +S+LG+PSYC G RE Y+NS+ Sbjct 2186 INYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSS 2245 Query 2275 NVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILF 2334 NVT +C G PCSVCLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEW LAY+LF Sbjct 2246 NVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLF 2305 Query 2335 TRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVW 2394 T+FFY+LGL+AIMQ FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYYVW Sbjct 2306 TKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVW 2365 Query 2395 KSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVN 2454 KSYVH++DGC SSTCMMCYKRNRATRVECTTIVNGV+RSFYVYANGG+GFCK HNWNC+N Sbjct 2366 KSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLN 2425 Query 2455 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYE 2514 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSVTVKNG++HLYFDKAGQKTYE Sbjct 2426 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYE 2485 Query 2515 RHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQ 2574 RH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES+AKSASVYYSQLMCQPILLLDQ Sbjct 2486 RHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQ 2545 Query 2575 ALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFI 2634 ALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF+ Sbjct 2546 ALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFV 2605 Query 2635 SAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 2694 SAARQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN+MLTYNKVENMTPRDLGACIDC Sbjct 2606 SAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDC 2665 Query 2695 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 2754 +ARHINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV+ Sbjct 2666 NARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVI 2725 Query 2755 TTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDG 2814 TTKI+LKGGK+V+ W K L+KVTL+ + A Y+I PVH +S H +++EIIGYKAI Sbjct 2726 TTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQD 2785 Query 2815 GVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTIL 2874 GVTRDI STD CFANKHA FD+WFSQRGGSY NDK CP++AA+ITRE+GF+VPGLPGT+L Sbjct 2786 GVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVL 2845 Query 2875 RTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCY 2934 R NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPVPYCY Sbjct 2846 RALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCY 2905 Query 2935 DTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEA 2994 DTN+LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCERSE Sbjct 2906 DTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEV 2965 Query 2995 GVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVA 3054 GVC+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+A Sbjct 2966 GVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIA 3025 Query 3055 IVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTF 3114 I+VTC AYYFM+FRRAFGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYS+ YLYLTF Sbjct 3026 ILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTF 3085 Query 3115 YLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFST 3174 Y TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KHF+WFFSNYLK+RV+FNGV+FST Sbjct 3086 YFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFST 3145 Query 3175 FEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHL 3234 FEEAALCTFLLNKEMYL+LRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCHL Sbjct 3146 FEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHL 3205 Query 3235 AKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 AKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW Sbjct 3206 AKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3265 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 LDD VYCPRHV+CT+EDMLNPNY+DLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LKV Sbjct 3266 LDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKV 3325 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 DT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGFN Sbjct 3326 DTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFN 3385 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 IDYDCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAA Sbjct 3386 IDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAA 3445 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKEL Sbjct 3446 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKEL 3505 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 LQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTSLL+L Sbjct 3506 LQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLIL 3565 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVY 3654 VQSTQWSLFFF+YENAFLPFA+GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMVY Sbjct 3566 VQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVY 3625 Query 3655 MPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNV 3714 MPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLLILMTARTVYDD ARRVWTLMNV Sbjct 3626 MPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNV 3685 Query 3715 LTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGN 3774 +TLVYKVYYGN+LDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITGN Sbjct 3686 ITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGN 3745 Query 3775 TLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNS 3834 TLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+S Sbjct 3746 TLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSS 3805 Query 3835 IDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL 3894 IDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL Sbjct 3806 IDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL 3865 Query 3895 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY 3954 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY Sbjct 3866 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY 3925 Query 3955 AAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYK 4014 AA+ATAQEAYEQAV+NGDSEVVLKKLKKSLNVAKSEFD DAAMQRKLEKMADQAMTQMYK Sbjct 3926 AAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYK 3985 Query 4015 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVI 4074 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV+ Sbjct 3986 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVV 4045 Query 4075 PDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN 4134 PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNSPNLAWPLIVTALRAN Sbjct 4046 PDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN 4105 Query 4135 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN KGGRFVLALLSD QDLKWA Sbjct 4106 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWA 4165 Query 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA Sbjct 4166 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4225 Query 4255 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4314 GNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA Sbjct 4226 GNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4285 Query 4315 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCG 4374 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVCG Sbjct 4286 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCG 4345 Query 4375 MWKGYGCSCDQLREPMLQSADAQSFLN 4401 MWKGYGCSCDQLREPM+QSADA +FLN Sbjct 4346 MWKGYGCSCDQLREPMMQSADASTFLN 4372 >sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 7448 bits (19324), Expect = 0.0, Method: Compositional matrix adjust. Identities = 3519/4409 (80%), Positives = 3932/4409 (89%), Gaps = 41/4409 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK GTCG+VE+EKGV Sbjct 1 MESLVLGINEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKSGTCGIVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQ EQPYVFIKRSDA+ HGH + ELVAEL+G+QYGRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQPEQPYVFIKRSDAQGTDHGHRVRELVAELDGVQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SGV REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGVLRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCR+H HEIAW Sbjct 181 ALTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCRDHGHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TCGYL Sbjct 301 RSVYPVATPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + E+GPEHS A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSAADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF+LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFQLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+ +S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPIKGAWNIGQHRSVLTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIFSRTL+ A +S+ LQ+AA+TILD IS+ SLRL+DAM++TS+L TN++++MAY Sbjct 541 AGVIRSIFSRTLDAANHSIPDLQRAAVTILDSISEQSLRLVDAMVYTSNLLTNSVIIMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ TSQWL+N+ T EKL+P+ W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLDTTVEKLRPIFAWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFVDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAVVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVCINGLMLLEIK E+YCAL+P ++ TNN F LKGGAPTK VTFG+DTV+EVQGYK+V Sbjct 781 TPVCINGLMLLEIKANEQYCALSPGLLATNNVFRLKGGAPTKGVTFGEDTVVEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEP--STQYEYGTEDDYQG 957 WS+AT+YLFD+SGE KL+S MYCSFYPPDE+E+ + EEEE + ++EYGTE+DY+G Sbjct 901 WSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYEEEEEVSERTCEHEYGTEEDYKG 960 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 PLEFGA++ +Q EE++EEDWLDD + + Sbjct 961 LPLEFGASTDIIQVEEQEEEDWLDDAVEAEPEPE-------------------------- 994 Query 1018 PVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNK 1077 + VN +GYLKLTDNV IK DIVEEA+ P V+VNAAN++LKHGGGVAGALNK Sbjct 995 -PLHEEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPMVIVNAANIHLKHGGGVAGALNK 1053 Query 1078 ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYEN 1137 ATN AMQ ESD YI NGPL VGGSC+LSGHNLAK CLHVVGPN+N GEDIQLLK+AYEN Sbjct 1054 ATNGAMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYEN 1113 Query 1138 FNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK 1197 FN ++LLAPLLSAGIFGA P+ SL++CV TVRT VY+ V DK LY+++V +L+ K Sbjct 1114 FNSQDILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYIVVNDKVLYEQVVMDYLDSLKPK 1173 Query 1198 QVEQKIAEIPKEEVKP---FITESKPSVEQRKQDDK-KIKACVEEVTTTLEETKFLTENL 1253 E PK+EV P + + SV Q+ D K KIKAC++EVTTTLEETKFLT L Sbjct 1174 ------VEAPKQEVLPKAEYPKVDEKSVVQKTIDVKPKIKACIDEVTTTLEETKFLTNKL 1227 Query 1254 LLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEML 1313 LL+ DING L+ DS ++ D++FL+KDAPY+VGDV+ G +T VVIP+KKAGGTTEML Sbjct 1228 LLFTDINGKLYQDSKNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEML 1287 Query 1314 AKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSW 1373 ++AL+KVP + YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS N K+EILGTVSW Sbjct 1288 SRALKKVPINEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNAKEEILGTVSW 1347 Query 1374 NLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVAS 1433 NLREMLAHAEETRKLMPVC++ +AI++TIQRKYKGIKIQEG+VDYG RF+FYTSK VAS Sbjct 1348 NLREMLAHAEETRKLMPVCMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVAS 1407 Query 1434 LINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSS 1493 +I LN LNE LVTMP+GYVTHG NLEEAAR MRSLK PA VSVSSPDAVT YNGYLTSS Sbjct 1408 IITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAIVSVSSPDAVTTYNGYLTSS 1467 Query 1494 SKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEVIT 1552 SKT E+HF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRG+K VY+T +P FHLDGEV+ Sbjct 1468 SKTSEDHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGEKIVYHTLESPVKFHLDGEVLP 1527 Query 1553 FDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNS 1612 D LK+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQ GPTYL+GADVTKIKPH + Sbjct 1528 LDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQLGPTYLEGADVTKIKPHVN 1587 Query 1613 HEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADN 1672 HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADN Sbjct 1588 HEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADN 1647 Query 1673 NCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETM 1732 NCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM Sbjct 1648 NCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETM 1707 Query 1733 SYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQ 1792 ++L QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTLSY+ K GV IPC CG+ Sbjct 1708 THLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKMGVSIPCVCGRD 1767 Query 1793 ATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGAL 1852 AT+YLVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCGHY HIT+KETLY IDGA Sbjct 1768 ATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAH 1827 Query 1853 LTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPI 1912 LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+PKLD YYKKDN+Y+TEQPI Sbjct 1828 LTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPI 1887 Query 1913 DLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDY 1972 DL+P QP PNASFDNFK C N KFADDLNQ+TG+ KPASREL VTFFPDLNGDVVAIDY Sbjct 1888 DLIPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDY 1947 Query 1973 KHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSED 2032 +HY+ SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLWSTKPV+TSNSF+VL ED Sbjct 1948 RHYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVED 2007 Query 2033 AQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGH 2092 QGMDNLACE +P EEVVENPTIQK+V+EC+VKTTEVVG++ILKP++ +K+T+E+ H Sbjct 2008 TQGMDNLACESQQPTPEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELDH 2067 Query 2093 TDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVST 2152 DLMAAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVPW I Y KPFL + T Sbjct 2068 EDLMAAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWGKILAYVKPFLGQAAVT 2127 Query 2153 TTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLE 2212 T+N R + R+ NYMPY TLL QLCTFT+STNSRI+AS+PTTIAKN+V+ + + CL+ Sbjct 2128 TSNCAKRLVQRMFNNYMPYVLTLLFQLCTFTKSTNSRIRASLPTTIAKNSVRGIVRLCLD 2187 Query 2213 ASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLN 2272 A NY+KSP FSKL I +W LLLS+CLGSLIY TAALGVL+SN G PSYC+G RE YLN Sbjct 2188 AGINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAALGVLLSNFGAPSYCSGVRESYLN 2247 Query 2273 STNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYI 2332 S+NVT +C GS PCSVCLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEWF AY+ Sbjct 2248 SSNVTTMDFCEGSFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWFFAYM 2307 Query 2333 LFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYY 2392 LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYY Sbjct 2308 LFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYY 2367 Query 2393 VWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNC 2452 +WKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HNWNC Sbjct 2368 IWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNC 2427 Query 2453 VNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKT 2512 +NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+VDSV VKNG++HLYFDKAGQKT Sbjct 2428 LNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKT 2487 Query 2513 YERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLL 2572 YERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES+AKSASVYYSQLMCQPILLL Sbjct 2488 YERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLL 2547 Query 2573 DQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLST 2632 DQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLST Sbjct 2548 DQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLST 2607 Query 2633 FISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACI 2692 F+SA+RQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLGACI Sbjct 2608 FVSASRQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACI 2667 Query 2693 DCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVN 2752 DC+ARHINAQVA+SHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVN Sbjct 2668 DCNARHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVN 2727 Query 2753 VVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAI 2812 V+TTKI+LKGGKIV+ W K ++K TL+ + A + Y++ PVH++S H +++EIIGYKAI Sbjct 2728 VITTKISLKGGKIVSTWFKIMLKATLLCVLAALVCYIVMPVHILSVHGGYTNEIIGYKAI 2787 Query 2813 DGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGT 2872 GVTRDI STD CFANKHA FD+WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGLPGT Sbjct 2788 QDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGT 2847 Query 2873 ILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPY 2932 +LR NGDFLHFLPRVFSAVGNICYTPSKLIEY+DF+TSACVLAAECTIFKDA GKPVPY Sbjct 2848 VLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFSTSACVLAAECTIFKDAMGKPVPY 2907 Query 2933 CYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERS 2992 CYDTN+LEGS++Y LRPDTRYVLMDGSIIQFPN YLEGSVRVVTTFD+EYCRHGTCERS Sbjct 2908 CYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNAYLEGSVRVVTTFDAEYCRHGTCERS 2967 Query 2993 EAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGI 3052 EAG+C+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI Sbjct 2968 EAGICLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGI 3027 Query 3053 VAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYL 3112 +AI+VTC AYYFM+FRRAFGEY+HVVA N LFLMSFT+LCL P YSFLPGVYSV YLYL Sbjct 3028 IAILVTCAAYYFMKFRRAFGEYNHVVAANAPLFLMSFTILCLAPAYSFLPGVYSVFYLYL 3087 Query 3113 TFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSF 3172 TFY TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KHF+WFF+NYL++RVVFNGV+F Sbjct 3088 TFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFNNYLRKRVVFNGVTF 3147 Query 3173 STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACC 3232 STFEEAALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACC Sbjct 3148 STFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACC 3207 Query 3233 HLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNG 3292 HLAKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNG Sbjct 3208 HLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNG 3267 Query 3293 LWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKL 3352 LWLDD VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+L Sbjct 3268 LWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRL 3327 Query 3353 KVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVG 3412 KVDT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVG Sbjct 3328 KVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVG 3387 Query 3413 FNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLY 3472 FNIDYDCVSFCYMHHMELPT VHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLY Sbjct 3388 FNIDYDCVSFCYMHHMELPTEVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLY 3447 Query 3473 AAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLK 3532 AAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LK Sbjct 3448 AAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALK 3507 Query 3533 ELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLL 3592 ELLQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ KR +KGTHHW+LLT LTSLL Sbjct 3508 ELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKRIVKGTHHWMLLTFLTSLL 3567 Query 3593 VLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNM 3652 +LVQSTQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNM Sbjct 3568 ILVQSTQWSLFFFVYENAFLPFTLGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNM 3627 Query 3653 VYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLM 3712 VYMPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLL+LMTARTVYDD ARRVWTLM Sbjct 3628 VYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLM 3687 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 NV+TLVYKVYYGNALDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FIT Sbjct 3688 NVITLVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFIT 3747 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 GNTLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK Sbjct 3748 GNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3807 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 +SIDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV Sbjct 3808 SSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3867 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLP 3952 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLP Sbjct 3868 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLP 3927 Query 3953 SYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQM 4012 SYAA+ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDR+AAMQRKLEKMADQAMTQM Sbjct 3928 SYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRNAAMQRKLEKMADQAMTQM 3987 Query 4013 YKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMV 4072 YKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMV Sbjct 3988 YKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMV 4047 Query 4073 VIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR 4132 V+PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+M+NS NLAWPLIVTALR Sbjct 4048 VVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMENSSNLAWPLIVTALR 4107 Query 4133 ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLK 4192 ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLK Sbjct 4108 ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLK 4167 Query 4193 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRL 4252 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYL+FIKGLNNLNRGMVLGSLAATVRL Sbjct 4168 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLHFIKGLNNLNRGMVLGSLAATVRL 4227 Query 4253 QAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP 4312 QAGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP Sbjct 4228 QAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP 4287 Query 4313 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTV 4372 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTV Sbjct 4288 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTV 4347 Query 4373 CGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 CGMWKGYGCSCDQLREPM+QSADA +FLN Sbjct 4348 CGMWKGYGCSCDQLREPMMQSADASTFLN 4376 >sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 7444 bits (19315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 3523/4412 (80%), Positives = 3924/4412 (89%), Gaps = 39/4412 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESL G +EKTHVQLSLPVLQVRDVLVRGFGDSVEE L+EAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA+ HG+ +VELVAEL+GIQYGRSG TLGVLVPHVGE PVAYR Sbjct 61 LPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYG DLKS+DLG ELGTDP ED+++NWNTKH GV REL+RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A+TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 AFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIG +HTG+ G+ E LN++L+EIL +++VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SAST AFV+TVKGLDYK FK IVESCGNFKVT+G+AKKGAWNIG++KSIL+PLY F S+A Sbjct 481 SASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIF+R L+TA +S+ LQ+AAITILDGIS+ SLRLIDAM++TSDL TN+++VMAY Sbjct 541 AGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ +QWL+N+ GT +KLKPV W+E K G+EFLRD WEI+KF+ T +IV Sbjct 601 VTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + +KE V+ F ++NK L +C D +II GAKL+ LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPL+APKE+ F EG++ T +EEVVLK G+L+ LE P ++G Sbjct 721 IRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVC+NGLMLLE+KD E+YCAL+P ++ TNN F+LKGGAP K VTFG+DTV+EVQGYK+V Sbjct 781 TPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 KITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQ--YEYGTEDDYQG 957 WS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ + E+EE P +EYGTEDDY+G Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKG 960 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 PLEFGA++ + QQ +++ + + E Sbjct 961 LPLEFGAST----------------EIQQVDEEEEEDWLEEAIAAKPEPEPL-------- 996 Query 1018 PVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNK 1077 VN F+GYLKLTDNV IK DIV+EA+ KPTV+VNAANV+LKHGGGVAGALNK Sbjct 997 ---PEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNK 1053 Query 1078 ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYEN 1137 ATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK C+HVVGPN+N GED+QLLK+AY N Sbjct 1054 ATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYAN 1113 Query 1138 FNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK 1197 FN +VLLAPLLSAGIFGA P+ SL++CV+TVRT VY AV D++LYD +V +L+ K Sbjct 1114 FNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPK 1173 Query 1198 QVE---QKIAEIPKEEVKPFITESKPSVEQ----RKQDDKKIKACVEEVTTTLEETKFLT 1250 VE Q+ E+ ++ +T+ +E+ K D K KA +EEV T+LEETKFLT Sbjct 1174 -VETPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVKFKARIEEVNTSLEETKFLT 1232 Query 1251 ENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTT 1310 LLL+ DING L+ DS ++ D+ FL+KDAPYIVGDV+ G +T V+IP KKAGGTT Sbjct 1233 SRLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTT 1292 Query 1311 EMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGT 1370 EMLAKAL+KVP YITTYPGQG GYT+EEAKT L+KCKS FY+LPS N+K+EILGT Sbjct 1293 EMLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGT 1352 Query 1371 VSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTT 1430 VSWNLREMLAHAEETRKLM +C++ KA++STI R+YKGIK+QEG+VDYG RF+FYTSK Sbjct 1353 VSWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEP 1412 Query 1431 VASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYL 1490 VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VSVSSPDAVT YNGYL Sbjct 1413 VASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYL 1472 Query 1491 TSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGE 1549 TSSSKT EEHFIET+SLAG Y+DWSYSGQ T+LG+EFLKRGDK VY+T +P FHLDGE Sbjct 1473 TSSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGE 1532 Query 1550 VITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKP 1609 V+ D LK+LLSLREVRTIKVFTTVDN NLHTQ+VDMSMTYGQQFGPTYLDGADVTKIKP Sbjct 1533 VLLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKP 1592 Query 1610 HNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKW 1669 H HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQ+ GLTSIKW Sbjct 1593 HAKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKW 1652 Query 1670 ADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVR 1729 ADNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AANFCALILAY N+TVGELGDVR Sbjct 1653 ADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVR 1712 Query 1730 ETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTC 1789 ETM++L QHANL+S KRVLNVVCKTCGQ+ TTL GVEAVMYMGTLSYE+ K GV IPC C Sbjct 1713 ETMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCIC 1772 Query 1790 GKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCID 1849 G+ AT+YLVQQES FVMMSAPP++Y L+ G F CA+EYTG+YQCGHY H+T KETLY ID Sbjct 1773 GRDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRID 1832 Query 1850 GALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTE 1909 GA LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV+ TEI PKLD YYKKDN+Y+TE Sbjct 1833 GAYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTE 1892 Query 1910 QPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVA 1969 QPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL VTFFPDLNGDVVA Sbjct 1893 QPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVA 1952 Query 1970 IDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLK 2029 IDY+HY+ SFKKGAKLLHKPI+WH+N TNK TYKPNTWC+RCLWSTKPVETSNSF+VL+ Sbjct 1953 IDYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLE 2012 Query 2030 SEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEE 2089 ED QGMDNLACE P SEEVVENPTIQK+V+EC+VKT EVVG++ILKP+ +K+T+E Sbjct 2013 VEDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQE 2072 Query 2090 VGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKV 2149 +GH DLMAAYV+ +S+TIKKPNELS LGL+TLATHG AA+NSVPW I Y KPFL + Sbjct 2073 LGHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQA 2132 Query 2150 VSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKF 2209 TTTN + RC+ RV NYMPY TLL QLCTFTRSTNSRI+AS+PTTIAKN+VKSV K Sbjct 2133 AVTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKL 2192 Query 2210 CLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREG 2269 CL+ NY+KSP FSKL I +W LLLS+CLGSLIY TAA GVL+SNLG+PSYC G RE Sbjct 2193 CLDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRES 2252 Query 2270 YLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFL 2329 Y+NS+NVT +C GS CSVCL+GLDSLD+YP+LETIQ+TISS+K DLT+ GL AEWFL Sbjct 2253 YVNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFL 2312 Query 2330 AYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFAS 2389 AY+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFA Sbjct 2313 AYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAF 2372 Query 2390 FYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHN 2449 YYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HN Sbjct 2373 CYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHN 2432 Query 2450 WNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAG 2509 WNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+VDSV VKNG++HLYFDKAG Sbjct 2433 WNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAG 2492 Query 2510 QKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPI 2569 QKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES+AKSASVYYSQLMCQPI Sbjct 2493 QKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPI 2552 Query 2570 LLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV 2629 LLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD V Sbjct 2553 LLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGV 2612 Query 2630 LSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLG 2689 LSTF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLG Sbjct 2613 LSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLG 2672 Query 2690 ACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQ 2749 ACIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQ Sbjct 2673 ACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQ 2732 Query 2750 VVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGY 2809 VVN +TTKI+LKGGKIV+ W K ++K TL+ + A Y+I PVH +S H +++EIIGY Sbjct 2733 VVNAITTKISLKGGKIVSTWFKLMLKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGY 2792 Query 2810 KAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGL 2869 KAI GVTRDI +TD CFANKHA FD+WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGL Sbjct 2793 KAIQDGVTRDIMATDDCFANKHAGFDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGL 2852 Query 2870 PGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKP 2929 PGT+LR NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKP Sbjct 2853 PGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKP 2912 Query 2930 VPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTC 2989 VPYCYDTN+LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTC Sbjct 2913 VPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTC 2972 Query 2990 ERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVA 3049 ERSEAGVC+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VA Sbjct 2973 ERSEAGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVA 3032 Query 3050 GGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIY 3109 GGI+AI+VTC AYYFM+FRRAFGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYS+ Y Sbjct 3033 GGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFY 3092 Query 3110 LYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNG 3169 LYLTFY TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KH +WFF+NYL++RV+FNG Sbjct 3093 LYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNG 3152 Query 3170 VSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREA 3229 V+FSTFEEAALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREA Sbjct 3153 VTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREA 3212 Query 3230 ACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTT 3289 ACCHLAKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTT Sbjct 3213 ACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTT 3272 Query 3290 LNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCV 3349 LNGLWLDD VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+ Sbjct 3273 LNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCL 3332 Query 3350 LKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCG 3409 L+LKVDT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN+TIKGSFLNGSCG Sbjct 3333 LRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCG 3392 Query 3410 SVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLA 3469 SVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLA Sbjct 3393 SVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLA 3452 Query 3470 WLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA 3529 WLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA Sbjct 3453 WLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA 3512 Query 3530 SLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILT 3589 +LKELLQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LT Sbjct 3513 ALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLT 3572 Query 3590 SLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAY 3649 SLL+LVQSTQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAY Sbjct 3573 SLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAY 3632 Query 3650 FNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVW 3709 FNMVYMPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLL+LMTARTVYDD ARRVW Sbjct 3633 FNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVW 3692 Query 3710 TLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIF 3769 TLMNV+TLVYKVYYGN+LDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ Sbjct 3693 TLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLL 3752 Query 3770 FITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLL 3829 FITGNTLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLL Sbjct 3753 FITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLL 3812 Query 3830 PPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWA 3889 PPK+SIDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWA Sbjct 3813 PPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWA 3872 Query 3890 QCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFS 3949 QCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFS Sbjct 3873 QCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFS 3932 Query 3950 SLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAM 4009 SLPSYAA+ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAM Sbjct 3933 SLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAM 3992 Query 4010 TQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAK 4069 TQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAK Sbjct 3993 TQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAK 4052 Query 4070 LMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVT 4129 LMVV+PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNS NLAWPLIVT Sbjct 4053 LMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVT 4112 Query 4130 ALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQ 4189 ALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD Q Sbjct 4113 ALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQ 4172 Query 4190 DLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAAT 4249 DLKWARFPKSDGTGTIYTELEPPCRFVTDTP+GPKVKYLYFIKGLNNLNRGMVLGSLAAT Sbjct 4173 DLKWARFPKSDGTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAAT 4232 Query 4250 VRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAIT 4309 VRLQAGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAIT Sbjct 4233 VRLQAGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAIT 4292 Query 4310 VTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTV 4369 VTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTV Sbjct 4293 VTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTV 4352 Query 4370 CTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 CTVCG WKGYGCSCDQLREPM+QSADA +FLN Sbjct 4353 CTVCGTWKGYGCSCDQLREPMMQSADASTFLN 4384 >sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus HKU9 OX=694006 GN=1a PE=3 SV=1 Length=4248 Score = 2320 bits (6013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1257/3091 (41%), Positives = 1830/3091 (59%), Gaps = 121/3091 (4%) Query 1367 ILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY-GARFYFY 1425 ++ VS + M+ +E L+PV ++ A + ++R +EG+ G FY Y Sbjct 1216 LVDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFSSNGYEFYGY 1271 Query 1426 TSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTA 1485 + + + LN L L+ +P G++ +G L +A MR L VP TV V S +V Sbjct 1272 SRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVVPSESSVPL 1331 Query 1486 YNGYLT---SSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIE----FLKRGDKSVYYT 1538 Y Y S T + F+ I L G+ +DW + + + KRG+ + + Sbjct 1332 YRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDVLQTTCTVDRKVYKTICKRGNTYLCF- 1389 Query 1539 SNPTTFHLDGEVI-TFDNLKTLLSLREVRT------IKVFTTVDNINLHTQVVDMSMTYG 1591 + + + G+V+ F + + E + IKV TTVD IN T +V + +Y Sbjct 1390 DDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLVSTAQSYR 1449 Query 1592 QQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYMSAL 1650 Q G + DG D + P + EG Y N + V A EYY D + + R MS Sbjct 1450 AQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNIIARAMSIR 1509 Query 1651 NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANF 1710 + W Y V+G + D+NCYL A+ LQ I++ F+ P + AY + G Sbjct 1510 KTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVCRAYDALKGGNPLPM 1569 Query 1711 CALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMY 1770 +++A T G D +S + H + + +RV+ VC+ CG Q G +A + Sbjct 1570 AEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCGVSQMVFTGTDACTF 1628 Query 1771 MGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELK-HGTFTCASEYTG 1829 G++ + V + C CG+ A +Y+ +Q+SP+++MS P Q L G + A + G Sbjct 1629 YGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPLDTSGIWKTAIVFRG 1688 Query 1830 NYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVC 1889 GHY + + + D ++S+ K P TD+ Y S+T+ K TY LDGV Sbjct 1689 PVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTSDSKVETYYLDGVKR 1748 Query 1890 TEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFV-CDNIKFADDLNQLTGYK 1948 T IDP Y K+ + YFT PI++V P S+D F C N + A+ N+ Sbjct 1749 TTIDPDFSKYVKRGDYYFTTAPIEVVA-APKLVTSYDGFYLSSCQNPQLAESFNKAINAT 1807 Query 1949 KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTW 2008 K +L +T +P++ GDVVAI + + G+ + KP+++ +PNTW Sbjct 1808 KTGPMKL-LTMYPNVAGDVVAISDDNVV-AHPYGSLHMGKPVLF---------VTRPNTW 1856 Query 2009 C-IRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENP-TIQKDVLECNV 2066 + L ST V T N++DVL D PV+ E E P +++ + + Sbjct 1857 KKLVPLLSTVVVNTPNTYDVLAV------------DPLPVNNETSEEPISVKAPIPLYGL 1904 Query 2067 KTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVDN-SSLTIKKPNELSRVLGLKTLAT 2124 K T V+ P N L +E TDL YV+ + K + LS+VLGL+ + Sbjct 1905 KATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKASHLSKVLGLRV--S 1962 Query 2125 HGLAAVNSVPWDTIANYAKPFLNKVVSTTT--NIVTRCLNRV------------CTNYMP 2170 VN + + YA L V+T+ +VTR + + C + Sbjct 1963 DSSLHVNHLSKGVVYAYAATRLTTRVTTSLLGGLVTRSVRKTADFVRSTNPGSKCVGLLC 2022 Query 2171 YFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSP----NFSKL 2226 F+ L ++ + +K S IA NT V L NYL+S ++S+L Sbjct 2023 LFYQLFMRFWLLVKKP-PIVKVS--GIIAYNTGCGVTTCVL----NYLRSRCGNISWSRL 2075 Query 2227 INII-----IWFLL--LSVCLGSLIYSTAALGVLMSNLGMPSYCTGYRE--GYLNSTNVT 2277 + ++ IWF+ L++C GV +S PS T ++ G + + Sbjct 2076 LKLLRYMLYIWFVWTCLTIC-----------GVWLSEPYAPSLVTRFKYFLGIVMPCDYV 2124 Query 2278 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 2337 + +C++G+DSLD YP+L Q S ++ T ++ E F AY+L+T Sbjct 2125 LVNETGTGWLHHLCMAGMDSLD-YPALRMQQHRYGS-PYNYTYILMLLEAFFAYLLYTPA 2182 Query 2338 FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 2397 ++G+ A++ L Y + + NSWL+ + ++++ P ++M+RMYI A + +K + Sbjct 2183 LPIVGILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGF 2241 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 +HV GCN+ C+MCYK+N A R+EC+T+VNGV+R FYV ANGG FC HNWNCV+CDT Sbjct 2242 LHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDT 2301 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 2517 + STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ++YER Sbjct 2302 YTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYERFP 2361 Query 2518 LSHFVNLDNLRANNTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 2576 + F N+ L + KG+ P NV+VFD ++ EE++ K+A++YY+QL C+PILL+D+ + Sbjct 2362 MDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRM 2421 Query 2577 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 2636 V VGD A +A MF+AY + +++ M+K+K L +TA +++ +++++VL F+ + Sbjct 2422 VGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVFVGS 2481 Query 2637 ARQGFVD--SDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 2694 R D SDV+T D+V C++L HQ E T DS NN + TY K + ++ ++G + Sbjct 2482 TRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQFMTA 2541 Query 2695 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 2754 +A+++NA +AK + LIW DF+ LSE +R+Q++ AA+K L +T ++ + V + Sbjct 2542 NAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKADVPCM 2601 Query 2755 TTKIALKGG-KIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAID 2813 T + GG + + +W + LI V ++ + + ++ TP ++M ++ +K ID Sbjct 2602 VTPFKIIGGHRRIVSWRRVLIHVFMLLVVLNPQWF--TPWYIMRP---IEYNVVDFKVID 2656 Query 2814 GGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTI 2873 V RDI S D CFANK + F+ W+S R GSY N + CP++ V++ VG +VPGLP Sbjct 2657 NAVIRDITSADQCFANKFSAFENWYSNRYGSYVNSRGCPMVVGVVSDIVGSLVPGLPARF 2716 Query 2874 LRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYC 2933 LR L + AVG++CYTP I Y F TSACVLAA CT+F ASG+ +PYC Sbjct 2717 LRVGT-TLLPLVNYGLGAVGSVCYTPHYAINYDVFDTSACVLAATCTLFSSASGERMPYC 2775 Query 2934 YDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCERS 2992 D +++ + Y+ L+P Y + S I+FP + V +V T EYC+ G C+ S Sbjct 2776 ADAALIQNASRYDMLKPHVMYPFYEHSGYIRFPEV-ISAGVHIVRTMAMEYCKVGRCDVS 2834 Query 2993 EAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGI 3052 EAG+C+S RWV+NN Y+R GV+CG A +L NM P+ P+GA+DI+ SI+ G + Sbjct 2835 EAGLCMSLQPRWVVNNAYFRQQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGAL 2894 Query 3053 VAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYL 3112 +A+VV+ YY +RFRRAFG+YS V+ N L F+++ VLCL Y LP +Y++++LY Sbjct 2895 LAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYA 2954 Query 3113 TFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSF 3172 T Y +D++ + H+ +++MF +VP W+T+ YI+ + ++H WF S KR V ++F Sbjct 2955 TCYFGSDIACMMHVSFLIMFAGVVPLWVTVLYIVVVLSRHILWFASLCTKRTVQVGDLAF 3014 Query 3173 STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACC 3232 +F++AAL TF+L+KE++L+L+ ++ Y +YLA+YNKYKY+SG MDT +YREAAC Sbjct 3015 HSFQDAALQTFMLDKEVFLRLKREI--SSDAYFKYLAMYNKYKYYSGPMDTAAYREAACS 3072 Query 3233 HLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNG 3292 HL AL +SN G D +YQPP+ S+ SA LQ+G +MA PSG VE C+V+V G+ TLNG Sbjct 3073 HLVMALEKYSNGGGDTIYQPPRCSVASAALQAGLTRMAHPSGLVEPCLVKVNYGSMTLNG 3132 Query 3293 LWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKL 3352 +WLD+ V CPRHV+C+ +++ NP+Y L +R +N++F V +RVIGH+M+ +LKL Sbjct 3133 IWLDNFVICPRHVMCSRDELANPDYPRLSMRAANYDFHVSQNGHNIRVIGHTMEGSLLKL 3192 Query 3353 KVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVG 3412 VD NPKTP Y F+R+ GQ S+LACY+G P+GVY C +R N T++ SFL GSCGS G Sbjct 3193 TVDVNNPKTPAYSFIRVSTGQAMSLLACYDGLPTGVYTCTLRSNGTMRASFLCGSCGSPG 3252 Query 3413 FNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLY 3472 F ++ V FCY+H +ELP G H GTD G FYGPF D+Q Q A D TITVNVLAWLY Sbjct 3253 FVMNGKEVQFCYLHQLELPNGTHTGTDFSGVFYGPFEDKQVPQLAAPDCTITVNVLAWLY 3312 Query 3473 AAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLK 3532 AAV++G+ WFL + + + +FN A+KY + +T + + +L PL+A+TGI+V M ++LK Sbjct 3313 AAVLSGENWFLTKSSISPAEFNNCAVKYMCQSVTSESLQVLQPLAAKTGISVERMLSALK 3372 Query 3533 ELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLL 3592 LL G GRTI+GS LEDE TP+D+ RQ GV Q + + T W + + ++L Sbjct 3373 VLLSAGFCGRTIMGSCSLEDEHTPYDIGRQMLGVKLQGKFQSMFRWTLQWFAIIFVLTIL 3432 Query 3593 VLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNM 3652 +L+Q QW+ L LP + F + +KHKH +L ++LLP AY+N Sbjct 3433 ILLQLAQWTFVGALPFTLLLPLIGFVAVCVGFVSLLIKHKHTYLTVYLLPVAMVTAYYNF 3492 Query 3653 VYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLM 3712 Y P +++ + V+ D + V L++ R V D R+W + Sbjct 3493 QYTPEGVQGYLLSLYNYVNPGRIDVIGTDLLTMLIISVACTLLSVRMVRTDAYSRIWYVC 3552 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 + +Y + G+A AIS ++SV +NY+GV ++ A+ +V++ P + Sbjct 3553 TAVGWLYNCWTGSADTVAISYLTFMVSVFTNYTGVACASLYAAQFMVWVLKFLDPTILLL 3612 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 +C+++ Y +GY CTCYFG+F L+NR FR TLG Y+Y+VS+QE RYMNS GLLPP Sbjct 3613 YGRFRCVLVCYLLVGYLCTCYFGVFNLINRLFRCTLGNYEYVVSSQELRYMNSHGLLPPT 3672 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS A LNIKL G+GG P +V+T+QS M+D+KCTSVVLLSVLQQLRVESSSKLWA CV Sbjct 3673 NSWQALMLNIKLAGIGGIPIYRVSTIQSNMTDLKCTSVVLLSVLQQLRVESSSKLWALCV 3732 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLP 3952 +LHN+IL + TEAFE VSLLSVLLS+ GA+++++LC +L+N + LQA+ASEFS+L Sbjct 3733 KLHNEILASNSPTEAFEAFVSLLSVLLSLPGAINLDELCSSILENNSVLQAVASEFSNLS 3792 Query 3953 SYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQM 4012 SY + AQ+AY+ AVA G + LKK++NVAKS D+D A RKLE+M++ AMT M Sbjct 3793 SYVDYENAQKAYDTAVATGAPASTVNALKKAMNVAKSVLDKDVATTRKLERMSELAMTAM 3852 Query 4013 YKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMV 4072 YKQAR+ED+R+KVT+AMQTMLF M+R+LD+DAL+NI+NNAR+G VPL +IP T A KL++ Sbjct 3853 YKQARAEDRRSKVTAAMQTMLFNMIRRLDSDALSNILNNARNGVVPLGVIPRTAANKLLL 3912 Query 4073 VIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR 4132 V+PD++ Y T T TYA + W++ QV DAD K V ++I+ +NS NLAWPL+VTA R Sbjct 3913 VVPDFSVYTATITMPTLTYAGSAWDVMQVADADGKTVNATDITRENSVNLAWPLVVTAQR 3972 Query 4133 --ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQD 4190 A S VKLQNNEL P +++M+ AG +QTAC D A+AYYN TK GR V+A+L+D Sbjct 3973 QQATSPVKLQNNELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDG 4031 Query 4191 LKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATV 4250 L +A+ KS G G + ELEPPC+F+ DTPKGP +KYLYF KGL NL RG VLG+LA TV Sbjct 4032 LAFAKVEKSTGDGFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTV 4091 Query 4251 RLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV 4310 RL AG+ATEV +NS++LS C+F+VD YKDYL +GG PI NCVKML HTGTG AIT Sbjct 4092 RLHAGSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITA 4151 Query 4311 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 4370 P+AN+DQESFGGASCCLYCRCHI+HP G C KGK+VQIP NDP+GF ++N VC Sbjct 4152 KPDANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVC 4211 Query 4371 TVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 VC MW+GYGC C LRE LQ+ D + FLN Sbjct 4212 AVCNMWQGYGCPCSSLREINLQARD-ECFLN 4241 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 324/1244 (26%), Positives = 519/1244 (42%), Gaps = 217/1244 (17%) Query 28 VRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV--LPQLEQPYVFIKRSDARTAPHG-HV 84 V G+ +EE L A+Q L+ LV V + P + V I S G Sbjct 29 VTGWDIPIEEALEYAKQQLRTPEPQLVFVPYYLSHAPGISGDRVVITDSIWYATNFGWQP 88 Query 85 MVELVAELEGIQYGRSGETLGVLVPH------VGEIPVAYRKVLLRKNGNKGAGGHSYGA 138 + EL + +G++YGR G T GVL+P +G+I + RK G G +S Sbjct 89 IRELAMDKDGVRYGRGG-THGVLLPMQDPSFIMGDIDIQIRKY--------GIGANSPPD 139 Query 139 DLKSFDLGDELGTD--PYEDFQENW-NTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 L +D + G D PY DF +N TK + ++ G DNN G Sbjct 140 VLPLWDGFSDPGPDVGPYLDFPDNCCPTKPKAKRGGDVYLSDQYG-----FDNN-----G 189 Query 196 YPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPF 255 +E + LL K+ TL + L + G Y R+E Y+L + Sbjct 190 ILVEPVMKLLGVI-KSDFTLEQLLAAL----GKY--------------RTEDGYDLPDGY 230 Query 256 ---EIKLAKK------------FDTFNGECPNFVFPLN--SIIKTIQPRVEKKKLDGFMG 298 IK+ +K P + +P + S+++ +P Sbjct 231 VKVAIKVGRKAVPVLKQSIFTVVGVTEQLVPGYYYPFSTSSVVEHTKPTRGGPVGKTVEA 290 Query 299 RIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTE-NLTKEGATTC 357 + S+Y N N +KC +C W + CG E LT ++C Sbjct 291 VMLSLY---GTNNYNPATPVARLKCSYCDYYGWTPLKDIGTVNCLCGAEFQLT----SSC 343 Query 358 GYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT-IAFGGCVFSYVGC 416 V+K P C + G++ I G RT ++FGG ++S +G Sbjct 344 VDAESAGVIK---PGC----------VMLLDKSPGMRLI--PGNRTYVSFGGAIWSPIGK 388 Query 417 HNKCAYWVPRASANIGCNHTGVVGEG-SEGLNDNLLEILQKEKVNINIVGDFKLNEEIAI 475 N WVPRA + + H+G VG G + +N L+E L + I + D N A Sbjct 389 VNGVTVWVPRAYSIVAGEHSGAVGSGDTVAINKELVEYLIE---GIRVDADTLDNPTCAT 445 Query 476 ILASFSASTSA----FVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILS 531 +A+ T A VE+++GL C K+ G E + Sbjct 446 FIANLDCDTKAPVVHTVESLQGL-----------CLANKIMLGDKP---LPTDEFHPFIV 491 Query 532 PLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLA 591 L A+ + A ++ SRT E ++ VR ++ +Q+ ++ + Sbjct 492 GL-AYHVQRACWYGALASRTFEAFRDFVRTEEER-------FAQFFGKVCAPI------- 536 Query 592 TNNLVVMAYITGGVVQLTSQWLTN------------IFGTVYEKLKPVLDWLEEKFKEGV 639 N V +AY TG V ++ + N + V + LKP+L+W+ +K + Sbjct 537 -NGCVYLAYTTGRVTLFSAYQVLNTAIAKSKDAFGGVAAIVVDMLKPILEWVLKK----M 591 Query 640 EFLRDGW----EIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIII 695 + W E + + +V G+ + + L+ ++ S+ Sbjct 592 SIAKGAWLPYAEGLLALFKAQFTVVKGKFQFLRASLNSKCHSLCDLLTTIMSKLLTSVKW 651 Query 696 GGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLM-PLKAPKEIIFLEGETLPTEVLTE 754 G K+ AL G + KG+ + + GLL+ P + E+ L+G+ LT+ Sbjct 652 AGCKVDALYTGTYYYFSRKGVLTEVQLCAKRLGLLLTPKQQKMEVEVLDGDFDAPVTLTD 711 Query 755 EVVLKTGDLQPLEQPTSEAVEAPLV-GTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTF 813 L+ + + + A + LV GT V + + + +D Y + V F Sbjct 712 ---LELEECTGVLEEVFGASDVKLVKGTLVSLASKLFVRTEDGFLY-RYVKSGGVLGKAF 767 Query 814 TLKGGAPTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFAC 873 L+GG +KVTFGD+ V + +VN ++++ E +D +L++ + + VE GT++ + AC Sbjct 768 RLRGGGVSKVTFGDEEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLAC 827 Query 874 VVADAVIKTLQPV----SELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP--P 927 VV AV + L + L P I+L+++ + +++ + E L MY S P Sbjct 828 VVQKAVYERLSDLFSDCPAELRP--INLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVP 885 Query 928 DEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQT 987 +DE D E+ ++ + ++ WL D Sbjct 886 VDDEMVDDIED-----------------------------TVEQASDSDDQWLGD----- 911 Query 988 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 1047 +G+ED TI +V M TP GY K+ ++VYIK ADIV+ Sbjct 912 ----EGAEDCD----NTIQDVDVATSMT-TP----------CGYTKIAEHVYIKCADIVQ 952 Query 1048 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 1107 EA+ V+VNAANV L HGGGVAGALN+ATNNAMQ ES +YI NG L+ GG +LS Sbjct 953 EARNYSYAVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGHVLLSS 1012 Query 1108 HNLAKH-CLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCV 1166 H LA H LHVVGP+ G+D+ LL + Y + + +L PL+SAGIFG SL V Sbjct 1013 HGLASHGILHVVGPDKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLV 1072 Query 1167 DTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEE 1210 V Y+ V+D+ LY++ +++ ++ + Q + I E Sbjct 1073 KNVACTTYVVVYDRQLYERALATSFDVPGPQSSVQHVPAIDWAE 1116 >sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 2318 bits (6006), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1257/3091 (41%), Positives = 1830/3091 (59%), Gaps = 121/3091 (4%) Query 1367 ILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY-GARFYFY 1425 ++ VS + M+ +E L+PV ++ A + ++R +EG+ G FY Y Sbjct 1216 LVDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFSSNGYEFYGY 1271 Query 1426 TSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTA 1485 + + + LN L L+ +P G++ +G L +A MR L VP TV V S +V Sbjct 1272 SRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVVPSESSVPL 1331 Query 1486 YNGYLT---SSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIE----FLKRGDKSVYYT 1538 Y Y S T + F+ I L G+ +DW + + + KRG+ + + Sbjct 1332 YRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDVLQTTCTVDRKVYKTICKRGNTYLCF- 1389 Query 1539 SNPTTFHLDGEVI-TFDNLKTLLSLREVRT------IKVFTTVDNINLHTQVVDMSMTYG 1591 + + + G+V+ F + + E + IKV TTVD IN T +V + +Y Sbjct 1390 DDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLVSTAQSYR 1449 Query 1592 QQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYMSAL 1650 Q G + DG D + P + EG Y N + V A EYY D + + R MS Sbjct 1450 AQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNIIARAMSIR 1509 Query 1651 NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANF 1710 + W Y V+G + D+NCYL A+ LQ I++ F+ P + AY + G Sbjct 1510 KTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVCRAYDALKGGNPLPM 1569 Query 1711 CALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMY 1770 +++A T G D +S + H + + +RV+ VC+ CG Q G +A + Sbjct 1570 AEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCGVSQMVFTGTDACTF 1628 Query 1771 MGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELK-HGTFTCASEYTG 1829 G++ + V + C CG+ A +Y+ +Q+SP+++MS P Q L G + A + G Sbjct 1629 YGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPLDTSGIWKTAIVFRG 1688 Query 1830 NYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVC 1889 GHY + + + D ++S+ K P TD+ Y S+T+ K TY LDGV Sbjct 1689 PVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTSDSKVETYYLDGVKR 1748 Query 1890 TEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFV-CDNIKFADDLNQLTGYK 1948 T IDP Y K+ + YFT PI++V P S+D F C N + A+ N+ Sbjct 1749 TTIDPDFSKYVKRGDYYFTTAPIEVVA-APKLVTSYDGFYLSSCQNPQLAESFNKAINAT 1807 Query 1949 KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTW 2008 K +L +T +P++ GDVVAI + + G+ + KP+++ +PNTW Sbjct 1808 KTGPMKL-LTMYPNVAGDVVAISDDNVV-AHPYGSLHMGKPVLF---------VTRPNTW 1856 Query 2009 C-IRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENP-TIQKDVLECNV 2066 + L ST V T N++DVL D PV+ E E P +++ + + Sbjct 1857 KKLVPLLSTVVVNTPNTYDVLAV------------DPLPVNNETSEEPISVKAPIPLYGL 1904 Query 2067 KTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVDN-SSLTIKKPNELSRVLGLKTLAT 2124 K T V+ P N L +E TDL YV+ + K + LS+VLGL+ + Sbjct 1905 KATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKASHLSKVLGLRV--S 1962 Query 2125 HGLAAVNSVPWDTIANYAKPFLNKVVSTTT--NIVTRCLNRV------------CTNYMP 2170 VN + + YA L V+T+ +VTR + + C + Sbjct 1963 DSSLHVNHLSKGVVYAYAATRLTTRVTTSLLGGLVTRSVRKTADFVRSTNPGSKCVGLLC 2022 Query 2171 YFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSP----NFSKL 2226 F+ L ++ + +K S IA NT V L NYL+S ++S+L Sbjct 2023 LFYQLFMRFWLLVKKP-PIVKVS--GIIAYNTGCGVTTCVL----NYLRSRCGNISWSRL 2075 Query 2227 INII-----IWFLL--LSVCLGSLIYSTAALGVLMSNLGMPSYCTGYRE--GYLNSTNVT 2277 + ++ IWF+ L++C GV +S PS T ++ G + + Sbjct 2076 LKLLRYMLYIWFVWTCLTIC-----------GVWLSEPYAPSLVTRFKYFLGIVMPCDYV 2124 Query 2278 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 2337 + +C++G+DSLD YP+L Q S ++ T ++ E F AY+L+T Sbjct 2125 LVNETGTGWLHHLCMAGMDSLD-YPALRMQQHRYGS-PYNYTYILMLLEAFFAYLLYTPA 2182 Query 2338 FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 2397 ++G+ A++ L Y + + NSWL+ + ++++ P ++M+RMYI A + +K + Sbjct 2183 LPIVGILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGF 2241 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 +HV GCN+ C+MCYK+N A R+EC+T+VNGV+R FYV ANGG FC HNWNCV+CDT Sbjct 2242 LHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDT 2301 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 2517 + STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ++YER Sbjct 2302 YTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYERFP 2361 Query 2518 LSHFVNLDNLRANNTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 2576 + F N+ L + KG+ P NV+VFD ++ EE++ K+A++YY+QL C+PILL+D+ + Sbjct 2362 MDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRM 2421 Query 2577 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 2636 V VGD A +A MF+AY + +++ M+K+K L +TA +++ +++++VL F+ + Sbjct 2422 VGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVFVGS 2481 Query 2637 ARQGFVD--SDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 2694 R D SDV+T D+V C++L HQ E T DS NN + TY K + ++ ++G + Sbjct 2482 TRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQFMTA 2541 Query 2695 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 2754 +A+++NA +AK + LIW DF+ LSE +R+Q++ AA+K L +T ++ + V + Sbjct 2542 NAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKADVPCM 2601 Query 2755 TTKIALKGG-KIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAID 2813 T + GG + + +W + LI V ++ + + ++ TP ++M ++ +K ID Sbjct 2602 VTPFKIIGGHRRIVSWRRVLIHVFMLLVVLNPQWF--TPWYIMRP---IEYNVVDFKVID 2656 Query 2814 GGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTI 2873 V RDI S D CFANK + F+ W+S R GSY N + CP++ V++ VG +VPGLP Sbjct 2657 NAVIRDITSADQCFANKFSAFENWYSNRYGSYVNSRGCPMVVGVVSDIVGSLVPGLPARF 2716 Query 2874 LRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYC 2933 LR L + AVG++CYTP I Y F TSACVLAA CT+F ASG+ +PYC Sbjct 2717 LRVGT-TLLPLVNYGLGAVGSVCYTPHYAINYDVFDTSACVLAATCTLFSSASGERMPYC 2775 Query 2934 YDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCERS 2992 D +++ + Y+ L+P Y + S I+FP + V +V T EYC+ G C+ S Sbjct 2776 ADAALIQNASRYDMLKPHVMYPFYEHSGYIRFPEV-ISAGVHIVRTMAMEYCKVGRCDVS 2834 Query 2993 EAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGI 3052 EAG+C+S RWV+NN Y+R GV+CG A +L NM P+ P+GA+DI+ SI+ G + Sbjct 2835 EAGLCMSLQPRWVVNNAYFRQQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGAL 2894 Query 3053 VAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYL 3112 +A+VV+ YY +RFRRAFG+YS V+ N L F+++ VLCL Y LP +Y++++LY Sbjct 2895 LAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYA 2954 Query 3113 TFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSF 3172 T Y +D++ + H+ +++MF +VP W+T+ YI+ + ++H WF S KR V ++F Sbjct 2955 TCYFGSDIACMMHVSFLIMFAGVVPLWVTVLYIVVVLSRHILWFASLCTKRTVQVGDLAF 3014 Query 3173 STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACC 3232 +F++AAL TF+L+KE++L+L+ ++ Y +YLA+YNKYKY+SG MDT +YREAAC Sbjct 3015 HSFQDAALQTFMLDKEVFLRLKREI--SSDAYFKYLAMYNKYKYYSGPMDTAAYREAACS 3072 Query 3233 HLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNG 3292 HL AL +SN G D +YQPP+ S+ SA LQ+G +MA PSG VE C+V+V G+ TLNG Sbjct 3073 HLVMALEKYSNGGGDTIYQPPRCSVASAALQAGLTRMAHPSGLVEPCLVKVNYGSMTLNG 3132 Query 3293 LWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKL 3352 +WLD+ V CPRHV+C+ +++ NP+Y L +R +N++F V +RVIGH+M+ +LKL Sbjct 3133 IWLDNFVICPRHVMCSRDELANPDYPRLSMRAANYDFHVSQNGHNIRVIGHTMEGSLLKL 3192 Query 3353 KVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVG 3412 VD NPKTP Y F+R+ GQ S+LACY+G P+GVY C +R N T++ SFL GSCGS G Sbjct 3193 TVDVNNPKTPAYSFIRVSTGQAMSLLACYDGLPTGVYTCTLRSNGTMRASFLCGSCGSPG 3252 Query 3413 FNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLY 3472 F ++ V FCY+H +ELP G H GTD G FYGPF D+Q Q A D TITVNVLAWLY Sbjct 3253 FVMNGKEVQFCYLHQLELPNGTHTGTDFSGVFYGPFEDKQVPQLAAPDCTITVNVLAWLY 3312 Query 3473 AAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLK 3532 AAV++G+ WFL + + + +FN A+KY + +T + + +L PL+A+TGI+V M ++LK Sbjct 3313 AAVLSGENWFLTKSSISPAEFNNCAVKYMCQSVTSESLQVLQPLAAKTGISVERMLSALK 3372 Query 3533 ELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLL 3592 LL G GRTI+GS LEDE TP+D+ RQ GV Q + + T W + + ++L Sbjct 3373 VLLSAGFCGRTIMGSCSLEDEHTPYDIGRQMLGVKLQGKFQSMFRWTLQWFAIIFVLTIL 3432 Query 3593 VLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNM 3652 +L+Q QW+ L LP + F + +KHKH +L ++LLP AY+N Sbjct 3433 ILLQLAQWTFVGALPFTLLLPLIGFVAVCVGFVSLLIKHKHTYLTVYLLPVAMVTAYYNF 3492 Query 3653 VYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLM 3712 Y P +++ + V+ D + V L++ R V D R+W + Sbjct 3493 QYTPEGVQGYLLSLYNYVNPGRIDVIGTDLLTMLIISVACTLLSVRMVRTDAYSRIWYVC 3552 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 + +Y + G+A AIS ++SV +NY+GV ++ A+ +V++ P + Sbjct 3553 TAVGWLYNCWTGSADTVAISYLTFMVSVFTNYTGVACASLYAAQFMVWVLKFLDPTILLL 3612 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 +C+++ Y +GY CTCYFG+F L+NR FR TLG Y+Y+VS+QE RYMNS GLLPP Sbjct 3613 YGRFRCVLVCYLLVGYLCTCYFGVFNLINRLFRCTLGNYEYVVSSQELRYMNSHGLLPPT 3672 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS A LNIKL G+GG P +V+T+QS M+D+KCTSVVLLSVLQQLRVESSSKLWA CV Sbjct 3673 NSWQALMLNIKLAGIGGIPIYRVSTIQSNMTDLKCTSVVLLSVLQQLRVESSSKLWALCV 3732 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLP 3952 +LHN+IL + TEAFE VSLLSVLLS+ GA+++++LC +L+N + LQA+ASEFS+L Sbjct 3733 KLHNEILASNSPTEAFEAFVSLLSVLLSLPGAINLDELCSSILENNSVLQAVASEFSNLS 3792 Query 3953 SYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQM 4012 SY + AQ+AY+ AVA G + LKK++NVAKS D+D A RKLE+M++ AMT M Sbjct 3793 SYVDYENAQKAYDTAVATGAPASTVNALKKAMNVAKSVLDKDVATTRKLERMSELAMTAM 3852 Query 4013 YKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMV 4072 YKQAR+ED+R+KVT+AMQTMLF M+R+LD+DAL+NI+NNAR+G VPL +IP T A KL++ Sbjct 3853 YKQARAEDRRSKVTAAMQTMLFNMIRRLDSDALSNILNNARNGVVPLGVIPRTAANKLLL 3912 Query 4073 VIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR 4132 V+PD++ Y T T TYA + W++ QV DAD K V ++I+ +NS NLAWPL+VTA R Sbjct 3913 VVPDFSVYTATITMPTLTYAGSAWDVMQVADADGKTVNATDITRENSVNLAWPLVVTAQR 3972 Query 4133 --ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQD 4190 A S VKLQNNEL P +++M+ AG +QTAC D A+AYYN TK GR V+A+L+D Sbjct 3973 QQATSPVKLQNNELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDG 4031 Query 4191 LKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATV 4250 L +A+ KS G G + ELEPPC+F+ DTPKGP +KYLYF KGL NL RG VLG+LA TV Sbjct 4032 LAFAKVEKSTGDGFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTV 4091 Query 4251 RLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV 4310 RL AG+ATEV +NS++LS C+F+VD YKDYL +GG PI NCVKML HTGTG AIT Sbjct 4092 RLHAGSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITA 4151 Query 4311 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 4370 P+AN+DQESFGGASCCLYCRCHI+HP G C KGK+VQIP NDP+GF ++N VC Sbjct 4152 KPDANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVC 4211 Query 4371 TVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 VC MW+GYGC C LRE LQ+ D + FLN Sbjct 4212 AVCNMWQGYGCPCSSLREINLQARD-ECFLN 4241 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 326/1244 (26%), Positives = 519/1244 (42%), Gaps = 217/1244 (17%) Query 28 VRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV--LPQLEQPYVFIKRSDARTAPHG-HV 84 V G+ +EE L A+Q L+ LV V + P + V I S G Sbjct 29 VTGWDIPIEEALEYAKQQLRTPEPQLVFVPYYLSHAPGISGDRVVITDSIWYATNFGWQP 88 Query 85 MVELVAELEGIQYGRSGETLGVLVPH------VGEIPVAYRKVLLRKNGNKGAGGHSYGA 138 + EL + +G++YGR G T GVL+P +G+I + RK G G +S Sbjct 89 IRELAMDKDGVRYGRGG-THGVLLPMQDPSFIMGDIDIQIRKY--------GIGANSPPD 139 Query 139 DLKSFDLGDELGTD--PYEDFQENW-NTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 L +D + G D PY DF +N TK + ++ G DNN G Sbjct 140 VLPLWDGFSDPGPDVGPYLDFPDNCCPTKPKAKRGGDVYLSDQYG-----FDNN-----G 189 Query 196 YPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPF 255 +E + LL K+ TL + L + G Y R+E Y+L + Sbjct 190 ILVEPVMKLLGVI-KSDFTLEQLLAAL----GKY--------------RTEDGYDLPDGY 230 Query 256 ---EIKLAKK------------FDTFNGECPNFVFPLN--SIIKTIQPRVEKKKLDGFMG 298 IK+ +K P + +P + S+++ +P Sbjct 231 VKVAIKVGRKAVPVLKQSIFTVVGVTEQLVPGYYYPFSTSSVVEHTKPTRGGPVGKTVEA 290 Query 299 RIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTE-NLTKEGATTC 357 + S+Y N N +KC +C W + CG E LT ++C Sbjct 291 VMLSLY---GTNNYNPATPVARLKCSYCDYYGWTPLKDIGTVNCLCGAEFQLT----SSC 343 Query 358 GYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT-IAFGGCVFSYVGC 416 V+K P C + G++ I G RT ++FGG ++S +G Sbjct 344 VDAESAGVIK---PGC----------VMLLDKSPGMRLI--PGNRTYVSFGGAIWSPIGK 388 Query 417 HNKCAYWVPRASANIGCNHTGVVGEGSE-GLNDNLLEILQKEKVNINIVGDFKLNEEIAI 475 N WVPRA + + H+G VG G +N L+E L + I + D N A Sbjct 389 VNGVTVWVPRAYSIVAGEHSGAVGSGDTVAINKELVEYLIE---GIRVDADTLDNPTCAT 445 Query 476 ILASFSASTSA----FVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILS 531 +A+ T A VE+++GL C K+ G E + Sbjct 446 FIANLDCDTKAPVVHTVESLQGL-----------CLANKIMLGDKP---LPTDEFHPFIV 491 Query 532 PLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLA 591 L A+ + A ++ SRT E ++ VR ++ +Q+ ++ + Sbjct 492 GL-AYHVQRACWYGALASRTFEAFRDFVRTEEER-------FAQFFGKVCAPI------- 536 Query 592 TNNLVVMAYITGGVVQLTSQWLTNI--------FG----TVYEKLKPVLDWLEEKFKEGV 639 N V +AY TG V ++ + N FG V + LKP+L+W+ +K + Sbjct 537 -NGCVYLAYTTGRVTLFSAYQVLNTAIAKSKDAFGGVAAIVVDMLKPILEWVLKK----M 591 Query 640 EFLRDGW----EIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIII 695 + W E + + +V G+ + + L+ ++ S+ Sbjct 592 SIAKGAWLPYAEGLLALFKAQFTVVKGKFQFLRASLNSKCHSLCDLLTTIMSKLLTSVKW 651 Query 696 GGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLM-PLKAPKEIIFLEGETLPTEVLTE 754 G K+ AL G + KG+ + + GLL+ P + E+ L+G+ LT+ Sbjct 652 AGCKVDALYTGTYYYFSRKGVLTEVQLCAKRLGLLLTPKQQKMEVEVLDGDFDAPVTLTD 711 Query 755 EVVLKTGDLQPLEQPTSEAVEAPLV-GTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTF 813 L+ + + + A + LV GT V + + + +D Y + V F Sbjct 712 ---LELEECTGVLEEVFGASDVKLVKGTLVSLASKLFVRTEDGFLY-RYVKSGGVLGKAF 767 Query 814 TLKGGAPTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFAC 873 L+GG +KVTFGD+ V + +VN ++++ E +D +L++ + + VE GT++ + AC Sbjct 768 RLRGGGVSKVTFGDEEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLAC 827 Query 874 VVADAVIKTLQPV----SELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP--P 927 VV AV + L + L P I+L+++ + +++ + E L MY S P Sbjct 828 VVQKAVYERLSDLFSDCPAELRP--INLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVP 885 Query 928 DEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQT 987 +DE D E+ ++ + ++ WL D Sbjct 886 VDDEMVDDIED-----------------------------TVEQASDSDDQWLGD----- 911 Query 988 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 1047 +G+ED TI +V M TP GY K+ ++VYIK ADIV+ Sbjct 912 ----EGAEDCD----NTIQDVDVATSMT-TP----------CGYTKIAEHVYIKCADIVQ 952 Query 1048 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 1107 EA+ V+VNAANV L HGGGVAGALN+ATNNAMQ ES +YI NG L+ GG +LS Sbjct 953 EARNYSYAVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGHVLLSS 1012 Query 1108 HNLAKH-CLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCV 1166 H LA H LHVVGP+ G+D+ LL + Y + + +L PL+SAGIFG SL V Sbjct 1013 HGLASHGILHVVGPDKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLV 1072 Query 1167 DTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEE 1210 V Y+ V+D+ LY++ +++ ++ + Q + I E Sbjct 1073 KNVACTTYVVVYDRQLYERALATSFDVPGPQSSVQHVPAIDWAE 1116 >sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=1a PE=1 SV=1 Length=4391 Score = 2196 bits (5690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1249/3279 (38%), Positives = 1856/3279 (57%), Gaps = 185/3279 (6%) Query 1259 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 1312 I G ++ S V ++ P VGD V+ +G A VV P +A + Sbjct 1156 IAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSL 1215 Query 1313 LAK---ALRKVPTDNYITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIIS 1361 L+K A+ P +T G+ G Y + EAKT + ++ + S+ Sbjct 1216 LSKCYKAMNAYPL--VVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI 1273 Query 1362 NEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGAR 1421 + + L LR + A++ + VC + A ++ K + VD G + Sbjct 1274 VDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-GVQ 1332 Query 1422 FYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPD 1481 +Y YTSK T+ ++ N + +++MPLGYV+HGL+L +A +R + VP +++ + Sbjct 1333 YYCYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKE 1391 Query 1482 AVTAYNGYLTSSSK--TPEEHFIETISLAGSYKDWSYSG-----QSTQLGIEFLKRGDKS 1534 L S P E FI+ + G Y W Q +L + L D++ Sbjct 1392 Q----EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLN-KLLHWSDQT 1446 Query 1535 VYYTSNPTTFHLDGEVITFDNLKTLLSLREVRT-----IKVFTTVDNINLHTQVVDMSMT 1589 + Y + + F+ L + + RT I+V TVD +N T V++ T Sbjct 1447 ICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKNT 1506 Query 1590 YGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYMS 1648 Y Q G + +GAD++ P G + Y+ N +A E Y DP+FL R+ S Sbjct 1507 YRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFYS 1566 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEA 1707 KWK + + S+K +DNNCYL ++TL + ++KF PALQ A+ + + G++ Sbjct 1567 LKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDS 1626 Query 1708 ANFCALILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVE 1766 +F ALI+AY N T G D + + A L S + V C CG + L+G++ Sbjct 1627 TDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLK 1686 Query 1767 AVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGT---FTC 1823 A Y+G + E + + C CG + + +V+ +P++++S P + + T F Sbjct 1687 ACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFVA 1746 Query 1824 ASEYTG-NYQCGHYKHITSKETLYC-IDGALLTKSSEYKGPITDVFYKENSYTTTIKPVT 1881 + + G GHY H K L D ++K+S++K +TDV + Y++ V Sbjct 1747 FNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVVR 1806 Query 1882 YKLDGVVCTEIDPKLDNYYKKDNSYFT-EQPIDLVPNQPYPNASFDNFKFVCDNIKFADD 1940 Y LDG TE+DP L +Y KD YFT E P+ P + + N V + + D Sbjct 1807 YSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGGD 1866 Query 1941 -----LNQLTGY--KKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWH 1993 N L G+ KP +++ +F P +GDV+ ++ Y P +K GA KPI+W Sbjct 1867 AISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILW- 1925 Query 1994 VNNATNKATY-----KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVS 2048 NKA+Y K N +R ++ P+E N F L E PV Sbjct 1926 ----VNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVEST------------PVE 1969 Query 2049 EEVVENPTIQKD--VLECNVKTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVD-NSS 2104 V+ +Q++ +++C V D + A++S + E + DL YVD Sbjct 1970 PPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQ 2029 Query 2105 LTIKKPNELSRVLGLKTLATHGL---AAVNSVPWDTIANYAKPFLNK----VVSTTTNIV 2157 + + K N LS +L L T+ + + AA S+ + F K T T V Sbjct 2030 VIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAV 2089 Query 2158 TRCLNRV-------------CTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTT---IAKN 2201 C+ V C +++ F L L + ++ + +K S T + N Sbjct 2090 GSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGN 2149 Query 2202 TVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSN----- 2256 VK ++ S + L+ ++ + +++ V L S+ + VL S+ Sbjct 2150 VVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFED 2209 Query 2257 --------------LGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTY 2301 LG+ S C G Y + + + T+C S C+ CL DS+ Y Sbjct 2210 AQGLKKFYKEVRAYLGISSACDGLASAY-RANSFDVPTFCANRSAMCNWCLISQDSITHY 2268 Query 2302 PSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISN 2361 P+L+ +Q +S + ++ E LAY+L+T F L LA + FF+ ++ Sbjct 2269 PALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWR 2328 Query 2362 SW------LMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKR 2415 S+ WL ++ P++ +VRMY A + + K Y HV++GC + C++CYKR Sbjct 2329 SYNYAVSSAFWLFTHI----PMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKR 2384 Query 2416 NRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSL 2475 NR TRVE +T+V G +R+FY+ ANGG FC+ HNWNCV+CDT G+TFI +EVA DL+ Sbjct 2385 NRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTT 2444 Query 2476 QFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLR----ANN 2531 +RPIN TD+S Y VDSVTVK + + + GQ YER L F NLD L+ Sbjct 2445 ALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKT 2504 Query 2532 TKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMF 2591 T G N I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ VGDS+E+A KMF Sbjct 2505 TTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMF 2564 Query 2592 DAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKD 2650 D++VN+F S +NV +KL+ L++TA + + + +VL+TFI AAR V+SDVET + Sbjct 2565 DSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNE 2624 Query 2651 VVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIA 2710 +V+ ++ +H+ DI++T +S NNY+ +Y K ++++ DLG+ IDC+A +N V ++ N A Sbjct 2625 IVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGA 2684 Query 2711 LIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNN-- 2768 IWN +M LS+ L++QIR A +K NL F+LT + R N+++ + KIV Sbjct 2685 CIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVR--FTANKIVGGAP 2742 Query 2769 -W--------LKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRD 2819 W LK + T++ A + YL P M + I+ +K +D G+ RD Sbjct 2743 TWFNALRDFTLKGYVLATIIVFLCAVLMYLCLPTFSMVPVEFYEDRILDFKVLDNGIIRD 2802 Query 2820 IASTDTCFANKHADFDTWFSQR-GGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTN 2878 + D CFANKH F W+ + GG Y N CPL AVI G +P +P T L N Sbjct 2803 VNPDDKCFANKHRSFTQWYHEHVGGVYDNSITCPLTVAVIAGVAGARIPDVP-TTLAWVN 2861 Query 2879 GDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNV 2938 + F+ RVF+ G++CYTP I Y F+ S C+L +ECT+F+DA G+ PYC+D V Sbjct 2862 NQIIFFVSRVFANTGSVCYTPIDEIPYKSFSDSGCILPSECTMFRDAEGRMTPYCHDPTV 2921 Query 2939 LEGSVAYESLRPDTRYVLMDGSI-IQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVC 2997 L G+ AY +RP RY L DG++ I+FP E ++R+ T ++YCR G+CE ++ GVC Sbjct 2922 LPGAFAYSQMRPHVRYDLYDGNMFIKFPEVVFESTLRITRTLSTQYCRFGSCEYAQEGVC 2981 Query 2998 VSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVV 3057 ++T+G W + ND++ + PGV+CG D ++++ + L QPI ++ S+V G + + Sbjct 2982 ITTNGSWAIFNDHHLNRPGVYCGSDFIDIVRRLAVSLFQPITYFQLTTSLVLGIGLCAFL 3041 Query 3058 TCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLT 3117 T L YY + +RAF +Y+ + +++ +C Y+ +Y Y TFY T Sbjct 3042 TLLFYYINKVKRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVPYTALYYYATFYFT 3101 Query 3118 NDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV-VF-NGVSFSTF 3175 N+ +F+ H+ W +MF P+VP W+T Y + + +HF+W + + K+ V VF +G +F Sbjct 3102 NEPAFIMHVSWYIMFGPIVPIWMTCVYTVAMCFRHFFWVLAYFSKKHVEVFTDGKLNCSF 3161 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 ++AA F++NK+ Y LR+ L Y+R+L L+NKYKYFSGAM+T +YREAA CHLA Sbjct 3162 QDAASNIFVINKDTYAALRNS--LTNDAYSRFLGLFNKYKYFSGAMETAAYREAAACHLA 3219 Query 3236 KALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWL 3295 KAL +S +GSD+LYQPP SITS VLQSG KM+ PSG VE CMVQVTCG+ TLNGLWL Sbjct 3220 KALQTYSETGSDLLYQPPNCSITSGVLQSGLVKMSHPSGDVEACMVQVTCGSMTLNGLWL 3279 Query 3296 DDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKL 3352 D+ V+CPRHV+C ++ + +PNY+ LLI +NH+F VQ LRV+GH+MQ +LKL Sbjct 3280 DNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIGAPANLRVVGHAMQGTLLKL 3339 Query 3353 KVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVG 3412 VD ANP TP Y F ++PG FSVLACYNG P+G + MRPN+TIKGSFL GSCGSVG Sbjct 3340 TVDVANPSTPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVG 3399 Query 3413 FNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLY 3472 + + ++FCYMH MEL G H G+ +G YG F+D+Q Q TD +VNV+AWLY Sbjct 3400 YTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLY 3459 Query 3473 AAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCASL 3531 AA++NG WF+ T++ FN A+ + E + VD+L + +TG+A+ + ++ Sbjct 3460 AAILNGCAWFVKPNRTSVVSFNEWALANQFTEFVGTQSVDML---AVKTGVAIEQLLYAI 3516 Query 3532 KELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSL 3591 ++L G G+ ILGS +LEDEFTP DV Q GV QS V++ GT HWL T++++ Sbjct 3517 QQLY-TGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQSGVRKVTYGTAHWLFATLVSTY 3575 Query 3592 LVLVQSTQWSLFFFLYENAFLP---FAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVA 3648 ++++Q+T+++L+ +L+E +P F + + M AF M+ VKHKH FL LFLLP + Sbjct 3576 VIILQATKFTLWNYLFET--IPTQLFPLLFVTM-AFVMLLVKHKHTFLTLFLLPVAICLT 3632 Query 3649 YFNMVYMP----ASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDG 3704 Y N+VY P +S ++ + WL + + D +Y S ++L+++ R Sbjct 3633 YANIVYEPTTPISSALIAVANWLAPTNAYMRTTH-TDIGVYISMSLVLVIVVKRLYNPSL 3691 Query 3705 ARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVE 3764 + L + + +Y G A I+ + ++TS+Y+ V + LA+ + Sbjct 3692 SNFALALCSGVMWLYTYSIGEA-SSPIAYLVFVTTLTSDYTITVFVTVNLAKVCTYAIFA 3750 Query 3765 YCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMN 3824 Y P + ++ I+L+Y LG+ CTCYFG+F LLN R +GVYD+ VSTQEFR+M Sbjct 3751 YSPQLTLVFPEVKMILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMT 3810 Query 3825 SQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESS 3884 + L P+NS +A LN KL+G+GG PCIKVA +QSK++D+KCTSVVLLSVLQQL +E++ Sbjct 3811 ANNLTAPRNSWEAMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEAN 3870 Query 3885 SKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAI 3944 S+ WA CV+ HNDIL A D +EAFEK VSL + L++ G VD++ L ++ D + LQA Sbjct 3871 SRAWAFCVKCHNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIFDTPSVLQAT 3930 Query 3945 ASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEK 4003 SEFS L ++A AQ+AY++A+ +GD S VLK L+K++N+AK+ +++D A+ RKLE+ Sbjct 3931 LSEFSHLATFAELEAAQKAYQEAMDSGDTSPQVLKALQKAVNIAKNAYEKDKAVARKLER 3990 Query 4004 MADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIP 4063 MADQAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDND LN II+NAR+GC+PL++IP Sbjct 3991 MADQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGIISNARNGCIPLSVIP 4050 Query 4064 LTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLA 4123 L + KL VVIPD+ + + YA ALW+I + + D++IV+ S++ +D++ NL Sbjct 4051 LCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDV-VDSNENLT 4109 Query 4124 WPLIVTALRAN-SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVL 4182 WPL++ RA+ SAVKLQNNE+ P L+ M +AG QT C + ++LAYY +G + ++ Sbjct 4110 WPLVLECTRASTSAVKLQNNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYYEPVQGRKMLM 4168 Query 4183 ALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMV 4242 ALLSD LKWAR DG ++ EL+PPC+F+ PKGP+++YLYF+K LNNL+RG V Sbjct 4169 ALLSDNAYLKWARVEGKDGFVSV--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQV 4226 Query 4243 LGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHT 4302 LG +AATVRLQAG+ TE +NS+VLS F VD KAY D++ +GG P+TNCVKML T Sbjct 4227 LGHIAATVRLQAGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKT 4286 Query 4303 GTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVG 4362 GTG AI+V PE+ DQE++GGAS CLYCR HI+HP+ G C KGK+VQIP C DPVG Sbjct 4287 GTGIAISVKPESTADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVG 4346 Query 4363 FTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 F L NT C VC W GYGC+CD LR+ L + +FLN Sbjct 4347 FCLSNTPCNVCQYWIGYGCNCDSLRQAALPQSKDSNFLN 4385 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 296/1193 (25%), Positives = 514/1193 (43%), Gaps = 151/1193 (13%) Query 101 GETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQEN 160 G+ +G+ P+ E+ + +LLRK G GG+ Y ++ + + +DF+ + Sbjct 123 GKPIGMFFPYDIELVTGKQNILLRKYGR---GGYHYTP--FHYERDNTSCPEWMDDFEAD 177 Query 161 WNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAG-----KASCTL 215 K++ + L+++L GG T VD CG DG P+ L+A+ G + Sbjct 178 PKGKYA----QNLLKKLIGGDVTP-VDQYMCGVDGKPISAYAFLMAKDGITKLADVEADV 232 Query 216 SEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVF 275 + + D G + + + + W+ ER + Y Q+ F I + D P++ F Sbjct 233 AARAD----DEGFITLKNNLYRLVWHVERKDVPYPKQSIFTINSVVQKDGVENTPPHY-F 287 Query 276 PLNSIIKTIQPR----------VEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDH 325 L I T+ PR +++K L F G+ S + S ++C Sbjct 288 TLGCKILTLTPRNKWSGVSDLSLKQKLLYTFYGK-------ESLENPTYIYHSAFIECGS 340 Query 326 CGETSWQTGDFVKATCEFCGTENLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGP--EH 382 CG SW TG+ ++ CG + + G + NA++ CP +H Sbjct 341 CGNDSWLTGNAIQGFACGCGASYTANDVEVQSSGMIKPNALLCATCPFAKGDSCSSNCKH 400 Query 383 SLAE---YHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVV 439 S+A+ Y +E I T+ FGG ++Y GC Y+VPRA + + + Sbjct 401 SVAQLVSYLSER-CNVIADSKSFTLIFGGVAYAYFGCEEGTMYFVPRAKSVVSRIGDSIF 459 Query 440 GEGSEGLNDNLLEI----LQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLD 495 G G + + +I L++ + ++N VG+F +N+ + IL+ + + + +KG+ Sbjct 460 -TGCTGSWNKVTQIANMFLEQTQHSLNFVGEFVVNDVVLAILSGTTTNVDKIRQLLKGVT 518 Query 496 YKAFKQIVESCGNFKVTKGKAKKGAWNIG----EQKSILSPLYAFAS--EAARVVRSIFS 549 + + + VT G A N+G + +I +P E+ + V +I Sbjct 519 LDKLRDYLADY-DVAVTAGPFMDNAINVGGTGLQYAAITAPYVVLTGLGESFKKVATIPY 577 Query 550 RTLETAQNSV-----RVLQKAAITILD-GISQYSLRLIDAMMFTSDLATNNLVVMAYITG 603 + + ++++ VL + +D G+S +S L D + DL+ V Y Sbjct 578 KVCNSVKDTLTYYAHSVLYRVFPYDMDSGVSSFSELLFDCV----DLS----VASTYFLV 629 Query 604 GVVQ-LTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGG 662 ++Q T +++ I + + +LD E + FL D + + A Sbjct 630 RLLQDKTGDFMSTIITSCQTAVSKLLDTCFEATEATFNFLLDLAGLFRIFLRNAYVYTSQ 689 Query 663 QIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKA-LNLGETFVTHSKGLYRKCV 721 V ++ V+ L+NK + L + G+ + A + G + G Y CV Sbjct 690 GFVVVNGKVSTLVKQVLDLLNKGMQLLHTKVSWAGSNISAVIYSGRESLIFPSGTYY-CV 748 Query 722 KSR-----EETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDL-----QPLEQPTS 771 ++ ++ +++P + K+ + G PT+ T V + ++ LEQ Sbjct 749 TTKAKSVQQDLDVILPGEFSKKQL---GLLQPTDNSTTVSVTVSSNMVETVVGQLEQTNM 805 Query 772 EAVEAPLVGTPVCINGLMLLEIKDTEKYCALAP---NMMVTNNTFTLKGGAPTK-VTFGD 827 + + +VG V I+ + + K+ + + A P N F LKGGAP K V FG Sbjct 806 HSPDV-IVGDYVIISEKLFVRSKEEDGF-AFYPACTNGHAVPTLFRLKGGAPVKKVAFGG 863 Query 828 DTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYTVELGTEVNEFACVVADAVIKTLQPV 886 D V EV +SV + + + +D +L + + V+ + EFA VV + V L + Sbjct 864 DQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKEQVSDLLVKL 923 Query 887 SELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEE------------EG 934 + DLD++ A Y F+ G+ +S M S +P + DEE E Sbjct 924 LRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVEASDLEEGES 983 Query 935 DCEEEEFEPSTQYEYGTEDDY------QGKPL-EFGATSAALQPEEEQEEDWLDDDSQQT 987 +C E + DD + PL E + ++Q E + E ++D +Q Sbjct 984 ECISETSTEQVDVSHEISDDEWAAAVDEAFPLDEAEDVTESVQEEAQPVEVPVEDIAQVV 1043 Query 988 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIE----------------------- 1024 + +T + VEV PQ+ ++L QTI+ Sbjct 1044 IADTL----QETPVVSDTVEVPPQV-VKLPSEPQTIQPEVKEVAPVYEADTEQTQSVTVK 1098 Query 1025 ---------VNSFSGYLK--LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAG 1073 V+ S + +T+ V I D ++ AK +V+VNAAN +LKHGGG+AG Sbjct 1099 PKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAG 1158 Query 1074 ALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKS 1133 A+N A+ A+Q ESD+YI GPL+VG S +L GH+LAK+ LHVVGP+ +D+ LL Sbjct 1159 AINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSK 1218 Query 1134 AYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL 1186 Y+ N + +++ PL+SAGIFG P S + +T V + V +++Y L Sbjct 1219 CYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSL 1271 >sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 2190 bits (5675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1248/3278 (38%), Positives = 1855/3278 (57%), Gaps = 185/3278 (6%) Query 1259 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 1312 I G ++ S V ++ P VGD V+ +G A VV P +A + Sbjct 1156 IAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSL 1215 Query 1313 LAK---ALRKVPTDNYITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIIS 1361 L+K A+ P +T G+ G Y + EAKT + ++ + S+ Sbjct 1216 LSKCYKAMNAYPL--VVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI 1273 Query 1362 NEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGAR 1421 + + L LR + A++ + VC + A ++ K + VD G + Sbjct 1274 VDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-GVQ 1332 Query 1422 FYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPD 1481 +Y YTSK T+ ++ N + +++MPLGYV+HGL+L +A +R + VP +++ + Sbjct 1333 YYCYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKE 1391 Query 1482 AVTAYNGYLTSSSK--TPEEHFIETISLAGSYKDWSYSG-----QSTQLGIEFLKRGDKS 1534 L S P E FI+ + G Y W Q +L + L D++ Sbjct 1392 Q----EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLN-KLLHWSDQT 1446 Query 1535 VYYTSNPTTFHLDGEVITFDNLKTLLSLREVRT-----IKVFTTVDNINLHTQVVDMSMT 1589 + Y + + F+ L + + RT I+V TVD +N T V++ T Sbjct 1447 ICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKNT 1506 Query 1590 YGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYMS 1648 Y Q G + +GAD++ P G + Y+ N +A E Y DP+FL R+ S Sbjct 1507 YRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFYS 1566 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEA 1707 KWK + + S+K +DNNCYL ++TL + ++KF PALQ A+ + + G++ Sbjct 1567 LKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDS 1626 Query 1708 ANFCALILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVE 1766 +F ALI+AY N T G D + + A L S + V C CG + L+G++ Sbjct 1627 TDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLK 1686 Query 1767 AVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGT---FTC 1823 A Y+G + E + + C CG + + +V+ +P++++S P + + T F Sbjct 1687 ACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFVA 1746 Query 1824 ASEYTG-NYQCGHYKHITSKETLYC-IDGALLTKSSEYKGPITDVFYKENSYTTTIKPVT 1881 + + G GHY H K L D ++K+S++K +TDV + Y++ V Sbjct 1747 FNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVVR 1806 Query 1882 YKLDGVVCTEIDPKLDNYYKKDNSYFT-EQPIDLVPNQPYPNASFDNFKFVCDNIKFADD 1940 Y LDG TE+DP L +Y KD YFT E P+ P + + N V + + D Sbjct 1807 YSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGGD 1866 Query 1941 -----LNQLTGY--KKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWH 1993 N L G+ KP +++ +F P +GDV+ ++ Y P +K GA KPI+W Sbjct 1867 AISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILW- 1925 Query 1994 VNNATNKATY-----KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVS 2048 NKA+Y K N +R ++ P+E N F L E PV Sbjct 1926 ----VNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVEST------------PVE 1969 Query 2049 EEVVENPTIQKD--VLECNVKTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVD-NSS 2104 V+ +Q++ +++C V D + A++S + E + DL YVD Sbjct 1970 PPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQ 2029 Query 2105 LTIKKPNELSRVLGLKTLATHGL---AAVNSVPWDTIANYAKPFLNK----VVSTTTNIV 2157 + + K N LS +L L T+ + + AA S+ + F K T T V Sbjct 2030 VIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAV 2089 Query 2158 TRCLNRV-------------CTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTT---IAKN 2201 C+ V C +++ F L L + ++ + +K S T + N Sbjct 2090 GSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGN 2149 Query 2202 TVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSN----- 2256 VK ++ S + L+ ++ + +++ V L S+ + VL S+ Sbjct 2150 VVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFED 2209 Query 2257 --------------LGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTY 2301 LG+ S C G Y + + + T+C S C+ CL DS+ Y Sbjct 2210 AQGLKKFYKEVRAYLGISSACDGLASAY-RANSFDVPTFCANRSAMCNWCLISQDSITHY 2268 Query 2302 PSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISN 2361 P+L+ +Q +S + ++ E LAY+L+T F L LA + FF+ ++ Sbjct 2269 PALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWR 2328 Query 2362 SW------LMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKR 2415 S+ WL ++ P++ +VRMY A + + K Y HV++GC + C++CYKR Sbjct 2329 SYNYAVSSAFWLFTHI----PMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKR 2384 Query 2416 NRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSL 2475 NR TRVE +T+V G +R+FY+ ANGG FC+ HNWNCV+CDT G+TFI +EVA DL+ Sbjct 2385 NRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTT 2444 Query 2476 QFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLR----ANN 2531 +RPIN TD+S Y VDSVTVK + + + GQ YER L F NLD L+ Sbjct 2445 ALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKT 2504 Query 2532 TKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMF 2591 T G N I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ VGDS+E+A KMF Sbjct 2505 TTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMF 2564 Query 2592 DAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKD 2650 D++VN+F S +NV +KL+ L++TA + + + +VL+TFI AAR V+SDVET + Sbjct 2565 DSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNE 2624 Query 2651 VVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIA 2710 +V+ ++ +H+ DI++T +S NNY+ +Y K ++++ DLG+ IDC+A +N V ++ N A Sbjct 2625 IVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGA 2684 Query 2711 LIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNN-- 2768 IWN +M LS+ L++QIR A +K NL F+LT + R N+++ + KIV Sbjct 2685 CIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVR--FTANKIVGGAP 2742 Query 2769 -W--------LKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRD 2819 W LK + T++ A + YL P M + I+ +K +D G+ RD Sbjct 2743 TWFNALRDFTLKGYVLATIIVFLCAVLMYLCLPTFSMVPVEFYEDRILDFKVLDNGIIRD 2802 Query 2820 IASTDTCFANKHADFDTWFSQR-GGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTN 2878 + D CFANKH F W+ + GG Y N CPL AVI G +P +P T L N Sbjct 2803 VNPDDKCFANKHRSFTQWYHEHVGGVYDNSITCPLTVAVIAGVAGARIPDVP-TTLAWVN 2861 Query 2879 GDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNV 2938 + F+ RVF+ G++CYTP I Y F+ S C+L +ECT+F+DA G+ PYC+D V Sbjct 2862 NQIIFFVSRVFANTGSVCYTPIDEIPYKSFSDSGCILPSECTMFRDAEGRMTPYCHDPTV 2921 Query 2939 LEGSVAYESLRPDTRYVLMDGSI-IQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVC 2997 L G+ AY +RP RY L DG++ I+FP E ++R+ T ++YCR G+CE ++ GVC Sbjct 2922 LPGAFAYSQMRPHVRYDLYDGNMFIKFPEVVFESTLRITRTLSTQYCRFGSCEYAQEGVC 2981 Query 2998 VSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVV 3057 ++T+G W + ND++ + PGV+CG D ++++ + L QPI ++ S+V G + + Sbjct 2982 ITTNGSWAIFNDHHLNRPGVYCGSDFIDIVRRLAVSLFQPITYFQLTTSLVLGIGLCAFL 3041 Query 3058 TCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLT 3117 T L YY + +RAF +Y+ + +++ +C Y+ +Y Y TFY T Sbjct 3042 TLLFYYINKVKRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVPYTALYYYATFYFT 3101 Query 3118 NDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV-VF-NGVSFSTF 3175 N+ +F+ H+ W +MF P+VP W+T Y + + +HF+W + + K+ V VF +G +F Sbjct 3102 NEPAFIMHVSWYIMFGPIVPIWMTCVYTVAMCFRHFFWVLAYFSKKHVEVFTDGKLNCSF 3161 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 ++AA F++NK+ Y LR+ L Y+R+L L+NKYKYFSGAM+T +YREAA CHLA Sbjct 3162 QDAASNIFVINKDTYAALRNS--LTNDAYSRFLGLFNKYKYFSGAMETAAYREAAACHLA 3219 Query 3236 KALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWL 3295 KAL +S +GSD+LYQPP SITS VLQSG KM+ PSG VE CMVQVTCG+ TLNGLWL Sbjct 3220 KALQTYSETGSDLLYQPPNCSITSGVLQSGLVKMSHPSGDVEACMVQVTCGSMTLNGLWL 3279 Query 3296 DDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKL 3352 D+ V+CPRHV+C ++ + +PNY+ LLI +NH+F VQ LRV+GH+MQ +LKL Sbjct 3280 DNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIGAPANLRVVGHAMQGTLLKL 3339 Query 3353 KVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVG 3412 VD ANP TP Y F ++PG FSVLACYNG P+G + MRPN+TIKGSFL GSCGSVG Sbjct 3340 TVDVANPSTPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVG 3399 Query 3413 FNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLY 3472 + + ++FCYMH MEL G H G+ +G YG F+D+Q Q TD +VNV+AWLY Sbjct 3400 YTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLY 3459 Query 3473 AAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCASL 3531 AA++NG WF+ T++ FN A+ + E + VD+L + +TG+A+ + ++ Sbjct 3460 AAILNGCAWFVKPNRTSVVSFNEWALANQFTEFVGTQSVDML---AVKTGVAIEQLLYAI 3516 Query 3532 KELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSL 3591 ++L G G+ ILGS +LEDEFTP DV Q GV QS V++ GT HWL T++++ Sbjct 3517 QQLY-TGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQSGVRKVTYGTAHWLFATLVSTY 3575 Query 3592 LVLVQSTQWSLFFFLYENAFLP---FAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVA 3648 ++++Q+T+++L+ +L+E +P F + + M AF M+ VKHKH FL LFLLP + Sbjct 3576 VIILQATKFTLWNYLFET--IPTQLFPLLFVTM-AFVMLLVKHKHTFLTLFLLPVAICLT 3632 Query 3649 YFNMVYMP----ASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDG 3704 Y N+VY P +S ++ + WL + + D +Y S ++L+++ R Sbjct 3633 YANIVYEPTTPISSALIAVANWLAPTNAYMRTTH-TDIGVYISMSLVLVIVVKRLYNPSL 3691 Query 3705 ARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVE 3764 + L + + +Y G A I+ + ++TS+Y+ V + LA+ + Sbjct 3692 SNFALALCSGVMWLYTYSIGEA-SSPIAYLVFVTTLTSDYTITVFVTVNLAKVCTYAIFA 3750 Query 3765 YCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMN 3824 Y P + ++ I+L+Y LG+ CTCYFG+F LLN R +GVYD+ VSTQEFR+M Sbjct 3751 YSPQLTLVFPEVKMILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMT 3810 Query 3825 SQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESS 3884 + L P+NS +A LN KL+G+GG PCIKVA +QSK++D+KCTSVVLLSVLQQL +E++ Sbjct 3811 ANNLTAPRNSWEAMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEAN 3870 Query 3885 SKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAI 3944 S+ WA CV+ HNDIL A D +EAFEK VSL + L++ G VD++ L ++ D + LQA Sbjct 3871 SRAWAFCVKCHNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIFDTPSVLQAT 3930 Query 3945 ASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEK 4003 SEFS L ++A AQ+AY++A+ +GD S VLK L+K++N+AK+ +++D A+ RKLE+ Sbjct 3931 LSEFSHLATFAELEAAQKAYQEAMDSGDTSPQVLKALQKAVNIAKNAYEKDKAVARKLER 3990 Query 4004 MADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIP 4063 MADQAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDND LN II+NAR+GC+PL++IP Sbjct 3991 MADQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGIISNARNGCIPLSVIP 4050 Query 4064 LTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLA 4123 L + KL VVIPD+ + + YA ALW+I + + D++IV+ S++ +D++ NL Sbjct 4051 LCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDV-VDSNENLT 4109 Query 4124 WPLIVTALRAN-SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVL 4182 WPL++ RA+ SAVKLQNNE+ P L+ M +AG QT C + ++LAYY +G + ++ Sbjct 4110 WPLVLECTRASTSAVKLQNNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYYEPVQGRKMLM 4168 Query 4183 ALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMV 4242 ALLSD LKWAR DG ++ EL+PPC+F+ PKGP+++YLYF+K LNNL+RG V Sbjct 4169 ALLSDNAYLKWARVEGKDGFVSV--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQV 4226 Query 4243 LGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHT 4302 LG +AATVRLQAG+ TE +NS+VLS F VD KAY D++ +GG P+TNCVKML T Sbjct 4227 LGHIAATVRLQAGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKT 4286 Query 4303 GTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVG 4362 GTG AI+V PE+ DQE++GGAS CLYCR HI+HP+ G C KGK+VQIP C DPVG Sbjct 4287 GTGIAISVKPESTADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVG 4346 Query 4363 FTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFL 4400 F L NT C VC W GYGC+CD LR+ L + +FL Sbjct 4347 FCLSNTPCNVCQYWIGYGCNCDSLRQAALPQSKDSNFL 4384 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 302/1196 (25%), Positives = 519/1196 (43%), Gaps = 157/1196 (13%) Query 101 GETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQEN 160 G+ +G+ P+ E+ + +LLRK G GG+ Y ++ + + +DF+ + Sbjct 123 GKPIGMFFPYDIELVTGKQNILLRKYGR---GGYHYTP--FHYERDNTSCPEWMDDFEAD 177 Query 161 WNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAG-----KASCTL 215 K++ + L+++L GG T VD CG DG P+ L+A+ G + Sbjct 178 PKGKYA----QNLLKKLIGGDVTP-VDQYMCGVDGKPISAYAFLMAKDGITKLADVEADV 232 Query 216 SEQLD---FIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPN 272 + + D FI K +Y + W+ ER + Y Q+ F I + D P+ Sbjct 233 AARADDEGFITLKNNLY-------RLVWHVERKDVPYPKQSIFTINSVVQKDGVENTPPH 285 Query 273 FVFPLNSIIKTIQPR----------VEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMK 322 + F L I T+ PR +++K L F G+ S + S ++ Sbjct 286 Y-FTLGCKILTLTPRNKWSGVSDLSLKQKLLYTFYGK-------ESLENPTYIYHSAFIE 337 Query 323 CDHCGETSWQTGDFVKATCEFCGTENLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGP- 380 C CG SW TG+ ++ CG + + G + NA++ CP Sbjct 338 CGSCGNDSWLTGNAIQGFACGCGASYTANDVEVQSSGMIKPNALLCATCPFAKGDSCSSN 397 Query 381 -EHSLAE---YHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHT 436 +HS+A+ Y +E I T+ FGG ++Y GC Y+VPRA + + Sbjct 398 CKHSVAQLVSYLSER-CNVIADSKSFTLIFGGVAYAYFGCEEGTMYFVPRAKSVVS-RIG 455 Query 437 GVVGEGSEGLNDNLLEI----LQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVK 492 + G G + + +I L++ + ++N VG+F +N+ + IL+ + + + +K Sbjct 456 DSIFTGCTGSWNKVTQIANMFLEQTQHSLNFVGEFVVNDVVLAILSGTTTNVDKIRQLLK 515 Query 493 GLDYKAFKQIVESCGNFKVTKGKAKKGAWNIG----EQKSILSPLYAFAS--EAARVVRS 546 G+ + + + VT G A N+G + +I +P E+ + V + Sbjct 516 GVTLDKLRDYLADY-DVAVTAGPFMDNAINVGGTGLQYAAITAPYVVLTGLGESFKKVAT 574 Query 547 IFSRTLETAQNSV-----RVLQKAAITILD-GISQYSLRLIDAMMFTSDLATNNLVVMAY 600 I + + ++++ VL + +D G+S +S L D + DL+ V Y Sbjct 575 IPYKVCNSVKDTLTYYAHSVLYRVFPYDMDSGVSSFSELLFDCV----DLS----VASTY 626 Query 601 ITGGVVQ-LTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEI 659 ++Q T +++ I + + +LD E + FL D + + A Sbjct 627 FLVRLLQDKTGDFMSTIITSCQTAVSKLLDTCFEATEATFNFLLDLAGLFRIFLRNAYVY 686 Query 660 VGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKA-LNLGETFVTHSKGLYR 718 V ++ V+ L+NK + L + G+ + A + G + G Y Sbjct 687 TSQGFVVVNGKVSTLVKQVLDLLNKGMQLLHTKVSWAGSNISAVIYSGRESLIFPSGTYY 746 Query 719 KCVKSR-----EETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDL-----QPLEQ 768 CV ++ ++ +++P + K+ + G PT+ T V + ++ LEQ Sbjct 747 -CVTTKAKSVQQDLDVILPGEFSKKQL---GLLQPTDNSTTVSVTVSSNMVETVVGQLEQ 802 Query 769 PTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAP---NMMVTNNTFTLKGGAPTK-VT 824 + + +VG V I+ + + K+ + + A P N F LKGGAP K V Sbjct 803 TNMHSPDV-IVGDYVIISEKLFVRSKEEDGF-AFYPACTNGHAVPTLFRLKGGAPVKKVA 860 Query 825 FGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYTVELGTEVNEFACVVADAVIKTL 883 FG D V EV +SV + + + +D +L + + V+ + EFA VV + V L Sbjct 861 FGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKEQVSDLL 920 Query 884 QPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEE---EE 940 + + DLD++ A Y F+ G+ +S M S +P + DEE + E EE Sbjct 921 VKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVEASDLEE 980 Query 941 FEPSTQYEYGTE----------DDY-----QGKPL-EFGATSAALQPEEEQEEDWLDDDS 984 E E TE D++ + PL E + ++Q E + E ++D + Sbjct 981 GESECISETSTEQVDVSHEISDDEWAAAVDEAFPLDEAEDVTESVQEEAQPVEVPVEDIA 1040 Query 985 QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIE-------------------- 1024 Q + +T + VEV PQ+ ++L QTI+ Sbjct 1041 QVVIADTL----QETPVVSDTVEVPPQV-VKLPSEPQTIQPEVKEVAPVYEADTEQTQSV 1095 Query 1025 ------------VNSFSGYLK--LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG 1070 V+ S + +T+ V I D ++ AK +V+VNAAN +LKHGGG Sbjct 1096 TVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGG 1155 Query 1071 VAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQL 1130 +AGA+N A+ A+Q ESD+YI GPL+VG S +L GH+LAK+ LHVVGP+ +D+ L Sbjct 1156 IAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSL 1215 Query 1131 LKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKL 1186 L Y+ N + +++ PL+SAGIFG P S + +T V + V +++Y L Sbjct 1216 LSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSL 1271 >sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus HKU5 OX=694008 GN=1a PE=3 SV=1 Length=4481 Score = 2179 bits (5646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1223/3124 (39%), Positives = 1810/3124 (58%), Gaps = 140/3124 (4%) Query 1391 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 1450 +C + A ++ + + + VD G ++Y Y+SK + +I N + + MP+ Sbjct 1379 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 1436 Query 1451 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 1510 GYVTHGL+L +A + ++ + VP ++S D V N + + +TPE+ FI T+ G Sbjct 1437 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 1494 Query 1511 YKDWSY-SGQSTQLGIEF---LKRGDKSVYYTSNPTTFHLDGEV-ITFDNL---KTLLSL 1562 Y W +G+ G+ + L D+++ Y N + + G++ + FD+L +T L+ Sbjct 1495 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADN-KFYVVKGQIALPFDSLEKCRTYLTS 1553 Query 1563 R--EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 R + + + V T+D +N T V++ + TY Q G + G+D++ P G+ Y+ Sbjct 1554 RAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL 1613 Query 1621 LPN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATA 1679 N + + E Y T D +FL RY S L KKWKY +G+ S+K NNCY+ Sbjct 1614 ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVT 1673 Query 1680 LLTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH 1738 +L L + E+KF PALQ AY + + G++ F ALI+AY + T GE D + + Sbjct 1674 MLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSK 1733 Query 1739 ANLDS-CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYL 1797 A L + K V C CG Q TT G++A +Y+G S ++ + C CG + L Sbjct 1734 AELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQL 1793 Query 1798 VQQESPFVMMSAPPAQYELKHGTFTCASEYTG-------NYQCGHYKHITSKETL-YCID 1849 V+ +P++++S + + + +YT GHY H+ K+ L Y D Sbjct 1794 VEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYD 1853 Query 1850 GALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTE 1909 L+K+S+ K +TDV+Y + Y+ V Y LDG ++DP L +Y KD YFT+ Sbjct 1854 SGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTK 1913 Query 1910 QPI------DLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGY--KKPASRELKVTFFP 1961 +P+ ++ Y N+ + + N L G+ KP S++L +FFP Sbjct 1914 KPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFP 1973 Query 1962 DLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVET 2021 D GDV+ +Y Y P +K GA L KPI+W N+ + A K N +R ++ PV Sbjct 1974 DFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTL 2033 Query 2022 SNSFDVLKSEDAQGMDNLAC-EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGD---II 2076 N + VL+ Q ++ A ED KP S +V E+ + +++C V D + Sbjct 2034 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 2093 Query 2077 LKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 2135 P + + + +G DL A YVD N L + K N S + + T+ L+ + + Sbjct 2094 NDP--QGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGS 2151 Query 2136 DT----IANYAKPFLNKVVSTTTNIVT---RCLNRVCTNYMP------YFFTLLLQLC-- 2180 T I A + S T N+ T + L R+ N + F LL L Sbjct 2152 ITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLIL 2211 Query 2181 --TFTRSTN-SRIKASMPTTIAKNTVKS-VGKFCLEASFNYLKSPNFSKLINIIIWFLLL 2236 TF +S N S +K + V + V K C A+++ L F ++ LL Sbjct 2212 PFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVV-KFKRIDWKSTLRLLF 2270 Query 2237 SVC------------------LGSLIYSTAALGVLM------SNLGMPSYCTGYREGYLN 2272 +C L S + A G+L S LG+ S C G E Y N Sbjct 2271 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRN 2330 Query 2273 STNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAY 2331 + + +C+ S C+ CL G DSL Y + + IQ ++S+ ++ V E+ LAY Sbjct 2331 -VSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAY 2389 Query 2332 ILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFAS 2389 +L+T F VL L Q FFSY V++ S ++L+ V P+ +VR+Y F A Sbjct 2390 VLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLAC 2449 Query 2390 FYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHN 2449 +++ + Y HV++GC + C++CYKRNR TRVE +T+V G +R+FY+ ANGG FC HN Sbjct 2450 LWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHN 2509 Query 2450 WNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAG 2509 WNCV+CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + G Sbjct 2510 WNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREG 2569 Query 2510 QKTYERHSLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLM 2565 YER+ L +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ++ Sbjct 2570 ASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVL 2629 Query 2566 CQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVS 2625 +P+LL+D +V+ VGDS E+A KM D+YVN+F S F V +KL LVATA + + Sbjct 2630 SKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDD 2689 Query 2626 LDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMT 2684 V+ TF AAR V+SDVET +V+ L+ +++ D+++T + NNY+ +Y K +++ Sbjct 2690 FQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVA 2749 Query 2685 PRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTC 2744 DLG ID +A +N ++ N A IWN D+M LS+ L++QIR A +K N+PF+LT Sbjct 2750 TADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTT 2809 Query 2745 ATTRQVVNVVTTKIA---LKGGKIVNNWLKQLIK--------VTLVFLFVAAIFYLITPV 2793 + R N+++ K + L GG WL +L VTLV +A + YL P Sbjct 2810 SRLRSADNILSVKFSATKLSGG--APKWLLKLRDFTWKSYCVVTLVVFAMAVLSYLCLPA 2867 Query 2794 HVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQR-GGSYTNDKACP 2852 MS+ + I+ YK ++ G+ RDI +DTCFANK+ F WF++ GG + ND +CP Sbjct 2868 FNMSQVSFHEDRILTYKVVENGIIRDITPSDTCFANKYQSFSKWFNEHYGGLFNNDISCP 2927 Query 2853 LIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSA 2912 + AVI G VP LP + L F+ RVF++ N+CYTP+ I Y F+ S Sbjct 2928 VTVAVIAGVAGARVPNLPANVAWVGRQIVL-FVSRVFASSNNVCYTPTAEIPYERFSDSG 2986 Query 2913 CVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSI-IQFPNTYLEG 2971 CVLA+ECT+F+DA GK PYCYD VL G+ AY+ ++P RY + D + I+FP E Sbjct 2987 CVLASECTLFRDAEGKINPYCYDPTVLPGASAYDQMKPHVRYDMYDSDMYIKFPEVVFES 3046 Query 2972 SVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMF 3031 ++R+ T + YCR G+CE + GVC++T+G W + ND+Y + PGV+CG + +++ + Sbjct 3047 TLRITKTLATRYCRFGSCEDANEGVCITTNGSWAIYNDHYANKPGVYCGDNYFDIVRRLG 3106 Query 3032 TPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTV 3091 L QP+ +S S+ G ++ I +T YY + +RA +Y+ L++ Sbjct 3107 LSLFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVAVAAALLNSLC 3166 Query 3092 LCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTK 3151 LC L Y+ +Y Y TFYLT + +F+ H+ W VMF +VP W+ AYI+ + + Sbjct 3167 LCFVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMVFAYIVGVCLR 3226 Query 3152 HFYWFFSNYLKRRV-VF-NGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQ--YNRY 3207 H W + + K+ V VF +G +F++AA F++NK+ Y+ LR+ + TQ YNRY Sbjct 3227 HLLWVMAYFSKKHVEVFTDGKLNCSFQDAAANIFVINKDTYVALRNSI----TQDSYNRY 3282 Query 3208 LALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFR 3267 L+++NKYKY+SGAMDT SYREA+ HL KAL +S +GSDVL+QPP S+TS+VLQSG Sbjct 3283 LSMFNKYKYYSGAMDTASYREASAAHLCKALQVYSETGSDVLFQPPNCSVTSSVLQSGLV 3342 Query 3268 KMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNH 3327 KMA PSG VE CMVQVTCG+ TLNGLWLD+ V+CPRHV+C ++ + +PNY+ LL+ K+N Sbjct 3343 KMAAPSGVVENCMVQVTCGSMTLNGLWLDNYVWCPRHVMCPADQLSDPNYDALLVSKTNL 3402 Query 3328 NFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGS 3384 +F+VQ LRV+GH+M +LKL V++ANP+TP Y F ++PG +FSVLACYNG Sbjct 3403 SFIVQKNVGAPANLRVVGHTMVGTLLKLTVESANPQTPAYTFTTVKPGASFSVLACYNGR 3462 Query 3385 PSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNF 3444 P+GV+ MR N TIKGSFL GSCGSVG+ + + ++FCYMH MEL G H G +G Sbjct 3463 PTGVFMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHTGCAFDGVM 3522 Query 3445 YGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-E 3503 YG F DRQ Q +D T+N++AWLYAA++NG WF+ T + FN AM + E Sbjct 3523 YGAFEDRQVHQVQLSDKYCTINIVAWLYAAILNGCNWFVKPNKTGIATFNEWAMSNQFTE 3582 Query 3504 PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC 3563 + VD+L + +TG++V + ++ + L G G+TILG+++LEDEFTP DV Q Sbjct 3583 FIGTQSVDML---AHKTGVSVEQLLYAI-QTLHKGFQGKTILGNSMLEDEFTPDDVNMQV 3638 Query 3564 SGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSA 3623 GV QS VKR G HWL T+L + + +Q T+++++ +L+E L ++ + A Sbjct 3639 MGVVMQSGVKRISYGLVHWLFTTLLLAYVATLQLTKFTIWNYLFEVIPLQLTPLVLCVMA 3698 Query 3624 FAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLDMVDTSLSGFKL 3679 M+ VKHKH FL LFLLP+ + Y N+VY P +S ++ + WL+ + Sbjct 3699 CVMLTVKHKHTFLTLFLLPTAICLTYANIVYEPQTPVSSALIAVANWLNPASVYMRTTH- 3757 Query 3680 KDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIIS 3739 D +Y S L ++ R + + L + + Y G+ ++ + + Sbjct 3758 TDLGVYLSLCFALAVVVRRLYRPNASNLALALGSAMVWFYTYTTGDC-SSPLTYLMFLTT 3816 Query 3740 VTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCL 3799 +TS+Y+ V + +A+ + Y P ++ ++L+Y +GYFCT YFG+F L Sbjct 3817 LTSDYTVTVFLAVNVAKFFARVVFLYAPHAGFIFPEVKLVLLMYLAVGYFCTVYFGVFSL 3876 Query 3800 LNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQ 3859 LN R+ LGVYDY VSTQEFRY+ GL P+NS +A +LN+KL+G+GG PCIK+A+VQ Sbjct 3877 LNLKLRVPLGVYDYTVSTQEFRYLTGNGLHAPRNSWEALRLNMKLIGIGGTPCIKIASVQ 3936 Query 3860 SKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLL 3919 SK++D+KCTSVVLLSVLQQL +E++SK WA CV+LHNDIL A D TEAF+ V L + L+ Sbjct 3937 SKLTDLKCTSVVLLSVLQQLHLEANSKAWAHCVKLHNDILAATDPTEAFDNFVCLFATLM 3996 Query 3920 SMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLK 3978 S VD+ L ++LD+ + LQA SEFS L SYA AQ +Y++A+ +GD S VLK Sbjct 3997 SFSANVDLEALASDLLDHPSVLQATLSEFSHLASYAELEAAQSSYQKALNSGDASPQVLK 4056 Query 3979 KLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLR 4038 L+K++N+AK+ +++D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQTMLF M++ Sbjct 4057 ALQKAVNIAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIK 4116 Query 4039 KLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEI 4098 KLDND LN +I+NAR+GCVPL+++PL + KL VVIPD + + +YA ALW+I Sbjct 4117 KLDNDVLNGVISNARNGCVPLSVVPLCASNKLRVVIPDITIWNKVVTWPSLSYAGALWDI 4176 Query 4099 QQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR-ANSAVKLQNNELSPVALRQMSCAAG 4157 + + D ++V+ S+++ N +L WPL++ R A+SAV LQNNE+ P L+ M +AG Sbjct 4177 SLINNVDGEVVKSSDVTETNE-SLTWPLVLECTRAASSAVTLQNNEIRPSGLKTMVVSAG 4235 Query 4158 TTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVT 4217 C + ++LAYY +G + ++ +LS+ LKWA+ DG I EL+PPC+F+ Sbjct 4236 IDHANC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRDGFVNI--ELQPPCKFLI 4292 Query 4218 DTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAA 4277 PKGP+V+YLYF+K LNNL+RG +LG +AATVRLQAG+ TE NS+VLS F+VD Sbjct 4293 AGPKGPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQAGSNTEFAINSSVLSAVTFSVDPG 4352 Query 4278 KAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP 4337 KAY D++ +GG P+TNCVKML TGTG A++V PEAN DQ+++GGAS CLYCR HI+HP Sbjct 4353 KAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPEANADQDTYGGASVCLYCRAHIEHP 4412 Query 4338 NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQ 4397 + G C KGK+VQ+P DPVGF L+NT C VC W G+GC+CD LR + + Sbjct 4413 DVTGVCKFKGKFVQVPLHI-RDPVGFCLQNTPCNVCQFWIGHGCNCDALRGTTIPQSKDS 4471 Query 4398 SFLN 4401 +FLN Sbjct 4472 NFLN 4475 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 250/1066 (23%), Positives = 445/1066 (42%), Gaps = 91/1066 (9%) Query 13 HVQLSLPVLQVRDVLVR---GFGDSVEEVLSEARQHLKDGTCGLV--EVEKGVLPQLEQP 67 HV L + D++++ F D E + L G+ L + KG + L P Sbjct 28 HVSLKASLCDAGDLVLKISPWFMDG-ESAYKHVSEQLSKGSKLLFVPQTLKGFIRHLPGP 86 Query 68 YVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETL-----GVLVPHVGEIPVAYRKVL 122 V++ MV +A G G TL G+ P ++ + L Sbjct 87 RVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQGKRVGMFFPFDADLVTGEFQFL 146 Query 123 LRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAY 182 LRK KG GG+ + D + PY D + ++ L+++L GG + Sbjct 147 LRK---KGFGGNRFR------DAPWDYNWTPYSDLMDALEADPCGKYSQSLLKKLVGGDF 197 Query 183 TRYVDNNFCGPDGYPLECIKDLLARAG--KASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 T +D CG +G P+ L+A G K + +E D+ R + + + I W Sbjct 198 TP-IDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDSDRYI-VFKNKLYRIVW 255 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +R + +Y Q+ F + + DT + P F + S I+ I P + + Sbjct 256 NVQRKDVAYSKQSAFTMNSIVQLDTME-DVPRHSFTIGSEIQVIAPSTAVQANGHLNLKQ 314 Query 301 RSVYPV---ASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATT 356 R +Y + +E N + S + C CG+ SW TG+ V+ CG + + Sbjct 315 RLLYAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVQGFACDCGAHYCANDVDLQS 374 Query 357 CGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT--IAFGGCVFSYV 414 G + +NAV+ CP + E +H+L + + K + G+T + +GG +++Y+ Sbjct 375 SGLVRKNAVLLTTCPCNKDGEC--KHTLPQLVSMMTDKCDVEVVGKTFILTYGGVIYAYM 432 Query 415 GCHNKCAYWVPRASA---NIG-CNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLN 470 GC +++PRA + IG TG G S+ L L++ + IN V +F L Sbjct 433 GCSGGTMHFIPRAKSCVSKIGDAIFTGCTGTWSKVCETANL-FLERAQHAINFVNEFVLT 491 Query 471 EEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSIL 530 E + +L+ ++S + + ++ + + G + VT G +G N+G Sbjct 492 ETVVALLSGTTSSIEELRDLCRNATFEKVRDYLTPRG-WIVTMGSYIEGVINVGAAGVCN 550 Query 531 SPLYA-----------FASEAARVVR--SIFSRTLETAQNSV--RVLQKAAITILDGISQ 575 + L A F AA + S TL+ +S+ RV I ++ Sbjct 551 AALNAPFIVLSGLGESFKKVAATPWKLCSSLRETLDHYADSITYRVF---PYDIPCDVTD 607 Query 576 YSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKF 635 Y+ L+D + T A V Y+ V QLT+ +F + + + + Sbjct 608 YTALLLDCAVLTGASA---YFVARYVDEKVEQLTNL----VFSSCQSAVAAFVQACMSTY 660 Query 636 KEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIII 695 K +F+ D + ++K +S V + ++ F +++K + L ++ Sbjct 661 KATAKFISDMFTLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLLHTTVSW 720 Query 696 GGAKLKAL--NLGETFVTHSKGLYRKCVKSR---EETGLLMPLK-APKEIIFLE----GE 745 G+KL ++ N ++ V S Y + R ++ L++P + K+I LE Sbjct 721 AGSKLPSVVYNGRDSLVFPSGTYYCVSTQGRSLQDQFDLVIPGDLSKKQIGILEPTPNST 780 Query 746 TLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCI-NGLMLLEIKDTEK-YCALA 803 T+ ++ T V + G L+P ++ + E V VG V I N + + ++D+E + L Sbjct 781 TVDKKINTNVVEVVVGQLEPTKEHSPELV----VGDYVIISNKIFVRSVEDSETVFYPLC 836 Query 804 PNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYT 861 + + F LKGGAP K V FG + E+ +SV++ +++ +D +L + + +T Sbjct 837 TDGKIVPTLFRLKGGAPPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFT 896 Query 862 VELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMY 921 VE V +F VV D VI+ L + G DL++++ Y+++ G+ +S M Sbjct 897 VEKDLPVKDFVDVVKDEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMT 956 Query 922 CSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLD 981 S P +E EEE D + E E ++ ED+ + A A+ P E+ + D L Sbjct 957 FSVNPVEEVEEECDDDYVEDEYLSEEMLVEEDEN-----SWAAAVEAVIPMEDVQLDTLV 1011 Query 982 DDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNS 1027 + + D +E T VEV +E + V EV S Sbjct 1012 AEIDVSEPADDVAEQASTEE----VEVPSACVLEASQVANAAEVES 1053 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 66/158 (42%), Positives = 102/158 (65%), Gaps = 0/158 (0%) Query 1031 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 1090 ++ L ++V + D + A+ + ++VNAAN +LKHGGG+A A+++A+ +Q ESDDY Sbjct 1192 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 1251 Query 1091 IATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + GPL VG S +L GH LA LHVVGP+ +DIQLLK Y+ FN++ ++++PL+S Sbjct 1252 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 1311 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 1188 AGIF +P SL + V T Y+ V + +Y+ L + Sbjct 1312 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDLAA 1349 >sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 2174 bits (5632), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1220/3120 (39%), Positives = 1808/3120 (58%), Gaps = 132/3120 (4%) Query 1391 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 1450 +C + A ++ + + + VD G ++Y Y+SK + +I N + + MP+ Sbjct 1379 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 1436 Query 1451 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 1510 GYVTHGL+L +A + ++ + VP ++S D V N + + +TPE+ FI T+ G Sbjct 1437 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 1494 Query 1511 YKDWSY-SGQSTQLGIEF---LKRGDKSVYYTSNPTTFHLDGEV-ITFDNL---KTLLSL 1562 Y W +G+ G+ + L D+++ Y N + + G++ + FD+L +T L+ Sbjct 1495 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADN-KFYVVKGQIALPFDSLEKCRTYLTS 1553 Query 1563 R--EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 R + + + V T+D +N T V++ + TY Q G + G+D++ P G+ Y+ Sbjct 1554 RAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYL 1613 Query 1621 LPN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATA 1679 N + + E Y T D +FL RY S L KKWKY +G+ S+K NNCY+ Sbjct 1614 ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVT 1673 Query 1680 LLTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH 1738 +L L + E+KF PALQ AY + + G++ F ALI+AY + T GE D + + Sbjct 1674 MLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSK 1733 Query 1739 ANLDS-CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYL 1797 A L + K V C CG Q TT G++A +Y+G S ++ + C CG + L Sbjct 1734 AELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQL 1793 Query 1798 VQQESPFVMMSAPPAQYELKHGTFTCASEYTG-------NYQCGHYKHITSKETL-YCID 1849 V+ +P++++S + + + +YT GHY H+ K+ L Y D Sbjct 1794 VEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYD 1853 Query 1850 GALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTE 1909 L+K+S+ K +TDV+Y + Y+ V Y LDG ++DP L +Y KD YFT+ Sbjct 1854 SGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTK 1913 Query 1910 QPI------DLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGY--KKPASRELKVTFFP 1961 +P+ ++ Y N+ + + N L G+ KP S++L +FFP Sbjct 1914 KPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFP 1973 Query 1962 DLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVET 2021 D GDV+ +Y Y P +K GA L KPI+W N+ + A K N +R ++ PV Sbjct 1974 DFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTL 2033 Query 2022 SNSFDVLKSEDAQGMDNLAC-EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGD---II 2076 N + VL+ Q ++ A ED KP S +V E+ + +++C V D + Sbjct 2034 ENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFV 2093 Query 2077 LKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 2135 P + + + +G DL A YVD N L + K N S + + T+ L+ + + Sbjct 2094 NDP--QGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGS 2151 Query 2136 DT----IANYAKPFLNKVVSTTTNIVT---RCLNRVCTNYMP------YFFTLLLQLC-- 2180 T I A + S T N+ T + L R+ N + F LL L Sbjct 2152 ITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLIL 2211 Query 2181 --TFTRSTN-SRIKASMPTTIAKNTVKS-VGKFCLEASFNYLKSPNFSKLINIIIWFLLL 2236 TF +S N S +K + V + V K C A+++ L F ++ LL Sbjct 2212 PFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVV-KFKRIDWKSTLRLLF 2270 Query 2237 SVC------------------LGSLIYSTAALGVLM------SNLGMPSYCTGYREGYLN 2272 +C L S + A G+L S LG+ S C G E Y N Sbjct 2271 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRN 2330 Query 2273 STNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAY 2331 + + +C+ S C+ CL G DSL Y + + IQ ++S+ ++ V E+ LAY Sbjct 2331 -VSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAY 2389 Query 2332 ILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFAS 2389 +L+T F VL L Q FFSY V++ S ++L+ V P+ +VR+Y F A Sbjct 2390 VLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLAC 2449 Query 2390 FYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHN 2449 +++ + Y HV++GC + C++CYKRNR TRVE +T+V G +R+FY+ ANGG FC HN Sbjct 2450 LWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHN 2509 Query 2450 WNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAG 2509 WNCV+CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + G Sbjct 2510 WNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREG 2569 Query 2510 QKTYERHSLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLM 2565 YER+ L +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ++ Sbjct 2570 ASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVL 2629 Query 2566 CQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVS 2625 +P+LL+D +V+ VGDS E+A KM D+YVN+F S F V +KL LVATA + + Sbjct 2630 SKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDD 2689 Query 2626 LDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMT 2684 V+ TF AAR V+SDVET +V+ L+ +++ D+++T + NNY+ +Y K +++ Sbjct 2690 FQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVA 2749 Query 2685 PRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTC 2744 DLG ID +A +N ++ N A IWN D+M LS+ L++QIR A +K N+PF+LT Sbjct 2750 TADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTT 2809 Query 2745 ATTRQVVNVVTTKIA---LKGG------KIVNNWLKQLIKVTLVFLFVAAIFYLITPVHV 2795 + R N+++ K + L GG K+ + K VTLV +A + YL P Sbjct 2810 SRLRSADNILSVKFSATKLSGGAPKWLLKLRDFTWKSYCVVTLVVFAMAVLSYLCLPAFN 2869 Query 2796 MSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQR-GGSYTNDKACPLI 2854 MS+ + I+ YK ++ G+ RDI +DTCFANK+ F WF++ GG + ND +CP+ Sbjct 2870 MSQVSFHEDRILTYKVVENGIIRDITPSDTCFANKYQSFSKWFNEHYGGLFNNDISCPVT 2929 Query 2855 AAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACV 2914 AVI G VP LP + L F+ RVF++ N+CYTP+ I Y F+ S CV Sbjct 2930 VAVIAGVAGARVPNLPANVAWVGRQIVL-FVSRVFASSNNVCYTPTAEIPYERFSDSGCV 2988 Query 2915 LAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSI-IQFPNTYLEGSV 2973 LA+ECT+F+DA GK PYCYD VL G+ AY+ ++P RY + D + I+FP E ++ Sbjct 2989 LASECTLFRDAEGKINPYCYDPTVLPGASAYDQMKPHVRYDMYDSDMYIKFPEVVFESTL 3048 Query 2974 RVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTP 3033 R+ T + YCR G+CE + GVC++T+G W + ND+Y + PGV+CG + +++ + Sbjct 3049 RITKTLATRYCRFGSCEDANEGVCITTNGSWAIYNDHYANKPGVYCGDNYFDIVRRLGLS 3108 Query 3034 LIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLC 3093 L QP+ +S S+ G ++ I +T YY + +RA +Y+ L++ LC Sbjct 3109 LFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVAVAAALLNSLCLC 3168 Query 3094 LTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHF 3153 L Y+ +Y Y TFYLT + +F+ H+ W VMF +VP W+ AYI+ + +H Sbjct 3169 FVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMVFAYIVGVCLRHL 3228 Query 3154 YWFFSNYLKRRV-VF-NGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALY 3211 W + + K+ V VF +G +F++AA F++NK+ Y+ LR+ + YNRYL+++ Sbjct 3229 LWVMAYFSKKHVEVFTDGKLNCSFQDAAANIFVINKDTYVALRNSI--TQDSYNRYLSMF 3286 Query 3212 NKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAF 3271 NKYKY+SGAMDT SYREA+ HL KAL +S +GSDVL+QPP S+TS+VLQSG KMA Sbjct 3287 NKYKYYSGAMDTASYREASAAHLCKALQVYSETGSDVLFQPPNCSVTSSVLQSGLVKMAA 3346 Query 3272 PSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLV 3331 PSG VE CMVQVTCG+ TLNGLWLD+ V+CPRHV+C ++ + +PNY+ LL+ K+N +F+V Sbjct 3347 PSGVVENCMVQVTCGSMTLNGLWLDNYVWCPRHVMCPADQLSDPNYDALLVSKTNLSFIV 3406 Query 3332 Q---AGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3388 Q LRV+GH+M +LKL V++ANP+TP Y F ++PG +FSVLACYNG P+GV Sbjct 3407 QKNVGAPANLRVVGHTMVGTLLKLTVESANPQTPAYTFTTVKPGASFSVLACYNGRPTGV 3466 Query 3389 YQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPF 3448 + MR N TIKGSFL GSCGSVG+ + + ++FCYMH MEL G H G +G YG F Sbjct 3467 FMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHTGCAFDGVMYGAF 3526 Query 3449 VDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQ 3507 DRQ Q +D T+N++AWLYAA++NG WF+ T + FN AM + E + Sbjct 3527 EDRQVHQVQLSDKYCTINIVAWLYAAILNGCNWFVKPNKTGIATFNEWAMSNQFTEFIGT 3586 Query 3508 DHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVT 3567 VD+L + +TG++V + ++ + L G G+TILG+++LEDEFTP DV Q GV Sbjct 3587 QSVDML---AHKTGVSVEQLLYAI-QTLHKGFQGKTILGNSMLEDEFTPDDVNMQVMGVV 3642 Query 3568 FQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM 3627 QS VKR G HWL T+L + + +Q T+++++ +L+E L ++ + A M+ Sbjct 3643 MQSGVKRISYGLVHWLFTTLLLAYVATLQLTKFTIWNYLFEVIPLQLTPLVLCVMACVML 3702 Query 3628 FVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLDMVDTSLSGFKLKDCV 3683 VKHKH FL LFLLP+ + Y N+VY P +S ++ + WL+ + D Sbjct 3703 TVKHKHTFLTLFLLPTAICLTYANIVYEPQTPVSSALIAVANWLNPASVYMRTTH-TDLG 3761 Query 3684 MYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSN 3743 +Y S L ++ R + + L + + Y G+ ++ + ++TS+ Sbjct 3762 VYLSLCFALAVVVRRLYRPNASNLALALGSAMVWFYTYTTGDC-SSPLTYLMFLTTLTSD 3820 Query 3744 YSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 Y+ V + +A+ + Y P ++ ++L+Y +GYFCT YFG+F LLN Sbjct 3821 YTVTVFLAVNVAKFFARVVFLYAPHAGFIFPEVKLVLLMYLAVGYFCTVYFGVFSLLNLK 3880 Query 3804 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMS 3863 R+ LGVYDY VSTQEFRY+ GL P+NS +A +LN+KL+G+GG PCIK+A+VQSK++ Sbjct 3881 LRVPLGVYDYTVSTQEFRYLTGNGLHAPRNSWEALRLNMKLIGIGGTPCIKIASVQSKLT 3940 Query 3864 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3923 D+KCTSVVLLSVLQQL +E++SK WA CV+LHNDIL A D TEAF+ V L + L+S Sbjct 3941 DLKCTSVVLLSVLQQLHLEANSKAWAHCVKLHNDILAATDPTEAFDNFVCLFATLMSFSA 4000 Query 3924 AVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLKK 3982 VD+ L ++LD+ + LQA SEFS L SYA AQ +Y++A+ +GD S VLK L+K Sbjct 4001 NVDLEALASDLLDHPSVLQATLSEFSHLASYAELEAAQSSYQKALNSGDASPQVLKALQK 4060 Query 3983 SLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDN 4042 ++N+AK+ +++D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDN Sbjct 4061 AVNIAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDN 4120 Query 4043 DALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVV 4102 D LN +I+NAR+GCVPL+++PL + KL VVIPD + + +YA ALW+I + Sbjct 4121 DVLNGVISNARNGCVPLSVVPLCASNKLRVVIPDITIWNKVVTWPSLSYAGALWDISLIN 4180 Query 4103 DADSKIVQLSEISMDNSPNLAWPLIVTALR-ANSAVKLQNNELSPVALRQMSCAAGTTQT 4161 + D ++V+ S+++ N +L WPL++ R A+SAV LQNNE+ P L+ M +AG Sbjct 4181 NVDGEVVKSSDVTETNE-SLTWPLVLECTRAASSAVTLQNNEIRPSGLKTMVVSAGIDHA 4239 Query 4162 ACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPK 4221 C + ++LAYY +G + ++ +LS+ LKWA+ DG I EL+PPC+F+ PK Sbjct 4240 NC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRDGFVNI--ELQPPCKFLIAGPK 4296 Query 4222 GPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYK 4281 GP+V+YLYF+K LNNL+RG +LG +AATVRLQAG+ TE NS+VLS F+VD KAY Sbjct 4297 GPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQAGSNTEFAINSSVLSAVTFSVDPGKAYL 4356 Query 4282 DYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKG 4341 D++ +GG P+TNCVKML TGTG A++V PEAN DQ+++GGAS CLYCR HI+HP+ G Sbjct 4357 DFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPEANADQDTYGGASVCLYCRAHIEHPDVTG 4416 Query 4342 FCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 C KGK+VQ+P DPVGF L+NT C VC W G+GC+CD LR + + +FLN Sbjct 4417 VCKFKGKFVQVPLH-IRDPVGFCLQNTPCNVCQFWIGHGCNCDALRGTTIPQSKDSNFLN 4475 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 248/1066 (23%), Positives = 444/1066 (42%), Gaps = 91/1066 (9%) Query 13 HVQLSLPVLQVRDVLVR---GFGDSVEEVLSEARQHLKDGTCGLV--EVEKGVLPQLEQP 67 HV L + D++++ F D E + L G+ L + KG + L P Sbjct 28 HVSLKASLCDAGDLVLKISPWFMDG-ESAYKHVSEQLSKGSKLLFVPQTLKGFIRHLPGP 86 Query 68 YVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETL-----GVLVPHVGEIPVAYRKVL 122 V++ MV +A G G TL G+ P ++ + L Sbjct 87 RVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQGKRVGMFFPFDADLVTGEFQFL 146 Query 123 LRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAY 182 LRK KG GG+ + D + PY D + ++ L+++L GG + Sbjct 147 LRK---KGFGGNRFR------DAPWDYNWTPYSDLMDALEADPCGKYSQSLLKKLVGGDF 197 Query 183 TRYVDNNFCGPDGYPLECIKDLLARAG--KASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 T +D CG +G P+ L+A G K + +E D+ R + + + I W Sbjct 198 TP-IDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDSDRYI-VFKNKLYRIVW 255 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +R + +Y Q+ F + + DT + P F + S I+ I P + + Sbjct 256 NVQRKDVAYSKQSAFTMNSIVQLDTME-DVPRHSFTIGSEIQVIAPSTAVQANGHLNLKQ 314 Query 301 RSVYPV---ASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GATT 356 R +Y + +E N + S + C CG+ SW TG+ V+ CG + + Sbjct 315 RLLYAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVQGFACDCGAHYCANDVDLQS 374 Query 357 CGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT--IAFGGCVFSYV 414 G + +NAV+ CP + E +H+L + + K + G+T + +GG +++Y+ Sbjct 375 SGLVRKNAVLLTTCPCNKDGEC--KHTLPQLVSMMTDKCDVEVVGKTFILTYGGVIYAYM 432 Query 415 GCHNKCAYWVPRASANIG----CNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLN 470 GC +++PRA + + TG G S+ L L++ + IN V +F L Sbjct 433 GCSGGTMHFIPRAKSCVSKIGDAIFTGCTGTWSKVCETANL-FLERAQHAINFVNEFVLT 491 Query 471 EEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSIL 530 E + +L+ ++S + + ++ + + G + VT G +G N+G Sbjct 492 ETVVALLSGTTSSIEELRDLCRNATFEKVRDYLTPRG-WIVTMGSYIEGVINVGAAGVCN 550 Query 531 SPLYA-----------FASEAARVVR--SIFSRTLETAQNSV--RVLQKAAITILDGISQ 575 + L A F AA + S TL+ +S+ RV I ++ Sbjct 551 AALNAPFIVLSGLGESFKKVAATPWKLCSSLRETLDHYADSITYRVF---PYDIPCDVTD 607 Query 576 YSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKF 635 Y+ L+D + T A V Y+ V QLT+ +F + + + + Sbjct 608 YTALLLDCAVLTGASA---YFVARYVDEKVEQLTNL----VFSSCQSAVAAFVQACMSTY 660 Query 636 KEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIII 695 K +F+ D + ++K +S V + ++ F +++K + L ++ Sbjct 661 KATAKFISDMFTLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLLHTTVSW 720 Query 696 GGAKLKAL--NLGETFVTHSKGLYRKCVKSR---EETGLLMPLK-APKEIIFLE----GE 745 G+KL ++ N ++ V S Y + R ++ L++P + K+I LE Sbjct 721 AGSKLPSVVYNGRDSLVFPSGTYYCVSTQGRSLQDQFDLVIPGDLSKKQIGILEPTPNST 780 Query 746 TLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCI-NGLMLLEIKDTEK-YCALA 803 T+ ++ T V + G L+P ++ + E V VG V I N + + ++D+E + L Sbjct 781 TVDKKINTNVVEVVVGQLEPTKEHSPELV----VGDYVIISNKIFVRSVEDSETVFYPLC 836 Query 804 PNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSAYT 861 + + F LKGGAP K V FG + E+ +SV++ +++ +D +L + + +T Sbjct 837 TDGKIVPTLFRLKGGAPPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFT 896 Query 862 VELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMY 921 VE V +F VV D VI+ L + G DL++++ Y+++ G+ +S M Sbjct 897 VEKDLPVKDFVDVVKDEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMT 956 Query 922 CSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLD 981 S P +E EEE D + E E ++ ED+ + A A+ P E+ + D L Sbjct 957 FSVNPVEEVEEECDDDYVEDEYLSEEMLVEEDEN-----SWAAAVEAVIPMEDVQLDTLV 1011 Query 982 DDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNS 1027 + + D +E T VEV +E + V EV S Sbjct 1012 AEIDVSEPADDVAEQASTEE----VEVPSACVLEASQVANAAEVES 1053 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 66/158 (42%), Positives = 102/158 (65%), Gaps = 0/158 (0%) Query 1031 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 1090 ++ L ++V + D + A+ + ++VNAAN +LKHGGG+A A+++A+ +Q ESDDY Sbjct 1192 HIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDY 1251 Query 1091 IATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + GPL VG S +L GH LA LHVVGP+ +DIQLLK Y+ FN++ ++++PL+S Sbjct 1252 VNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLIS 1311 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 1188 AGIF +P SL + V T Y+ V + +Y+ L + Sbjct 1312 AGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDLAA 1349 >sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1 Length=4383 Score = 1883 bits (4877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1076/2890 (37%), Positives = 1633/2890 (57%), Gaps = 125/2890 (4%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + + TVD +N + V + +G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1868 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1924 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1925 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK + I D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTI--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1984 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 2041 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 2042 EDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVD 2101 D K E+ I L K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAK-------ESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLT 2080 Query 2102 NSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIV 2157 ++ N+LS + + T+ G+ V S+P D + KP N VV N + Sbjct 2081 GCRYVVRTANDLSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKI 2138 Query 2158 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 2217 + C N ++ + F LL + K T +A + + +F Sbjct 2139 SACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLT 2189 Query 2218 LKSPNFSKLINII--IWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTN 2275 K ++ II I+ L + ++I+S L +G G ++ ST Sbjct 2190 FKWSVVARGACIIATIFLLWFNFIYANVIFSDFYL----PKIGFLPTFVGKIAQWIKSTF 2245 Query 2276 --VTIA------------TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAF 2321 VTI YC GSI C CL+G D LD Y +++ +Q ++ D AF Sbjct 2246 SLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRAF 2300 Query 2322 -------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLV 2372 +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLA 2360 Query 2373 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 2432 M P +R YI ASF ++ + HV GC+ C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 2433 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 2492 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 2493 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2552 V + L++++ GQ+TY+ + S FV+ NL + KG ++V+V + + +++ Sbjct 2481 DVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKA 2538 Query 2553 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 2612 + +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L L Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 2613 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 2671 +ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 2672 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 2731 N + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2659 NLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKK 2718 Query 2732 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLIT 2791 A K L KLT V+V+TT +LKGG + + ++ ++LV F+ + + Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLV-CFIG--LWCLM 2775 Query 2792 PVHVMSKHTDFSSEI-IGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTND 2848 P + + K +DF + YK +D GV RD++ D CFANK FD W+ G Y+N Sbjct 2776 PTYTVHK-SDFQLPVYTSYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNS 2834 Query 2849 KACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDF 2908 ACP++ AV+ +++G V +P +LR LHF+ SA G CYTP I Y++F Sbjct 2835 MACPIVVAVVDQDLGSTVFNVPTKVLRY-GYHVLHFITHALSADGVQCYTPHSQISYSNF 2893 Query 2909 ATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDG-SIIQFPNT 2967 S CVL++ CT+F A G P PYCY +++ + Y SL P RY L + I+FP Sbjct 2894 YASGCVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEV 2953 Query 2968 YLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLL 3027 EG VR+V T YCR G CE ++ G+C + +G WVLNNDYYRSLPG FCG D +L+ Sbjct 2954 LREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLI 3013 Query 3028 TNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLM 3087 +F L QP+ L ++AS +AG I+A++V + YY ++ +RAFG+Y+ +V N +++ + Sbjct 3014 YQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCV 3073 Query 3088 SFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIIC 3147 +F +L + VY L VY++ Y Y T Y +++S + H+QW+VM+ ++P W + YI Sbjct 3074 NFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISV 3133 Query 3148 ISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRY 3207 + + H +W F+ RR+ + S TFEE AL TF++ K+ Y KL++ L +NRY Sbjct 3134 VVSNHAFWVFA--YCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNRY 3189 Query 3208 LALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNS-GSDVLYQPPQTSITSAVLQSGF 3266 L+LYNKY+Y+SG MDT +YREAAC LAKA++ F+N+ GSDVLYQPP S++++ LQSG Sbjct 3190 LSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGI 3249 Query 3267 RKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSN 3326 KM P+ KVE C+V VT G TLNGLWLDD VYCPRHVIC++ DM NP+Y +LL R ++ Sbjct 3250 VKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTS 3309 Query 3327 HNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPS 3386 +F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P Sbjct 3310 SDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQ 3369 Query 3387 GVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYG 3446 G + MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G+FYG Sbjct 3370 GAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYG 3429 Query 3447 PFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLT 3506 P+ D Q Q D +VN +AWLYAA++N WF+ ++ DFN+ A+ + + Sbjct 3430 PYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVK 3489 Query 3507 QDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGV 3566 D V + L++ TG+++ + A++K L+NG GR I+GS EDE TP DV +Q +G+ Sbjct 3490 SDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGI 3546 Query 3567 TFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAM 3626 QS R +KG W++ + ++ +W++F ++ N L + + + AM Sbjct 3547 KLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTN-MLSITFCALCVISLAM 3605 Query 3627 MFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMY 3685 + VKHKH +L ++++P L T+ Y N +V ++ + WL S+ + D V+Y Sbjct 3606 LLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIY 3664 Query 3686 ASAVVL-LILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNY 3744 +++ ++ +T R++ D + + V+++V Y G+ L++ I + ++ S+ Y Sbjct 3665 GMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTY 3722 Query 3745 SGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYF 3804 + M A+ ++ V ++F ++ +++ Y F+GY +CY+GLF L+N F Sbjct 3723 TWTTALSMAAAK-VIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLF 3781 Query 3805 RLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSD 3864 R+ LGVY+Y +S QE RYMN+ GL PPKNS +A LN KLLG+GG P I+V+ QSK++D Sbjct 3782 RMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTD 3841 Query 3865 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3924 VKC +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + A Sbjct 3842 VKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAA 3901 Query 3925 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVL 3977 VD I ++C++ + LQA+ SEF ++ S+ + A++ ++A ++G + + L Sbjct 3902 VDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQL 3961 Query 3978 KKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4037 K+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 3962 KQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4021 Query 4038 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWE 4097 RKLDN ALN+I++NA GCVPLN IP A L +++PD + Y D TYA +W+ Sbjct 4022 RKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQ 4081 Query 4098 IQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCA 4155 IQ + D+D QL+EIS D + WPL++ A R N SA LQNNEL P L+ Sbjct 4082 IQTIQDSDGTNKQLNEISDDCN----WPLVIIANRHNEVSATVLQNNELMPAKLKTQVVN 4137 Query 4156 AGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRF 4215 +G QT T YYN + G+ V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4138 SGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKF 4194 Query 4216 VTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVD 4275 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VD Sbjct 4195 TVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVD 4254 Query 4276 AAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHID 4335 K Y D++ GG PI NCVKMLC H GTG AITV P+A +Q+S+GGAS C+YCR ++ Sbjct 4255 PKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVE 4314 Query 4336 HPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSAD 4395 HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D Sbjct 4315 HPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD 4372 Query 4396 AQSFLNGFAV 4405 +FLNGF V Sbjct 4373 T-NFLNGFGV 4381 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + T V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 208/935 (22%), Positives = 356/935 (38%), Gaps = 168/935 (18%) Query 69 VFIKRS---DARTAPHGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL-- 122 +F +RS R A + HV +L + + G+ +G +G+ +G ++P + +PV RK + Sbjct 130 LFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVP 187 Query 123 ----LRKNGNKGA-------GGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTR 171 LRK G KGA GG + + K D D + +P F + Sbjct 188 WVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKK---------AY 238 Query 172 ELMRELNGGAYTRYVDNNFCG-----PDGYPLECIKDLLARAGKASCTL-SEQLDFIDTK 225 L+R G YVD C DG LE D + KA + S++L F Sbjct 239 ALIRGYRGVKPLLYVDQYGCDYTGGLADG--LEAYADKTLQEMKALFPIWSQELPF---- 292 Query 226 RGVYCCREHEHEIAWYTERSEK-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVF 275 + +AW+ R + LQ+ I+ D +G P V+ Sbjct 293 ---------DVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVY 343 Query 276 PLNSIIKTIQPRVEKKKLDGFM--------GRIRSVYPVASPNECNQMCLSTLMKC--DH 325 +SII + + L M + + Y V +C + + C D Sbjct 344 ADDSII------LRQHNLVDIMSCFYMEADAVVNAFYGV-DLKDCGFVMQFGYIDCEQDL 396 Query 326 CGETSWQTGDFVKA-TCEFCGTENLTKEG-ATTCGYLPQNAVVKIYCPACHNSEVGPEHS 383 C W G+ + C CG T + A + G LP N V+ A + G + S Sbjct 397 CDFKGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDS 455 Query 384 LAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANI----GCNHTGVV 439 Y G + FGGCV+ + N W+P +++ G +TGVV Sbjct 456 FTLY------------GQTVVYFGGCVY-WSPARN---IWIPILKSSVKSYDGLVYTGVV 499 Query 440 GEGSEGLNDNLL-EILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKA 498 G + NL+ + L + V + G+ E + + S L+ Sbjct 500 GCKAIVKETNLICKALYLDYVQ-HKCGNLHQRELLGV---------SDVWHKQLLLNRGV 549 Query 499 FKQIVESCGNFKVTKGKAKKGAWNI---GEQKSILSPLY-----------AFASEAARVV 544 +K ++E+ F + + K + + G +L L AF A ++ Sbjct 550 YKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKIC 609 Query 545 RSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGG 604 ++ S++ E S+ L AAI L+ +++D SD T+ Sbjct 610 HAVVSKSKELLDVSLDSLS-AAIHYLNS------KIVDLAQHFSDFGTS-------FVSK 655 Query 605 VVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQI 664 +V + T+ L VL + + F+++ I ++ S V Sbjct 656 IVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKN---IPRYASA-----VAQAF 707 Query 665 VTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSR 724 + AK + +S++ F + I + G+K+ + G + HS L Sbjct 708 RSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERG---LLHSSQL------PL 758 Query 725 EETGLLMP---LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGT 781 + L MP KA ++ I+L+G + V + T L P E P V Sbjct 759 DVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYS-----EPPKVAD 813 Query 782 PVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSV 839 +CI + + + Y + + + A +VTF + TV E+ K++ Sbjct 814 KICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTI 873 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPLGID 896 + +ELD+ + +LN C + V+ ++ EF VV DA+ + L P EL + Sbjct 874 KVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDAIEEKLSPCKELEGVGAKVSAF 933 Query 897 LDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 931 L + + +LFDE+GE LAS +YC+F P++D+ Sbjct 934 LQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDD 968 >sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1 Length=4383 Score = 1882 bits (4874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1076/2890 (37%), Positives = 1634/2890 (57%), Gaps = 125/2890 (4%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1868 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1924 Y +N T K V TY LD V E +P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1925 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK + I D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTI--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1984 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 2041 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 2042 EDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVD 2101 D K E+ I L K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAK-------ESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLT 2080 Query 2102 NSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIV 2157 ++ N LS + + T+ G+ V S+P D + KP N VV N + Sbjct 2081 GCRYVVRTANALSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKI 2138 Query 2158 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 2217 + C N ++ + F LL + K T +A + + +F Sbjct 2139 SACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLT 2189 Query 2218 LKSPNFSKLINII--IWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTN 2275 K ++ II I+ L + ++I+S L +G G ++ ST Sbjct 2190 FKWSVVARGACIIATIFLLWFNFIYANVIFSDFYL----PKIGFLPTFVGKIAQWIKSTF 2245 Query 2276 --VTIA------------TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAF 2321 VTI YC GSI C CL+G D LD Y +++ +Q ++ D AF Sbjct 2246 SLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRAF 2300 Query 2322 -------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLV 2372 +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLA 2360 Query 2373 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 2432 M P +R YI ASF ++ + HV GC+ C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 2433 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 2492 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 2493 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2552 V + L++++ GQ+TY+ + S FV+ NL + KG ++V+V + + +++ Sbjct 2481 DVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKA 2538 Query 2553 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 2612 + +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L L Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 2613 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 2671 +ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 2672 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 2731 N + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2659 NLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKK 2718 Query 2732 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLIT 2791 A K L KLT V+V+TT +LKGG + + ++ ++LV F+ + + Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLV-CFIG--LWCLM 2775 Query 2792 PVHVMSKHTDFSSEIIG-YKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTND 2848 P + + K +DF + YK +D GV RD++ D CFANK FD W+ G Y+N Sbjct 2776 PTYTVHK-SDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNS 2834 Query 2849 KACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDF 2908 ACP++ AV+ +++G V +P +LR LHF+ SA G CYTP I Y++F Sbjct 2835 MACPIVVAVVDQDLGSTVFNVPTKVLRY-GYHVLHFITHALSADGVQCYTPHSQISYSNF 2893 Query 2909 ATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDG-SIIQFPNT 2967 S CVL++ CT+F A G P PYCY +++ + Y SL P RY L + I+FP Sbjct 2894 YASGCVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEV 2953 Query 2968 YLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLL 3027 EG VR+V T YCR G CE ++ G+C + +G WVLNNDYYRSLPG FCG D +L+ Sbjct 2954 LREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLI 3013 Query 3028 TNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLM 3087 +F L QP+ L ++AS +AG I+A++V + YY ++ +RAFG+Y+ +V N +++ + Sbjct 3014 YQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCV 3073 Query 3088 SFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIIC 3147 +F +L + VY L VY++ Y Y T Y +++S + H+QW+VM+ ++P W + YI Sbjct 3074 NFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISV 3133 Query 3148 ISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRY 3207 + + H +W F+ RR+ + S TFEE AL TF++ K+ Y KL++ L +NRY Sbjct 3134 VVSNHAFWVFA--YCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNRY 3189 Query 3208 LALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNS-GSDVLYQPPQTSITSAVLQSGF 3266 L+LYNKY+Y+SG MDT +YREAAC LAKA++ F+N+ GSDVLYQPP S++++ LQSG Sbjct 3190 LSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGI 3249 Query 3267 RKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSN 3326 KM P+ KVE C+V VT G TLNGLWLDD VYCPRHVIC++ DM NP+Y +LL R ++ Sbjct 3250 VKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTS 3309 Query 3327 HNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPS 3386 +F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P Sbjct 3310 SDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQ 3369 Query 3387 GVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYG 3446 G + MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G+FYG Sbjct 3370 GAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYG 3429 Query 3447 PFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLT 3506 P+ D Q Q D +VN +AWLYAA++N WF+ ++ DFN+ A+ + + Sbjct 3430 PYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVK 3489 Query 3507 QDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGV 3566 D V + L++ TG+++ + A++K L+NG GR I+GS EDE TP DV +Q +G+ Sbjct 3490 SDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGI 3546 Query 3567 TFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAM 3626 QS R +KG W++ + ++ +W++F ++ N L + + + AM Sbjct 3547 KLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTN-MLSITFCALCVISLAM 3605 Query 3627 MFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMY 3685 + VKHKH +L ++++P L T+ Y N +V ++ + WL S+ + D V+Y Sbjct 3606 LLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIY 3664 Query 3686 ASAVVL-LILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNY 3744 +++ ++ +T R++ D + + V+++V Y G+ L++ I + ++ S+ Y Sbjct 3665 GMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTY 3722 Query 3745 SGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYF 3804 + M A+ ++ V ++F ++ +++ Y F+GY +CY+GLF L+N F Sbjct 3723 TWTTALSMAAAK-VIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLF 3781 Query 3805 RLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSD 3864 R+ LGVY+Y +S QE RYMN+ GL PPKNS +A LN KLLG+GG P I+V+ QSK++D Sbjct 3782 RMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTD 3841 Query 3865 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3924 VKC +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + A Sbjct 3842 VKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAA 3901 Query 3925 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVL 3977 VD I ++C++ + LQA+ SEF ++ S+ + A++ ++A ++G + + L Sbjct 3902 VDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQL 3961 Query 3978 KKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4037 K+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 3962 KQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4021 Query 4038 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWE 4097 RKLDN ALN+I++NA GCVPLN IP A L +++PD + Y D TYA +W+ Sbjct 4022 RKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQ 4081 Query 4098 IQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCA 4155 IQ + D+D QL+EIS D + WPL++ A R N SA LQNNEL P L+ Sbjct 4082 IQTIQDSDGTNKQLNEISDDCN----WPLVIIANRHNEVSATVLQNNELMPAKLKTQVVN 4137 Query 4156 AGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRF 4215 +G QT T YYN + G+ V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4138 SGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKF 4194 Query 4216 VTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVD 4275 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VD Sbjct 4195 TVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVD 4254 Query 4276 AAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHID 4335 K Y D++ GG PI NCVKMLC H GTG AITV P+A +Q+S+GGAS C+YCR ++ Sbjct 4255 PKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVE 4314 Query 4336 HPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSAD 4395 HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D Sbjct 4315 HPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD 4372 Query 4396 AQSFLNGFAV 4405 +FLNGF V Sbjct 4373 T-NFLNGFGV 4381 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + T V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 207/933 (22%), Positives = 355/933 (38%), Gaps = 164/933 (18%) Query 69 VFIKRS---DARTAPHGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL-- 122 +F +RS R A + HV +L + + G+ +G +G+ +G ++P + +PV RK + Sbjct 130 LFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVP 187 Query 123 ----LRKNGNKGA-------GGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTR 171 LRK G KGA GG + + K D D + +P F + Sbjct 188 WVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKK---------AY 238 Query 172 ELMRELNGGAYTRYVDNNFC---GPDGYPLECIKDLLARAGKASCTL-SEQLDFIDTKRG 227 L+R G YVD C G LE D + KA + S++L F Sbjct 239 ALIRGYRGVKPLLYVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPF------ 292 Query 228 VYCCREHEHEIAWYTERSEK-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPL 277 + +AW+ R + LQ+ I+ D +G P V+ Sbjct 293 -------DVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYAD 345 Query 278 NSIIKTIQPRVEKKKLDGFM--------GRIRSVYPVASPNECNQMCLSTLMKC--DHCG 327 +SII + + L M + + Y V +C + + C D C Sbjct 346 DSII------LRQHNLVDIMSCFYMEADAVVNAFYGV-DLKDCGFVMQFGYIDCEQDLCD 398 Query 328 ETSWQTGDFVKA-TCEFCGTENLTKEG-ATTCGYLPQNAVVKIYCPACHNSEVGPEHSLA 385 W G+ + C CG T + A + G LP N V+ A + G + S Sbjct 399 FKGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFT 457 Query 386 EYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANI----GCNHTGVVGE 441 Y G + FGGCV+ + N W+P +++ G +TGVVG Sbjct 458 LY------------GQTVVYFGGCVY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGC 501 Query 442 GSEGLNDNLL-EILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFK 500 + NL+ + L + V + G+ E + + S L+ +K Sbjct 502 KAIVKETNLICKALYLDYVQ-HKCGNLHQRELLGV---------SDVWHKQLLLNRGVYK 551 Query 501 QIVESCGNFKVTKGKAKKGAWNI---GEQKSILSPLY-----------AFASEAARVVRS 546 ++E+ F + + K + + G +L L AF A ++ + Sbjct 552 PLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHA 611 Query 547 IFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVV 606 + S++ E S+ L AAI L+ +++D SD T+ +V Sbjct 612 VVSKSKELLDVSLDSLS-AAIHYLNS------KIVDLAQHFSDFGTS-------FVSKIV 657 Query 607 QLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVT 666 + T+ L VL + + F+++ I ++ S V + Sbjct 658 HFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKN---IPRYASA-----VAQAFRS 709 Query 667 CAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREE 726 AK + +S++ F + I + G+K+ + G + HS L + Sbjct 710 VAKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERG---LLHSSQL------PLDV 760 Query 727 TGLLMP---LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPV 783 L MP KA ++ I+L+G + V + T L P E P V + Sbjct 761 YDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYS-----EPPKVADKI 815 Query 784 CINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNI 841 CI + + + Y + + + A +VTF + TV E+ K++ + Sbjct 816 CIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKV 875 Query 842 TFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPLGIDLD 898 +ELD+ + +LN C + V+ ++ EF VV DA+ + L P EL + L Sbjct 876 FYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQ 935 Query 899 EWSMATYYLFDESGEFKLASHMYCSFYPPDEDE 931 + + +LFDE+GE LAS +YC+F P++D+ Sbjct 936 KLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDD 968 >sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus OC43 OX=31631 GN=1a PE=1 SV=1 Length=4383 Score = 1872 bits (4849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1079/2894 (37%), Positives = 1629/2894 (56%), Gaps = 133/2894 (5%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLH 1684 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 L F Q+A+ R+G A F AL+LA G+ D R+ + +F +L Sbjct 1685 LTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 + CK CG +Q G++AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S PA +L G + A+ + G+ GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFIGD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCL 1860 Query 1868 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1924 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1925 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK + + D LN G+ E K+T +P GDVV + Y +++G Sbjct 1920 YTNFKLIGHTV--CDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGC 1977 Query 1984 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 2041 KP++W H + N TY ++ + N FDVLK +D + + Sbjct 1978 ITFGKPVIWLSHEKASLNSLTY----------FNRPLLVDDNKFDVLKVDDVDDSGDSSE 2027 Query 2042 EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 K E +++ ++K +V +I+ + K + + D+ ++ Sbjct 2028 SGAKETKEINIIKLSGVKKPF--------KVEDSVIVNDDTSETKYVKSLSIVDVYDMWL 2079 Query 2101 DNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 2156 ++ N LSR + + T+ G+ V S+P D + KP +N VV N Sbjct 2080 TGCKYVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPAVN-VVKAVRNK 2137 Query 2157 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 2216 + C N ++ + F LL + K T IA + + +F Sbjct 2138 TSACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEIASKLTCKLVALAFKNAFL 2188 Query 2217 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 2260 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLV 2248 Query 2261 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 2320 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 2321 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 2371 F +V E ++Y L+T +FY L +Q+ ++ F+ ++ W L++ L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVAL 2359 Query 2372 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 2431 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 2432 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2491 R + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 2492 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 2551 V S+ L++D+ GQ+ Y+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 2552 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 2611 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 2612 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 2670 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 2671 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 2730 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F S + +++ Sbjct 2658 NNLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLK 2717 Query 2731 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLI 2790 A K L KLT V+V+TT +LKGG + + ++ ++LV F+ + + Sbjct 2718 KACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLV-CFIG--LWCL 2774 Query 2791 TPVHVMSKHTDFSSEIIG-YKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTN 2847 P + + K +DF + YK +D GV RD++ D CFANK FD W+ G Y+N Sbjct 2775 MPTYTVHK-SDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSN 2833 Query 2848 DKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTD 2907 ACP++ AVI ++ G V +P +LR LHF+ SA G CYTP I Y++ Sbjct 2834 SMACPIVVAVIDQDFGSTVFNVPTKVLRY-GYHVLHFITHALSADGVQCYTPHSQISYSN 2892 Query 2908 FATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDG-SIIQFPN 2966 F S CVL++ CT+F A G P PYCY +++ + Y SL P RY L + I+FP Sbjct 2893 FYASGCVLSSACTMFTMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPE 2952 Query 2967 TYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNL 3026 EG VRVV T YCR G CE ++ G+C + +G WVLNNDYYRSLPG FCG D +L Sbjct 2953 VLREGLVRVVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDL 3012 Query 3027 LTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFL 3086 + +F L QP+ L ++AS +AG I+A++V + YY ++ +RAFG+Y+ VV N +++ Sbjct 3013 IYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSVVFVNVIVWC 3072 Query 3087 MSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYII 3146 ++F +L + VY L VY++ Y Y T Y +++S + H+QW+VM+ ++P W + YI Sbjct 3073 VNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIA 3132 Query 3147 CISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNR 3206 + + H +W FS R++ + S TFEE AL TF++ K+ Y KL++ L +NR Sbjct 3133 VVVSNHAFWVFS--YCRKLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNR 3188 Query 3207 YLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNS-GSDVLYQPPQTSITSAVLQSG 3265 YL+LYNKY+Y+SG MDT +YREAAC LAKA++ F+N+ GSDVLYQPP S++++ LQSG Sbjct 3189 YLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSG 3248 Query 3266 FRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKS 3325 KM P+ KVE C+V VT G TLNGLWLDD VYCPRHVIC++ DM NP+Y +LL R + Sbjct 3249 IVKMVNPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVT 3308 Query 3326 NHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSP 3385 + +F V + L V+ + M+ C+L L V N +TPKY F ++PG+TF+VLA YNG P Sbjct 3309 SSDFTVLFDRLSLTVMSYQMRGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKP 3368 Query 3386 SGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFY 3445 G + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G+FY Sbjct 3369 QGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFY 3428 Query 3446 GPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL 3505 GP+ D Q Q D +VN LAWLYAA++N WF+ ++ DFN+ A+ + + Sbjct 3429 GPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNNCNWFIQSDKCSVEDFNVWALSNGFSQV 3488 Query 3506 TQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSG 3565 D V + L++ TG+++ + A++K L+NG GR I+GS EDE TP DV +Q +G Sbjct 3489 KSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAG 3545 Query 3566 VTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFA 3625 + QS R KGT W++ + ++ +W++F ++ N F + + + A Sbjct 3546 IKLQSKRTRLFKGTVCWIMASTFLFSCIITAFVKWTMFMYVTTNMF-SITFCALCVISLA 3604 Query 3626 MMFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVM 3684 M+ VKHKH +L +++ P L T+ Y N +V ++ + WL S+ + D V+ Sbjct 3605 MLLVKHKHLYLTMYITPVLFTLLYNNYLVVYKHTFRGYVYAWLSYYVPSVE-YTYTDEVI 3663 Query 3685 YASAVVL-LILMTARTVYDD---GARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISV 3740 Y +++ ++ +T R++ D V L++V +L YK G+ L++ I + ++ S+ Sbjct 3664 YGMLLLVGMVFVTLRSINHDLFSFIMFVGRLISVFSLWYK---GSNLEEEILL--MLASL 3718 Query 3741 TSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLL 3800 Y+ M +A+ ++ V ++F ++ ++L Y F+GY +CY+GLF L+ Sbjct 3719 FGTYTWTTVLSMAVAK-VIAKWVAVNVLYFTDIPQIKIVLLCYLFIGYIISCYWGLFSLM 3777 Query 3801 NRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQS 3860 N FR+ LGVY+Y +S QE RYMN+ GL PPKNS +A LN KLLG+GG P I+V+ QS Sbjct 3778 NSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQS 3837 Query 3861 KMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLS 3920 K++DVKC +VVLL+ LQ L V S+SKLW C LHN+IL D + AFEK+ LL VL + Sbjct 3838 KLTDVKCANVVLLNCLQHLHVASNSKLWHYCSTLHNEILATSDLSVAFEKLAQLLIVLFA 3897 Query 3921 MQGAVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS- 3973 AVD I ++C++ + LQA+ SEF ++ S+ + A++ ++A +G + Sbjct 3898 NPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARFSGSAN 3957 Query 3974 EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTML 4033 + LK+L+K+ N+AKS ++RD A+ +KLE+MAD A+T MYK+AR DK++KV SA+QTML Sbjct 3958 QQQLKQLEKACNIAKSAYERDRAVAKKLERMADLALTNMYKEARINDKKSKVVSALQTML 4017 Query 4034 FTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYAS 4093 F+M+RKLDN ALN+I++NA GCVPLN IP A L +++PD + Y D TYA Sbjct 4018 FSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLNIIVPDKSVYDQIVDNIYVTYAG 4077 Query 4094 ALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQ 4151 +W+IQ + D+D QL+EIS D + WPL++ A R N SA LQNNEL P L+ Sbjct 4078 NVWQIQTIQDSDGTNKQLNEISDDCN----WPLVIIANRYNEVSATVLQNNELMPAKLKI 4133 Query 4152 MSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEP 4211 +G QT T YYN + G+ V A+LSD+ LK+ + K DG + EL+P Sbjct 4134 QVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDP 4190 Query 4212 PCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCA 4271 PC+F KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CA Sbjct 4191 PCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCA 4250 Query 4272 FAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCR 4331 F+VD K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR Sbjct 4251 FSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCR 4310 Query 4332 CHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPML 4391 ++HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + + Sbjct 4311 ARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCRVCGFWRDGSCSCVS-TDTTV 4368 Query 4392 QSADAQSFLNGFAV 4405 QS D +FLNGF V Sbjct 4369 QSKDT-NFLNGFGV 4381 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV DI++ +K VK VVVN AN ++ HGGGVA A+ A E+ + + + Sbjct 1273 ITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKS 1332 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G G V +G L K L+VVGP+ + LL+ Y++FN ++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISA 1392 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 103/242 (43%), Gaps = 30/242 (12%) Query 715 GLYRKCVKSRE----ETGLL----MPL------------KAPKEIIFLEGETLPTEVLTE 754 G R C+ R+ E GLL +PL KA ++ I+L+G + Sbjct 732 GRRRICLSGRKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADS 791 Query 755 EVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFT 814 V + T L P E P V +CI + + + Y + + + + Sbjct 792 VVEVVTTSLTPCGYS-----EPPKVADKICIVDNVYMAKAGDKYYPVVVDDHVGLLDQAW 846 Query 815 LKGGAPTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFA 872 A +VTF + TV E+ K + + +ELD + +LN C + V+ ++ EF Sbjct 847 RVPCAGRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFY 906 Query 873 CVVADAVIKTLQPVSELL---TPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDE 929 VV DA+ + L P EL + L + +LFDE+GE A +YC+F P++ Sbjct 907 AVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPED 966 Query 930 DE 931 D+ Sbjct 967 DD 968 >sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 1871 bits (4847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1073/2886 (37%), Positives = 1631/2886 (57%), Gaps = 125/2886 (4%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1868 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1924 Y +N T K V TY LD V E +P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1925 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK + I D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTI--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1984 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 2041 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 2042 EDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVD 2101 D K E+ I L K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAK-------ESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLT 2080 Query 2102 NSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIV 2157 ++ N LS + + T+ G+ V S+P D + KP N VV N + Sbjct 2081 GCRYVVRTANALSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKI 2138 Query 2158 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 2217 + C N ++ + F LL + K T +A + + +F Sbjct 2139 SACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLT 2189 Query 2218 LKSPNFSKLINII--IWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTN 2275 K ++ II I+ L + ++I+S L +G G ++ ST Sbjct 2190 FKWSVVARGACIIATIFLLWFNFIYANVIFSDFYL----PKIGFLPTFVGKIAQWIKSTF 2245 Query 2276 --VTIA------------TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAF 2321 VTI YC GSI C CL+G D LD Y +++ +Q ++ D AF Sbjct 2246 SLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRAF 2300 Query 2322 -------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLV 2372 +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLA 2360 Query 2373 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 2432 M P +R YI ASF ++ + HV GC+ C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 2433 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 2492 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 2493 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2552 V + L++++ GQ+TY+ + S FV+ NL + KG ++V+V + + +++ Sbjct 2481 DVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKA 2538 Query 2553 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 2612 + +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L L Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 2613 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 2671 +ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 2672 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 2731 N + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2659 NLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKK 2718 Query 2732 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLIT 2791 A K L KLT V+V+TT +LKGG + + ++ ++LV F+ + + Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLV-CFIG--LWCLM 2775 Query 2792 PVHVMSKHTDFSSEIIG-YKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTND 2848 P + + K +DF + YK +D GV RD++ D CFANK FD W+ G Y+N Sbjct 2776 PTYTVHK-SDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNS 2834 Query 2849 KACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDF 2908 ACP++ AV+ +++G V +P +LR LHF+ SA G CYTP I Y++F Sbjct 2835 MACPIVVAVVDQDLGSTVFNVPTKVLRY-GYHVLHFITHALSADGVQCYTPHSQISYSNF 2893 Query 2909 ATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDG-SIIQFPNT 2967 S CVL++ CT+F A G P PYCY +++ + Y SL P RY L + I+FP Sbjct 2894 YASGCVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEV 2953 Query 2968 YLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLL 3027 EG VR+V T YCR G CE ++ G+C + +G WVLNNDYYRSLPG FCG D +L+ Sbjct 2954 LREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLI 3013 Query 3028 TNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLM 3087 +F L QP+ L ++AS +AG I+A++V + YY ++ +RAFG+Y+ +V N +++ + Sbjct 3014 YQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCV 3073 Query 3088 SFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIIC 3147 +F +L + VY L VY++ Y Y T Y +++S + H+QW+VM+ ++P W + YI Sbjct 3074 NFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISV 3133 Query 3148 ISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRY 3207 + + H +W F+ RR+ + S TFEE AL TF++ K+ Y KL++ L +NRY Sbjct 3134 VVSNHAFWVFA--YCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNRY 3189 Query 3208 LALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNS-GSDVLYQPPQTSITSAVLQSGF 3266 L+LYNKY+Y+SG MDT +YREAAC LAKA++ F+N+ GSDVLYQPP S++++ LQSG Sbjct 3190 LSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGI 3249 Query 3267 RKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSN 3326 KM P+ KVE C+V VT G TLNGLWLDD VYCPRHVIC++ DM NP+Y +LL R ++ Sbjct 3250 VKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTS 3309 Query 3327 HNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPS 3386 +F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P Sbjct 3310 SDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQ 3369 Query 3387 GVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYG 3446 G + MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G+FYG Sbjct 3370 GAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYG 3429 Query 3447 PFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLT 3506 P+ D Q Q D +VN +AWLYAA++N WF+ ++ DFN+ A+ + + Sbjct 3430 PYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVK 3489 Query 3507 QDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGV 3566 D V + L++ TG+++ + A++K L+NG GR I+GS EDE TP DV +Q +G+ Sbjct 3490 SDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGI 3546 Query 3567 TFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAM 3626 QS R +KG W++ + ++ +W++F ++ N L + + + AM Sbjct 3547 KLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTN-MLSITFCALCVISLAM 3605 Query 3627 MFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMY 3685 + VKHKH +L ++++P L T+ Y N +V ++ + WL S+ + D V+Y Sbjct 3606 LLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIY 3664 Query 3686 ASAVVL-LILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNY 3744 +++ ++ +T R++ D + + V+++V Y G+ L++ I + ++ S+ Y Sbjct 3665 GMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTY 3722 Query 3745 SGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYF 3804 + M A+ ++ V ++F ++ +++ Y F+GY +CY+GLF L+N F Sbjct 3723 TWTTALSMAAAK-VIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLF 3781 Query 3805 RLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSD 3864 R+ LGVY+Y +S QE RYMN+ GL PPKNS +A LN KLLG+GG P I+V+ QSK++D Sbjct 3782 RMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTD 3841 Query 3865 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3924 VKC +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + A Sbjct 3842 VKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAA 3901 Query 3925 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVL 3977 VD I ++C++ + LQA+ SEF ++ S+ + A++ ++A ++G + + L Sbjct 3902 VDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQL 3961 Query 3978 KKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4037 K+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 3962 KQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4021 Query 4038 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWE 4097 RKLDN ALN+I++NA GCVPLN IP A L +++PD + Y D TYA +W+ Sbjct 4022 RKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQ 4081 Query 4098 IQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCA 4155 IQ + D+D QL+EIS D + WPL++ A R N SA LQNNEL P L+ Sbjct 4082 IQTIQDSDGTNKQLNEISDDCN----WPLVIIANRHNEVSATVLQNNELMPAKLKTQVVN 4137 Query 4156 AGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRF 4215 +G QT T YYN + G+ V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4138 SGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKF 4194 Query 4216 VTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVD 4275 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VD Sbjct 4195 TVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVD 4254 Query 4276 AAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHID 4335 K Y D++ GG PI NCVKMLC H GTG AITV P+A +Q+S+GGAS C+YCR ++ Sbjct 4255 PKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVE 4314 Query 4336 HPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSAD 4395 HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D Sbjct 4315 HPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD 4372 Query 4396 AQSFLN 4401 +FLN Sbjct 4373 T-NFLN 4377 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + T V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 207/932 (22%), Positives = 354/932 (38%), Gaps = 162/932 (17%) Query 69 VFIKRS---DARTAPHGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL-- 122 +F +RS R A + HV +L + + G+ +G +G+ +G ++P + +PV RK + Sbjct 130 LFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVP 187 Query 123 ----LRKNGNKGA-------GGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTR 171 LRK G KGA GG + + K D D + +P F + Sbjct 188 WVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKK---------AY 238 Query 172 ELMRELNGGAYTRYVDNNFCG-----PDGYPLECIKDLLARAGKASCTL-SEQLDFIDTK 225 L+R G YVD C DG LE D + KA + S++L F Sbjct 239 ALIRGYRGVKPLLYVDQYGCDYTGGLADG--LEAYADKTLQEMKALFPIWSQELPF---- 292 Query 226 RGVYCCREHEHEIAWYTERSEK-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVF 275 + +AW+ R + LQ+ I+ D +G P V+ Sbjct 293 ---------DVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVY 343 Query 276 PLNSIIKTIQPRVE-----KKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGE 328 +SII V+ + D + V +C + + C D C Sbjct 344 ADDSIILRQHNLVDIMSCFYMEADAVVNAFYGV----DLKDCGFVMQFGYIDCEQDLCDF 399 Query 329 TSWQTGDFVKA-TCEFCGTENLTKEG-ATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAE 386 W G+ + C CG T + A + G LP N V+ A + G + S Sbjct 400 KGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTL 458 Query 387 YHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEG 442 Y G + FGGCV+ + N W+P +++ G +TGVVG Sbjct 459 Y------------GQTVVYFGGCVY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCK 502 Query 443 SEGLNDNLL-EILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQ 501 + NL+ + L + V + G+ E + + S L+ +K Sbjct 503 AIVKETNLICKALYLDYVQ-HKCGNLHQRELLGV---------SDVWHKQLLLNRGVYKP 552 Query 502 IVESCGNFKVTKGKAKKGAWNI---GEQKSILSPLY-----------AFASEAARVVRSI 547 ++E+ F + + K + + G +L L AF A ++ ++ Sbjct 553 LLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAV 612 Query 548 FSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQ 607 S++ E S+ L AAI L+ +++D SD T+ +V Sbjct 613 VSKSKELLDVSLDSLS-AAIHYLNS------KIVDLAQHFSDFGTS-------FVSKIVH 658 Query 608 LTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTC 667 + T+ L VL + + F+++ I ++ S V + Sbjct 659 FFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKN---IPRYASA-----VAQAFRSV 710 Query 668 AKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREET 727 AK + +S++ F + I + G+K+ + G + HS L + Sbjct 711 AKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERG---LLHSSQL------PLDVY 761 Query 728 GLLMP---LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVC 784 L MP KA ++ I+L+G + V + T L P E P V +C Sbjct 762 DLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYS-----EPPKVADKIC 816 Query 785 INGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNIT 842 I + + + Y + + + A +VTF + TV E+ K++ + Sbjct 817 IVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVF 876 Query 843 FELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPLGIDLDE 899 +ELD+ + +LN C + V+ ++ EF VV DA+ + L P EL + L + Sbjct 877 YELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQK 936 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDE 931 + +LFDE+GE LAS +YC+F P++D+ Sbjct 937 LEDNSLFLFDEAGEEVLASKLYCAFTAPEDDD 968 >sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 1871 bits (4846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1073/2886 (37%), Positives = 1630/2886 (56%), Gaps = 125/2886 (4%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + + TVD +N + V + +G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1868 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1924 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1925 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK + I D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTI--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1984 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 2041 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 2042 EDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVD 2101 D K E+ I L K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAK-------ESKEINIIKLSGVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLT 2080 Query 2102 NSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIV 2157 ++ N+LS + + T+ G+ V S+P D + KP N VV N + Sbjct 2081 GCRYVVRTANDLSMAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKI 2138 Query 2158 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 2217 + C N ++ + F LL + K T +A + + +F Sbjct 2139 SACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFLT 2189 Query 2218 LKSPNFSKLINII--IWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTN 2275 K ++ II I+ L + ++I+S L +G G ++ ST Sbjct 2190 FKWSVVARGACIIATIFLLWFNFIYANVIFSDFYL----PKIGFLPTFVGKIAQWIKSTF 2245 Query 2276 --VTIA------------TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAF 2321 VTI YC GSI C CL+G D LD Y +++ +Q ++ D AF Sbjct 2246 SLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRAF 2300 Query 2322 -------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLV 2372 +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLA 2360 Query 2373 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 2432 M P +R YI ASF ++ + HV GC+ C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 2433 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 2492 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 2493 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2552 V + L++++ GQ+TY+ + S FV+ NL + KG ++V+V + + +++ Sbjct 2481 DVKQVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKA 2538 Query 2553 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 2612 + +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L L Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 2613 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 2671 +ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 2672 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 2731 N + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2659 NLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKK 2718 Query 2732 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLIT 2791 A K L KLT V+V+TT +LKGG + + ++ ++LV F+ + + Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLV-CFIG--LWCLM 2775 Query 2792 PVHVMSKHTDFSSEI-IGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTND 2848 P + + K +DF + YK +D GV RD++ D CFANK FD W+ G Y+N Sbjct 2776 PTYTVHK-SDFQLPVYTSYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNS 2834 Query 2849 KACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDF 2908 ACP++ AV+ +++G V +P +LR LHF+ SA G CYTP I Y++F Sbjct 2835 MACPIVVAVVDQDLGSTVFNVPTKVLRY-GYHVLHFITHALSADGVQCYTPHSQISYSNF 2893 Query 2909 ATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDG-SIIQFPNT 2967 S CVL++ CT+F A G P PYCY +++ + Y SL P RY L + I+FP Sbjct 2894 YASGCVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEV 2953 Query 2968 YLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLL 3027 EG VR+V T YCR G CE ++ G+C + +G WVLNNDYYRSLPG FCG D +L+ Sbjct 2954 LREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLI 3013 Query 3028 TNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLM 3087 +F L QP+ L ++AS +AG I+A++V + YY ++ +RAFG+Y+ +V N +++ + Sbjct 3014 YQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCV 3073 Query 3088 SFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIIC 3147 +F +L + VY L VY++ Y Y T Y +++S + H+QW+VM+ ++P W + YI Sbjct 3074 NFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISV 3133 Query 3148 ISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRY 3207 + + H +W F+ RR+ + S TFEE AL TF++ K+ Y KL++ L +NRY Sbjct 3134 VVSNHAFWVFA--YCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNRY 3189 Query 3208 LALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNS-GSDVLYQPPQTSITSAVLQSGF 3266 L+LYNKY+Y+SG MDT +YREAAC LAKA++ F+N+ GSDVLYQPP S++++ LQSG Sbjct 3190 LSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGI 3249 Query 3267 RKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSN 3326 KM P+ KVE C+V VT G TLNGLWLDD VYCPRHVIC++ DM NP+Y +LL R ++ Sbjct 3250 VKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTS 3309 Query 3327 HNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPS 3386 +F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P Sbjct 3310 SDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQ 3369 Query 3387 GVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYG 3446 G + MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G+FYG Sbjct 3370 GAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYG 3429 Query 3447 PFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLT 3506 P+ D Q Q D +VN +AWLYAA++N WF+ ++ DFN+ A+ + + Sbjct 3430 PYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVK 3489 Query 3507 QDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGV 3566 D V + L++ TG+++ + A++K L+NG GR I+GS EDE TP DV +Q +G+ Sbjct 3490 SDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGI 3546 Query 3567 TFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAM 3626 QS R +KG W++ + ++ +W++F ++ N L + + + AM Sbjct 3547 KLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTN-MLSITFCALCVISLAM 3605 Query 3627 MFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMY 3685 + VKHKH +L ++++P L T+ Y N +V ++ + WL S+ + D V+Y Sbjct 3606 LLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIY 3664 Query 3686 ASAVVL-LILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNY 3744 +++ ++ +T R++ D + + V+++V Y G+ L++ I + ++ S+ Y Sbjct 3665 GMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTY 3722 Query 3745 SGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYF 3804 + M A+ ++ V ++F ++ +++ Y F+GY +CY+GLF L+N F Sbjct 3723 TWTTALSMAAAK-VIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLF 3781 Query 3805 RLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSD 3864 R+ LGVY+Y +S QE RYMN+ GL PPKNS +A LN KLLG+GG P I+V+ QSK++D Sbjct 3782 RMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTD 3841 Query 3865 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3924 VKC +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + A Sbjct 3842 VKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAA 3901 Query 3925 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVL 3977 VD I ++C++ + LQA+ SEF ++ S+ + A++ ++A ++G + + L Sbjct 3902 VDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQL 3961 Query 3978 KKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4037 K+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 3962 KQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4021 Query 4038 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWE 4097 RKLDN ALN+I++NA GCVPLN IP A L +++PD + Y D TYA +W+ Sbjct 4022 RKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQ 4081 Query 4098 IQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCA 4155 IQ + D+D QL+EIS D + WPL++ A R N SA LQNNEL P L+ Sbjct 4082 IQTIQDSDGTNKQLNEISDDCN----WPLVIIANRHNEVSATVLQNNELMPAKLKTQVVN 4137 Query 4156 AGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRF 4215 +G QT T YYN + G+ V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4138 SGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKF 4194 Query 4216 VTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVD 4275 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VD Sbjct 4195 TVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVD 4254 Query 4276 AAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHID 4335 K Y D++ GG PI NCVKMLC H GTG AITV P+A +Q+S+GGAS C+YCR ++ Sbjct 4255 PKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVE 4314 Query 4336 HPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSAD 4395 HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D Sbjct 4315 HPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD 4372 Query 4396 AQSFLN 4401 +FLN Sbjct 4373 T-NFLN 4377 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + T V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFD 1425 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 207/932 (22%), Positives = 354/932 (38%), Gaps = 162/932 (17%) Query 69 VFIKRS---DARTAPHGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL-- 122 +F +RS R A + HV +L + + G+ +G +G+ +G ++P + +PV RK + Sbjct 130 LFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVP 187 Query 123 ----LRKNGNKGA-------GGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTR 171 LRK G KGA GG + + K D D + +P F + Sbjct 188 WVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKK---------AY 238 Query 172 ELMRELNGGAYTRYVDNNFCG-----PDGYPLECIKDLLARAGKASCTL-SEQLDFIDTK 225 L+R G YVD C DG LE D + KA + S++L F Sbjct 239 ALIRGYRGVKPLLYVDQYGCDYTGGLADG--LEAYADKTLQEMKALFPIWSQELPF---- 292 Query 226 RGVYCCREHEHEIAWYTERSEK-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVF 275 + +AW+ R + LQ+ I+ D +G P V+ Sbjct 293 ---------DVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVY 343 Query 276 PLNSIIKTIQPRVE-----KKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGE 328 +SII V+ + D + V +C + + C D C Sbjct 344 ADDSIILRQHNLVDIMSCFYMEADAVVNAFYGV----DLKDCGFVMQFGYIDCEQDLCDF 399 Query 329 TSWQTGDFVKA-TCEFCGTENLTKEG-ATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAE 386 W G+ + C CG T + A + G LP N V+ A + G + S Sbjct 400 KGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTL 458 Query 387 YHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEG 442 Y G + FGGCV+ + N W+P +++ G +TGVVG Sbjct 459 Y------------GQTVVYFGGCVY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCK 502 Query 443 SEGLNDNLL-EILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQ 501 + NL+ + L + V + G+ E + + S L+ +K Sbjct 503 AIVKETNLICKALYLDYVQ-HKCGNLHQRELLGV---------SDVWHKQLLLNRGVYKP 552 Query 502 IVESCGNFKVTKGKAKKGAWNI---GEQKSILSPLY-----------AFASEAARVVRSI 547 ++E+ F + + K + + G +L L AF A ++ ++ Sbjct 553 LLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAV 612 Query 548 FSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQ 607 S++ E S+ L AAI L+ +++D SD T+ +V Sbjct 613 VSKSKELLDVSLDSLS-AAIHYLNS------KIVDLAQHFSDFGTS-------FVSKIVH 658 Query 608 LTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTC 667 + T+ L VL + + F+++ I ++ S V + Sbjct 659 FFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKN---IPRYASA-----VAQAFRSV 710 Query 668 AKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREET 727 AK + +S++ F + I + G+K+ + G + HS L + Sbjct 711 AKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERG---LLHSSQL------PLDVY 761 Query 728 GLLMP---LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVC 784 L MP KA ++ I+L+G + V + T L P E P V +C Sbjct 762 DLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYS-----EPPKVADKIC 816 Query 785 INGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNIT 842 I + + + Y + + + A +VTF + TV E+ K++ + Sbjct 817 IVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVF 876 Query 843 FELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPLGIDLDE 899 +ELD+ + +LN C + V+ ++ EF VV DA+ + L P EL + L + Sbjct 877 YELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDAIEEKLSPCKELEGVGAKVSAFLQK 936 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDE 931 + +LFDE+GE LAS +YC+F P++D+ Sbjct 937 LEDNSLFLFDEAGEEVLASKLYCAFTAPEDDD 968 >sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus (strain Quebec) OX=11133 GN=1a PE=3 SV=1 Length=4383 Score = 1868 bits (4840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1070/2891 (37%), Positives = 1629/2891 (56%), Gaps = 127/2891 (4%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1868 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1924 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1925 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK + + D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTV--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1984 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 2041 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 2042 EDLK-PVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 D K P +++ ++K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL 2079 Query 2101 DNSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 2156 ++ N LSR + + T+ G+ V S+P D + KP N VV N Sbjct 2080 TGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNK 2137 Query 2157 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 2216 ++ C N ++ + F LL + K T +A + + +F Sbjct 2138 ISACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFL 2188 Query 2217 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 2260 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSLV 2248 Query 2261 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 2320 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 2321 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 2371 F +V E ++Y L+T +FY L +Q+ ++ + ++ W + L+++L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHWSVRLLVSL 2359 Query 2372 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 2431 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 2432 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2491 R + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 2492 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 2551 V + L++D+ GQ+TY+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 2552 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 2611 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 2612 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 2670 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 2671 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 2730 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2658 NNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLK 2717 Query 2731 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLI 2790 A K L +LT V+V+TT +LKGG + + ++ ++LV F+ + + Sbjct 2718 KACCKTGLKLELTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLV-CFIG--LWCL 2774 Query 2791 TPVHVMSKHTDFSSEIIG-YKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTN 2847 P + + K +DF + YK +D GV RD++ D CFANK FD W+ G Y+N Sbjct 2775 MPTYTVHK-SDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSN 2833 Query 2848 DKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTD 2907 ACP++ AV+ ++ G V +P +LR LHF+ SA G CYTP I Y++ Sbjct 2834 SMACPIVVAVVDQDFGSTVFNVPTKVLRY-GYHVLHFITHALSADGVQCYTPHSQISYSN 2892 Query 2908 FATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDG-SIIQFPN 2966 F S CVL++ CT+F A G P PYCY +++ + Y SL P RY L + I+ P Sbjct 2893 FYASGCVLSSACTMFAMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRLPE 2952 Query 2967 TYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNL 3026 EG VR+V T YCR G CE ++ G+C + +G WVLNNDYYRSLPG FCG D +L Sbjct 2953 VLREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDL 3012 Query 3027 LTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFL 3086 + +F L QP+ L ++AS +AG I+A++V YY ++ +RAFG+Y+ +V N +++ Sbjct 3013 IYQLFKGLAQPVDFLALTASSIAGAILAVIVVLGFYYLIKLKRAFGDYTSIVFVNVIVWC 3072 Query 3087 MSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYII 3146 ++F +L + VY L VY++ Y Y T Y +++S + H+QW+VM+ ++P W + YI Sbjct 3073 VNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIS 3132 Query 3147 CISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNR 3206 + + H +W FS R++ + S TFEE AL TF++ K+ Y KL++ L +NR Sbjct 3133 VVVSNHAFWVFS--YCRQLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNR 3188 Query 3207 YLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNS-GSDVLYQPPQTSITSAVLQSG 3265 YL+LYNKY+Y+SG MDT +YREAAC LAKA++ F+N+ GSDVLYQPP S++++ LQSG Sbjct 3189 YLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSG 3248 Query 3266 FRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKS 3325 KM P+ KVE C+V VT G TLNGLWLDD VYCPRHVIC++ DM NP+Y +LL R + Sbjct 3249 IVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVT 3308 Query 3326 NHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSP 3385 + +F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P Sbjct 3309 SSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKP 3368 Query 3386 SGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFY 3445 G + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G+FY Sbjct 3369 QGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFY 3428 Query 3446 GPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL 3505 GP+ D Q Q D +VN +AWLYAA++N WF+ ++ DFN+ A+ + + Sbjct 3429 GPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQV 3488 Query 3506 TQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSG 3565 D V + L++ TG+++ + A++K L+NG GR I+GS EDE TP DV +Q +G Sbjct 3489 KSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAG 3545 Query 3566 VTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFA 3625 + QS R +KG W++ + ++ +W++F ++ N L + + + A Sbjct 3546 IKLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTN-MLSITFCALCVISLA 3604 Query 3626 MMFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVM 3684 M+ VKHKH +L ++++P L T+ Y N +V ++ + WL S+ + D V+ Sbjct 3605 MLLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVI 3663 Query 3685 YASAVVL-LILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSN 3743 Y +++ ++ +T R++ D + + V+++V Y G+ L++ I + ++ S+ Sbjct 3664 YGMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGT 3721 Query 3744 YSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 Y+ M A+ ++ V ++F ++ +++ Y F+GY +CY+GLF L+N Sbjct 3722 YTWTTALSMAAAK-VIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSL 3780 Query 3804 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMS 3863 FR+ LGVY+Y +S QE RYMN+ GL PPKNS +A LN KLLG+GG P I+V+ QSK++ Sbjct 3781 FRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLT 3840 Query 3864 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3923 DVKC + LL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + Sbjct 3841 DVKCANGGLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPA 3900 Query 3924 AVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVV 3976 AVD I ++C++ + LQA+ SEF ++ S+ + A++ ++A ++G + + Sbjct 3901 AVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEACSSGSANQQQ 3960 Query 3977 LKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTM 4036 LK+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M Sbjct 3961 LKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSM 4020 Query 4037 LRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALW 4096 +RKLDN ALN+I++NA GCVPLN IP A L +++PD + Y D TYA +W Sbjct 4021 VRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVW 4080 Query 4097 EIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSC 4154 +IQ + D+D QL EIS D + WPL++ A R N SA LQNNEL P L+ Sbjct 4081 QIQTIQDSDGTNKQLHEISDDCN----WPLVIIANRHNEVSATVLQNNELMPAKLKTQVV 4136 Query 4155 AAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCR 4214 +G QT T YYN + G+ V A+LSD+ LK+ + K DG + EL+PPC+ Sbjct 4137 NSGPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCK 4193 Query 4215 FVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAV 4274 F KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+V Sbjct 4194 FTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSV 4253 Query 4275 DAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHI 4334 D K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR + Sbjct 4254 DPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARV 4313 Query 4335 DHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSA 4394 +HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS Sbjct 4314 EHPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSK 4371 Query 4395 DAQSFLNGFAV 4405 D +FLNGF V Sbjct 4372 DT-NFLNGFGV 4381 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 115/262 (44%), Gaps = 30/262 (11%) Query 697 GAKLKALNLGETFV----THSKGLYRKCVKSRE----ETGLLMPLKAPKEIIFLEGETLP 748 GAK+ +L TF+ G R C+ + E GLL + P ++ L T+P Sbjct 710 GAKVGLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERGLLHSSQLPLDVYDL---TMP 766 Query 749 TEVLTEE---VVLK-TGDLQPLEQPTSEAV----------EAPLVGTPVCINGLMLLEIK 794 ++V + + LK +G L E V E P V +CI + + Sbjct 767 SQVQKTKQKGIYLKGSGSDFSLADSVVEVVTTSLTPCGYSEPPKVADKICIVDNVYMAKA 826 Query 795 DTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKV 852 + Y + + + A VTF + TV E+ K++ + +ELD+ + + Sbjct 827 GDKYYPVVVDGHVGLLDQAWRVPCAGRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTI 886 Query 853 LNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPLGIDLDEWSMATYYLFD 909 LN C + V+ ++ EF VV DA+ + L P EL + L + + +LFD Sbjct 887 LNTACGEFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFD 946 Query 910 ESGEFKLASHMYCSFYPPDEDE 931 E+GE LA +YC+F P++D+ Sbjct 947 EAGEEVLAPKLYCAFTAPEDDD 968 >sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus (strain Mebus) OX=11132 GN=1a PE=3 SV=1 Length=4383 Score = 1868 bits (4839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1070/2891 (37%), Positives = 1631/2891 (56%), Gaps = 127/2891 (4%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1868 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1924 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1925 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK + + D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTV--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1984 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 2041 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 2042 EDLK-PVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 D K P +++ ++K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL 2079 Query 2101 DNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 2156 ++ N LSR + + T+ G+ V S+P D + KP N VV N Sbjct 2080 TGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNK 2137 Query 2157 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 2216 ++ C N ++ + F LL + K T +A + + +F Sbjct 2138 ISACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFL 2188 Query 2217 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAALGVLMSNLG-MPSYCTGYREGYLNS 2273 K ++ II I+ L + ++I+S L +G +P++ + N+ Sbjct 2189 TFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYL----PKIGFLPTFVGKIAQWIKNT 2244 Query 2274 TN-VTIA------------TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 2320 + VTI YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2245 FSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 2321 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 2371 F +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSL 2359 Query 2372 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 2431 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 2432 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2491 R + ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDAMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 2492 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 2551 V + L++D+ GQ+TY+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 2552 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 2611 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 2612 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 2670 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 2671 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 2730 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2658 NNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLK 2717 Query 2731 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLI 2790 A K L KLT V+V+TT +LKGG + + ++ ++LV F+ + + Sbjct 2718 KACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLV-CFIG--LWCL 2774 Query 2791 TPVHVMSKHTDFSSEIIG-YKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTN 2847 P + + K +DF + YK +D GV RD++ D CFANK FD W+ G Y+N Sbjct 2775 MPTYTVHK-SDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSN 2833 Query 2848 DKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTD 2907 ACP++ AV+ ++ G V +P +LR LHF+ SA G CYTP I Y++ Sbjct 2834 SMACPIVVAVVDQDFGSTVFNVPTKVLRY-GYHVLHFITHALSADGVQCYTPHSQISYSN 2892 Query 2908 FATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDG-SIIQFPN 2966 F S CVL++ CT+F A G P PYCY +++ + Y SL P RY L + I+FP Sbjct 2893 FYASGCVLSSACTMFAMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPE 2952 Query 2967 TYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNL 3026 EG VR+V T YCR G CE ++ G+C + +G WVLNNDYYRSLPG FCG D +L Sbjct 2953 VLREGLVRIVRTRSMPYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDL 3012 Query 3027 LTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFL 3086 + +F L QP+ L ++AS +AG I+A++V + YY ++ +RAFG+Y+ +V N +++ Sbjct 3013 IYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWC 3072 Query 3087 MSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYII 3146 ++F +L + VY L VY++ Y Y T Y +++S + H+QW+VM+ ++P W + YI Sbjct 3073 VNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIS 3132 Query 3147 CISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNR 3206 + + H +W FS R++ + S TFEE AL TF++ K+ Y KL++ L +NR Sbjct 3133 VVVSNHAFWVFS--YCRQLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNR 3188 Query 3207 YLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNS-GSDVLYQPPQTSITSAVLQSG 3265 YL+LYNKY+Y+SG MDT +YREAAC LAKA++ F+N+ GSDVLYQPP S++++ LQSG Sbjct 3189 YLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSG 3248 Query 3266 FRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKS 3325 KM P+ KVE C+V VT G TLNGLWL D VYCPRHVIC++ DM NP+Y +LL R + Sbjct 3249 IVKMVNPTSKVEPCIVSVTYGNMTLNGLWLGDKVYCPRHVICSASDMTNPDYTNLLCRVT 3308 Query 3326 NHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSP 3385 + +F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P Sbjct 3309 SSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKP 3368 Query 3386 SGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFY 3445 G + MR ++TIKGSFL GSCGSV + I DCV F YMH +EL TG H GTD G+FY Sbjct 3369 QGAFHVTMRSSYTIKGSFLCGSCGSVVYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFY 3428 Query 3446 GPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL 3505 GP+ D Q Q D +VN +AWLYAA++N WF+ ++ DFN+ A+ + + Sbjct 3429 GPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQV 3488 Query 3506 TQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSG 3565 D V + L++ TG+++ + A++K L+NG GR I+GS EDE TP DV +Q +G Sbjct 3489 KSDLV--IDALASMTGVSLETLLAAIKH-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAG 3545 Query 3566 VTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFA 3625 + QS R +KG W++ + ++ +W++F ++ N L + + + Sbjct 3546 IKLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTN-MLSITFCALCVISLT 3604 Query 3626 MMFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVM 3684 M+ VKHKH +L ++++P L T+ Y N +V ++ + WL S+ + D V+ Sbjct 3605 MLLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVI 3663 Query 3685 YASAVVL-LILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSN 3743 Y +++ ++ +T R++ + + V+++V Y G+ L++ I + ++ S+ Sbjct 3664 YGMLLLIGMVFVTLRSINQYLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGT 3721 Query 3744 YSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 Y+ M A+ ++ V ++F ++ +++ Y F+GY +CY+GLF L+N Sbjct 3722 YTWTTALSMAAAK-VIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSL 3780 Query 3804 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMS 3863 FR+ LGVY+Y +S QE RYMN+ GL PPKNS +A LN KLLG+GG P I+V+ QSK++ Sbjct 3781 FRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLT 3840 Query 3864 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3923 DVKC +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + Sbjct 3841 DVKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPA 3900 Query 3924 AVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVV 3976 AVD I ++C++ + LQA+ SEF ++ S+ + A++ ++A ++G + + Sbjct 3901 AVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEACSSGSANQQQ 3960 Query 3977 LKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTM 4036 LK+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M Sbjct 3961 LKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSM 4020 Query 4037 LRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALW 4096 +RKLDN ALN+I++NA GCVPLN IP A L +++PD + Y D TYA +W Sbjct 4021 VRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVW 4080 Query 4097 EIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSC 4154 +IQ + D+D QL EIS D + WPL++ A R N SA LQNNEL P L+ Sbjct 4081 QIQTIQDSDGTNKQLHEISDDCN----WPLVIIANRHNEVSATALQNNELMPAKLKTQVV 4136 Query 4155 AAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCR 4214 +G QT T YYN + G+ V A+LSD+ LK+ + K DG + EL+PPC+ Sbjct 4137 NSGPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCK 4193 Query 4215 FVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAV 4274 F KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+V Sbjct 4194 FTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSV 4253 Query 4275 DAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHI 4334 D K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR + Sbjct 4254 DPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARV 4313 Query 4335 DHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSA 4394 +HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS Sbjct 4314 EHPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSK 4371 Query 4395 DAQSFLNGFAV 4405 D +FLNGF V Sbjct 4372 DT-NFLNGFGV 4381 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 204/930 (22%), Positives = 350/930 (38%), Gaps = 158/930 (17%) Query 69 VFIKRS---DARTAPHGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL-- 122 +F +RS R A + HV +L + + G+ +G +G+ +G ++P + +PV RK + Sbjct 130 LFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVP 187 Query 123 ----LRKNGNKGA-------GGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTR 171 LRK G KGA GG + + K D D + +P F + Sbjct 188 WVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKK---------AY 238 Query 172 ELMRELNGGAYTRYVDNNFC---GPDGYPLECIKDLLARAGKASCTL-SEQLDFIDTKRG 227 L+R G YVD C G LE D + KA + S++L F Sbjct 239 ALIRGYRGVKPLLYVDQYGCDYTGGLADGLEAYADKTLQEMKALFPIWSQELPF------ 292 Query 228 VYCCREHEHEIAWYTERSEK-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPL 277 + +AW+ R + LQ+ I+ D +G P V+ Sbjct 293 -------DVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYAD 345 Query 278 NSIIKTIQPRVE-----KKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETS 330 +SII V+ + D + V +C + + C D C Sbjct 346 DSIILRQHNLVDIMSCFYMEADAVVNAFYGV----DLKDCGFVMQFGYIDCEQDLCDFKG 401 Query 331 WQTGDFVKA-TCEFCGTENLTKEG-ATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYH 388 W G+ + C CG T + A + G LP N V+ A + G + S Y Sbjct 402 WVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY- 459 Query 389 NESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEGSE 444 G + FGGCV+ + N W+P +++ G +TGVVG + Sbjct 460 -----------GQTVVYFGGCVY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCKAI 504 Query 445 GLNDNLL-EILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIV 503 NL+ + L + V + G+ E + + S L+ +K ++ Sbjct 505 VKETNLICKALYLDYVQ-HKCGNLHQRELLGV---------SDVWHKQLLLNRGVYKPLL 554 Query 504 ESCGNFKVTKGKAKKGAWNI---GEQKSILSPLY-----------AFASEAARVVRSIFS 549 E+ F + + K + + G +L L AF A ++ ++ S Sbjct 555 ENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYAGKICHAVVS 614 Query 550 RTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLT 609 ++ E S+ L AAI L+ +++D SD T+ +V Sbjct 615 KSKELLDVSLDSL-GAAIHYLNS------KIVDLAQHFSDFGTS-------FVSKIVHFF 660 Query 610 SQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAK 669 + T+ L VL + + F+++ I ++ S V + AK Sbjct 661 KTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKN---IPRYASA-----VAQAFRSVAK 712 Query 670 EIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGL 729 + +S++ F + I + G+K+ + G + HS L + L Sbjct 713 VVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERG---LLHSSQL------PLDVYDL 763 Query 730 LMP---LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCIN 786 MP K ++ I+L+G + V + T L P E P V +CI Sbjct 764 TMPSQVQKTKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYS-----EPPKVADKICIV 818 Query 787 GLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNITFE 844 + + + Y + + + A VTF + TV E+ K++ + +E Sbjct 819 DNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRCVTFKEQPTVNEIASTPKTIKVFYE 878 Query 845 LDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPLGIDLDEWS 901 LD+ + +LN C + V+ ++ EF VV DA+ + L P EL + L + Sbjct 879 LDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLE 938 Query 902 MATYYLFDESGEFKLASHMYCSFYPPDEDE 931 + +LFDE+GE LA +YC+F P++D+ Sbjct 939 DNSLFLFDEAGEEVLAPKLYCAFTAPEDDD 968 >sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 1861 bits (4821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1076/2890 (37%), Positives = 1626/2890 (56%), Gaps = 133/2890 (5%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLH 1684 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 L F Q+A+ R+G A F AL+LA G+ D R+ + +F +L Sbjct 1685 LTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 + CK CG +Q G++AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S PA +L G + A+ + G+ GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFIGD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCL 1860 Query 1868 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1924 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1925 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK + + D LN G+ E K+T +P GDVV + Y +++G Sbjct 1920 YTNFKLIGHTV--CDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGC 1977 Query 1984 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 2041 KP++W H + N TY ++ + N FDVLK +D + + Sbjct 1978 ITFGKPVIWLSHEKASLNSLTY----------FNRPLLVDDNKFDVLKVDDVDDSGDSSE 2027 Query 2042 EDLKPVSE-EVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 K E +++ ++K +V +I+ + K + + D+ ++ Sbjct 2028 SGAKETKEINIIKLSGVKKPF--------KVEDSVIVNDDTSETKYVKSLSIVDVYDMWL 2079 Query 2101 DNSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 2156 ++ N LSR + + T+ G+ V S+P D + KP +N VV N Sbjct 2080 TGCKYVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPAVN-VVKAVRNK 2137 Query 2157 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 2216 + C N ++ + F LL + K T IA + + +F Sbjct 2138 TSACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEIASKLTCKLVALAFKNAFL 2188 Query 2217 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 2260 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSMVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLV 2248 Query 2261 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 2320 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 2321 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 2371 F +V E ++Y L+T +FY L +Q+ ++ F+ ++ W L++ L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVAL 2359 Query 2372 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 2431 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 2432 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2491 R + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 2492 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 2551 V S+ L++D+ GQ+ Y+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 2552 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 2611 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 2612 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 2670 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 2671 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 2730 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F S + +++ Sbjct 2658 NNLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLK 2717 Query 2731 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLI 2790 A K L KLT V+V+TT +LKGG + + ++ ++LV F+ + + Sbjct 2718 KACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLV-CFIG--LWCL 2774 Query 2791 TPVHVMSKHTDFSSEIIG-YKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTN 2847 P + + K +DF + YK +D GV RD++ D CFANK FD W+ G Y+N Sbjct 2775 MPTYTVHK-SDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSN 2833 Query 2848 DKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTD 2907 ACP++ AVI ++ G V +P +LR LHF+ SA G CYTP I Y++ Sbjct 2834 SMACPIVVAVIDQDFGSTVFNVPTKVLRY-GYHVLHFITHALSADGVQCYTPHSQISYSN 2892 Query 2908 FATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDG-SIIQFPN 2966 F S CVL++ CT+F A G P PYCY +++ + Y SL P RY L + I+FP Sbjct 2893 FYASGCVLSSACTMFTMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPE 2952 Query 2967 TYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNL 3026 EG VRVV T YCR G CE ++ G+C + +G WVLNNDYYRSLPG FCG D +L Sbjct 2953 VLREGLVRVVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDL 3012 Query 3027 LTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFL 3086 + +F L QP+ L ++AS +AG I+A++V + YY ++ +RAFG+Y+ VV N +++ Sbjct 3013 IYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSVVFVNVIVWC 3072 Query 3087 MSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYII 3146 ++F +L + VY L VY++ Y Y T Y +++S + H+QW+VM+ ++P W + YI Sbjct 3073 VNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIA 3132 Query 3147 CISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNR 3206 + + H +W FS R++ + S TFEE AL TF++ K+ Y KL++ L +NR Sbjct 3133 VVVSNHAFWVFS--YCRKLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNR 3188 Query 3207 YLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNS-GSDVLYQPPQTSITSAVLQSG 3265 YL+LYNKY+Y+SG MDT +YREAAC LAKA++ F+N+ GSDVLYQPP S++++ LQSG Sbjct 3189 YLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSG 3248 Query 3266 FRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKS 3325 KM P+ KVE C+V VT G TLNGLWLDD VYCPRHVIC++ DM NP+Y +LL R + Sbjct 3249 IVKMVNPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVT 3308 Query 3326 NHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSP 3385 + +F V + L V+ + M+ C+L L V N +TPKY F ++PG+TF+VLA YNG P Sbjct 3309 SSDFTVLFDRLSLTVMSYQMRGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKP 3368 Query 3386 SGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFY 3445 G + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G+FY Sbjct 3369 QGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFY 3428 Query 3446 GPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL 3505 GP+ D Q Q D +VN LAWLYAA++N WF+ ++ DFN+ A+ + + Sbjct 3429 GPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNNCNWFIQSDKCSVEDFNVWALSNGFSQV 3488 Query 3506 TQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSG 3565 D V + L++ TG+++ + A++K L+NG GR I+GS EDE TP DV +Q +G Sbjct 3489 KSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAG 3545 Query 3566 VTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFA 3625 + QS R KGT W++ + ++ +W++F ++ N F + + + A Sbjct 3546 IKLQSKRTRLFKGTVCWIMASTFLFSCIITAFVKWTMFMYVTTNMF-SITFCALCVISLA 3604 Query 3626 MMFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVM 3684 M+ VKHKH +L +++ P L T+ Y N +V ++ + WL S+ + D V+ Sbjct 3605 MLLVKHKHLYLTMYITPVLFTLLYNNYLVVYKHTFRGYVYAWLSYYVPSVE-YTYTDEVI 3663 Query 3685 YASAVVL-LILMTARTVYDD---GARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISV 3740 Y +++ ++ +T R++ D V L++V +L YK G+ L++ I + ++ S+ Sbjct 3664 YGMLLLVGMVFVTLRSINHDLFSFIMFVGRLISVFSLWYK---GSNLEEEILL--MLASL 3718 Query 3741 TSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLL 3800 Y+ M +A+ ++ V ++F ++ ++L Y F+GY +CY+GLF L+ Sbjct 3719 FGTYTWTTVLSMAVAK-VIAKWVAVNVLYFTDIPQIKIVLLCYLFIGYIISCYWGLFSLM 3777 Query 3801 NRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQS 3860 N FR+ LGVY+Y +S QE RYMN+ GL PPKNS +A LN KLLG+GG P I+V+ QS Sbjct 3778 NSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQS 3837 Query 3861 KMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLS 3920 K++DVKC +VVLL+ LQ L V S+SKLW C LHN+IL D + AFEK+ LL VL + Sbjct 3838 KLTDVKCANVVLLNCLQHLHVASNSKLWHYCSTLHNEILATSDLSVAFEKLAQLLIVLFA 3897 Query 3921 MQGAVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS- 3973 AVD I ++C++ + LQA+ SEF ++ S+ + A++ ++A +G + Sbjct 3898 NPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARFSGSAN 3957 Query 3974 EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTML 4033 + LK+L+K+ N+AKS ++RD A+ +KLE+MAD A+T MYK+AR DK++KV SA+QTML Sbjct 3958 QQQLKQLEKACNIAKSAYERDRAVAKKLERMADLALTNMYKEARINDKKSKVVSALQTML 4017 Query 4034 FTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYAS 4093 F+M+RKLDN ALN+I++NA GCVPLN IP A L +++PD + Y D TYA Sbjct 4018 FSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLNIIVPDKSVYDQIVDNIYVTYAG 4077 Query 4094 ALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQ 4151 +W+IQ + D+D QL+EIS D + WPL++ A R N SA LQNNEL P L+ Sbjct 4078 NVWQIQTIQDSDGTNKQLNEISDDCN----WPLVIIANRYNEVSATVLQNNELMPAKLKI 4133 Query 4152 MSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEP 4211 +G QT T YYN + G+ V A+LSD+ LK+ + K DG + EL+P Sbjct 4134 QVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDP 4190 Query 4212 PCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCA 4271 PC+F KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CA Sbjct 4191 PCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCA 4250 Query 4272 FAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCR 4331 F+VD K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR Sbjct 4251 FSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCR 4310 Query 4332 CHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPML 4391 ++HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + + Sbjct 4311 ARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCRVCGFWRDGSCSCVS-TDTTV 4368 Query 4392 QSADAQSFLN 4401 QS D +FLN Sbjct 4369 QSKDT-NFLN 4377 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (52%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV DI++ +K VK VVVN AN ++ HGGGVA A+ A E+ + + + Sbjct 1273 ITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKS 1332 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G G V +G L K L+VVGP+ + LL+ Y++FN ++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISA 1392 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 60/242 (25%), Positives = 102/242 (42%), Gaps = 30/242 (12%) Query 715 GLYRKCVKSRE----ETGLL----MPL------------KAPKEIIFLEGETLPTEVLTE 754 G R C+ R+ E GLL +PL KA ++ I+L+G + Sbjct 732 GRRRICLSGRKIYEVERGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADS 791 Query 755 EVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFT 814 V + T L P E P V +CI + + + Y + + + + Sbjct 792 VVEVVTTSLTPCGYS-----EPPKVADKICIVDNVYMAKAGDKYYPVVVDDHVGLLDQAW 846 Query 815 LKGGAPTKVTFGDDTVIE--VQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFA 872 A +VTF + ++ + K + + +ELD + +LN C + V+ ++ EF Sbjct 847 RVPCAGRRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFY 906 Query 873 CVVADAVIKTLQPVSELL---TPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDE 929 VV DA+ + L P EL + L + +LFDE+GE A +YC+F P++ Sbjct 907 AVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPED 966 Query 930 DE 931 D+ Sbjct 967 DD 968 >sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 1861 bits (4821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1067/2887 (37%), Positives = 1626/2887 (56%), Gaps = 127/2887 (4%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1868 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1924 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1925 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK + + D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTV--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1984 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 2041 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 2042 EDLK-PVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 D K P +++ ++K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL 2079 Query 2101 DNSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 2156 ++ N LSR + + T+ G+ V S+P D + KP N VV N Sbjct 2080 TGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNK 2137 Query 2157 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 2216 ++ C N ++ + F LL + K T +A + + +F Sbjct 2138 ISACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFL 2188 Query 2217 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 2260 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLV 2248 Query 2261 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 2320 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 2321 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 2371 F +V E ++Y L+T +FY L +Q+ ++ F+ ++ W + L+++L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSL 2359 Query 2372 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 2431 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 2432 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2491 R + ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDAMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 2492 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 2551 V + L++D+ GQ+TY+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 2552 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 2611 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 2612 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 2670 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 2671 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 2730 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2658 NNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLK 2717 Query 2731 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLI 2790 A K L KLT V+V+TT +LKGG + + ++ ++LV F+ + + Sbjct 2718 KACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLV-CFIG--LWCL 2774 Query 2791 TPVHVMSKHTDFSSEIIG-YKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTN 2847 P + + K +DF + YK +D GV RD++ D CFANK FD W+ G Y+N Sbjct 2775 MPTYTVHK-SDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSN 2833 Query 2848 DKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTD 2907 ACP++ AV+ ++ G V +P +LR LHF+ SA G CYTP I Y++ Sbjct 2834 SMACPIVVAVVDQDFGSTVFNVPTKVLRY-GYHVLHFITHALSADGVQCYTPHSQISYSN 2892 Query 2908 FATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDG-SIIQFPN 2966 F S CVL++ CT+F A G P PYCY +++ + Y SL P RY L + I+FP Sbjct 2893 FYASGCVLSSACTMFAMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPE 2952 Query 2967 TYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNL 3026 EG VR+V T YCR G CE ++ G+C + +G WVLNNDYYRSLPG FCG D +L Sbjct 2953 VLREGLVRIVRTRSMPYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDL 3012 Query 3027 LTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFL 3086 + +F L QP+ L ++AS +AG I+A++V + YY ++ +RAFG+Y+ +V N +++ Sbjct 3013 IYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWC 3072 Query 3087 MSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYII 3146 ++F +L + VY L VY++ Y Y T Y +++S + H+QW+VM+ ++P W + YI Sbjct 3073 VNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIS 3132 Query 3147 CISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNR 3206 + + H +W FS R++ + S TFEE AL TF++ K+ Y KL++ L +NR Sbjct 3133 VVVSNHAFWVFS--YCRQLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNR 3188 Query 3207 YLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNS-GSDVLYQPPQTSITSAVLQSG 3265 YL+LYNKY+Y+SG MDT +YREAAC LAKA++ F+N+ GSDVLYQPP S++++ LQSG Sbjct 3189 YLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSG 3248 Query 3266 FRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKS 3325 KM P+ KVE C+V VT G TLNGLWL D VYCPRHVIC++ DM NP+Y +LL R + Sbjct 3249 IVKMVNPTSKVEPCIVSVTYGNMTLNGLWLGDKVYCPRHVICSASDMTNPDYTNLLCRVT 3308 Query 3326 NHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSP 3385 + +F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P Sbjct 3309 SSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKP 3368 Query 3386 SGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFY 3445 G + MR ++TIKGSFL GSCGSV + I DCV F YMH +EL TG H GTD G+FY Sbjct 3369 QGAFHVTMRSSYTIKGSFLCGSCGSVVYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFY 3428 Query 3446 GPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL 3505 GP+ D Q Q D +VN +AWLYAA++N WF+ ++ DFN+ A+ + + Sbjct 3429 GPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQV 3488 Query 3506 TQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSG 3565 D V + L++ TG+++ + A++K L+NG GR I+GS EDE TP DV +Q +G Sbjct 3489 KSDLV--IDALASMTGVSLETLLAAIKH-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAG 3545 Query 3566 VTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFA 3625 + QS R +KG W++ + ++ +W++F ++ N L + + + Sbjct 3546 IKLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTN-MLSITFCALCVISLT 3604 Query 3626 MMFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVM 3684 M+ VKHKH +L ++++P L T+ Y N +V ++ + WL S+ + D V+ Sbjct 3605 MLLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVI 3663 Query 3685 YASAVVL-LILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSN 3743 Y +++ ++ +T R++ + + V+++V Y G+ L++ I + ++ S+ Sbjct 3664 YGMLLLIGMVFVTLRSINQYLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGT 3721 Query 3744 YSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 Y+ M A+ ++ V ++F ++ +++ Y F+GY +CY+GLF L+N Sbjct 3722 YTWTTALSMAAAK-VIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSL 3780 Query 3804 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMS 3863 FR+ LGVY+Y +S QE RYMN+ GL PPKNS +A LN KLLG+GG P I+V+ QSK++ Sbjct 3781 FRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLT 3840 Query 3864 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3923 DVKC +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + Sbjct 3841 DVKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPA 3900 Query 3924 AVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVV 3976 AVD I ++C++ + LQA+ SEF ++ S+ + A++ ++A ++G + + Sbjct 3901 AVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEACSSGSANQQQ 3960 Query 3977 LKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTM 4036 LK+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M Sbjct 3961 LKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSM 4020 Query 4037 LRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALW 4096 +RKLDN ALN+I++NA GCVPLN IP A L +++PD + Y D TYA +W Sbjct 4021 VRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVW 4080 Query 4097 EIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSC 4154 +IQ + D+D QL EIS D + WPL++ A R N SA LQNNEL P L+ Sbjct 4081 QIQTIQDSDGTNKQLHEISDDCN----WPLVIIANRHNEVSATALQNNELMPAKLKTQVV 4136 Query 4155 AAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCR 4214 +G QT T YYN + G+ V A+LSD+ LK+ + K DG + EL+PPC+ Sbjct 4137 NSGPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCK 4193 Query 4215 FVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAV 4274 F KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+V Sbjct 4194 FTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSV 4253 Query 4275 DAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHI 4334 D K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR + Sbjct 4254 DPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARV 4313 Query 4335 DHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSA 4394 +HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS Sbjct 4314 EHPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSK 4371 Query 4395 DAQSFLN 4401 D +FLN Sbjct 4372 DT-NFLN 4377 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 205/932 (22%), Positives = 351/932 (38%), Gaps = 162/932 (17%) Query 69 VFIKRS---DARTAPHGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL-- 122 +F +RS R A + HV +L + + G+ +G +G+ +G ++P + +PV RK + Sbjct 130 LFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVP 187 Query 123 ----LRKNGNKGA-------GGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTR 171 LRK G KGA GG + + K D D + +P F + Sbjct 188 WVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKK---------AY 238 Query 172 ELMRELNGGAYTRYVDNNFCG-----PDGYPLECIKDLLARAGKASCTL-SEQLDFIDTK 225 L+R G YVD C DG LE D + KA + S++L F Sbjct 239 ALIRGYRGVKPLLYVDQYGCDYTGGLADG--LEAYADKTLQEMKALFPIWSQELPF---- 292 Query 226 RGVYCCREHEHEIAWYTERSEK-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVF 275 + +AW+ R + LQ+ I+ D +G P V+ Sbjct 293 ---------DVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVY 343 Query 276 PLNSIIKTIQPRVE-----KKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGE 328 +SII V+ + D + V +C + + C D C Sbjct 344 ADDSIILRQHNLVDIMSCFYMEADAVVNAFYGV----DLKDCGFVMQFGYIDCEQDLCDF 399 Query 329 TSWQTGDFVKA-TCEFCGTENLTKEG-ATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAE 386 W G+ + C CG T + A + G LP N V+ A + G + S Sbjct 400 KGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTL 458 Query 387 YHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEG 442 Y G + FGGCV+ + N W+P +++ G +TGVVG Sbjct 459 Y------------GQTVVYFGGCVY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCK 502 Query 443 SEGLNDNLL-EILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQ 501 + NL+ + L + V + G+ E + + S L+ +K Sbjct 503 AIVKETNLICKALYLDYVQ-HKCGNLHQRELLGV---------SDVWHKQLLLNRGVYKP 552 Query 502 IVESCGNFKVTKGKAKKGAWNI---GEQKSILSPLY-----------AFASEAARVVRSI 547 ++E+ F + + K + + G +L L AF A ++ ++ Sbjct 553 LLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYAGKICHAV 612 Query 548 FSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQ 607 S++ E S+ L AAI L+ +++D SD T+ +V Sbjct 613 VSKSKELLDVSLDSL-GAAIHYLNS------KIVDLAQHFSDFGTS-------FVSKIVH 658 Query 608 LTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTC 667 + T+ L VL + + F+++ I ++ S V + Sbjct 659 FFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKN---IPRYASA-----VAQAFRSV 710 Query 668 AKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREET 727 AK + +S++ F + I + G+K+ + G + HS L + Sbjct 711 AKVVLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERG---LLHSSQL------PLDVY 761 Query 728 GLLMP---LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVC 784 L MP K ++ I+L+G + V + T L P E P V +C Sbjct 762 DLTMPSQVQKTKQKPIYLKGSGSDFSLADSVVEVVTTSLTPCGYS-----EPPKVADKIC 816 Query 785 INGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNIT 842 I + + + Y + + + A VTF + TV E+ K++ + Sbjct 817 IVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRCVTFKEQPTVNEIASTPKTIKVF 876 Query 843 FELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPLGIDLDE 899 +ELD+ + +LN C + V+ ++ EF VV DA+ + L P EL + L + Sbjct 877 YELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQK 936 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDE 931 + +LFDE+GE LA +YC+F P++D+ Sbjct 937 LEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDD 968 >sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 1860 bits (4819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1067/2887 (37%), Positives = 1626/2887 (56%), Gaps = 127/2887 (4%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + + TVD +N + V + ++G+ G + DG +VTK K +++GK F+ N + Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSE 1624 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 ++A D L Y + L + KW+ + K A+NNC++ + L LQ + Sbjct 1625 DLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLN 1684 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF Q+A+ R+G A F +L+LA G+ D R+ + +F +L Sbjct 1685 LKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICD 1744 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 + CK CG +Q GV+AVM+ GTLS E + G + C+CGK+ + V+ + PF++ Sbjct 1745 FEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLIC 1802 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S PA +L G + A+ + G+ + GHY H+ +++ D + + K ++ G ++D Sbjct 1803 SNTPASVKLPKGVGS-ANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCL 1860 Query 1868 YKENSYTTTIKPV--TYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNAS 1924 Y +N T K V TY LD V E P L YY Y+T++ I + Sbjct 1861 YLKN-LKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGV 1919 Query 1925 FDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK + + D LN G+ E KVT +P GDVV Y +++G Sbjct 1920 YTNFKLIGHTV--CDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGC 1977 Query 1984 KLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC 2041 KP++W H + N TY ++ + N FDVLK +D +++ Sbjct 1978 ITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDISE 2027 Query 2042 EDLK-PVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 D K P +++ ++K +V +I+ + +K + + D+ ++ Sbjct 2028 SDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYDMWL 2079 Query 2101 DNSSLTIKKPNELSRVLGLKTLATH---GLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNI 2156 ++ N LSR + + T+ G+ V S+P D + KP N VV N Sbjct 2080 TGCRCVVRTANALSRAVNVPTIRKFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNK 2137 Query 2157 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 2216 ++ C N ++ + F LL + K T +A + + +F Sbjct 2138 ISACFN-----FIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNAFL 2188 Query 2217 YLKSPNFSKLINII--IWFLLLSVCLGSLIYSTAAL---GVLMSNLG-----------MP 2260 K ++ II I+ L + ++I+S L G L + +G + Sbjct 2189 TFKWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSLV 2248 Query 2261 SYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTA 2320 + C Y + N YC GSI C CL+G D LD Y +++ +Q ++ D A Sbjct 2249 TICDLYSIQDVGFKN----QYCNGSIACQFCLAGFDMLDNYKAIDVVQ-----YEADRRA 2299 Query 2321 F-------GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINL 2371 F +V E ++Y L+T +FY L +Q+ ++ + ++ W + L+++L Sbjct 2300 FVDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHWSVRLLVSL 2359 Query 2372 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 2431 M P +R YI ASF ++ + HV GC+ S C+ CYKRNR+ RV+C+TIV G+ Sbjct 2360 ANMLPAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMI 2419 Query 2432 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2491 R + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2420 RYYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTV 2479 Query 2492 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 2551 V + L++D+ GQ+TY+ + S FV+ NL + K ++V+V + + ++ Sbjct 2480 TDVKQVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DK 2537 Query 2552 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 2611 ++ +A+V+Y+Q + +PIL++D+ L++ V MFD YV+TF S F+V + L Sbjct 2538 ANFLNAAVFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA 2597 Query 2612 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 2670 L+ATA + + + + VL TF+S AR+ +DSDV+TK + + + + + +E+T +SC Sbjct 2598 LIATAHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESC 2657 Query 2671 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 2730 NN + TY K +N+ DLG I SA+H+ VAK ++ IW+V F LS + +++ Sbjct 2658 NNLVPTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLK 2717 Query 2731 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLI 2790 A K L +LT V+V+TT +LKGG + + ++ ++LV F+ + + Sbjct 2718 KACCKTGLKLELTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLV-CFIG--LWCL 2774 Query 2791 TPVHVMSKHTDFSSEIIG-YKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTN 2847 P + + K +DF + YK +D GV RD++ D CFANK FD W+ G Y+N Sbjct 2775 MPTYTVHK-SDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSN 2833 Query 2848 DKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTD 2907 ACP++ AV+ ++ G V +P +LR LHF+ SA G CYTP I Y++ Sbjct 2834 SMACPIVVAVVDQDFGSTVFNVPTKVLRY-GYHVLHFITHALSADGVQCYTPHSQISYSN 2892 Query 2908 FATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDG-SIIQFPN 2966 F S CVL++ CT+F A G P PYCY +++ + Y SL P RY L + I+ P Sbjct 2893 FYASGCVLSSACTMFAMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRLPE 2952 Query 2967 TYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNL 3026 EG VR+V T YCR G CE ++ G+C + +G WVLNNDYYRSLPG FCG D +L Sbjct 2953 VLREGLVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDL 3012 Query 3027 LTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFL 3086 + +F L QP+ L ++AS +AG I+A++V YY ++ +RAFG+Y+ +V N +++ Sbjct 3013 IYQLFKGLAQPVDFLALTASSIAGAILAVIVVLGFYYLIKLKRAFGDYTSIVFVNVIVWC 3072 Query 3087 MSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYII 3146 ++F +L + VY L VY++ Y Y T Y +++S + H+QW+VM+ ++P W + YI Sbjct 3073 VNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIS 3132 Query 3147 CISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNR 3206 + + H +W FS R++ + S TFEE AL TF++ K+ Y KL++ L +NR Sbjct 3133 VVVSNHAFWVFS--YCRQLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNR 3188 Query 3207 YLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNS-GSDVLYQPPQTSITSAVLQSG 3265 YL+LYNKY+Y+SG MDT +YREAAC LAKA++ F+N+ GSDVLYQPP S++++ LQSG Sbjct 3189 YLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSG 3248 Query 3266 FRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKS 3325 KM P+ KVE C+V VT G TLNGLWLDD VYCPRHVIC++ DM NP+Y +LL R + Sbjct 3249 IVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVT 3308 Query 3326 NHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSP 3385 + +F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P Sbjct 3309 SSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKP 3368 Query 3386 SGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFY 3445 G + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G+FY Sbjct 3369 QGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFY 3428 Query 3446 GPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL 3505 GP+ D Q Q D +VN +AWLYAA++N WF+ ++ DFN+ A+ + + Sbjct 3429 GPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQV 3488 Query 3506 TQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSG 3565 D V + L++ TG+++ + A++K L+NG GR I+GS EDE TP DV +Q +G Sbjct 3489 KSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAG 3545 Query 3566 VTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFA 3625 + QS R +KG W++ + ++ +W++F ++ N L + + + A Sbjct 3546 IKLQSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTN-MLSITFCALCVISLA 3604 Query 3626 MMFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVM 3684 M+ VKHKH +L ++++P L T+ Y N +V ++ + WL S+ + D V+ Sbjct 3605 MLLVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVI 3663 Query 3685 YASAVVL-LILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSN 3743 Y +++ ++ +T R++ D + + V+++V Y G+ L++ I + ++ S+ Sbjct 3664 YGMLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGT 3721 Query 3744 YSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 Y+ M A+ ++ V ++F ++ +++ Y F+GY +CY+GLF L+N Sbjct 3722 YTWTTALSMAAAK-VIAKWVAVNVLYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSL 3780 Query 3804 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMS 3863 FR+ LGVY+Y +S QE RYMN+ GL PPKNS +A LN KLLG+GG P I+V+ QSK++ Sbjct 3781 FRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLT 3840 Query 3864 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3923 DVKC + LL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + Sbjct 3841 DVKCANGGLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPA 3900 Query 3924 AVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVV 3976 AVD I ++C++ + LQA+ SEF ++ S+ + A++ ++A ++G + + Sbjct 3901 AVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEACSSGSANQQQ 3960 Query 3977 LKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTM 4036 LK+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M Sbjct 3961 LKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSM 4020 Query 4037 LRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALW 4096 +RKLDN ALN+I++NA GCVPLN IP A L +++PD + Y D TYA +W Sbjct 4021 VRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVW 4080 Query 4097 EIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSC 4154 +IQ + D+D QL EIS D + WPL++ A R N SA LQNNEL P L+ Sbjct 4081 QIQTIQDSDGTNKQLHEISDDCN----WPLVIIANRHNEVSATVLQNNELMPAKLKTQVV 4136 Query 4155 AAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCR 4214 +G QT T YYN + G+ V A+LSD+ LK+ + K DG + EL+PPC+ Sbjct 4137 NSGPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCK 4193 Query 4215 FVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAV 4274 F KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+V Sbjct 4194 FTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSV 4253 Query 4275 DAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHI 4334 D K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR + Sbjct 4254 DPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARV 4313 Query 4335 DHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSA 4394 +HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS Sbjct 4314 EHPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSK 4371 Query 4395 DAQSFLN 4401 D +FLN Sbjct 4372 DT-NFLN 4377 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + + Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNK--GEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + T + V L ++ +D Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFD 1425 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 208/932 (22%), Positives = 348/932 (37%), Gaps = 162/932 (17%) Query 69 VFIKRS---DARTAPHGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL-- 122 +F +RS R A + HV +L + + G+ +G +G+ +G ++P + +PV RK + Sbjct 130 LFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIAP 187 Query 123 ----LRKNGNKGA-------GGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTR 171 LRK G KGA GG + + K D D + +P F + Sbjct 188 WVMYLRKCGEKGAYIKDYKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKK---------AY 238 Query 172 ELMRELNGGAYTRYVDNNFCG-----PDGYPLECIKDLLARAGKASCTL-SEQLDFIDTK 225 L+R G YVD C DG LE D + KA + S++L F Sbjct 239 ALIRGYRGVKPLLYVDQYGCDYTGGLADG--LEAYADKTLQEMKALFPIWSQELPF---- 292 Query 226 RGVYCCREHEHEIAWYTERSEK-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVF 275 + +AW+ R + LQ+ I+ D +G P V+ Sbjct 293 ---------DVTVAWHVVRDPRYVMRLQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVY 343 Query 276 PLNSIIKTIQPRVE-----KKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKC--DHCGE 328 +SII V+ + D + V +C + + C D C Sbjct 344 ADDSIILRQHNLVDIMSCFYMEADAVVNAFYGV----DLKDCGFVMQFGYIDCEQDLCDF 399 Query 329 TSWQTGDFVKA-TCEFCGTENLTKEG-ATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAE 386 W G+ + C CG T + A + G LP N V+ A + G + S Sbjct 400 KGWVPGNMIDGFACTTCGHVYETGDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTL 458 Query 387 YHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEG 442 Y G + FGGCV+ + N W+P +++ G +TGVVG Sbjct 459 Y------------GQTVVYFGGCVY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCK 502 Query 443 SEGLNDNLL-EILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQ 501 + NL+ + L + V + G+ E + + S L+ +K Sbjct 503 AIVKETNLICKALYLDYVQ-HKCGNLHQRELLGV---------SDVWHKQLLLNRGVYKP 552 Query 502 IVESCGNFKVTKGKAKKGAWNI---GEQKSILSPLY-----------AFASEAARVVRSI 547 ++E+ F + + K + + G +L L AF A ++ ++ Sbjct 553 LLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQAFCDYAGKICHAV 612 Query 548 FSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQ 607 S++ E SV L AAI L+ +++D SD T+ +V Sbjct 613 VSKSKELLDVSVDSL-GAAIHYLNS------KIVDLAQHFSDFGTS-------FVSKIVH 658 Query 608 LTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTC 667 + T+ L VL + + F G I ++ S A G Sbjct 659 FFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYF---GKNIPRYASAVAQAFRSG----- 710 Query 668 AKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREET 727 AK +S++ F + I + G+K+ + G + HS L + Sbjct 711 AKVGLDSLRVTFIDGLSCFKIGRRRICLSGSKIYEVERG---LLHSSQL------PLDVY 761 Query 728 GLLMP---LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVC 784 L MP K ++ I+L+G + V + T L P E P V +C Sbjct 762 DLTMPSQVQKTKQKGIYLKGSGSDFSLADSVVEVVTTSLTPCGYS-----EPPKVADKIC 816 Query 785 INGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNIT 842 I + + + Y + + + A VTF + TV E+ K++ + Sbjct 817 IVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAGRCVTFKEQPTVNEIASTPKTIKVF 876 Query 843 FELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELL---TPLGIDLDE 899 +ELD+ + +LN C + V+ ++ EF VV DA+ + L P EL + L + Sbjct 877 YELDKDFNTILNTACGEFEVDDTVDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQK 936 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDE 931 + +LFDE+GE LA +YC+F P++D+ Sbjct 937 LEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDD 968 >sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus (strain 2) OX=76344 GN=1a PE=3 SV=1 Length=4416 Score = 1845 bits (4780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1097/2951 (37%), Positives = 1627/2951 (55%), Gaps = 173/2951 (6%) Query 1549 EVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIK 1608 +V + ++ LL+ + V TVD +N + V +G+ G + DG +VTK++ Sbjct 1543 KVASVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVR 1598 Query 1609 PHNSHEGKTFYV---LPNDDTLRV-EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGL 1664 H+GK F+ L D + V +AF + +P L +Y + L K W Sbjct 1599 CSAIHKGKVFFQYSGLSAADLVAVTDAFGF---DEPQLL-KYYNMLGMCK-WPVVVCGNY 1653 Query 1665 TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGE 1724 + K ++NNCY+ A L LQ + LKF+ Q+A+ R+G+ F +L+LA + E Sbjct 1654 FAFKQSNNNCYINVACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNE 1713 Query 1725 LGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQ 1784 D + M + + A+L VCK CG +Q KGV+AVM+ GTL KG Sbjct 1714 PSDSTDFMRVVLREADLSGATCDFEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYT 1772 Query 1785 IPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKET 1844 I CTCG + + Q PF++ S P +L A+ +TG GHY H+ K Sbjct 1773 IACTCGNKLV-HCTQLNVPFLICSNKPEGKKLPDDVVA-ANIFTGG-SLGHYTHVKCKPK 1829 Query 1845 LYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKD 1903 D ++K SE KG TD Y +N T + K T+ LD V C E +P L YY + Sbjct 1830 YQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCES 1889 Query 1904 NSYFTEQPIDLVPNQPYPNAS--FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFF 1960 Y+T +PI + + + NFK V +I A+ N G+ E K+T + Sbjct 1890 GKYYT-KPIIKAQFRTFEKVEGVYTNFKLVGHSI--AEKFNAKLGFDCNSPFTEYKITEW 1946 Query 1961 PDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWST 2016 P GDVV Y + G KP++W H + TY +P+ C ++ Sbjct 1947 PTATGDVVLASDDLYVSRYSGGCVTFGKPVIWLGHEEASLKSLTYFNRPSVVC-ENKFNV 2005 Query 2017 KPVETSNSFD-------VLKSEDAQG---MDNLACEDLKPVSEEVVENPT---------I 2057 PV+ S D VL + G A E S+ VV+ Sbjct 2006 LPVDVSEPTDKGPVPAAVLVTGALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGA 2065 Query 2058 QKDVLECNV----KTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNEL 2113 DV E + K +V +++ + K+ + + D+ ++ + NEL Sbjct 2066 TVDVKEVKLNGVKKPIKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANEL 2125 Query 2114 SRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNR---------- 2163 SR+ VNS T+ Y K + K+V ++ R + Sbjct 2126 SRL-------------VNS---PTVREYVKWGMTKIVIPAKLVLLRDEKQEFVAPKVVKA 2169 Query 2164 ---VCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 C + + +FF F N+ K T +A K C A N L++ Sbjct 2170 KVIACYSAVKWFFLYCFSWIKF----NTDNKVIYTTEVAS---KLTFNLCCLAFKNALQT 2222 Query 2221 PNFSKLIN--------IIIWF-------LLLSVCLGSLIYSTAALGVLMS----NLGMPS 2261 N++ + ++WF +L L ++ + +G +++ G+ + Sbjct 2223 FNWNVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFT 2282 Query 2262 YCTGYR---EGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFK 2315 C Y+ GY +S +C GS+ C +C SG D LD Y ++ +Q + SF Sbjct 2283 LCDLYQVSDVGYRSS-------FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFD 2335 Query 2316 WDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQ 2373 + ++ F LV E + Y L+T FY L MQL ++ F+ + W + + Sbjct 2336 Y-ISLFKLVVELVIGYSLYTVCFYPLFGLIGMQLLTTWLPEFFMLETMHWSARFFVFVAN 2394 Query 2374 MAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRS 2433 M P ++R YI + Y ++ HV+ GC+ C+ CYKRNR+ RV+C+T+V G R Sbjct 2395 MLPAFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRY 2454 Query 2434 FYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDS 2493 + V ANGG GFC H WNC+NC F G+TFI+ E A DLS + KRP+NPTD + Y+V Sbjct 2455 YDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTE 2514 Query 2494 VTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESS 2553 V S+ L++++ GQ+ Y+ S S FV+++ L + KG +V+V + ++ +++ Sbjct 2515 VKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAG 2572 Query 2554 AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLV 2613 +A+V+Y+Q + +P+LL+++ L++ V+ MFD YV++ +V + L + V Sbjct 2573 FLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFV 2632 Query 2614 ATAEAELAKNVSLDNVLSTFISAARQG-FVDSDVETKDVVECLKLSHQSDIEVTGDSCNN 2672 A L + V L+ V+ TFI AR+ +DSDVETK + + + + + ++ T +SCNN Sbjct 2633 NAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNN 2692 Query 2673 YMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSA 2732 + TY K + + DLG I +A+H+ A VAK+ N+A IW+V F LS L+ ++R A Sbjct 2693 LVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKA 2752 Query 2733 AKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITP 2792 K L KLT V ++TT +LKGG + + L+ L V L+ V + + P Sbjct 2753 CSKTGLKIKLTYNKQEANVPILTTPFSLKGGAVFSKVLQWLFVVNLICFIV---LWALMP 2809 Query 2793 VHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKA 2850 + + K +K ID GV RD+ TD CFANK FD W+ G Y N +A Sbjct 2810 TYAVHKSDMQLPLYASFKVIDNGVLRDVTVTDACFANKFIQFDQWYESTFGLVYYRNSRA 2869 Query 2851 CPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFAT 2910 CP++ AVI +++G+ + +P +LR LHF+ F+ CYTP I Y +F Sbjct 2870 CPVVVAVIDQDIGYTLFNVPTKVLR-YGFHVLHFITHAFATDSVQCYTPHMQIPYDNFYA 2928 Query 2911 SACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYL 2969 S CVL++ CT+ A G P PYCY ++ + Y+SL P RY L + + I+FP Sbjct 2929 SGCVLSSLCTMLAHADGTPHPYCYTEGIMHNASLYDSLAPHVRYNLANSNGYIRFPEVVS 2988 Query 2970 EGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTN 3029 EG VR+V T YCR G CE +E GVC + + WVLNN YYR++PG FCG +A +L+ Sbjct 2989 EGIVRIVRTRSMTYCRVGLCEDAEEGVCFNFNSSWVLNNPYYRAMPGTFCGRNAFDLIHQ 3048 Query 3030 MFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSF 3089 + L++PI ++AS VAG I+AI+V YY ++ +RAFG+Y+ VV N +++ ++F Sbjct 3049 VLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINF 3108 Query 3090 TVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICIS 3149 +L + VY L +Y+ Y Y T Y +++S + H+QW+VM+ ++P W I Y+ + Sbjct 3109 LMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCIIYVAVVV 3168 Query 3150 TKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLA 3209 + H W FS R++ S TFEE +L TF++ KE Y KL++ V +NRYL+ Sbjct 3169 SNHALWLFS--YCRKLGTEVRSDGTFEEMSLTTFMITKESYCKLKNSV--SDVAFNRYLS 3224 Query 3210 LYNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRK 3268 LYNKY+YFSG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S+T++ LQSG K Sbjct 3225 LYNKYRYFSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVK 3284 Query 3269 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHN 3328 M FP+ KVE C+V VT G TLNGLWLDD VYCPRHVIC+S DM +P+Y +LL R + + Sbjct 3285 MVFPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYSNLLCRVISSD 3344 Query 3329 FLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3388 F V +G + L V+ + MQ +L L V NP TPKY F ++PG+TF+VLA YNG G Sbjct 3345 FCVMSGRMSLTVMSYQMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGKSQGA 3404 Query 3389 YQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPF 3448 + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ Sbjct 3405 FHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPY 3464 Query 3449 VDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3508 D Q Q D T TVNV+AWLYAA++N WF+ + +L +FN+ AM + + D Sbjct 3465 RDAQVVQLPVQDYTQTVNVVAWLYAAILNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKAD 3524 Query 3509 HVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTF 3568 V L L++ TG+ V + A++K L +G G+ ILGS +LEDE TP DV +Q +GV Sbjct 3525 LV--LDALASMTGVTVEQILAAIKRLY-SGFQGKQILGSCVLEDELTPSDVYQQLAGVKL 3581 Query 3569 QSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMF 3628 QS R +KGT W+L + L ++ +W++F ++ + L + + +FAM+ Sbjct 3582 QSKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTH-MLGVTLCALCFVSFAMLL 3640 Query 3629 VKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYAS 3687 VKHKH +L +F++P L T+ Y N +V S+ WL ++ + D V+Y Sbjct 3641 VKHKHLYLTMFIMPVLCTLFYTNYLVVYKQSFRGLAYAWLSHFVPAVD-YTYMDEVLY-- 3697 Query 3688 AVVLLILM---TARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNY 3744 VVLL+ M T R++ D ++ + +++LV Y+G L++ + ++ + S+ Y Sbjct 3698 GVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTY 3755 Query 3745 SGVVTTVMFLARG-IVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 + TT++ LA ++ + ++F ++ ++L Y +GY C CY+G+ LLN Sbjct 3756 TW--TTMLSLATAKVIAKWLAVNVLYFTDVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSI 3813 Query 3804 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMS 3863 FR+ LGVY+Y +S QE RYMN+ GL PP+NS +A LN KLLG+GG P I+V+ +QS+++ Sbjct 3814 FRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQSRLT 3873 Query 3864 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3923 DVKC +VVLL+ LQ L + SSSKLW C LHN+IL D + AF+K+ LL VL + Sbjct 3874 DVKCVNVVLLNCLQHLHIASSSKLWQYCSTLHNEILATSDLSVAFDKLAQLLVVLFANPA 3933 Query 3924 AVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVV 3976 AVD I ++ ++ + + LQA+ SEF ++ S+ + A++ ++A A+G + + Sbjct 3934 AVDSKCLASIEEVSDDYVRDSTVLQALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQ 3993 Query 3977 LKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTM 4036 +K+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M Sbjct 3994 IKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSM 4053 Query 4037 LRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALW 4096 +RKLDN ALN+I++NA GCVPLN IP T+ L +++PD + D TYA +W Sbjct 4054 IRKLDNQALNSILDNAVKGCVPLNAIPSLTSNTLTIIVPDKQVFDQVVDNVYVTYAGNVW 4113 Query 4097 EIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSC 4154 IQ + DAD + QL+EI + N+ WPL++ A R N S+V LQNNEL P LR Sbjct 4114 HIQSIQDADGAVKQLNEIDV----NITWPLVIAANRHNEVSSVVLQNNELMPQKLRTQVV 4169 Query 4155 AAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCR 4214 +G+ T YYNTT G+ V A+LSD LK+ + K DG + EL+PPC+ Sbjct 4170 NSGSDMNCNTPTQ--CYYNTTGMGKIVYAILSDCDGLKYTKIVKEDGNCVV-LELDPPCK 4226 Query 4215 FVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAV 4274 F KG K+KYLYF+KG N L RG V+G+L++TVRLQAG ATE +NS + S CAF+V Sbjct 4227 FSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQAGTATEYASNSAIRSLCAFSV 4286 Query 4275 DAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHI 4334 D K Y DY+ GG P+TNCVKMLC H GTG AIT+ PEA +Q+S+GGAS C+YCR + Sbjct 4287 DPKKTYLDYIQQGGAPVTNCVKMLCDHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRV 4346 Query 4335 DHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSA 4394 +HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC QS Sbjct 4347 EHPDVDGLCKLRGKFVQVPLG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVGTGS-QFQSK 4404 Query 4395 DAQSFLNGFAV 4405 D +FLNGF V Sbjct 4405 DT-NFLNGFGV 4414 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/183 (33%), Positives = 83/183 (45%), Gaps = 21/183 (11%) Query 819 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 877 A KV F D V E+ + + I F LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVEFNDKPKVKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 878 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 934 AV TL P E + T + L+ + YLFDE GE +A MYCSF PD++ Sbjct 892 AVESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDE---- 947 Query 935 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 994 DC + + + + DD SAAL + QEED + Q V + D Sbjct 948 DCVAADVVDADENQGDDADD-----------SAALV-TDTQEEDGV-AKGQVGVAESDAR 994 Query 995 EDN 997 D Sbjct 995 LDQ 997 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/154 (34%), Positives = 82/154 (53%), Gaps = 4/154 (3%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA + E+ D + Sbjct 1267 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKN 1326 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQHEVLLAPLLS 1150 G +VG +G NL K L++VGP+ +G Q L+ AY++ N+ + ++ L+S Sbjct 1327 QGVCQVGECYESTGGNLCKTVLNIVGPDA-RGHGKQCYSFLERAYQHINKCDDVVTTLIS 1385 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 AGIF SL + V NV L +K+ +D Sbjct 1386 AGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFD 1419 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 84/343 (24%), Positives = 131/343 (38%), Gaps = 70/343 (20%) Query 59 GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGEI 114 GVLP+ +F + T HV +L + +G+ G +G +G VP V I Sbjct 120 GVLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLG-NGRFIGWFVP-VTAI 177 Query 115 PVAYRK-------VLLRKNGNKG---AGGHSYGADLKSFDLGDELGTDPYEDFQENWNTK 164 P AY K +LLRK GNKG +G + +D E D E+ N K Sbjct 178 P-AYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVE---DACEEVHLNPKGK 233 Query 165 HSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDT 224 +S L++ G ++D C G + ++D CTL E + Sbjct 234 YSRK-AYALLKGYRGVKSILFLDQYGCDYTGRLAKGLEDY------GDCTLEEMKELFP- 285 Query 225 KRGVYC-CREHEHEIAWYTERSEKS-YELQTPFEIKLAKKF-----DTFNGEC----PNF 273 V+C ++E +AW+ +R ++ LQT I+ D +G+ P Sbjct 286 ---VWCDSLDNEVVVAWHVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAH 342 Query 274 VFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQT 333 + N+I+K + PR+ + L Y +S E C T + CD T + Sbjct 343 LLAANAIVKRL-PRLVETML----------YTDSSVTE---FCYKTKL-CDCGFITQFGY 387 Query 334 GDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNS 376 D C+F G++P N + CP C S Sbjct 388 VDCCGDACDF-------------RGWVPGNMMDGFLCPGCSKS 417 >sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM) OX=11144 GN=1a PE=1 SV=1 Length=4474 Score = 1839 bits (4764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1080/2927 (37%), Positives = 1607/2927 (55%), Gaps = 153/2927 (5%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1610 VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAA 1669 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 + A + D L +Y S L K W + K ++NNCY+ A L LQ + Sbjct 1670 DLAAVKDAFGFDEPQLLQYYSMLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1728 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF + R+G+ F +L+LA + E D + + + A+L Sbjct 1729 LKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCD 1788 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 L +CK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF++ Sbjct 1789 LEFICK-CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLV-HCTQFNVPFLIC 1846 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1847 SNTPEGKKLPDDVVA-ANIFTGG-SVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCL 1904 Query 1868 YKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNAS-- 1924 Y +N T + TY LD V C P L YY + Y+T +PI + + Sbjct 1905 YLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVEGV 1963 Query 1925 FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK V +I A+ LN G+ E K+T +P GDVV Y + G Sbjct 1964 YTNFKLVGHDI--AEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGC 2021 Query 1984 KLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD------------- 2026 KP++W H + TY +P+ C ++ PV+ S D Sbjct 2022 VTFGKPVIWRGHEEASLKSLTYFNRPSVVC-ENKFNVLPVDVSEPTDRRPVPSAVLVTGA 2080 Query 2027 -------VLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVG------ 2073 + +E + AC V +++V + V VK ++ G Sbjct 2081 ASGADASAISTEPGTAKEQKACAS-DSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKPVK 2139 Query 2074 ---DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATH---GL 2127 +++ + K+ + + D+ ++ + NELSR++ T+ + G+ Sbjct 2140 WNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGM 2199 Query 2128 AAVNSVPWDTI--ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRS 2185 + + +P + + + + F+ V I C + +F F Sbjct 2200 SKL-IIPANLLLLRDEKQEFVAPKVVKAKAIA-------CYGAVKWFLLYCFSWIKF--- 2248 Query 2186 TNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIWF--LL 2235 N+ K T +A K K C A N L++ N+S + ++WF L Sbjct 2249 -NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLY 2304 Query 2236 LSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIATYCT 2283 +V L ++ + + + G+ + C Y+ GY +S +C Sbjct 2305 ANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSS-------FCN 2357 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRFFYV 2340 GS+ C +C SG D LD Y S+ +Q + SF + ++ F LV E + Y L+T FY Sbjct 2358 GSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDY-ISLFKLVVELVIGYSLYTVCFYP 2416 Query 2341 LGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 2398 L + MQL ++ F+ + W L + + M P ++R YI + Y V+ Sbjct 2417 LFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCR 2476 Query 2399 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 2458 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC+++ Sbjct 2477 HVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSW 2536 Query 2459 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 2518 G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y+ S Sbjct 2537 KPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSA 2596 Query 2519 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 2578 S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P+L++++ L++ Sbjct 2597 SLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLMVEKKLIT 2654 Query 2579 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 2638 V+ MFD YV + +V + L + V A L + V L+ V+ TF+ AR Sbjct 2655 TANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCAR 2714 Query 2639 QG-FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 2697 + +DSDVETK + + + + + +EVT +SCNN + TY K + + DLG I +A+ Sbjct 2715 RKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAK 2774 Query 2698 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 2757 H+ + VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++TT Sbjct 2775 HVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTP 2834 Query 2758 IALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVT 2817 +LKGG + + L+ L L+ V + + P + + K +K ID GV Sbjct 2835 FSLKGGAVFSRVLQWLFVANLICFIV---LWALMPTYAVHKSDMQLPLYASFKVIDNGVL 2891 Query 2818 RDIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILR 2875 RD++ TD CFANK FD W+ G Y N KACP++ AVI +++G + +P +LR Sbjct 2892 RDVSVTDACFANKFNQFDQWYESTFGLVYYRNSKACPVVVAVIDQDIGHTLFNVPTKVLR 2951 Query 2876 TTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYD 2935 LHF+ F+ CYTP I Y +F S CVL++ CT+ A G P PYCY Sbjct 2952 Y-GFHVLHFITHAFATDRVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHPYCYT 3010 Query 2936 TNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEA 2994 V+ + Y SL P RY L + I+FP EG VRVV T YCR G CE +E Sbjct 3011 EGVMHNASLYSSLVPHVRYNLASSNGYIRFPEVVSEGIVRVVRTRSMTYCRVGLCEEAEE 3070 Query 2995 GVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVA 3054 G+C + + WVLNN YYR++PG FCG +A +L+ + L+QPI ++AS VAG I+A Sbjct 3071 GICFNFNSSWVLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILA 3130 Query 3055 IVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTF 3114 I+V YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L +Y+ Y Y T Sbjct 3131 IIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTL 3190 Query 3115 YLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFST 3174 Y +++S + H+QW+VM+ ++P W I Y+ + + H W FS R++ + S T Sbjct 3191 YFPSEISVVMHLQWLVMYGAIMPLWFCITYVAVVVSNHALWLFS--YCRKIGTDVRSDGT 3248 Query 3175 FEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHL 3234 FEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC L Sbjct 3249 FEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTATYREAACSQL 3306 Query 3235 AKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGL 3293 AKA+ F+ N+G+DVLYQPP S+T++ LQSG KM P+ KVE C+V VT G TLNGL Sbjct 3307 AKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVSPTSKVEPCVVSVTYGNMTLNGL 3366 Query 3294 WLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLK 3353 WLDD VYCPRHVIC+S DM +P+Y +LL R ++ +F V + + L V+ + MQ +L L Sbjct 3367 WLDDKVYCPRHVICSSADMTDPDYPNLLCRVTSSDFCVMSDRMSLTVMSYQMQGSLLVLT 3426 Query 3354 VDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGF 3413 V NP TPKY F ++PG+TF+VLA YNG P G + MR + TIKGSFL GSCGSVG+ Sbjct 3427 VTLQNPNTPKYSFGVVKPGETFTVLAAYNGRPQGAFHVVMRSSHTIKGSFLCGSCGSVGY 3486 Query 3414 NIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYA 3473 + D V F YMH +EL TG H GTD GNFYGP+ D Q Q D T TVNV+AWLYA Sbjct 3487 VLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYA 3546 Query 3474 AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKE 3533 A++N WF+ + +L +FN+ AM + + D V L L++ TG+ V + A++K Sbjct 3547 AILNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQVLAAIKR 3604 Query 3534 LLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLV 3593 L +G G+ ILGS +LEDE TP DV +Q +GV QS R IKGT W+L + + Sbjct 3605 -LHSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQSKRTRVIKGTCCWILASTFLFCSI 3663 Query 3594 LVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMV 3653 + +W++F ++ + L + + FAM+ +KHKH +L ++++P L T+ Y N + Sbjct 3664 ISAFVKWTMFMYVTTH-MLGVTLCALCFVIFAMLLIKHKHLYLTMYIMPVLCTLFYTNYL 3722 Query 3654 YMPASWVMRIM--TWLDMVDTSLSGFKLKDCVMYASAVVLLILM---TARTVYDDGARRV 3708 + R + WL ++ + D V+Y VVLL+ M T R++ D + Sbjct 3723 VVGYKQSFRGLAYAWLSYFVPAVD-YTYMDEVLY--GVVLLVAMVFVTMRSINHDVFSTM 3779 Query 3709 WTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARG-IVFMCVEYCP 3767 + + +++LV Y+G L++ + ++ + S+ Y+ TT++ LA ++ + Sbjct 3780 FLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTYTW--TTMLSLATAKVIAKWLAVNV 3835 Query 3768 IFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQG 3827 ++F ++ ++L Y +GY C CY+G+ LLN FR+ LGVY+Y +S QE RYMN+ G Sbjct 3836 LYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANG 3895 Query 3828 LLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKL 3887 L PP+NS +A LN KLLG+GG P I+V+ +QS+++DVKC +VVLL+ LQ L + S+SKL Sbjct 3896 LRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQSRLTDVKCANVVLLNCLQHLHIASNSKL 3955 Query 3888 WAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATL 3941 W C LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + + L Sbjct 3956 WQYCSTLHNEILATSDLSVAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDNTVL 4015 Query 3942 QAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRK 4000 QA+ SEF ++ S+ + A++ ++A A+G + + +K+L+K+ N+AKS ++RD A+ RK Sbjct 4016 QALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARK 4075 Query 4001 LEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLN 4060 LE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN Sbjct 4076 LERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLN 4135 Query 4061 IIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSP 4120 IP T+ L +++PD + D TYA +W IQ + DAD + QL+EI ++++ Sbjct 4136 AIPPLTSNTLTIIVPDKQVFDQVVDNVYVTYAPNVWHIQSIQDADGAVKQLNEIDVNST- 4194 Query 4121 NLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGG 4178 WPL+++A R N S V LQNNEL P LR +G+ + YYNTT G Sbjct 4195 ---WPLVISANRHNEVSTVVLQNNELMPQKLRTQVVNSGSDMNC--NIPTQCYYNTTGTG 4249 Query 4179 RFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLN 4238 + V A+LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L Sbjct 4250 KIVYAILSDCDGLKYTKIVKEDGN-CVVLELDPPCKFSVQDVKGLKIKYLYFVKGCNTLA 4308 Query 4239 RGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKML 4298 RG V+G+L++TVRLQAG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKML Sbjct 4309 RGWVVGTLSSTVRLQAGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKML 4368 Query 4299 CTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCAN 4358 C H GTG AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P Sbjct 4369 CDHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IK 4427 Query 4359 DPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 DPV + L + VC VCG W+ CSC QS D +FLNGF V Sbjct 4428 DPVSYVLTHDVCQVCGFWRDGSCSCVGTGS-QFQSKDT-NFLNGFGV 4472 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 239/1025 (23%), Positives = 394/1025 (38%), Gaps = 219/1025 (21%) Query 2 ESLVPGFNEKTHVQLS---LPVLQ-------VRDVLVRGFGDSVEEVLSEARQHLKDGTC 51 E V G HV++ LP L+ +RD+ V + ++V + L+ G+ Sbjct 46 EPKVKGKTLVNHVRVDCSRLPALECCVQSAIIRDIFV---DEDPQKVEASTMMALQFGSA 102 Query 52 GLVEVEK----------GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQY 97 LV+ K GVLP+ +F + T HV +L + +G+ Sbjct 103 VLVKPSKRLSVQAWAKLGVLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCL 162 Query 98 GRSGETLGVLVPHVGEIPVAYRK------VLLRKNGNKGA---GGHSYGADLKSFDLGDE 148 G +G +G VP V IP ++ +LLRK GNKG+ G + +D E Sbjct 163 G-NGRFIGWFVP-VTAIPEYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVE 220 Query 149 LGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARA 208 D E+ N K+S L+R G +VD C G C+ L Sbjct 221 ---DACEEVHLNPRGKYSCK-AYALLRGYRGVKPILFVDQYGCDYTG----CLAKGLEDY 272 Query 209 GKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKS-YELQTPFEIKLAKKF---- 263 G TLSE + R ++E +AW+ +R ++ LQT ++ + Sbjct 273 GDL--TLSEMKELSPVWRDSL---DNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPI 327 Query 264 -DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLS 318 D +G+ P + N+I+K + PR+ + L Y +S E C Sbjct 328 EDMVDGDVVMREPAHLLAPNAIVKRL-PRLVETML----------YTDSSVTE---FCYK 373 Query 319 TLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPAC----- 373 T + CD CG + Q G +V + CG G++P N + CP C Sbjct 374 TKL-CD-CGFIT-QFG-YVDCCGDTCGFR----------GWVPGNMMDGFPCPGCCKSYM 419 Query 374 ------HNSEVGPEHSL--AEYHNESGLKTILRKGGRTIAFGGCVF--SYVGCHNKCAYW 423 +S V PE + + + ++ G + FGG + Y G W Sbjct 420 PWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPG------MW 473 Query 424 VPRASANIGC----NHTGVVG-EGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILA 478 +P +++ +TGVVG + D + L + V + G+ E+ AI+ Sbjct 474 LPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRFLYMDYVQ-HKCGNL---EQRAIL-- 527 Query 479 SFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFAS 538 GLD +Q++ + G++ + +L + F Sbjct 528 --------------GLDDVYHRQLLVNRGDYSL-----------------LLENVDLFVK 556 Query 539 EAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDA-MMFTSDLATNNLVV 597 R+ F+ T + + L +LDG+ S LI + FTS + + V Sbjct 557 R-----RAEFACKFATCGDGLVPL------LLDGLVPRSYYLIKSGQAFTSLMVNFSREV 605 Query 598 ------MAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRD------G 645 MA + V++ ++++ + G V + K + + K E + D G Sbjct 606 VDMCMDMALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVRKITEWFDLAVDTAASAAG 665 Query 646 WEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNL 705 W + ++ V ++T +E+ E V+ F F + DS+ + ++ Sbjct 666 WLCYQLVN--GLFAVANGVITFIQEVPELVKNFVDKFKTFFKVLIDSMSV------SILS 717 Query 706 GETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVL---TEEVVLKTGD 762 G T V + R C+ A ++ + ++LP ++ E G+ Sbjct 718 GLTVVKTASN--RVCL-------------AGSKVYEVVQKSLPAYIMPVGCSEATCLVGE 762 Query 763 LQP--LEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEK-YCALAPN----MMVTNNTFTL 815 ++P E + V+APL C +I +K Y A + ++V N+T + Sbjct 763 IEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGV 822 Query 816 KGG------APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEV 868 A KV F D V EV + + I F LD D VL++ CS + V+ + Sbjct 823 LDQCWRFPCAGKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL 882 Query 869 NEFACVVADAVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFY 925 +E VV DAV TL P E + T + L+ YLFDE GE +AS MYCSF Sbjct 883 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFS 942 Query 926 PPDED 930 PDED Sbjct 943 APDED 947 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/153 (34%), Positives = 82/153 (54%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA A E+ D + Sbjct 1319 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKA 1378 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNV--NKGEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G +VGG +G L K L++VGP+ + E LL+ AY++ N+ + ++ L+SA Sbjct 1379 QGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISA 1438 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + V NV L +++ +D Sbjct 1439 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFD 1471 Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 86/217 (40%), Gaps = 33/217 (15%) Query 1596 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLR-VEAFEYYHTTDPSFLGRYMSALNHTK 1654 P ++ D+ K++ E +T P D T V AF+ ++ S S H K Sbjct 1047 PDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFK 1106 Query 1655 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 1714 V G S NC+L + L+ +Q + L+F +Q + +AG F + Sbjct 1107 ------VCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKL 1160 Query 1715 LAYCNKTV-----GELGDVRETMSYLFQHANLDSC--KRVLNVVCKTCGQQQTTLKGVEA 1767 + K++ G + D +Y F L C K N C CG + L+G++A Sbjct 1161 VKSAPKSIILPQGGYVAD----FAYFF----LSQCSFKVHANWRCLKCG-MELKLQGLDA 1211 Query 1768 VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 1804 V + G + V C CG T L+ + P+ Sbjct 1212 VFFYGDV--------VSHMCKCGNSMT--LLSADIPY 1238 >sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus (strain A59) OX=11142 GN=1a PE=1 SV=1 Length=4468 Score = 1838 bits (4760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1089/2928 (37%), Positives = 1609/2928 (55%), Gaps = 162/2928 (6%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + V TVD +N + V +G+ G + DG +VTK++ ++GK F+ + Sbjct 1611 VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEA 1670 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 + A + D L +Y + L K W + K ++NNCY+ A L LQ + Sbjct 1671 DLVAVKDAFGFDEPQLLKYYTMLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1729 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1730 LKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCN 1789 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 L VCK CG +Q KGV+AVM+ GTL +G I CTCG + + Q PF++ Sbjct 1790 LEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFLIC 1847 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S P +L A+ +TG GHY H+ K D + K SE KG TD Sbjct 1848 SNTPEGRKLPDDVVA-ANIFTGG-SVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCL 1905 Query 1868 YKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--NAS 1924 Y +N T + T+ LD V C E P L YY + Y+T +PI + + + Sbjct 1906 YLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVDGV 1964 Query 1925 FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK V +I A+ LN G+ E K+T +P GDVV Y + G Sbjct 1965 YTNFKLVGHSI--AEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGC 2022 Query 1984 KLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFDV-----------L 2028 KP+VW H + TY +P+ C ++ PV+ S D + Sbjct 2023 ITFGKPVVWLGHEEASLKSLTYFNRPSVVC-ENKFNVLPVDVSEPTDKGPVPAAVLVTGV 2081 Query 2029 KSEDAQGMDNLACEDLKPVSE--------EVVENPTIQ-KDVLECNV----KTTEVVGDI 2075 DA +A E S EV + P++ DV E + K +V G + Sbjct 2082 PGADASAGAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSV 2141 Query 2076 ILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 2135 ++ + K+ + + D+ ++ + NELSR+ VNS Sbjct 2142 VVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRL-------------VNS--- 2185 Query 2136 DTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLCTF 2182 T+ Y K + K+V+ ++ R + C + +F F Sbjct 2186 PTVREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWIKF 2245 Query 2183 TRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIW-- 2232 N+ K T +A K K C A N L++ N+S + ++W Sbjct 2246 ----NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFN 2298 Query 2233 FLLLSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIAT 2280 FL +V L + + + G+ + C Y+ GY +S Sbjct 2299 FLYANVILSDFYLPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS------- 2351 Query 2281 YCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRF 2337 +C GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T Sbjct 2352 FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDY-ISLFKLVVELVIGYSLYTVC 2410 Query 2338 FYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWK 2395 FY L + MQL ++ F+ + W L + + M P ++R YI + Y V+ Sbjct 2411 FYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYC 2470 Query 2396 SYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNC 2455 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC Sbjct 2471 LCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNC 2530 Query 2456 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYER 2515 +++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y+ Sbjct 2531 NSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDD 2590 Query 2516 HSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQA 2575 + S FV+++ L + KG +V+V + ++ +++ A+V+Y+Q + +P+L++++ Sbjct 2591 VNASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVEKK 2648 Query 2576 LVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFIS 2635 L++ V+ MFD YV++ + +V + L + V A L + V L+ V+ TFI Sbjct 2649 LITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIG 2708 Query 2636 AARQG-FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 2694 AR+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I Sbjct 2709 CARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQN 2768 Query 2695 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 2754 +A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++ Sbjct 2769 NAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPIL 2828 Query 2755 TTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDG 2814 TT +LKGG + + L+ L L+ V + + P + + K +K ID Sbjct 2829 TTPFSLKGGAVFSRMLQWLFVANLICFIV---LWALMPTYAVHKSDMQLPLYASFKVIDN 2885 Query 2815 GVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGT 2872 GV RD++ TD CFANK FD W+ G Y N KACP++ AVI +++G + +P T Sbjct 2886 GVLRDVSVTDACFANKFNQFDQWYESTFGLAYYRNSKACPVVVAVIDQDIGHTLFNVPTT 2945 Query 2873 ILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPY 2932 +LR LHF+ F+ CYTP I Y +F S CVL++ CT+ A G P PY Sbjct 2946 VLR-YGFHVLHFITHAFATDSVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHPY 3004 Query 2933 CYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCER 2991 CY V+ + Y SL P RY L + I+FP EG VRVV T YCR G CE Sbjct 3005 CYTGGVMHNASLYSSLAPHVRYNLASSNGYIRFPEVVSEGIVRVVRTRSMTYCRVGLCEE 3064 Query 2992 SEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGG 3051 +E G+C + + WVLNN YYR++PG FCG +A +L+ + L++PI ++AS VAG Sbjct 3065 AEEGICFNFNRSWVLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGA 3124 Query 3052 IVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLY 3111 I+AI+V YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L +Y+ Y Y Sbjct 3125 ILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFY 3184 Query 3112 LTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVS 3171 T Y +++S + H+QW+VM+ ++P W I Y+ + + H W FS R++ S Sbjct 3185 TTLYFPSEISVVMHLQWLVMYGAIMPLWFCIIYVAVVVSNHALWLFS--YCRKIGTEVRS 3242 Query 3172 FSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAAC 3231 TFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC Sbjct 3243 DGTFEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAAC 3300 Query 3232 CHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTL 3290 LAKA+ F+ N+G+DVLYQPP S+T++ LQSG KM P+ KVE C+V VT G TL Sbjct 3301 SQLAKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVSPTSKVEPCIVSVTYGNMTL 3360 Query 3291 NGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVL 3350 NGLWLDD VYCPRHVIC+S DM +P+Y +LL R ++ +F V +G + L V+ + MQ C L Sbjct 3361 NGLWLDDKVYCPRHVICSSADMTDPDYPNLLCRVTSSDFCVMSGRMSLTVMSYQMQGCQL 3420 Query 3351 KLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGS 3410 L V NP TPKY F ++PG+TF+VLA YNG P G + +R + TIKGSFL GSCGS Sbjct 3421 VLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSCGS 3480 Query 3411 VGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAW 3470 VG+ + D V F YMH +EL TG H GTD GNFYGP+ D Q Q D T TVNV+AW Sbjct 3481 VGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAW 3540 Query 3471 LYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAS 3530 LYAA+ N WF+ + +L +FN+ AM + + D V L L++ TG+ V + A+ Sbjct 3541 LYAAIFNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQVLAA 3598 Query 3531 LKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTS 3590 +K L +G G+ ILGS +LEDE TP DV +Q +GV QS R IKGT W+L + Sbjct 3599 IKR-LHSGFQGKQILGSCVLEDE-TPSDVYQQLAGVKLQSKRTRVIKGTCCWILASTFLF 3656 Query 3591 LLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYF 3650 ++ +W++F ++ + L + + +FAM+ +KHKH +L ++++P L T Sbjct 3657 CSIISAFVKWTMFMYVTTH-MLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTFYTN 3715 Query 3651 NMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILM---TARTVYDDGARR 3707 +V S+ WL ++ + D V+Y VVLL+ M T R++ D Sbjct 3716 YLVVYKQSFRGLAYAWLSHFVPAVD-YTYMDEVLY--GVVLLVAMVFVTMRSINHDVFSI 3772 Query 3708 VWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARG-IVFMCVEYC 3766 ++ + +++LV Y+G L++ + ++ + S+ Y+ TT++ LA ++ + Sbjct 3773 MFLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTYTW--TTMLSLATAKVIAKWLAVN 3828 Query 3767 PIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQ 3826 ++F ++ ++L Y +GY C CY+G+ LLN FR+ LGVY+Y +S QE RYMN+ Sbjct 3829 VLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNAN 3888 Query 3827 GLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSK 3886 GL PP+NS +A LN KLLG+GG P I+V+ +QS+++DVKC +VVLL+ LQ L + S+SK Sbjct 3889 GLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQSRLTDVKCANVVLLNCLQHLHIASNSK 3948 Query 3887 LWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRAT 3940 LW C LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + + Sbjct 3949 LWQYCSTLHNEILATSDLSMAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDNTV 4008 Query 3941 LQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQR 3999 LQA+ SEF ++ S+ + A++ ++A A+G + + +K+L+K+ N+AKS ++RD A+ R Sbjct 4009 LQALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVAR 4068 Query 4000 KLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPL 4059 KLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPL Sbjct 4069 KLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPL 4128 Query 4060 NIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNS 4119 N IP T+ L +++PD + D TYA +W IQ + DAD + QL+EI ++++ Sbjct 4129 NAIPSLTSNTLTIIVPDKQVFDQVVDNVYVTYAGNVWHIQFIQDADGAVKQLNEIDVNST 4188 Query 4120 PNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKG 4177 WPL++ A R N S V LQNNEL P LR +G+ T YYNTT Sbjct 4189 ----WPLVIAANRHNEVSTVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGT 4242 Query 4178 GRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNL 4237 G+ V A+LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L Sbjct 4243 GKIVYAILSDCDGLKYTKIVKEDGN-CVVLELDPPCKFSVQDVKGLKIKYLYFVKGCNTL 4301 Query 4238 NRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKM 4297 RG V+G+L++TVRLQAG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKM Sbjct 4302 ARGWVVGTLSSTVRLQAGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKM 4361 Query 4298 LCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCA 4357 LC H GTG AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P Sbjct 4362 LCDHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-I 4420 Query 4358 NDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 DPV + L + VC VCG W+ CSC QS D +FLNGF V Sbjct 4421 KDPVSYVLTHDVCQVCGFWRDGSCSCVGTGS-QFQSKDT-NFLNGFGV 4466 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/252 (27%), Positives = 118/252 (47%), Gaps = 20/252 (8%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV D+++ + V V+VN AN + HG GVAGA+ + +A E+ D + Sbjct 1320 ITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKA 1379 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQHEVLLAPLLS 1150 G +VG +G L K L++VGP+ +G Q LL+ AY++ N+ + ++ L+S Sbjct 1380 QGVCQVGECYESAGGKLCKKVLNIVGPDA-RGHGKQCYSLLERAYQHINKCDNVVTTLIS 1438 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1439 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQLAKNLCR 1498 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 +VK F+T + S+ ++C L+E + L ++ L ++ N + Sbjct 1499 DVK-FVTNACSSLFS--------ESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1549 Query 1264 HPDSATLVSDID 1275 P LV+ D Sbjct 1550 LPTDWRLVNKFD 1561 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 108/457 (24%), Positives = 188/457 (41%), Gaps = 59/457 (13%) Query 569 ILDGISQYSLRLIDA-MMFTSDLA------TNNLVVMAYITGGVVQLTSQWLTNIFGTVY 621 +LDG+ S LI + FTS + T+ + MA + V++ ++++ + G + Sbjct 576 LLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLA 635 Query 622 EKLKPVLDWLEEKFKEGVEFLRD------GWEIVKFISTCACEIVGGQIVTCAKEIKESV 675 + K + + K E + D GW + ++ V ++T +E+ E V Sbjct 636 VRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVN--GLFAVANGVITFVQEVPELV 693 Query 676 QTFFKLVNKFLALCADSI---IIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMP 732 + F F + DS+ I+ G + + SK +Y V + + +MP Sbjct 694 KNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSK-VYE--VVQKSLSAYVMP 750 Query 733 LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTPVCINGLML 790 + E L GE P V + + ++ P + + P +CI + Sbjct 751 VGC-SEATCLVGEIEPA-------VFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLY 802 Query 791 LEIKDTEKYCALAPN--MMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGYKSVNITFELDE 847 + + Y + N + V + + A KV F D V ++ + + ITF LD Sbjct 803 MAKCGDQFYPVVVDNDTVGVLDQCWRFPC-AGKKVEFNDKPKVRKIPSTRKIKITFALDA 861 Query 848 RIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPLGIDLDEWSMAT 904 D VL++ CS + V+ ++E VV DAV TL P E + T + LD + Sbjct 862 TFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDY 921 Query 905 YYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGA 964 YLFDE G+ +A MYCSF PD++ DC + + + + +DD A Sbjct 922 VYLFDEGGDEVIAPRMYCSFSAPDDE----DCVAADVVDADENQ---DDD---------A 965 Query 965 TSAALQPEEEQEED-----WLDDDSQQTVGQQDGSED 996 +A+ + QEED ++ DS+ V E+ Sbjct 966 EDSAVLVADTQEEDGVAKGQVEADSEICVAHTGSQEE 1002 >sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 133/2005 OX=389230 GN=1a PE=3 SV=1 Length=4441 Score = 1837 bits (4757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 955/2182 (44%), Positives = 1372/2182 (63%), Gaps = 55/2182 (3%) Query 2255 SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISS 2313 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+S Sbjct 2274 SYLGIRTLCDGLAVEYRN-TSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITS 2332 Query 2314 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINL 2371 + ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + L Sbjct 2333 YVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFL 2392 Query 2372 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 2431 V P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G + Sbjct 2393 VTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTK 2452 Query 2432 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2491 R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y V Sbjct 2453 RTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYV 2512 Query 2492 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKS 2547 DSV VK+ + L++++ G YER+ L +F NL+ L+ T +P N +++D Sbjct 2513 DSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTND 2572 Query 2548 KCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 2607 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V + Sbjct 2573 RGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRD 2632 Query 2608 KLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVT 2666 KL+ L+ TA + + VL TF AAR V+SDVET VV+ L+ +H++DI++T Sbjct 2633 KLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLT 2692 Query 2667 GDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 2726 + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ + Sbjct 2693 TECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFK 2752 Query 2727 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVN---NWLKQLIKVTL----- 2778 +QIR A +K N+PF+LT + R N+++ K + KIV +WL ++ +T+ Sbjct 2753 RQIRIACRKCNIPFRLTTSKLRAADNILSVKFS--ATKIVGGAPSWLLRVRDLTVKGYCI 2810 Query 2779 --VFLF-VAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFD 2835 +F+F VA + + P + ++ I+ YK I+ G+ RDIA D CFANK+ F Sbjct 2811 LTLFVFTVAVLSWFCLPSYSIATVNFNDDRILTYKVIENGIVRDIAPNDACFANKYGHFS 2870 Query 2836 TWFSQ-RGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGN 2894 WF++ GG Y N CP+ AVI G V +P T L + F+ RVF A N Sbjct 2871 KWFNENHGGVYRNSVDCPITIAVIAGVAGARVANVPAT-LAWVGRQIVLFVSRVF-ANTN 2928 Query 2895 ICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRY 2954 +C+TP+ I Y F+ S CVL++ECT+F+DA G P+CYD VL G+ +Y ++P RY Sbjct 2929 VCFTPTNEIPYDTFSDSGCVLSSECTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRY 2988 Query 2955 VLMDGSI-IQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRS 3013 + D + I+FP E ++R+ T ++YCR G+CE S AGVC+ST+G W L N Y + Sbjct 2989 DMYDSDMYIKFPEVIFESTLRITKTLATQYCRFGSCEESAAGVCISTNGSWALYNQNYST 3048 Query 3014 LPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGE 3073 PG++CG D +++ + L QP+ +S S+ G ++ + +T YY + +RA + Sbjct 3049 RPGIYCGDDYFDIVRRLAVSLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALAD 3108 Query 3074 YSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFT 3133 Y+ + L++ LC L Y+ +Y Y TFYLT + +F+ HI W VMF Sbjct 3109 YTQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFG 3168 Query 3134 PLVPFWITIAYIICISTKHFYWFFSNYLKRRV-VF-NGVSFSTFEEAALCTFLLNKEMYL 3191 +VP W+ +Y + + +H +W + + K+ V VF +G +F++AA F++ K+ Y+ Sbjct 3169 TVVPIWMLASYTVGVMLRHLFWVLAYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYV 3228 Query 3192 KLRSDVLLPLTQ--YNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVL 3249 LR+ +TQ + RYL+L+NKYKY+SGAMDT SYREA HL KAL +S +GSD+L Sbjct 3229 ALRN----AITQDSFVRYLSLFNKYKYYSGAMDTASYREACAAHLCKALQTYSETGSDIL 3284 Query 3250 YQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTS 3309 YQPP S+TS+VLQSG KM+ PSG VE C+VQVTCG+ TLNGLWLD+ V+CPRH++C + Sbjct 3285 YQPPNCSVTSSVLQSGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPA 3344 Query 3310 EDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKF 3366 + + +PNY+ LLI K+NH+F+VQ LRV+ HSM +LKL VD ANP TP Y F Sbjct 3345 DQLTDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTF 3404 Query 3367 VRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMH 3426 ++PG +FSVLACYNG P+GV+ +R N TIKGSFL GSCGSVG+ + ++F YMH Sbjct 3405 STVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVLNFVYMH 3464 Query 3427 HMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRF 3486 MEL G H G+ +G YG F D+QT Q TD T+NV+AWLYAAV+NG +WF+ Sbjct 3465 QMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPT 3524 Query 3487 TTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTIL 3545 + +N A+ + E + +D+L + +TG++V M A+++ L G G+TIL Sbjct 3525 RVGIVTYNEWALSNQFTEFVGTQSIDML---AHRTGVSVEQMLAAIQSL-HAGFQGKTIL 3580 Query 3546 GSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFF 3605 G + LEDEFTP DV Q GV QS VKR G HWL+ T++ + + ++Q T+++++ + Sbjct 3581 GQSTLEDEFTPDDVNMQVMGVVMQSGVKRISYGFMHWLMSTLVLAYVSVMQLTKFTMWTY 3640 Query 3606 LYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVM 3661 L+E + A M VKHKH FL LFLLP + Y N+VY P +S ++ Sbjct 3641 LFETIPTQMTPLLFGFMACVMFTVKHKHTFLSLFLLPVALCLTYANIVYEPQTLVSSTLI 3700 Query 3662 RIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKV 3721 + WL + L D +Y S +L ++ R + L + + Y Sbjct 3701 AVANWLTPTSVYMRTTHL-DFGLYISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTY 3759 Query 3722 YYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIML 3781 G+ I+ I ++TS+Y+ V + LA+ I + Y P ++ ++L Sbjct 3760 VIGDH-SSPITYLMFITTLTSDYTITVFATVNLAKFISGLVFLYAPHLGFILPEVKLVLL 3818 Query 3782 VYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLN 3841 +Y LGY CT YFG+F LLN R+ LGVYDY VSTQEFR++ GL P+NS +A LN Sbjct 3819 IYLCLGYMCTMYFGVFSLLNLKLRVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILN 3878 Query 3842 IKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLA 3901 KLLG+GG PCIKVATVQSK++D+KCTSVVLL+VLQQL +ES+SK W+ CV+LHN+IL A Sbjct 3879 FKLLGIGGTPCIKVATVQSKLTDLKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAA 3938 Query 3902 KDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQ 3961 D TEAFE+ V L + L+S VD++ L ++ +N + LQA +EFS L +YA TAQ Sbjct 3939 VDPTEAFERFVCLFATLMSFSANVDLDALANDLFENSSVLQATLTEFSHLATYAELETAQ 3998 Query 3962 EAYEQAVANGD-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED 4020 +Y++A+ +GD S VLK L+K++NVAK+ +++D A+ RKLE+MA+QAMT MYKQAR+ED Sbjct 3999 SSYQKALNSGDASPQVLKALQKAVNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAED 4058 Query 4021 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY 4080 K+AK+ SAMQTMLF M++KLDND LN +I NAR+GCVPL+I+PL + KL VVIPD + + Sbjct 4059 KKAKIVSAMQTMLFGMIKKLDNDVLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVW 4118 Query 4081 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRA-NSAVKL 4139 + + +YA +LW++ + + D+++V+ +++ ++ + +L WPL++ RA +SAVKL Sbjct 4119 NKVVNWPSVSYAGSLWDVTVINNVDNEVVKPTDV-VETNESLTWPLVIECSRASSSAVKL 4177 Query 4140 QNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKS 4199 QNNE+ P L+ M AG Q C+ +A+AYY +G R V+ LLS+ LKWA+ Sbjct 4178 QNNEIHPKGLKTMVVTAGIDQVNCS-SSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGK 4236 Query 4200 DGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATE 4259 D G I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQAG TE Sbjct 4237 D--GFINIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTE 4294 Query 4260 VPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQE 4319 +NSTVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PEA DQE Sbjct 4295 FASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQE 4354 Query 4320 SFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGY 4379 ++GGAS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC W GY Sbjct 4355 TYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGY 4413 Query 4380 GCSCDQLREPMLQSADAQSFLN 4401 GC+CD LR + + +FLN Sbjct 4414 GCNCDALRNNTVPQSKDTNFLN 4435 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 225/771 (29%), Positives = 367/771 (48%), Gaps = 46/771 (6%) Query 1391 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 1450 +C E A V ++ K + VD G +Y Y+++ + +I N + MP Sbjct 1352 ICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGC-PGICAMPF 1409 Query 1451 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 1510 GYVTHGL+L ++ Y+R +KVP ++S + + N + + +TPE FI ++ G Sbjct 1410 GYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGG 1467 Query 1511 YKDWSY-SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVITFDNL---KTLLSLR 1563 Y W SG + + L +++ Y N + + F +L + L+ R Sbjct 1468 YHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSR 1527 Query 1564 EVR--TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVL 1621 + I+V T+D +N T +++ + T+ +Q G T+ G D++ P G++ +V Sbjct 1528 AAQQVNIEVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFVA 1587 Query 1622 PN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 N ++ V EYY T+D +FL RY S ++WK+ +G+ S+K ++ NCY+ + Sbjct 1588 DNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATI 1647 Query 1681 LTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 1739 + + + ++KF PALQ+AY R + G+ +F ALI+AY + T D + + L A Sbjct 1648 MMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKA 1707 Query 1740 NLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLV 1798 L S K V C CG + G+ A +Y G S E+ + C CG + LV Sbjct 1708 ELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLV 1767 Query 1799 QQESPFVMMSAPPAQYELKHGTFTCASEYTGNY------QCGHYKHITSKETL-YCIDGA 1851 + +P++++S E+K T T N GHY H+ K+ L Y D Sbjct 1768 EHSTPWLLVSG---LNEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSG 1824 Query 1852 LLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQP 1911 LTK+S+ K +T V+Y + YT V Y LDGV E++P L NYY KD Y+T +P Sbjct 1825 SLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKP 1884 Query 1912 -IDLVPNQPYPNASFDNFKFV-CDNIKFADDL----NQLTGYK--KPASRELKVTFFPDL 1963 I P P + + N V D +D + N L G+ KP S++L + P+ Sbjct 1885 TIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNE 1944 Query 1964 NGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSN 2023 +GDV+ ++ +Y P +KKG L KPI+W N + A KPN +R L+ P+ N Sbjct 1945 DGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDN 2004 Query 2024 SFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTE---VVGDIILKPA 2080 + VL+ +Q + E PV E+V + ++E K V G+ Sbjct 2005 KYTVLQDNTSQLI-----EPNVPVVEDV---SITTRKLIEVKCKGLNKPFVKGNFSFVND 2056 Query 2081 NNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAV 2130 N + + + +G T+L A YVD N+ + + N S + L T+ + L V Sbjct 2057 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIV 2107 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 229/978 (23%), Positives = 411/978 (42%), Gaps = 100/978 (10%) Query 8 FNEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEVLSEARQHLKD-GTCGLVEVE-KGV 60 +NEK HV ++P+ D+ L F D E ++ LK+ G V + + Sbjct 21 YNEKRSDHVACTVPLCDTEDMASKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRA 79 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETL-----GVLVPHVGEIP 115 + L P V++ H +V +A + + TL G+ P+ + Sbjct 80 MKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLNVKPLGMFFPYDSSLE 139 Query 116 VAYRKVLLRKNGNKGAGGHSYGADLKS---FDLGDELGTDPYEDFQENWNTKHSSGVTRE 172 LLRKNG G D K ++ D+L DP + +N Sbjct 140 TGEHTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------ 187 Query 173 LMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSE-QLDF---IDTKRGV 228 L+++L GG VD CG +G P+ ++A+ G TL++ ++D +D+ R + Sbjct 188 LLKKLIGGDCIP-VDQYMCGKNGKPIADYAKIVAKEGLT--TLADIEVDVKSRMDSDRFI 244 Query 229 YCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQP-- 286 + + + W R Y QT F + + D P F + S I + P Sbjct 245 -VLNKKLYRVVWNVTRRNVPYSKQTAFTVVSVIQCDD-KESVPEHTFTIGSQILMVSPLK 302 Query 287 RVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGT 346 K + + + Y + + + S + C+ CG +W TG+ ++ CG Sbjct 303 ATNNKNFNLKQRLLHTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGA 362 Query 347 ENLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--T 403 + + G +P+NA+ CP +N H+ A+ ++ K + GG+ T Sbjct 363 NYSANDVDLQSSGLVPKNALFLANCPCANNGAC--SHNAAQVYSILDGKACVEVGGKSFT 420 Query 404 IAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKV 459 + FGG V++Y+GC + Y+VPRA + + + G G D ++E L+K + Sbjct 421 LTFGGVVYAYMGCCDGTMYFVPRAKSCVS-RIGDAIFTGCTGTWDKVVETANLFLEKAQH 479 Query 460 NINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAK 517 ++N F L E ++LA S +TS F E +++++ + N F VT G Sbjct 480 SLNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYI 536 Query 518 KGAWNIGE----QKSILSPLYAFA--SEAARVVRSI---FSRTLETAQN---SVRVLQKA 565 + A NIG +I +P AF E+ + V +I L++A + S + + Sbjct 537 RDAINIGANGVCNATINAPFIAFTGLGESFKKVAAIPWKICSNLKSALDYYCSNIMFRVF 596 Query 566 AITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYE--- 622 I ++ + L+D T V +Y V++ + + GTV Sbjct 597 PYDIPCDVNDFVELLLDCGKLT--------VATSYF---VLRYLDEKFDTVLGTVSNACQ 645 Query 623 -KLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKL 681 L L+ + F+ D +++ K + V A+ + VQ + Sbjct 646 TALSSFLNACVAASRATAGFISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDI 705 Query 682 VNKFLALCADSIIIGGAKLKALNL-GETFVTHSKGLYRKCVKSREET-----GLLMPLKA 735 ++K + L ++ G KL A+ G + + G Y C+ ++ +T L++P Sbjct 706 MSKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYF-CLSTKAKTLQDQMNLVLPGDY 764 Query 736 PKEIIFL-----EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLML 790 K+ + + +T+ + V + G L +PT+E + +VG V ++ + Sbjct 765 NKKTLGILDPVPNADTIDVTANSTVVDVVHGQL----EPTNEHGPSMIVGNYVLVSDKLF 820 Query 791 LEIKDTEKYCALAPNMMVTNNTFTLKGGAPT-KVTFGDDTVIEVQGYKSVNITFELDERI 849 + D E Y L N V + F LKGG P+ KVTFGD +EV Y+SV+IT+++ + Sbjct 821 VRTDDEEFY-PLCINGKVVSTLFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPVL 879 Query 850 DKVL-NEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLF 908 D +L + K + +TVE V +F V+ D V+ L P+ G D++++ Y++ Sbjct 880 DALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVY 939 Query 909 DESGEFKLASHMYCSFYP 926 ++ G+ +S+M S P Sbjct 940 NQDGDCAWSSNMTFSINP 957 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 107/176 (61%), Gaps = 8/176 (5%) Query 991 QDGSEDNQT-------TTIQTIVE-VQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKN 1042 QD + +NQ T +T VE VQP+ ++ + ++ S + + ++V + Sbjct 1117 QDEASENQVHQVPDLQCTSETKVEIVQPRQDLRPRRLRKSKVDLSKYKHTVINNSVTLVL 1176 Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 1102 D ++ A + V+VNAAN +LKHGGG+AGA+NKA+ +Q ESD+YI+ +GPL VG S Sbjct 1177 GDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISNSGPLHVGDS 1236 Query 1103 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADP 1158 +L G+ LA L VVGP+ ED LLK Y+ FN+H +++ PL+S+GIF DP Sbjct 1237 VLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGIFSVDP 1292 >sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 1837 bits (4757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1088/2929 (37%), Positives = 1617/2929 (55%), Gaps = 171/2929 (6%) Query 1549 EVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIK 1608 +V + ++ LL+ + V TVD +N + V +G+ G + DG +VTK++ Sbjct 1543 KVASVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVR 1598 Query 1609 PHNSHEGKTFYV---LPNDDTLRV-EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGL 1664 H+GK F+ L D + V +AF + +P L +Y + L K W Sbjct 1599 CSAIHKGKVFFQYSGLSAADLVAVTDAFGF---DEPQLL-KYYNMLGMCK-WPVVVCGNY 1653 Query 1665 TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGE 1724 + K ++NNCY+ A L LQ + LKF+ Q+A+ R+G+ F +L+LA + E Sbjct 1654 FAFKQSNNNCYINVACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNE 1713 Query 1725 LGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQ 1784 D + M + + A+L VCK CG +Q KGV+AVM+ GTL KG Sbjct 1714 PSDSTDFMRVVLREADLSGATCDFEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYT 1772 Query 1785 IPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKET 1844 I CTCG + + Q PF++ S P +L A+ +TG GHY H+ K Sbjct 1773 IACTCGNKLV-HCTQLNVPFLICSNKPEGKKLPDDV-VAANIFTGG-SLGHYTHVKCKPK 1829 Query 1845 LYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKD 1903 D ++K SE KG TD Y +N T + K T+ LD V C E +P L YY + Sbjct 1830 YQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCES 1889 Query 1904 NSYFTEQPIDLVPNQPYPNAS--FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFF 1960 Y+T +PI + + + NFK V +I A+ N G+ E K+T + Sbjct 1890 GKYYT-KPIIKAQFRTFEKVEGVYTNFKLVGHSI--AEKFNAKLGFDCNSPFTEYKITEW 1946 Query 1961 PDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWST 2016 P GDVV Y + G KP++W H + TY +P+ C ++ Sbjct 1947 PTATGDVVLASDDLYVSRYSGGCVTFGKPVIWLGHEEASLKSLTYFNRPSVVC-ENKFNV 2005 Query 2017 KPVETSNSFD-------VLKSEDAQG---MDNLACEDLKPVSEEVVEN---------PTI 2057 PV+ S D VL + G A E S+ VV+ Sbjct 2006 LPVDVSEPTDKGPVPAAVLVTGALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGA 2065 Query 2058 QKDVLECNV----KTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNEL 2113 DV E + K +V +++ + K+ + + D+ ++ + NEL Sbjct 2066 TVDVKEVKLNGVKKPIKVEDSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANEL 2125 Query 2114 SRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNR---------- 2163 SR+ VNS T+ Y K + K+V ++ R + Sbjct 2126 SRL-------------VNS---PTVREYVKWGMTKIVIPAKLVLLRDEKQEFVAPKVVKA 2169 Query 2164 ---VCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 C + + +FF F N+ K T +A K C A N L++ Sbjct 2170 KVIACYSAVKWFFLYCFSWIKF----NTDNKVIYTTEVAS---KLTFNLCCLAFKNALQT 2222 Query 2221 PNFSKLIN--------IIIWF-------LLLSVCLGSLIYSTAALGVLMS----NLGMPS 2261 N++ + ++WF +L L ++ + +G +++ G+ + Sbjct 2223 FNWNVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFT 2282 Query 2262 YCTGYR---EGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFK 2315 C Y+ GY +S +C GS+ C +C SG D LD Y ++ +Q + SF Sbjct 2283 LCDLYQVSDVGYRSS-------FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFD 2335 Query 2316 WDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQ 2373 + ++ F LV E + Y L+T FY L MQL ++ F+ + W + + Sbjct 2336 Y-ISLFKLVVELVIGYSLYTVCFYPLFGLIGMQLLTTWLPEFFMLETMHWSARFFVFVAN 2394 Query 2374 MAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRS 2433 M P ++R YI + Y ++ HV+ GC+ C+ CYKRNR+ RV+C+T+V G R Sbjct 2395 MLPAFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRY 2454 Query 2434 FYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDS 2493 + V ANGG GFC H WNC+NC F G+TFI+ E A DLS + KRP+NPTD + Y+V Sbjct 2455 YDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTE 2514 Query 2494 VTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESS 2553 V S+ L++++ GQ+ Y+ S S FV+++ L + KG +V+V + ++ +++ Sbjct 2515 VKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAG 2572 Query 2554 AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLV 2613 +A+V+Y+Q + +P+LL+++ L++ V+ MFD YV++ +V + L + V Sbjct 2573 FLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFV 2632 Query 2614 ATAEAELAKNVSLDNVLSTFISAARQG-FVDSDVETKDVVECLKLSHQSDIEVTGDSCNN 2672 A L + V L+ V+ TFI AR+ +DSDVETK + + + + + ++ T +SCNN Sbjct 2633 NAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNN 2692 Query 2673 YMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSA 2732 + TY K + + DLG I +A+H+ A VAK+ N+A IW+V F LS L+ ++R A Sbjct 2693 LVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKA 2752 Query 2733 AKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITP 2792 K L KLT V ++TT +LKGG + + L+ L V L+ V + + P Sbjct 2753 CSKTGLKIKLTYNKQEANVPILTTPFSLKGGAVFSKVLQWLFVVNLICFIV---LWALMP 2809 Query 2793 VHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKA 2850 + + K +K ID GV RD+ TD CFANK FD W+ G Y N +A Sbjct 2810 TYAVHKSDMQLPLYASFKVIDNGVLRDVTVTDACFANKFIQFDQWYESTFGLVYYRNSRA 2869 Query 2851 CPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFAT 2910 CP++ AVI +++G+ + +P +LR LHF+ F+ CYTP I Y +F Sbjct 2870 CPVVVAVIDQDIGYTLFNVPTKVLR-YGFHVLHFITHAFATDSVQCYTPHMQIPYDNFYA 2928 Query 2911 SACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYL 2969 S CVL++ CT+ A G P PYCY ++ + Y+SL P RY L + + I+FP Sbjct 2929 SGCVLSSLCTMLAHADGTPHPYCYTEGIMHNASLYDSLAPHVRYNLANSNGYIRFPEVVS 2988 Query 2970 EGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTN 3029 EG VR+V T YCR G CE +E GVC + + WVLNN YYR++PG FCG +A +L+ Sbjct 2989 EGIVRIVRTRSMTYCRVGLCEDAEEGVCFNFNSSWVLNNPYYRAMPGTFCGRNAFDLIHQ 3048 Query 3030 MFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSF 3089 + L++PI ++AS VAG I+AI+V YY ++ +RAFG+Y+ VV N +++ ++F Sbjct 3049 VLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINF 3108 Query 3090 TVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICIS 3149 +L + VY L +Y+ Y Y T Y +++S + H+QW+VM+ ++P W I Y+ + Sbjct 3109 LMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCIIYVAVVV 3168 Query 3150 TKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLA 3209 + H W FS R++ S TFEE +L TF++ KE Y KL++ V +NRYL+ Sbjct 3169 SNHALWLFS--YCRKLGTEVRSDGTFEEMSLTTFMITKESYCKLKNSV--SDVAFNRYLS 3224 Query 3210 LYNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRK 3268 LYNKY+YFSG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S+T++ LQSG K Sbjct 3225 LYNKYRYFSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVK 3284 Query 3269 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHN 3328 M FP+ KVE C+V VT G TLNGLWLDD VYCPRHVIC+S DM +P+Y +LL R + + Sbjct 3285 MVFPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYSNLLCRVISSD 3344 Query 3329 FLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3388 F V +G + L V+ + MQ +L L V NP TPKY F ++PG+TF+VLA YNG G Sbjct 3345 FCVMSGRMSLTVMSYQMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGKSQGA 3404 Query 3389 YQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPF 3448 + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ Sbjct 3405 FHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPY 3464 Query 3449 VDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3508 D Q Q D T TVNV+AWLYAA++N WF+ + +L +FN+ AM + + D Sbjct 3465 RDAQVVQLPVQDYTQTVNVVAWLYAAILNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKAD 3524 Query 3509 HVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTF 3568 V L L++ TG+ V + A++K L +G G+ ILGS +LEDE TP DV +Q +GV Sbjct 3525 LV--LDALASMTGVTVEQILAAIKRLY-SGFQGKQILGSCVLEDELTPSDVYQQLAGVKL 3581 Query 3569 QSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMF 3628 QS R +KGT W+L + L ++ +W++F ++ + L + + +FAM+ Sbjct 3582 QSKRTRVVKGTCCWILASTLLFCSIISAFVKWTMFMYVTTH-MLGVTLCALCFVSFAMLL 3640 Query 3629 VKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYAS 3687 VKHKH +L +F++P L T+ Y N +V S+ WL ++ + D V+Y Sbjct 3641 VKHKHLYLTMFIMPVLCTLFYTNYLVVYKQSFRGLAYAWLSHFVPAVD-YTYMDEVLY-- 3697 Query 3688 AVVLLILM---TARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNY 3744 VVLL+ M T R++ D ++ + +++LV Y+G L++ + ++ + S+ Y Sbjct 3698 GVVLLVAMVFVTMRSINHDVFSVMFLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTY 3755 Query 3745 SGVVTTVMFLARG-IVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 + TT++ LA ++ + ++F ++ ++L Y +GY C CY+G+ LLN Sbjct 3756 TW--TTMLSLATAKVIAKWLAVNVLYFTDVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSI 3813 Query 3804 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMS 3863 FR+ LGVY+Y +S QE RYMN+ GL PP+NS +A LN KLLG+GG P I+V+ +QS+++ Sbjct 3814 FRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALVLNFKLLGIGGVPVIEVSQIQSRLT 3873 Query 3864 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3923 DVKC +VVLL+ LQ L + SSSKLW C LHN+IL D + AF+K+ LL VL + Sbjct 3874 DVKCVNVVLLNCLQHLHIASSSKLWQYCSTLHNEILATSDLSVAFDKLAQLLVVLFANPA 3933 Query 3924 AVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVV 3976 AVD I ++ ++ + + LQA+ SEF ++ S+ + A++ ++A A+G + + Sbjct 3934 AVDSKCLASIEEVSDDYVRDSTVLQALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQ 3993 Query 3977 LKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTM 4036 +K+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M Sbjct 3994 IKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSM 4053 Query 4037 LRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALW 4096 +RKLDN ALN+I++NA GCVPLN IP T+ L +++PD + D TYA +W Sbjct 4054 IRKLDNQALNSILDNAVKGCVPLNAIPSLTSNTLTIIVPDKQVFDQVVDNVYVTYAGNVW 4113 Query 4097 EIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSC 4154 IQ + DAD + QL+EI + N+ WPL++ A R N S+V LQNNEL P LR Sbjct 4114 HIQSIQDADGAVKQLNEIDV----NITWPLVIAANRHNEVSSVVLQNNELMPQKLRTQVV 4169 Query 4155 AAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCR 4214 +G+ T YYNTT G+ V A+LSD LK+ + K DG + EL+PPC+ Sbjct 4170 NSGSDMNCNTPTQ--CYYNTTGMGKIVYAILSDCDGLKYTKIVKEDGNCVV-LELDPPCK 4226 Query 4215 FVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAV 4274 F KG K+KYLYF+KG N L RG V+G+L++TVRLQAG ATE +NS + S CAF+V Sbjct 4227 FSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQAGTATEYASNSAIRSLCAFSV 4286 Query 4275 DAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHI 4334 D K Y DY+ GG P+TNCVKMLC H GTG AIT+ PEA +Q+S+GGAS C+YCR + Sbjct 4287 DPKKTYLDYIQQGGAPVTNCVKMLCDHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRV 4346 Query 4335 DHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSC 4383 +HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC Sbjct 4347 EHPDVDGLCKLRGKFVQVPLG-IKDPVSYVLTHDVCQVCGFWRDGSCSC 4394 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/182 (33%), Positives = 83/182 (46%), Gaps = 21/182 (12%) Query 819 APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 877 A KV F D V E+ + + I F LD D VL++ CS + V+ ++E VV D Sbjct 832 AGKKVEFNDKPKVKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLD 891 Query 878 AVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 934 AV TL P E + T + L+ + YLFDE GE +A MYCSF PD++ Sbjct 892 AVESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDE---- 947 Query 935 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 994 DC + + + + DD SAAL + QEED + Q V + D Sbjct 948 DCVAADVVDADENQGDDADD-----------SAALV-TDTQEEDGV-AKGQVGVAESDAR 994 Query 995 ED 996 D Sbjct 995 LD 996 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/154 (34%), Positives = 82/154 (53%), Gaps = 4/154 (3%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA + E+ D + Sbjct 1267 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKN 1326 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQHEVLLAPLLS 1150 G +VG +G NL K L++VGP+ +G Q L+ AY++ N+ + ++ L+S Sbjct 1327 QGVCQVGECYESTGGNLCKTVLNIVGPDA-RGHGKQCYSFLERAYQHINKCDDVVTTLIS 1385 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 AGIF SL + V NV L +K+ +D Sbjct 1386 AGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFD 1419 Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust. Identities = 84/343 (24%), Positives = 131/343 (38%), Gaps = 70/343 (20%) Query 59 GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGEI 114 GVLP+ +F + T HV +L + +G+ G +G +G VP V I Sbjct 120 GVLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLG-NGRFIGWFVP-VTAI 177 Query 115 PVAYRK-------VLLRKNGNKG---AGGHSYGADLKSFDLGDELGTDPYEDFQENWNTK 164 P AY K +LLRK GNKG +G + +D E D E+ N K Sbjct 178 P-AYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVE---DACEEVHLNPKGK 233 Query 165 HSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDT 224 +S L++ G ++D C G + ++D CTL E + Sbjct 234 YSRK-AYALLKGYRGVKSILFLDQYGCDYTGRLAKGLEDY------GDCTLEEMKELFP- 285 Query 225 KRGVYC-CREHEHEIAWYTERSEKS-YELQTPFEIKLAKKF-----DTFNGEC----PNF 273 V+C ++E +AW+ +R ++ LQT I+ D +G+ P Sbjct 286 ---VWCDSLDNEVVVAWHVDRDPRAVMRLQTLATIRSIGYVGQPTEDLVDGDVVVREPAH 342 Query 274 VFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQT 333 + N+I+K + PR+ + L Y +S E C T + CD T + Sbjct 343 LLAANAIVKRL-PRLVETML----------YTDSSVTE---FCYKTKL-CDCGFITQFGY 387 Query 334 GDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNS 376 D C+F G++P N + CP C S Sbjct 388 VDCCGDACDF-------------RGWVPGNMMDGFLCPGCSKS 417 >sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 1835 bits (4754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1072/2905 (37%), Positives = 1595/2905 (55%), Gaps = 151/2905 (5%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1610 VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAA 1669 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 + A + D L +Y S L K W + K ++NNCY+ A L LQ + Sbjct 1670 DLAAVKDAFGFDEPQLLQYYSMLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1728 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF + R+G+ F +L+LA + E D + + + A+L Sbjct 1729 LKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCD 1788 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 L +CK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF++ Sbjct 1789 LEFICK-CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLV-HCTQFNVPFLIC 1846 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1847 SNTPEGKKLPDDV-VAANIFTGG-SVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCL 1904 Query 1868 YKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNAS-- 1924 Y +N T + TY LD V C P L YY + Y+T +PI + + Sbjct 1905 YLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVEGV 1963 Query 1925 FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK V +I A+ LN G+ E K+T +P GDVV Y + G Sbjct 1964 YTNFKLVGHDI--AEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGC 2021 Query 1984 KLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD------------- 2026 KP++W H + TY +P+ C ++ PV+ S D Sbjct 2022 VTFGKPVIWRGHEEASLKSLTYFNRPSVVC-ENKFNVLPVDVSEPTDRRPVPSAVLVTGA 2080 Query 2027 -------VLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVG------ 2073 + +E + AC V +++V + V VK ++ G Sbjct 2081 ASGADASAISTEPGTAKEQKACAS-DSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKPVK 2139 Query 2074 ---DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATH---GL 2127 +++ + K+ + + D+ ++ + NELSR++ T+ + G+ Sbjct 2140 WNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGM 2199 Query 2128 AAVNSVPWDTI--ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRS 2185 + + +P + + + + F+ V I C + +F F Sbjct 2200 SKL-IIPANLLLLRDEKQEFVAPKVVKAKAIA-------CYGAVKWFLLYCFSWIKF--- 2248 Query 2186 TNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIWF--LL 2235 N+ K T +A K K C A N L++ N+S + ++WF L Sbjct 2249 -NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLY 2304 Query 2236 LSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIATYCT 2283 +V L ++ + + + G+ + C Y+ GY +S +C Sbjct 2305 ANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSS-------FCN 2357 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRFFYV 2340 GS+ C +C SG D LD Y S+ +Q + SF + ++ F LV E + Y L+T FY Sbjct 2358 GSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDY-ISLFKLVVELVIGYSLYTVCFYP 2416 Query 2341 LGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 2398 L + MQL ++ F+ + W L + + M P ++R YI + Y V+ Sbjct 2417 LFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCR 2476 Query 2399 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 2458 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC+++ Sbjct 2477 HVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSW 2536 Query 2459 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSL 2518 G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y+ S Sbjct 2537 KPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSA 2596 Query 2519 SHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVS 2578 S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P+L++++ L++ Sbjct 2597 SLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLMVEKKLIT 2654 Query 2579 DVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR 2638 V+ MFD YV + +V + L + V A L + V L+ V+ TF+ AR Sbjct 2655 TANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCAR 2714 Query 2639 QG-FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 2697 + +DSDVETK + + + + + +EVT +SCNN + TY K + + DLG I +A+ Sbjct 2715 RKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAK 2774 Query 2698 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 2757 H+ + VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++TT Sbjct 2775 HVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTP 2834 Query 2758 IALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVT 2817 +LKGG + + L+ L L+ V + + P + + K +K ID GV Sbjct 2835 FSLKGGAVFSRVLQWLFVANLICFIV---LWALMPTYAVHKSDMQLPLYASFKVIDNGVL 2891 Query 2818 RDIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILR 2875 RD++ TD CFANK FD W+ G Y N KACP++ AVI +++G + +P +LR Sbjct 2892 RDVSVTDACFANKFNQFDQWYESTFGLVYYRNSKACPVVVAVIDQDIGHTLFNVPTKVLR 2951 Query 2876 TTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYD 2935 LHF+ F+ CYTP I Y +F S CVL++ CT+ A G P PYCY Sbjct 2952 Y-GFHVLHFITHAFATDRVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHPYCYT 3010 Query 2936 TNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEA 2994 V+ + Y SL P RY L + I+FP EG VRVV T YCR G CE +E Sbjct 3011 EGVMHNASLYSSLVPHVRYNLASSNGYIRFPEVVSEGIVRVVRTRSMTYCRVGLCEEAEE 3070 Query 2995 GVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVA 3054 G+C + + WVLNN YYR++PG FCG +A +L+ + L+QPI ++AS VAG I+A Sbjct 3071 GICFNFNSSWVLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILA 3130 Query 3055 IVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTF 3114 I+V YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L +Y+ Y Y T Sbjct 3131 IIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTL 3190 Query 3115 YLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFST 3174 Y +++S + H+QW+VM+ ++P W I Y+ + + H W FS R++ + S T Sbjct 3191 YFPSEISVVMHLQWLVMYGAIMPLWFCITYVAVVVSNHALWLFS--YCRKIGTDVRSDGT 3248 Query 3175 FEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHL 3234 FEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC L Sbjct 3249 FEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTATYREAACSQL 3306 Query 3235 AKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGL 3293 AKA+ F+ N+G+DVLYQPP S+T++ LQSG KM P+ KVE C+V VT G TLNGL Sbjct 3307 AKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVSPTSKVEPCVVSVTYGNMTLNGL 3366 Query 3294 WLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLK 3353 WLDD VYCPRHVIC+S DM +P+Y +LL R ++ +F V + + L V+ + MQ +L L Sbjct 3367 WLDDKVYCPRHVICSSADMTDPDYPNLLCRVTSSDFCVMSDRMSLTVMSYQMQGSLLVLT 3426 Query 3354 VDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGF 3413 V NP TPKY F ++PG+TF+VLA YNG P G + MR + TIKGSFL GSCGSVG+ Sbjct 3427 VTLQNPNTPKYSFGVVKPGETFTVLAAYNGRPQGAFHVVMRSSHTIKGSFLCGSCGSVGY 3486 Query 3414 NIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYA 3473 + D V F YMH +EL TG H GTD GNFYGP+ D Q Q D T TVNV+AWLYA Sbjct 3487 VLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYA 3546 Query 3474 AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKE 3533 A++N WF+ + +L +FN+ AM + + D V L L++ TG+ V + A++K Sbjct 3547 AILNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQVLAAIKR 3604 Query 3534 LLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLV 3593 L +G G+ ILGS +LEDE TP DV +Q +GV QS R IKGT W+L + + Sbjct 3605 -LHSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQSKRTRVIKGTCCWILASTFLFCSI 3663 Query 3594 LVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMV 3653 + +W++F ++ + L + + FAM+ +KHKH +L ++++P L T+ Y N + Sbjct 3664 ISAFVKWTMFMYVTTH-MLGVTLCALCFVIFAMLLIKHKHLYLTMYIMPVLCTLFYTNYL 3722 Query 3654 YMPASWVMRIM--TWLDMVDTSLSGFKLKDCVMYASAVVLLILM---TARTVYDDGARRV 3708 + R + WL ++ + D V+Y VVLL+ M T R++ D + Sbjct 3723 VVGYKQSFRGLAYAWLSYFVPAVD-YTYMDEVLY--GVVLLVAMVFVTMRSINHDVFSTM 3779 Query 3709 WTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARG-IVFMCVEYCP 3767 + + +++LV Y+G L++ + ++ + S+ Y+ TT++ LA ++ + Sbjct 3780 FLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTYTW--TTMLSLATAKVIAKWLAVNV 3835 Query 3768 IFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQG 3827 ++F ++ ++L Y +GY C CY+G+ LLN FR+ LGVY+Y +S QE RYMN+ G Sbjct 3836 LYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANG 3895 Query 3828 LLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKL 3887 L PP+NS +A LN KLLG+GG P I+V+ +QS+++DVKC +VVLL+ LQ L + S+SKL Sbjct 3896 LRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQSRLTDVKCANVVLLNCLQHLHIASNSKL 3955 Query 3888 WAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATL 3941 W C LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + + L Sbjct 3956 WQYCSTLHNEILATSDLSVAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDNTVL 4015 Query 3942 QAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRK 4000 QA+ SEF ++ S+ + A++ ++A A+G + + +K+L+K+ N+AKS ++RD A+ RK Sbjct 4016 QALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARK 4075 Query 4001 LEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLN 4060 LE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN Sbjct 4076 LERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLN 4135 Query 4061 IIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSP 4120 IP T+ L +++PD + D TYA +W IQ + DAD + QL+EI + Sbjct 4136 AIPPLTSNTLTIIVPDKQVFDQVVDNVYVTYAPNVWHIQSIQDADGAVKQLNEIDV---- 4191 Query 4121 NLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGG 4178 N WPL+++A R N S V LQNNEL P LR +G+ + YYNTT G Sbjct 4192 NSTWPLVISANRHNEVSTVVLQNNELMPQKLRTQVVNSGSDMNC--NIPTQCYYNTTGTG 4249 Query 4179 RFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLN 4238 + V A+LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L Sbjct 4250 KIVYAILSDCDGLKYTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLA 4308 Query 4239 RGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKML 4298 RG V+G+L++TVRLQAG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKML Sbjct 4309 RGWVVGTLSSTVRLQAGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKML 4368 Query 4299 CTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCAN 4358 C H GTG AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P Sbjct 4369 CDHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IK 4427 Query 4359 DPVGFTLKNTVCTVCGMWKGYGCSC 4383 DPV + L + VC VCG W+ CSC Sbjct 4428 DPVSYVLTHDVCQVCGFWRDGSCSC 4452 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 236/1025 (23%), Positives = 393/1025 (38%), Gaps = 219/1025 (21%) Query 2 ESLVPGFNEKTHVQLS---LPVLQ-------VRDVLVRGFGDSVEEVLSEARQHLKDGTC 51 E V G HV++ LP L+ +RD+ V + ++V + L+ G+ Sbjct 46 EPKVKGKTLVNHVRVDCSRLPALECCVQSAIIRDIFV---DEDPQKVEASTMMALQFGSA 102 Query 52 GLVEVEK----------GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQY 97 LV+ K GVLP+ +F + T HV +L + +G+ Sbjct 103 VLVKPSKRLSVQAWAKLGVLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCL 162 Query 98 GRSGETLGVLVPHVGEIPVAYRK------VLLRKNGNKGA---GGHSYGADLKSFDLGDE 148 G +G +G VP V IP ++ +LLRK GNKG+ G + +D E Sbjct 163 G-NGRFIGWFVP-VTAIPEYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVE 220 Query 149 LGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARA 208 D E+ N K+S L+R G +VD C G C+ L Sbjct 221 ---DACEEVHLNPRGKYSCK-AYALLRGYRGVKPILFVDQYGCDYTG----CLAKGLEDY 272 Query 209 GKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKS-YELQTPFEIKLAKKF---- 263 G TLSE + R ++E +AW+ +R ++ LQT ++ + Sbjct 273 GDL--TLSEMKELSPVWRDSL---DNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPI 327 Query 264 -DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLS 318 D +G+ P + N+I+K + PR+ + L + + + C Sbjct 328 EDMVDGDVVMREPAHLLAPNAIVKRL-PRLVETML-------------YTDSSVTEFCYK 373 Query 319 TLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPAC----- 373 T + CD CG + Q G +V + CG G++P N + CP C Sbjct 374 TKL-CD-CGFIT-QFG-YVDCCGDTCGFR----------GWVPGNMMDGFPCPGCCKSYM 419 Query 374 ------HNSEVGPEHSL--AEYHNESGLKTILRKGGRTIAFGGCVF--SYVGCHNKCAYW 423 +S V PE + + + ++ G + FGG + Y G W Sbjct 420 PWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPG------MW 473 Query 424 VPRASANIGC----NHTGVVG-EGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILA 478 +P +++ +TGVVG + D + L + V + G+ E+ AI+ Sbjct 474 LPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRFLYMDYVQ-HKCGNL---EQRAIL-- 527 Query 479 SFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFAS 538 GLD +Q++ + G++ + +L + F Sbjct 528 --------------GLDDVYHRQLLVNRGDYSL-----------------LLENVDLFVK 556 Query 539 EAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDA-MMFTSDLATNNLVV 597 R+ F+ T + + L +LDG+ S LI + FTS + + V Sbjct 557 R-----RAEFACKFATCGDGLVPL------LLDGLVPRSYYLIKSGQAFTSLMVNFSREV 605 Query 598 ------MAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRD------G 645 MA + V++ ++++ + G V + K + + K E + D G Sbjct 606 VDMCMDMALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVRKITEWFDLAVDTAASAAG 665 Query 646 WEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNL 705 W + ++ V ++T +E+ E V+ F F + DS+ + ++ Sbjct 666 WLCYQLVN--GLFAVANGVITFIQEVPELVKNFVDKFKTFFKVLIDSMSV------SILS 717 Query 706 GETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVL---TEEVVLKTGD 762 G T V + R C+ A ++ + ++LP ++ E G+ Sbjct 718 GLTVVKTASN--RVCL-------------AGSKVYEVVQKSLPAYIMPVGCSEATCLVGE 762 Query 763 LQP--LEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEK-YCALAPN----MMVTNNTFTL 815 ++P E + V+APL C +I +K Y A + ++V N+T + Sbjct 763 IEPAVFEDDVVDVVKAPLTYQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGV 822 Query 816 KGG------APTKVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEV 868 A KV F D V EV + + I F LD D VL++ CS + V+ + Sbjct 823 LDQCWRFPCAGKKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTL 882 Query 869 NEFACVVADAVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFY 925 +E VV DAV TL P E + T + L+ YLFDE GE +AS MYCSF Sbjct 883 DELLDVVLDAVESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFS 942 Query 926 PPDED 930 PDED Sbjct 943 APDED 947 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/153 (34%), Positives = 82/153 (54%), Gaps = 2/153 (1%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA A E+ D + Sbjct 1319 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKA 1378 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNV--NKGEDIQLLKSAYENFNQHEVLLAPLLSA 1151 G +VGG +G L K L++VGP+ + E LL+ AY++ N+ + ++ L+SA Sbjct 1379 QGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISA 1438 Query 1152 GIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 GIF SL + V NV L +++ +D Sbjct 1439 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFD 1471 Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 86/217 (40%), Gaps = 33/217 (15%) Query 1596 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLR-VEAFEYYHTTDPSFLGRYMSALNHTK 1654 P ++ D+ K++ E +T P D T V AF+ ++ S S H K Sbjct 1047 PDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFK 1106 Query 1655 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 1714 V G S NC+L + L+ +Q + L+F +Q + +AG F + Sbjct 1107 ------VCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKL 1160 Query 1715 LAYCNKTV-----GELGDVRETMSYLFQHANLDSC--KRVLNVVCKTCGQQQTTLKGVEA 1767 + K++ G + D +Y F L C K N C CG + L+G++A Sbjct 1161 VKSAPKSIILPQGGYVAD----FAYFF----LSQCSFKVHANWRCLKCG-MELKLQGLDA 1211 Query 1768 VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 1804 V + G + V C CG T L+ + P+ Sbjct 1212 VFFYGDV--------VSHMCKCGNSMT--LLSADIPY 1238 >sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 1833 bits (4748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 955/2182 (44%), Positives = 1372/2182 (63%), Gaps = 55/2182 (3%) Query 2255 SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISS 2313 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+S Sbjct 2274 SYLGIRTLCDGLAVEYRN-TSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITS 2332 Query 2314 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINL 2371 + ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + L Sbjct 2333 YVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFL 2392 Query 2372 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 2431 V P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G + Sbjct 2393 VTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTK 2452 Query 2432 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2491 R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y V Sbjct 2453 RTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYV 2512 Query 2492 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKS 2547 DSV VK+ + L++++ G YER+ L +F NL+ L+ T +P N +++D Sbjct 2513 DSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTND 2572 Query 2548 KCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 2607 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V + Sbjct 2573 RGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRD 2632 Query 2608 KLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVT 2666 KL+ L+ TA + + VL TF AAR V+SDVET VV+ L+ +H++DI++T Sbjct 2633 KLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLT 2692 Query 2667 GDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 2726 + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ + Sbjct 2693 TECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFK 2752 Query 2727 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVN---NWLKQLIKVTL----- 2778 +QIR A +K N+PF+LT + R N+++ K + KIV +WL ++ +T+ Sbjct 2753 RQIRIACRKCNIPFRLTTSKLRAADNILSVKFS--ATKIVGGAPSWLLRVRDLTVKGYCI 2810 Query 2779 --VFLF-VAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFD 2835 +F+F VA + + P + ++ I+ YK I+ G+ RDIA D CFANK+ F Sbjct 2811 LTLFVFTVAVLSWFCLPSYSIATVNFNDDRILTYKVIENGIVRDIAPNDACFANKYGHFS 2870 Query 2836 TWFSQ-RGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGN 2894 WF++ GG Y N CP+ AVI G V +P T L + F+ RVF A N Sbjct 2871 KWFNENHGGVYRNSVDCPITIAVIAGVAGARVANVPAT-LAWVGRQIVLFVSRVF-ANTN 2928 Query 2895 ICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRY 2954 +C+TP+ I Y F+ S CVL++ECT+F+DA G P+CYD VL G+ +Y ++P RY Sbjct 2929 VCFTPTNEIPYDTFSDSGCVLSSECTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRY 2988 Query 2955 VLMDGSI-IQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRS 3013 + D + I+FP E ++R+ T ++YCR G+CE S AGVC+ST+G W L N Y + Sbjct 2989 DMYDSDMYIKFPEVIFESTLRITKTLATQYCRFGSCEESAAGVCISTNGSWALYNQNYST 3048 Query 3014 LPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGE 3073 PG++CG D +++ + L QP+ +S S+ G ++ + +T YY + +RA + Sbjct 3049 RPGIYCGDDYFDIVRRLAVSLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALAD 3108 Query 3074 YSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFT 3133 Y+ + L++ LC L Y+ +Y Y TFYLT + +F+ HI W VMF Sbjct 3109 YTQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFG 3168 Query 3134 PLVPFWITIAYIICISTKHFYWFFSNYLKRRV-VF-NGVSFSTFEEAALCTFLLNKEMYL 3191 +VP W+ +Y + + +H +W + + K+ V VF +G +F++AA F++ K+ Y+ Sbjct 3169 TVVPIWMLASYTVGVMLRHLFWVLAYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYV 3228 Query 3192 KLRSDVLLPLTQ--YNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVL 3249 LR+ +TQ + RYL+L+NKYKY+SGAMDT SYREA HL KAL +S +GSD+L Sbjct 3229 ALRN----AITQDSFVRYLSLFNKYKYYSGAMDTASYREACAAHLCKALQTYSETGSDIL 3284 Query 3250 YQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTS 3309 YQPP S+TS+VLQSG KM+ PSG VE C+VQVTCG+ TLNGLWLD+ V+CPRH++C + Sbjct 3285 YQPPNCSVTSSVLQSGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPA 3344 Query 3310 EDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKF 3366 + + +PNY+ LLI K+NH+F+VQ LRV+ HSM +LKL VD ANP TP Y F Sbjct 3345 DQLTDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTF 3404 Query 3367 VRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMH 3426 ++PG +FSVLACYNG P+GV+ +R N TIKGSFL GSCGSVG+ + ++F YMH Sbjct 3405 STVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVLNFVYMH 3464 Query 3427 HMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRF 3486 MEL G H G+ +G YG F D+QT Q TD T+NV+AWLYAAV+NG +WF+ Sbjct 3465 QMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPT 3524 Query 3487 TTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTIL 3545 + +N A+ + E + +D+L + +TG++V M A+++ L G G+TIL Sbjct 3525 RVGIVTYNEWALSNQFTEFVGTQSIDML---AHRTGVSVEQMLAAIQSL-HAGFQGKTIL 3580 Query 3546 GSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFF 3605 G + LEDEFTP DV Q GV QS VKR G HWL+ T++ + + ++Q T+++++ + Sbjct 3581 GQSTLEDEFTPDDVNMQVMGVVMQSGVKRISYGFMHWLMSTLVLAYVSVMQLTKFTMWTY 3640 Query 3606 LYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVM 3661 L+E + A M VKHKH FL LFLLP + Y N+VY P +S ++ Sbjct 3641 LFETIPTQMTPLLFGFMACVMFTVKHKHTFLSLFLLPVALCLTYANIVYEPQTLVSSTLI 3700 Query 3662 RIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKV 3721 + WL + L D +Y S +L ++ R + L + + Y Sbjct 3701 AVANWLTPTSVYMRTTHL-DFGLYISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTY 3759 Query 3722 YYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIML 3781 G+ I+ I ++TS+Y+ V + LA+ I + Y P ++ ++L Sbjct 3760 VIGDH-SSPITYLMFITTLTSDYTITVFATVNLAKFISGLVFLYAPHLGFILPEVKLVLL 3818 Query 3782 VYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLN 3841 +Y LGY CT YFG+F LLN R+ LGVYDY VSTQEFR++ GL P+NS +A LN Sbjct 3819 IYLCLGYMCTMYFGVFSLLNLKLRVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILN 3878 Query 3842 IKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLA 3901 KLLG+GG PCIKVATVQSK++D+KCTSVVLL+VLQQL +ES+SK W+ CV+LHN+IL A Sbjct 3879 FKLLGIGGTPCIKVATVQSKLTDLKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAA 3938 Query 3902 KDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQ 3961 D TEAFE+ V L + L+S VD++ L ++ +N + LQA +EFS L +YA TAQ Sbjct 3939 VDPTEAFERFVCLFATLMSFSANVDLDALANDLFENSSVLQATLTEFSHLATYAELETAQ 3998 Query 3962 EAYEQAVANGD-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED 4020 +Y++A+ +GD S VLK L+K++NVAK+ +++D A+ RKLE+MA+QAMT MYKQAR+ED Sbjct 3999 SSYQKALNSGDASPQVLKALQKAVNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAED 4058 Query 4021 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY 4080 K+AK+ SAMQTMLF M++KLDND LN +I NAR+GCVPL+I+PL + KL VVIPD + + Sbjct 4059 KKAKIVSAMQTMLFGMIKKLDNDVLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVW 4118 Query 4081 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRA-NSAVKL 4139 + + +YA +LW++ + + D+++V+ +++ ++ + +L WPL++ RA +SAVKL Sbjct 4119 NKVVNWPSVSYAGSLWDVTVINNVDNEVVKPTDV-VETNESLTWPLVIECSRASSSAVKL 4177 Query 4140 QNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKS 4199 QNNE+ P L+ M AG Q C+ +A+AYY +G R V+ LLS+ LKWA+ Sbjct 4178 QNNEIHPKGLKTMVVTAGIDQVNCS-SSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGK 4236 Query 4200 DGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATE 4259 D G I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQAG TE Sbjct 4237 D--GFINIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTE 4294 Query 4260 VPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQE 4319 +NSTVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PEA DQE Sbjct 4295 FASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQE 4354 Query 4320 SFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGY 4379 ++GGAS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC W GY Sbjct 4355 TYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGY 4413 Query 4380 GCSCDQLREPMLQSADAQSFLN 4401 GC+CD LR + + +FLN Sbjct 4414 GCNCDALRNNTVPQSKDTNFLN 4435 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 225/771 (29%), Positives = 367/771 (48%), Gaps = 46/771 (6%) Query 1391 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 1450 +C E A V ++ K + VD G +Y Y+++ + +I N + MP Sbjct 1352 ICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGC-PGICAMPF 1409 Query 1451 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 1510 GYVTHGL+L ++ Y+R +KVP ++S + + N + + +TPE FI ++ G Sbjct 1410 GYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGG 1467 Query 1511 YKDWSY-SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVITFDNL---KTLLSLR 1563 Y W SG + + L +++ Y N + + F +L + L+ R Sbjct 1468 YHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSR 1527 Query 1564 EVR--TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVL 1621 + I+V T+D +N T +++ + T+ +Q G T+ G D++ P G++ +V Sbjct 1528 AAQQVNIEVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFVA 1587 Query 1622 PN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 N ++ V EYY T+D +FL RY S ++WK+ +G+ S+K ++ NCY+ + Sbjct 1588 DNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATI 1647 Query 1681 LTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 1739 + + + ++KF PALQ+AY R + G+ +F ALI+AY + T D + + L A Sbjct 1648 MMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKA 1707 Query 1740 NLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLV 1798 L S K V C CG + G+ A +Y G S E+ + C CG + LV Sbjct 1708 ELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLV 1767 Query 1799 QQESPFVMMSAPPAQYELKHGTFTCASEYTGNY------QCGHYKHITSKETL-YCIDGA 1851 + +P++++S E+K T T N GHY H+ K+ L Y D Sbjct 1768 EHSTPWLLVSG---LNEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSG 1824 Query 1852 LLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQP 1911 LTK+S+ K +T V+Y + YT V Y LDGV E++P L NYY KD Y+T +P Sbjct 1825 SLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKP 1884 Query 1912 -IDLVPNQPYPNASFDNFKFV-CDNIKFADDL----NQLTGYK--KPASRELKVTFFPDL 1963 I P P + + N V D +D + N L G+ KP S++L + P+ Sbjct 1885 TIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNE 1944 Query 1964 NGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSN 2023 +GDV+ ++ +Y P +KKG L KPI+W N + A KPN +R L+ P+ N Sbjct 1945 DGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDN 2004 Query 2024 SFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTE---VVGDIILKPA 2080 + VL+ +Q + E PV E+V + ++E K V G+ Sbjct 2005 KYTVLQDNTSQLI-----EPNVPVVEDV---SITTRKLIEVKCKGLNKPFVKGNFSFVND 2056 Query 2081 NNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAV 2130 N + + + +G T+L A YVD N+ + + N S + L T+ + L V Sbjct 2057 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIV 2107 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 228/972 (23%), Positives = 407/972 (42%), Gaps = 88/972 (9%) Query 8 FNEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEVLSEARQHLKD-GTCGLVEVE-KGV 60 +NEK HV ++P+ D+ L F D E ++ LK+ G V + + Sbjct 21 YNEKRSDHVACTVPLCDTEDMASKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRA 79 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETL-----GVLVPHVGEIP 115 + L P V++ H +V +A + + TL G+ P+ + Sbjct 80 MKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLNVKPLGMFFPYDSSLE 139 Query 116 VAYRKVLLRKNGNKGAGGHSYGADLKS---FDLGDELGTDPYEDFQENWNTKHSSGVTRE 172 LLRKNG G D K ++ D+L DP + +N Sbjct 140 TGEHTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------ 187 Query 173 LMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSE-QLDF---IDTKRGV 228 L+++L GG VD CG +G P+ ++A+ G TL++ ++D +D+ R + Sbjct 188 LLKKLIGGDCIP-VDQYMCGKNGKPIADYAKIVAKEGLT--TLADIEVDVKSRMDSDRFI 244 Query 229 YCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQP-- 286 + + + W R Y QT F + + D P F + S I + P Sbjct 245 -VLNKKLYRVVWNVTRRNVPYSKQTAFTVVSVIQCDD-KESVPEHTFTIGSQILMVSPLK 302 Query 287 RVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGT 346 K + + + Y + + + S + C+ CG +W TG+ ++ CG Sbjct 303 ATNNKNFNLKQRLLHTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGA 362 Query 347 ENLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--T 403 + + G +P+NA+ CP +N H+ A+ ++ K + GG+ T Sbjct 363 NYSANDVDLQSSGLVPKNALFLANCPCANNGAC--SHNAAQVYSILDGKACVEVGGKSFT 420 Query 404 IAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKV 459 + FGG V++Y+GC + Y+VPRA + + + G G D ++E L+K + Sbjct 421 LTFGGVVYAYMGCCDGTMYFVPRAKSCVS-RIGDAIFTGCTGTWDKVVETANLFLEKAQH 479 Query 460 NINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAK 517 ++N F L E ++LA S +TS F E +++++ + N F VT G Sbjct 480 SLNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYI 536 Query 518 KGAWNIGE----QKSILSPLYAFA--SEAARVVRSIFSRTLETAQNSVRVLQKAAITILD 571 + A NIG +I +P AF E+ + V +I + N L I+ Sbjct 537 RDAINIGANGVCNATINAPFIAFTGLGESFKKVAAI---PWKICSNLKSALDYYCSNIMF 593 Query 572 GISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYE----KLKPV 627 + Y + D F L + +A + V++ + + GTV L Sbjct 594 RVFPYDIP-CDVNDFVELLLDCGKLTVA-TSYFVLRYLDEKFDTVLGTVSNACQTALSSF 651 Query 628 LDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLA 687 L+ + F+ D +++ K + V A+ + VQ +++K + Sbjct 652 LNACVAASRATAGFISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMK 711 Query 688 LCADSIIIGGAKLKALNL-GETFVTHSKGLYRKCVKSREET-----GLLMPLKAPKEIIF 741 L ++ G KL A+ G + + G Y C+ ++ +T L++P K+ + Sbjct 712 LLHTNVSWAGTKLSAIIYEGREALLFNSGTYF-CLSTKAKTLQDQMNLVLPGDYNKKTLG 770 Query 742 L-----EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDT 796 + +T+ + V + G L +PT+E + +VG V ++ + + D Sbjct 771 ILDPVPNADTIDVTANSTVVDVVHGQL----EPTNEHGPSMIVGNYVLVSDKLFVRTDDE 826 Query 797 EKYCALAPNMMVTNNTFTLKGGAPT-KVTFGDDTVIEVQGYKSVNITFELDERIDKVL-N 854 E Y L N V + F LKGG P+ KVTFGD +EV Y+SV+IT+++ +D +L + Sbjct 827 EFY-PLCINGKVVSTLFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSS 885 Query 855 EKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEF 914 K + +TVE V +F V+ D V+ L P+ G D++++ Y++++ G+ Sbjct 886 SKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDC 945 Query 915 KLASHMYCSFYP 926 +S+M S P Sbjct 946 AWSSNMTFSINP 957 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 107/176 (61%), Gaps = 8/176 (5%) Query 991 QDGSEDNQT-------TTIQTIVE-VQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKN 1042 QD + +NQ T +T VE VQP+ ++ + ++ S + + ++V + Sbjct 1117 QDEASENQVHQVPDLQCTSETKVEIVQPRQDLRPRRLRKSKVDLSKYKHTVINNSVTLVL 1176 Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 1102 D ++ A + V+VNAAN +LKHGGG+AGA+NKA+ +Q ESD+YI+ +GPL VG S Sbjct 1177 GDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISNSGPLHVGDS 1236 Query 1103 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADP 1158 +L G+ LA L VVGP+ ED LLK Y+ FN+H +++ PL+S+GIF DP Sbjct 1237 VLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGIFSVDP 1292 >sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus HKU4 OX=694007 GN=1a PE=1 SV=1 Length=4434 Score = 1833 bits (4747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 960/2213 (43%), Positives = 1382/2213 (62%), Gaps = 61/2213 (3%) Query 2230 IIWFLLLSVCLGSLIYSTAALGVLM------SNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 I +L + L S + A G+L S LG+ + C G Y N T+ + +C+ Sbjct 2236 IYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRN-TSFDVMEFCS 2294 Query 2284 G-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLG 2342 S+ C CL G DSL Y +L+ +Q I+S+ ++ E+FLAY+L+T F VL Sbjct 2295 NRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLL 2354 Query 2343 LAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 L Q FF+Y + V++ + ++++ + LV P+ +VR+Y F A +++ K Y HV Sbjct 2355 LVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHV 2414 Query 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 ++GC + C++CYKRNR TRVE +TIV G +R+FY+ ANGG +C HNWNCV CDT Sbjct 2415 INGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGV 2474 Query 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER+ L + Sbjct 2475 GNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCY 2534 Query 2521 FVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 2576 F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL+D L Sbjct 2535 FTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNL 2594 Query 2577 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 2636 V+ VGDS E+A+KM D+++N+F S F+V +KL+ L+ TA + + NVL TF A Sbjct 2595 VTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDA 2654 Query 2637 AR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCS 2695 AR V+SDVET VV+ L+ +H++DI++T + NNY+ Y K +++ DLG ID Sbjct 2655 ARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLK 2714 Query 2696 ARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVT 2755 A +N ++ N A +WN D+M LS+ ++QIR A +K N+PF+LT + R N+++ Sbjct 2715 AASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILS 2774 Query 2756 TKIALKGGKIVN---NWLKQLIKVTL-------VFLF-VAAIFYLITPVHVMSKHTDFSS 2804 K + KIV +WL ++ +T+ +F+F VA + + P + ++ Sbjct 2775 VKFS--ATKIVGGAPSWLLRVRDLTVKGYCILTLFVFTVAVLSWFCLPSYSIATVNFNDD 2832 Query 2805 EIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQ-RGGSYTNDKACPLIAAVITREVG 2863 I+ YK I+ G+ RDIA D CFANK+ F WF++ GG Y N CP+ AVI G Sbjct 2833 RILTYKVIENGIVRDIAPNDVCFANKYGHFSKWFNENHGGVYRNSMDCPITIAVIAGVAG 2892 Query 2864 FVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFK 2923 V +P L + F+ RVF A N+C+TP I Y F+ S CVL++ECT+F+ Sbjct 2893 ARVANVPAN-LAWVGKQIVLFVSRVF-ANTNVCFTPINEIPYDTFSDSGCVLSSECTLFR 2950 Query 2924 DASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSI-IQFPNTYLEGSVRVVTTFDSE 2982 DA G P+CYD VL G+ +Y ++P RY + D + I+FP +E ++R+ T ++ Sbjct 2951 DAEGNLNPFCYDPTVLPGASSYADMKPHVRYDMYDSDMYIKFPEVIVESTLRITKTLATQ 3010 Query 2983 YCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALD 3042 YCR G+CE S AGVC+ST+G W L N Y + PG++CG D +++ + L QP+ Sbjct 3011 YCRFGSCEESAAGVCISTNGSWALYNQNYSTRPGIYCGDDYFDIVRRLAISLFQPVTYFQ 3070 Query 3043 ISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLP 3102 +S S+ G ++ + +T YY + +RA +Y+ + L++ LC L Sbjct 3071 LSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVANPLLV 3130 Query 3103 GVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLK 3162 Y+ +Y Y TFYLT + +F+ HI W VMF +VP W+ +Y + + +H +W + + K Sbjct 3131 APYTAMYYYATFYLTGEPAFIMHISWYVMFGAVVPIWMLASYTVGVMLRHLFWVLAYFSK 3190 Query 3163 RRV-VF-NGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQ--YNRYLALYNKYKYFS 3218 + V VF +G +F++AA F++ K+ Y+ LR+ +TQ + RYL+L+NKYKY+S Sbjct 3191 KHVDVFTDGKLNCSFQDAASNIFVIGKDTYVALRN----AITQDSFVRYLSLFNKYKYYS 3246 Query 3219 GAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEG 3278 GAMDT SYREA HL KAL +S +GSD+LYQPP S+TS+VLQSG KM+ PSG VE Sbjct 3247 GAMDTASYREACAAHLCKALQTYSETGSDILYQPPNCSVTSSVLQSGLVKMSAPSGAVEN 3306 Query 3279 CMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGN 3335 C+VQVTCG+ TLNGLWLD+ V+CPRH++C ++ + +PNY+ LLI K+NH+F+VQ Sbjct 3307 CIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHIGAQ 3366 Query 3336 VQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRP 3395 LRV+ HSM +LKL VD ANP TP Y F ++PG +FSVLACYNG P+GV+ +R Sbjct 3367 ANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLACYNGKPTGVFTVNLRH 3426 Query 3396 NFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQ 3455 N TIKGSFL GSCGSVG+ + ++F YMH MEL G H G+ +G YG F D+QT Q Sbjct 3427 NSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQ 3486 Query 3456 AAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILG 3514 TD T+NV+AWLYAAV+NG +WF+ + +N A+ + E + +D+L Sbjct 3487 LQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSIDML- 3545 Query 3515 PLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKR 3574 + +TG++V M A+++ L G G+TILG + LEDEFTP DV Q GV QS VKR Sbjct 3546 --AHRTGVSVEQMLAAIQSL-HAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSGVKR 3602 Query 3575 TIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHA 3634 G HWL+ T + + + ++Q T+++++ +L+E ++ A M VKHKH Sbjct 3603 ISYGFIHWLISTFVLAYVSVMQLTKFTMWTYLFETIPTQMTPLLLGFMACVMFTVKHKHT 3662 Query 3635 FLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVV 3690 F+ LFLLP + Y N+VY P +S ++ + WL + D +Y S Sbjct 3663 FMSLFLLPVALCLTYANIVYEPQTLISSTLIAVANWLTPTSVYMRTTHF-DFGLYISLSF 3721 Query 3691 LLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTT 3750 +L ++ R + L + + Y G+ I+ I ++TS+Y+ V Sbjct 3722 VLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGDH-SSPITYLMFITTLTSDYTITVFA 3780 Query 3751 VMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGV 3810 + LA+ I + Y P ++ ++L+Y LGY CT YFG+F LLN R+ LGV Sbjct 3781 TVNLAKFISGLVFFYAPHLGFILPEVKLVLLIYLGLGYMCTMYFGVFSLLNLKLRVPLGV 3840 Query 3811 YDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSV 3870 YDY VSTQEFR++ GL P+NS +A LN KLLG+GG PCIKVATVQSK++D+KCTSV Sbjct 3841 YDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLLGIGGTPCIKVATVQSKLTDLKCTSV 3900 Query 3871 VLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKL 3930 VLL+VLQQL +ES+SK W+ CV+LHN+IL A D TEAFE+ V L + L+S VD++ L Sbjct 3901 VLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPTEAFERFVCLFATLMSFSANVDLDAL 3960 Query 3931 CEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLKKSLNVAKS 3989 ++ +N + LQA +EFS L +YA TAQ +Y++A+ +GD S VLK L+K++NVAK+ Sbjct 3961 ANDLFENSSVLQATLTEFSHLATYAELETAQSSYQKALNSGDASPQVLKALQKAVNVAKN 4020 Query 3990 EFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNII 4049 +++D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDND LN +I Sbjct 4021 AYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGVI 4080 Query 4050 NNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIV 4109 NAR+GCVPL+I+PL + KL VVIPD + + + + +YA +LW+I + + D+++V Sbjct 4081 ANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVVNWPSVSYAGSLWDITVINNVDNEVV 4140 Query 4110 QLSEISMDNSPNLAWPLIVTALR-ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNA 4168 + +++ ++ + +L WPL++ R ++SAVKLQNNE+ P L+ M AG Q C + +A Sbjct 4141 KPTDV-VETNESLTWPLVIECSRSSSSAVKLQNNEIHPKGLKTMVITAGVDQVNC-NSSA 4198 Query 4169 LAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYL 4228 +AYY +G R V+ LLS+ LKWA+ D G I EL+PPC+F+ PKGP+++YL Sbjct 4199 VAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD--GFINIELQPPCKFLIAGPKGPEIRYL 4256 Query 4229 YFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGG 4288 YF+K LNNL+RG +LG +AATVRLQAG TE +NSTVL+ AFAVD AKAY DY+ SGG Sbjct 4257 YFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGG 4316 Query 4289 QPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGK 4348 P++N VKML TGTG AI+V PEA DQE++GGAS CLYCR HI+HP+ G C K + Sbjct 4317 TPLSNYVKMLAPKTGTGVAISVKPEATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTR 4376 Query 4349 YVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 +VQIP DPVGF LKN C VC W GYGC+CD LR + + +FLN Sbjct 4377 FVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGCNCDALRNNTVPQSKDTNFLN 4428 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 226/771 (29%), Positives = 368/771 (48%), Gaps = 46/771 (6%) Query 1391 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 1450 +C E A V ++ K + VD G +Y Y+++ + +I N + + MP Sbjct 1345 ICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCS-GICAMPF 1402 Query 1451 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 1510 GYVTHGL+L ++ Y+R +KVP ++S + + N + + +TPE FI ++ G Sbjct 1403 GYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGG 1460 Query 1511 YKDWSY-SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVITFDNL---KTLLSLR 1563 Y W SG + + L +++ Y N + + F +L + L+ R Sbjct 1461 YHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSR 1520 Query 1564 EVR--TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVL 1621 + I+V T+D +N T +++ + T+ +Q G T+ G D++ P G++ +V Sbjct 1521 AAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFVA 1580 Query 1622 PN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 N ++ +V EYY T+D +FL RY S ++WK+ +G+ S+K ++ NCY+ + Sbjct 1581 DNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATI 1640 Query 1681 LTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 1739 + + + ++KF PALQ+AY R + G+ +F ALI+AY + T D + + L A Sbjct 1641 MMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKA 1700 Query 1740 NLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLV 1798 L S K V C CG + G+ A +Y G S E+ + C CG + LV Sbjct 1701 ELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLV 1760 Query 1799 QQESPFVMMSAPPAQYELKHGTFTCASEYTGNY------QCGHYKHITSKETL-YCIDGA 1851 + +P++++S E+K T T N GHY HI K+ L Y D Sbjct 1761 EHSAPWLLVSG---LNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSG 1817 Query 1852 LLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQP 1911 LTK+S+ K +T V+Y YT V Y LDGV E++P L NYY KD Y+T +P Sbjct 1818 SLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKP 1877 Query 1912 -IDLVPNQPYPNASFDNFKFV-CDNIKFADDL----NQLTGYK--KPASRELKVTFFPDL 1963 I P P + + N V D +D + N L G+ KP S++L + P+ Sbjct 1878 TIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNE 1937 Query 1964 NGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSN 2023 +GDV+ ++ +Y P +KKG L KPI+W N + A KPN +R L+ P+ N Sbjct 1938 DGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDN 1997 Query 2024 SFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTE---VVGDIILKPA 2080 + VL+ +Q E PV ++V P + ++E K V G+ Sbjct 1998 KYTVLQDNTSQ-----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVND 2049 Query 2081 NNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAV 2130 N + + + +G T+L A YVD N+ + + N S + L T+ + L V Sbjct 2050 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIV 2100 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 316/1307 (24%), Positives = 534/1307 (41%), Gaps = 198/1307 (15%) Query 8 FNEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEVLSEARQHLKD-GTCGLVEVE-KGV 60 +NEK HV ++P+ D+ L F D E ++ LK+ G V + + Sbjct 21 YNEKRSDHVACTVPLCDTDDMACKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRA 79 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGR-----SGETLGVLVPHVGEIP 115 + L P V++ H +V +A + + + + LG+ P+ + Sbjct 80 MKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDQVGAAMMRTTLNAKPLGMFFPYDSSLE 139 Query 116 VAYRKVLLRKNGNKGAGGHSYGADLKS---FDLGDELGTDPYEDFQENWNTKHSSGVTRE 172 LLRKNG G D K ++ D+L DP + +N Sbjct 140 TGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------ 187 Query 173 LMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSE-QLDF---IDTKRGV 228 L+++L GG +D CG +G P+ ++A+ G TL++ ++D +D+ R + Sbjct 188 LLKKLIGGDCIP-IDQYMCGKNGKPIADYAKIVAKEGLT--TLADIEVDVKSRMDSDRFI 244 Query 229 YCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRV 288 + + + W R Y QT F I + D P F + S I + P + Sbjct 245 -VLNKKLYRVVWNVTRRNVPYPKQTAFTIVSVVQCDD-KDSVPEHTFTIGSQILMVSP-L 301 Query 289 EKKKLDGFMGRIRSVYPVASPNECNQ---MCLSTLMKCDHCGETSWQTGDFVKATCEFCG 345 + F + R +Y + Q + S + C+ CG +W TG+ ++ CG Sbjct 302 KATNNKNFNLKQRLLYTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCG 361 Query 346 TENLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR-- 402 + + G +P+NA+ CP +N HS A+ +N K + GG+ Sbjct 362 ANYSANDVDLQSSGLVPRNALFLANCPCANNGAC--SHSAAQVYNILDGKACVEVGGKSF 419 Query 403 TIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEK 458 T+ FGG V++Y+GC + Y+VPRA + + + G G D ++E L+K + Sbjct 420 TLTFGGVVYAYMGCCDGTMYFVPRAKSCVS-RIGDAIFTGCTGTWDKVVETANLFLEKAQ 478 Query 459 VNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKA 516 ++N F L E ++LA S +TS F E +++++ + N F VT G Sbjct 479 RSLNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDY 535 Query 517 KKGAWNIGEQ----KSILSPLYAFAS--EAARVVRSI---FSRTLETAQN---SVRVLQK 564 + A NIG +I +P AF E+ + V +I L++A + S + + Sbjct 536 IRDAINIGANGVCNATINAPFIAFTGLGESFKKVSAIPWKICSNLKSALDYYSSNIMFRV 595 Query 565 AAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEK- 623 I +S + L+D T V +Y V++ + + GTV Sbjct 596 FPYDIPCDVSNFVELLLDCGKLT--------VATSYF---VLRYLDEKFDTVLGTVSSAC 644 Query 624 ---LKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFK 680 L L+ + F+ D +++ K + V A+ + VQ Sbjct 645 QTALSSFLNACVAASRATAGFINDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLD 704 Query 681 LVNKFLALCADSIIIGGAKLKALNL-GETFVTHSKGLYRKCVKSREET-----GLLMPLK 734 +++K + L ++ G KL A+ G + + G Y C+ ++ +T L++P Sbjct 705 IMSKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYF-CLSTKAKTLQGQMNLVLPGD 763 Query 735 APKEIIFL-----EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLM 789 K+ + + +T+ + V + G L+P T+E + +VG V ++ + Sbjct 764 YNKKTLGILDPVPNADTIDVNANSTVVDVVHGQLEP----TNEHGPSMIVGNYVLVSDKL 819 Query 790 LLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSVNITFELDER 848 + +D E Y L N V + F LKGG P+K VTFGD +EV Y+SV+IT+++ Sbjct 820 FVRTEDEEFY-PLCTNGKVVSTLFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPV 878 Query 849 IDKVL-NEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYL 907 +D +L + K + +TVE V +F V+ D V+ L P+ G D++++ Y+ Sbjct 879 LDALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYV 938 Query 908 FDESGEFKLASHMYCSFYP--------------------PDEDEEEGDCEE-EEFEPSTQ 946 +++ G+ +S+M S P P D+EE EE P Sbjct 939 YNQDGDCAWSSNMTFSINPVEDVEEVEEFIEDDYLSDELPIADDEEAWARAVEEVMPLDD 998 Query 947 YEYGTEDDYQGKPLEFGATSA---ALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQ 1003 + + PLE S ++ E QE DS + G D + Sbjct 999 ILVAEIELEEDPPLETALESVEAEVVETAEAQEPSVESIDSTPSTSTVVGENDLSVKPMS 1058 Query 1004 TIVEVQPQLEME----------LTPVV----------QTIEVNSFSGYLKLTDNVYIKNA 1043 + E LE+E +T +V Q V+S + ++N + + Sbjct 1059 RVAETDDVLELETAVVGGPVSDVTAIVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVS 1118 Query 1044 D--------------IVEEAKKVKP---------------TVVVNAANVYLKHGGGVAGA 1074 D IV+ + +KP TV+ N+ + L +A Sbjct 1119 DLQGNELLCSETKVEIVQPRQDLKPRRSRKSKVDLSKYKHTVINNSVTLVLGDAIQIASL 1178 Query 1075 LNK-----------------------ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA 1111 L K A+ +Q ESD+YI+ NGPL VG S +L GH LA Sbjct 1179 LPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLA 1238 Query 1112 KHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADP 1158 LHVVGP+ ED LLK Y+ FN+H +++ PL+SAGIF DP Sbjct 1239 DAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFSVDP 1285 >sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1 Length=4441 Score = 1832 bits (4745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1062/2889 (37%), Positives = 1592/2889 (55%), Gaps = 118/2889 (4%) Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1680 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1738 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1739 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1798 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF+ Sbjct 1799 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPFL 1856 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ + G GHY H+ D + K + G +TD Sbjct 1857 ICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTD 1914 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--N 1922 Y +N + T T Y LD V +P L YY + Y+T +PI +P+ + Sbjct 1915 CLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKVD 1973 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I LN G+ E KVT +P GDVV Y + K Sbjct 1974 GVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2031 Query 1982 GAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNL 2039 G + KP++W H + N TY ++ ++ N + VL +D++ Sbjct 2032 GCETFGKPVIWLCHDEASLNSLTY----------FNKPSFKSENRYSVLS------VDSV 2075 Query 2040 ACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA 2098 + E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2076 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2135 Query 2099 YVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTN 2155 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2136 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPKI 2191 Query 2156 IVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCL--EA 2213 R + ++ + F + L FT + + N FCL + Sbjct 2192 FKARAIEFY--GFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNL------FCLALKN 2243 Query 2214 SFNYLKSPNFSKLINII-----IWF--LLLSVCLGSL---------IYSTAALGVLMSNL 2257 +F + F K ++ WF L ++V I+ + + + Sbjct 2244 AFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATF 2303 Query 2258 GMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS---F 2314 G+ + C Y + + T + +C GS C +C SG D LDTY +++ +Q + F Sbjct 2304 GLVTICDFYSKLGVGFT----SHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLF 2359 Query 2315 KWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLV 2372 + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2360 DY-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVA 2418 Query 2373 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 2432 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R Sbjct 2419 NMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIR 2478 Query 2433 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 2492 + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2479 YYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVT 2538 Query 2493 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2552 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2539 DIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRA 2596 Query 2553 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 2612 + +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + Sbjct 2597 NFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNF 2656 Query 2613 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 2671 V A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ N Sbjct 2657 VNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYN 2716 Query 2672 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 2731 N + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ Sbjct 2717 NLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKK 2776 Query 2732 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLIT 2791 A K L KLT V ++TT +LKGG +++N L L ++L+ + + + Sbjct 2777 ACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALL 2833 Query 2792 PVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGS--YTNDK 2849 P + + K +K ID GV RDI+ D CFANK FD W+ GS Y N Sbjct 2834 PTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSM 2893 Query 2850 ACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFA 2909 CP++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF Sbjct 2894 DCPIVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFY 2952 Query 2910 TSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTY 2968 S CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ Sbjct 2953 ASGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVI 3012 Query 2969 LEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLT 3028 EG VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 3013 SEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFY 3072 Query 3029 NMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMS 3088 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ ++ Sbjct 3073 QFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCIN 3132 Query 3089 FTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICI 3148 F +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ + Sbjct 3133 FLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMV 3192 Query 3149 STKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYL 3208 H W FS R++ N + STFEE +L TF++ K+ Y +L++ V YNRYL Sbjct 3193 IANHVLWLFS--YCRKIGVNVCNDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRYL 3248 Query 3209 ALYNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFR 3267 +LYNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG Sbjct 3249 SLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIV 3308 Query 3268 KMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNH 3327 KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC S +M P+Y LL R + Sbjct 3309 KMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLG 3368 Query 3328 NFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSG 3387 +F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G Sbjct 3369 DFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQG 3428 Query 3388 VYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGP 3447 + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP Sbjct 3429 AFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGP 3488 Query 3448 FVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQ 3507 + D Q Q D TVNV+AWLYAA++N WF+ ++ DFN+ AM + + Sbjct 3489 YRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKA 3548 Query 3508 DHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVT 3567 D V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Sbjct 3549 DLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVK 3605 Query 3568 FQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM 3627 QS KR IK T +W+L++ ++ +W++F ++ + + ++ +F M+ Sbjct 3606 LQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMML 3664 Query 3628 FVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYA 3686 VKHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3665 LVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYEVFYGC 3724 Query 3687 SAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSG 3746 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3725 ILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYTW 3782 Query 3747 VVTTVMFLARGIVFMCVEYCPIFFITG-NTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFR 3805 TT++ LA + IF+ T ++ I+L Y F+GY +CY+G F LLN FR Sbjct 3783 --TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFR 3840 Query 3806 LTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDV 3865 + +GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++DV Sbjct 3841 MPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDV 3900 Query 3866 KCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAV 3925 KC +VVLL+ LQ L V S+S+LW C LHN+IL D + AF+K+ LL VL + AV Sbjct 3901 KCANVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAV 3960 Query 3926 D------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLK 3978 D I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ +K Sbjct 3961 DTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIK 4020 Query 3979 KLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLR 4038 +L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+R Sbjct 4021 QLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVR 4080 Query 4039 KLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEI 4098 KLDN ALN+I++NA GCVPLN IP A L ++IPD + D YA ++W I Sbjct 4081 KLDNQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHI 4140 Query 4099 QQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCAA 4156 Q V DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ + Sbjct 4141 QTVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNS 4196 Query 4157 GTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFV 4216 G+ + YYN GR V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4197 GSDMNC--NIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVV-LELDPPCKFS 4253 Query 4217 TDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDA 4276 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD Sbjct 4254 IQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDP 4313 Query 4277 AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDH 4336 K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++H Sbjct 4314 KKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEH 4373 Query 4337 PNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADA 4396 P+ G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC +QS D Sbjct 4374 PDVDGLCKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SGVAVQSKDL 4431 Query 4397 QSFLNGFAV 4405 +FLNGF V Sbjct 4432 -NFLNGFGV 4439 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 1092 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 1149 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 1150 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 SAGIF SL + V V L +K +D Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1482 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 102/422 (24%), Positives = 172/422 (41%), Gaps = 63/422 (15%) Query 562 LQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW-------- 612 L ++ I +SQ+S + D + L + + V YI V +L +Q+ Sbjct 562 LIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLV 621 Query 613 --LTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKE 670 + N F T+ + P WL + G+ F+ + A I AK Sbjct 622 NKMVNWFNTMLDASAPATGWLLYQLLNGL-----------FVVSQANFNFVALIPDYAKI 670 Query 671 IKESVQTFFKLVNKFLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSRE 725 + TFFKL+ L ++ LK +N +G F S GL Sbjct 671 LVNKFYTFFKLL---LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI-------- 719 Query 726 ETGLLMPLKA-PKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTP 782 G ++P A ++I F EG + E V+++ ++ ++ S E + P Sbjct 720 -PGFVLPCNAQEQQIYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEK 771 Query 783 VCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG-----APTKVTFGDDTVI-EVQGY 836 +CI M + K +K+ P +M N L A KV F + V+ E+ Sbjct 772 ICIIDNMYMG-KCGDKF---FPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSL 827 Query 837 KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPL 893 +V + F+LD D +L + CS + VE G V++F VV DA+ L + + + Sbjct 828 MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQV 887 Query 894 GIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTE 952 L++ + YLFDE+G+ +AS MYC+F D ED + E+ + + + Sbjct 888 RAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDD 947 Query 953 DD 954 +D Sbjct 948 ED 949 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 1658 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 1717 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1115 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1174 Query 1718 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 1775 K + + G V + + ++++ N C CG L G++AV + G + Sbjct 1175 IPKAIVLPQGGYVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDAVFFYGDI- 1229 Query 1776 YEQFKKGVQIPCTCGKQATKYLVQQESP 1803 V C CG T L+ + P Sbjct 1230 -------VSHVCKCGHNMT--LIAADLP 1248 >sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 1831 bits (4743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 960/2213 (43%), Positives = 1382/2213 (62%), Gaps = 61/2213 (3%) Query 2230 IIWFLLLSVCLGSLIYSTAALGVLM------SNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 I +L + L S + A G+L S LG+ + C G Y N T+ + +C+ Sbjct 2236 IYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRN-TSFDVMEFCS 2294 Query 2284 G-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLG 2342 S+ C CL G DSL Y +L+ +Q I+S+ ++ E+FLAY+L+T F VL Sbjct 2295 NRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLL 2354 Query 2343 LAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 L Q FF+Y + V++ + ++++ + LV P+ +VR+Y F A +++ K Y HV Sbjct 2355 LVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHV 2414 Query 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 ++GC + C++CYKRNR TRVE +TIV G +R+FY+ ANGG +C HNWNCV CDT Sbjct 2415 INGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGV 2474 Query 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER+ L + Sbjct 2475 GNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCY 2534 Query 2521 FVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 2576 F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL+D L Sbjct 2535 FTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNL 2594 Query 2577 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 2636 V+ VGDS E+A+KM D+++N+F S F+V +KL+ L+ TA + + NVL TF A Sbjct 2595 VTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDA 2654 Query 2637 AR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCS 2695 AR V+SDVET VV+ L+ +H++DI++T + NNY+ Y K +++ DLG ID Sbjct 2655 ARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLK 2714 Query 2696 ARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVT 2755 A +N ++ N A +WN D+M LS+ ++QIR A +K N+PF+LT + R N+++ Sbjct 2715 AASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILS 2774 Query 2756 TKIALKGGKIVN---NWLKQLIKVTL-------VFLF-VAAIFYLITPVHVMSKHTDFSS 2804 K + KIV +WL ++ +T+ +F+F VA + + P + ++ Sbjct 2775 VKFS--ATKIVGGAPSWLLRVRDLTVKGYCILTLFVFTVAVLSWFCLPSYSIATVNFNDD 2832 Query 2805 EIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQ-RGGSYTNDKACPLIAAVITREVG 2863 I+ YK I+ G+ RDIA D CFANK+ F WF++ GG Y N CP+ AVI G Sbjct 2833 RILTYKVIENGIVRDIAPNDVCFANKYGHFSKWFNENHGGVYRNSMDCPITIAVIAGVAG 2892 Query 2864 FVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFK 2923 V +P L + F+ RVF A N+C+TP I Y F+ S CVL++ECT+F+ Sbjct 2893 ARVANVPAN-LAWVGKQIVLFVSRVF-ANTNVCFTPINEIPYDTFSDSGCVLSSECTLFR 2950 Query 2924 DASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSI-IQFPNTYLEGSVRVVTTFDSE 2982 DA G P+CYD VL G+ +Y ++P RY + D + I+FP +E ++R+ T ++ Sbjct 2951 DAEGNLNPFCYDPTVLPGASSYADMKPHVRYDMYDSDMYIKFPEVIVESTLRITKTLATQ 3010 Query 2983 YCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALD 3042 YCR G+CE S AGVC+ST+G W L N Y + PG++CG D +++ + L QP+ Sbjct 3011 YCRFGSCEESAAGVCISTNGSWALYNQNYSTRPGIYCGDDYFDIVRRLAISLFQPVTYFQ 3070 Query 3043 ISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLP 3102 +S S+ G ++ + +T YY + +RA +Y+ + L++ LC L Sbjct 3071 LSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVANPLLV 3130 Query 3103 GVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLK 3162 Y+ +Y Y TFYLT + +F+ HI W VMF +VP W+ +Y + + +H +W + + K Sbjct 3131 APYTAMYYYATFYLTGEPAFIMHISWYVMFGAVVPIWMLASYTVGVMLRHLFWVLAYFSK 3190 Query 3163 RRV-VF-NGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQ--YNRYLALYNKYKYFS 3218 + V VF +G +F++AA F++ K+ Y+ LR+ +TQ + RYL+L+NKYKY+S Sbjct 3191 KHVDVFTDGKLNCSFQDAASNIFVIGKDTYVALRN----AITQDSFVRYLSLFNKYKYYS 3246 Query 3219 GAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEG 3278 GAMDT SYREA HL KAL +S +GSD+LYQPP S+TS+VLQSG KM+ PSG VE Sbjct 3247 GAMDTASYREACAAHLCKALQTYSETGSDILYQPPNCSVTSSVLQSGLVKMSAPSGAVEN 3306 Query 3279 CMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGN 3335 C+VQVTCG+ TLNGLWLD+ V+CPRH++C ++ + +PNY+ LLI K+NH+F+VQ Sbjct 3307 CIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHIGAQ 3366 Query 3336 VQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRP 3395 LRV+ HSM +LKL VD ANP TP Y F ++PG +FSVLACYNG P+GV+ +R Sbjct 3367 ANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLACYNGKPTGVFTVNLRH 3426 Query 3396 NFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQ 3455 N TIKGSFL GSCGSVG+ + ++F YMH MEL G H G+ +G YG F D+QT Q Sbjct 3427 NSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQ 3486 Query 3456 AAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILG 3514 TD T+NV+AWLYAAV+NG +WF+ + +N A+ + E + +D+L Sbjct 3487 LQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSIDML- 3545 Query 3515 PLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKR 3574 + +TG++V M A+++ L G G+TILG + LEDEFTP DV Q GV QS VKR Sbjct 3546 --AHRTGVSVEQMLAAIQSL-HAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSGVKR 3602 Query 3575 TIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHA 3634 G HWL+ T + + + ++Q T+++++ +L+E ++ A M VKHKH Sbjct 3603 ISYGFIHWLISTFVLAYVSVMQLTKFTMWTYLFETIPTQMTPLLLGFMACVMFTVKHKHT 3662 Query 3635 FLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVV 3690 F+ LFLLP + Y N+VY P +S ++ + WL + D +Y S Sbjct 3663 FMSLFLLPVALCLTYANIVYEPQTLISSTLIAVANWLTPTSVYMRTTHF-DFGLYISLSF 3721 Query 3691 LLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTT 3750 +L ++ R + L + + Y G+ I+ I ++TS+Y+ V Sbjct 3722 VLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGDH-SSPITYLMFITTLTSDYTITVFA 3780 Query 3751 VMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGV 3810 + LA+ I + Y P ++ ++L+Y LGY CT YFG+F LLN R+ LGV Sbjct 3781 TVNLAKFISGLVFFYAPHLGFILPEVKLVLLIYLGLGYMCTMYFGVFSLLNLKLRVPLGV 3840 Query 3811 YDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSV 3870 YDY VSTQEFR++ GL P+NS +A LN KLLG+GG PCIKVATVQSK++D+KCTSV Sbjct 3841 YDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLLGIGGTPCIKVATVQSKLTDLKCTSV 3900 Query 3871 VLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKL 3930 VLL+VLQQL +ES+SK W+ CV+LHN+IL A D TEAFE+ V L + L+S VD++ L Sbjct 3901 VLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPTEAFERFVCLFATLMSFSANVDLDAL 3960 Query 3931 CEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLKKSLNVAKS 3989 ++ +N + LQA +EFS L +YA TAQ +Y++A+ +GD S VLK L+K++NVAK+ Sbjct 3961 ANDLFENSSVLQATLTEFSHLATYAELETAQSSYQKALNSGDASPQVLKALQKAVNVAKN 4020 Query 3990 EFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNII 4049 +++D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDND LN +I Sbjct 4021 AYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGVI 4080 Query 4050 NNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIV 4109 NAR+GCVPL+I+PL + KL VVIPD + + + + +YA +LW+I + + D+++V Sbjct 4081 ANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVVNWPSVSYAGSLWDITVINNVDNEVV 4140 Query 4110 QLSEISMDNSPNLAWPLIVTALR-ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNA 4168 + +++ ++ + +L WPL++ R ++SAVKLQNNE+ P L+ M AG Q C + +A Sbjct 4141 KPTDV-VETNESLTWPLVIECSRSSSSAVKLQNNEIHPKGLKTMVITAGVDQVNC-NSSA 4198 Query 4169 LAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYL 4228 +AYY +G R V+ LLS+ LKWA+ D G I EL+PPC+F+ PKGP+++YL Sbjct 4199 VAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD--GFINIELQPPCKFLIAGPKGPEIRYL 4256 Query 4229 YFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGG 4288 YF+K LNNL+RG +LG +AATVRLQAG TE +NSTVL+ AFAVD AKAY DY+ SGG Sbjct 4257 YFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGG 4316 Query 4289 QPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGK 4348 P++N VKML TGTG AI+V PEA DQE++GGAS CLYCR HI+HP+ G C K + Sbjct 4317 TPLSNYVKMLAPKTGTGVAISVKPEATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTR 4376 Query 4349 YVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 +VQIP DPVGF LKN C VC W GYGC+CD LR + + +FLN Sbjct 4377 FVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGCNCDALRNNTVPQSKDTNFLN 4428 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 226/771 (29%), Positives = 368/771 (48%), Gaps = 46/771 (6%) Query 1391 VCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPL 1450 +C E A V ++ K + VD G +Y Y+++ + +I N + + MP Sbjct 1345 ICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCS-GICAMPF 1402 Query 1451 GYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGS 1510 GYVTHGL+L ++ Y+R +KVP ++S + + N + + +TPE FI ++ G Sbjct 1403 GYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGG 1460 Query 1511 YKDWSY-SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVITFDNL---KTLLSLR 1563 Y W SG + + L +++ Y N + + F +L + L+ R Sbjct 1461 YHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSR 1520 Query 1564 EVR--TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVL 1621 + I+V T+D +N T +++ + T+ +Q G T+ G D++ P G++ +V Sbjct 1521 AAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFVA 1580 Query 1622 PN-DDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 N ++ +V EYY T+D +FL RY S ++WK+ +G+ S+K ++ NCY+ + Sbjct 1581 DNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATI 1640 Query 1681 LTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 1739 + + + ++KF PALQ+AY R + G+ +F ALI+AY + T D + + L A Sbjct 1641 MMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKA 1700 Query 1740 NLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLV 1798 L S K V C CG + G+ A +Y G S E+ + C CG + LV Sbjct 1701 ELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLV 1760 Query 1799 QQESPFVMMSAPPAQYELKHGTFTCASEYTGNY------QCGHYKHITSKETL-YCIDGA 1851 + +P++++S E+K T T N GHY HI K+ L Y D Sbjct 1761 EHSAPWLLVSG---LNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSG 1817 Query 1852 LLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQP 1911 LTK+S+ K +T V+Y YT V Y LDGV E++P L NYY KD Y+T +P Sbjct 1818 SLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKP 1877 Query 1912 -IDLVPNQPYPNASFDNFKFV-CDNIKFADDL----NQLTGYK--KPASRELKVTFFPDL 1963 I P P + + N V D +D + N L G+ KP S++L + P+ Sbjct 1878 TIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNE 1937 Query 1964 NGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSN 2023 +GDV+ ++ +Y P +KKG L KPI+W N + A KPN +R L+ P+ N Sbjct 1938 DGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDN 1997 Query 2024 SFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTE---VVGDIILKPA 2080 + VL+ +Q E PV ++V P + ++E K V G+ Sbjct 1998 KYTVLQDNTSQ-----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVND 2049 Query 2081 NNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLATHGLAAV 2130 N + + + +G T+L A YVD N+ + + N S + L T+ + L V Sbjct 2050 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIV 2100 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 314/1301 (24%), Positives = 531/1301 (41%), Gaps = 186/1301 (14%) Query 8 FNEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEVLSEARQHLKD-GTCGLVEVE-KGV 60 +NEK HV ++P+ D+ L F D E ++ LK+ G V + + Sbjct 21 YNEKRSDHVACTVPLCDTDDMACKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRA 79 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGR-----SGETLGVLVPHVGEIP 115 + L P V++ H +V +A + + + + LG+ P+ + Sbjct 80 MKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDQVGAAMMRTTLNAKPLGMFFPYDSSLE 139 Query 116 VAYRKVLLRKNGNKGAGGHSYGADLKS---FDLGDELGTDPYEDFQENWNTKHSSGVTRE 172 LLRKNG G D K ++ D+L DP + +N Sbjct 140 TGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------ 187 Query 173 LMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSE-QLDF---IDTKRGV 228 L+++L GG +D CG +G P+ ++A+ G TL++ ++D +D+ R + Sbjct 188 LLKKLIGGDCIP-IDQYMCGKNGKPIADYAKIVAKEGLT--TLADIEVDVKSRMDSDRFI 244 Query 229 YCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRV 288 + + + W R Y QT F I + D P F + S I + P + Sbjct 245 -VLNKKLYRVVWNVTRRNVPYPKQTAFTIVSVVQCDD-KDSVPEHTFTIGSQILMVSP-L 301 Query 289 EKKKLDGFMGRIRSVYPVASPNECNQ---MCLSTLMKCDHCGETSWQTGDFVKATCEFCG 345 + F + R +Y + Q + S + C+ CG +W TG+ ++ CG Sbjct 302 KATNNKNFNLKQRLLYTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCG 361 Query 346 TENLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR-- 402 + + G +P+NA+ CP +N HS A+ +N K + GG+ Sbjct 362 ANYSANDVDLQSSGLVPRNALFLANCPCANNGAC--SHSAAQVYNILDGKACVEVGGKSF 419 Query 403 TIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEK 458 T+ FGG V++Y+GC + Y+VPRA + + + G G D ++E L+K + Sbjct 420 TLTFGGVVYAYMGCCDGTMYFVPRAKSCVS-RIGDAIFTGCTGTWDKVVETANLFLEKAQ 478 Query 459 VNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKA 516 ++N F L E ++LA S +TS F E +++++ + N F VT G Sbjct 479 RSLNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDY 535 Query 517 KKGAWNIGEQ----KSILSPLYAFAS--EAARVVRSIFSRTLETAQNSVRVLQKAAITIL 570 + A NIG +I +P AF E+ + V +I + N L + I+ Sbjct 536 IRDAINIGANGVCNATINAPFIAFTGLGESFKKVSAI---PWKICSNLKSALDYYSSNIM 592 Query 571 DGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEK----LKP 626 + Y + D F L + +A + V++ + + GTV L Sbjct 593 FRVFPYDIP-CDVSNFVELLLDCGKLTVA-TSYFVLRYLDEKFDTVLGTVSSACQTALSS 650 Query 627 VLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFL 686 L+ + F+ D +++ K + V A+ + VQ +++K + Sbjct 651 FLNACVAASRATAGFINDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAM 710 Query 687 ALCADSIIIGGAKLKALNL-GETFVTHSKGLYRKCVKSREET-----GLLMPLKAPKEII 740 L ++ G KL A+ G + + G Y C+ ++ +T L++P K+ + Sbjct 711 KLLHTNVSWAGTKLSAIIYEGREALLFNSGTYF-CLSTKAKTLQGQMNLVLPGDYNKKTL 769 Query 741 FL-----EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKD 795 + +T+ + V + G L+P T+E + +VG V ++ + + +D Sbjct 770 GILDPVPNADTIDVNANSTVVDVVHGQLEP----TNEHGPSMIVGNYVLVSDKLFVRTED 825 Query 796 TEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVL- 853 E Y L N V + F LKGG P+K VTFGD +EV Y+SV+IT+++ +D +L Sbjct 826 EEFY-PLCTNGKVVSTLFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLS 884 Query 854 NEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGE 913 + K + +TVE V +F V+ D V+ L P+ G D++++ Y++++ G+ Sbjct 885 SSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGD 944 Query 914 FKLASHMYCSFYP--------------------PDEDEEEGDCEE-EEFEPSTQYEYGTE 952 +S+M S P P D+EE EE P Sbjct 945 CAWSSNMTFSINPVEDVEEVEEFIEDDYLSDELPIADDEEAWARAVEEVMPLDDILVAEI 1004 Query 953 DDYQGKPLEFGATSA---ALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQ 1009 + + PLE S ++ E QE DS + G D + + E Sbjct 1005 ELEEDPPLETALESVEAEVVETAEAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETD 1064 Query 1010 PQLEME----------LTPVV----------QTIEVNSFSGYLKLTDNVYIKNAD----- 1044 LE+E +T +V Q V+S + ++N + +D Sbjct 1065 DVLELETAVVGGPVSDVTAIVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNE 1124 Query 1045 ---------IVEEAKKVKP---------------TVVVNAANVYLKHGGGVAGALNK--- 1077 IV+ + +KP TV+ N+ + L +A L K Sbjct 1125 LLCSETKVEIVQPRQDLKPRRSRKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCIL 1184 Query 1078 --------------------ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHV 1117 A+ +Q ESD+YI+ NGPL VG S +L GH LA LHV Sbjct 1185 VNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHV 1244 Query 1118 VGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADP 1158 VGP+ ED LLK Y+ FN+H +++ PL+SAGIF DP Sbjct 1245 VGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFSVDP 1285 >sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 1831 bits (4742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1081/2906 (37%), Positives = 1597/2906 (55%), Gaps = 160/2906 (6%) Query 1568 IKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTL 1627 + V TVD +N + V +G+ G + DG +VTK++ ++GK F+ + Sbjct 1611 VDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEA 1670 Query 1628 RVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIE 1687 + A + D L +Y + L K W + K ++NNCY+ A L LQ + Sbjct 1671 DLVAVKDAFGFDEPQLLKYYTMLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1729 Query 1688 LKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRV 1747 LKF Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1730 LKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCN 1789 Query 1748 LNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 L VCK CG +Q KGV+AVM+ GTL +G I CTCG + + Q PF++ Sbjct 1790 LEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFLIC 1847 Query 1808 SAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVF 1867 S P +L A+ +TG GHY H+ K D + K SE KG TD Sbjct 1848 SNTPEGRKLPDDVVA-ANIFTGG-SVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCL 1905 Query 1868 YKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--NAS 1924 Y +N T + T+ LD V C E P L YY + Y+T +PI + + + Sbjct 1906 YLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVDGV 1964 Query 1925 FDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGA 1983 + NFK V +I A+ LN G+ E K+T +P GDVV Y + G Sbjct 1965 YTNFKLVGHSI--AEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGC 2022 Query 1984 KLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFDV-----------L 2028 KP+VW H + TY +P+ C ++ PV+ S D + Sbjct 2023 ITFGKPVVWLGHEEASLKSLTYFNRPSVVC-ENKFNVLPVDVSEPTDKGPVPAAVLVTGV 2081 Query 2029 KSEDAQGMDNLACEDLKPVSE--------EVVENPTIQ-KDVLECNV----KTTEVVGDI 2075 DA +A E S EV + P++ DV E + K +V G + Sbjct 2082 PGADASAGAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSV 2141 Query 2076 ILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPW 2135 ++ + K+ + + D+ ++ + NELSR+ VNS Sbjct 2142 VVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRL-------------VNS--- 2185 Query 2136 DTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLCTF 2182 T+ Y K + K+V+ ++ R + C + +F F Sbjct 2186 PTVREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWIKF 2245 Query 2183 TRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIW-- 2232 N+ K T +A K K C A N L++ N+S + ++W Sbjct 2246 ----NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFN 2298 Query 2233 FLLLSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIAT 2280 FL +V L + + + G+ + C Y+ GY +S Sbjct 2299 FLYANVILSDFYLPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS------- 2351 Query 2281 YCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTRF 2337 +C GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T Sbjct 2352 FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDY-ISLFKLVVELVIGYSLYTVC 2410 Query 2338 FYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWK 2395 FY L + MQL ++ F+ + W L + + M P ++R YI + Y V+ Sbjct 2411 FYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYC 2470 Query 2396 SYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNC 2455 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+NC Sbjct 2471 LCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNC 2530 Query 2456 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYER 2515 +++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y+ Sbjct 2531 NSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDD 2590 Query 2516 HSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQA 2575 + S FV+++ L + KG +V+V + ++ +++ A+V+Y+Q + +P+L++++ Sbjct 2591 VNASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVEKK 2648 Query 2576 LVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFIS 2635 L++ V+ MFD YV++ + +V + L + V A L + V L+ V+ TFI Sbjct 2649 LITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIG 2708 Query 2636 AARQG-FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 2694 AR+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I Sbjct 2709 CARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQN 2768 Query 2695 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 2754 +A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V ++ Sbjct 2769 NAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPIL 2828 Query 2755 TTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDG 2814 TT +LKGG + + L+ L L+ V + + P + + K +K ID Sbjct 2829 TTPFSLKGGAVFSRMLQWLFVANLICFIV---LWALMPTYAVHKSDMQLPLYASFKVIDN 2885 Query 2815 GVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGT 2872 GV RD++ TD CFANK FD W+ G Y N KACP++ AVI +++G + +P T Sbjct 2886 GVLRDVSVTDACFANKFNQFDQWYESTFGLAYYRNSKACPVVVAVIDQDIGHTLFNVPTT 2945 Query 2873 ILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPY 2932 +LR LHF+ F+ CYTP I Y +F S CVL++ CT+ A G P PY Sbjct 2946 VLR-YGFHVLHFITHAFATDSVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHPY 3004 Query 2933 CYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCER 2991 CY V+ + Y SL P RY L + I+FP EG VRVV T YCR G CE Sbjct 3005 CYTGGVMHNASLYSSLAPHVRYNLASSNGYIRFPEVVSEGIVRVVRTRSMTYCRVGLCEE 3064 Query 2992 SEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGG 3051 +E G+C + + WVLNN YYR++PG FCG +A +L+ + L++PI ++AS VAG Sbjct 3065 AEEGICFNFNRSWVLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGA 3124 Query 3052 IVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLY 3111 I+AI+V YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L +Y+ Y Y Sbjct 3125 ILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFY 3184 Query 3112 LTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVS 3171 T Y +++S + H+QW+VM+ ++P W I Y+ + + H W FS R++ S Sbjct 3185 TTLYFPSEISVVMHLQWLVMYGAIMPLWFCIIYVAVVVSNHALWLFS--YCRKIGTEVRS 3242 Query 3172 FSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAAC 3231 TFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC Sbjct 3243 DGTFEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAAC 3300 Query 3232 CHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTL 3290 LAKA+ F+ N+G+DVLYQPP S+T++ LQSG KM P+ KVE C+V VT G TL Sbjct 3301 SQLAKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVSPTSKVEPCIVSVTYGNMTL 3360 Query 3291 NGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVL 3350 NGLWLDD VYCPRHVIC+S DM +P+Y +LL R ++ +F V +G + L V+ + MQ C L Sbjct 3361 NGLWLDDKVYCPRHVICSSADMTDPDYPNLLCRVTSSDFCVMSGRMSLTVMSYQMQGCQL 3420 Query 3351 KLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGS 3410 L V NP TPKY F ++PG+TF+VLA YNG P G + +R + TIKGSFL GSCGS Sbjct 3421 VLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSCGS 3480 Query 3411 VGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAW 3470 VG+ + D V F YMH +EL TG H GTD GNFYGP+ D Q Q D T TVNV+AW Sbjct 3481 VGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAW 3540 Query 3471 LYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAS 3530 LYAA+ N WF+ + +L +FN+ AM + + D V L L++ TG+ V + A+ Sbjct 3541 LYAAIFNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQVLAA 3598 Query 3531 LKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTS 3590 +K L +G G+ ILGS +LEDE TP DV +Q +GV QS R IKGT W+L + Sbjct 3599 IKR-LHSGFQGKQILGSCVLEDE-TPSDVYQQLAGVKLQSKRTRVIKGTCCWILASTFLF 3656 Query 3591 LLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYF 3650 ++ +W++F ++ + L + + +FAM+ +KHKH +L ++++P L T Sbjct 3657 CSIISAFVKWTMFMYVTTH-MLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTFYTN 3715 Query 3651 NMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILM---TARTVYDDGARR 3707 +V S+ WL ++ + D V+Y VVLL+ M T R++ D Sbjct 3716 YLVVYKQSFRGLAYAWLSHFVPAVD-YTYMDEVLY--GVVLLVAMVFVTMRSINHDVFSI 3772 Query 3708 VWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARG-IVFMCVEYC 3766 ++ + +++LV Y+G L++ + ++ + S+ Y+ TT++ LA ++ + Sbjct 3773 MFLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTYTW--TTMLSLATAKVIAKWLAVN 3828 Query 3767 PIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQ 3826 ++F ++ ++L Y +GY C CY+G+ LLN FR+ LGVY+Y +S QE RYMN+ Sbjct 3829 VLYFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNAN 3888 Query 3827 GLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSK 3886 GL PP+NS +A LN KLLG+GG P I+V+ +QS+++DVKC +VVLL+ LQ L + S+SK Sbjct 3889 GLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQSRLTDVKCANVVLLNCLQHLHIASNSK 3948 Query 3887 LWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRAT 3940 LW C LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + + Sbjct 3949 LWQYCSTLHNEILATSDLSMAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDNTV 4008 Query 3941 LQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQR 3999 LQA+ SEF ++ S+ + A++ ++A A+G + + +K+L+K+ N+AKS ++RD A+ R Sbjct 4009 LQALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVAR 4068 Query 4000 KLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPL 4059 KLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPL Sbjct 4069 KLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPL 4128 Query 4060 NIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNS 4119 N IP T+ L +++PD + D TYA +W IQ + DAD + QL+EI + Sbjct 4129 NAIPSLTSNTLTIIVPDKQVFDQVVDNVYVTYAGNVWHIQFIQDADGAVKQLNEIDV--- 4185 Query 4120 PNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKG 4177 N WPL++ A R N S V LQNNEL P LR +G+ T YYNTT Sbjct 4186 -NSTWPLVIAANRHNEVSTVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGT 4242 Query 4178 GRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNL 4237 G+ V A+LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L Sbjct 4243 GKIVYAILSDCDGLKYTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTL 4301 Query 4238 NRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKM 4297 RG V+G+L++TVRLQAG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKM Sbjct 4302 ARGWVVGTLSSTVRLQAGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKM 4361 Query 4298 LCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCA 4357 LC H GTG AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P Sbjct 4362 LCDHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-I 4420 Query 4358 NDPVGFTLKNTVCTVCGMWKGYGCSC 4383 DPV + L + VC VCG W+ CSC Sbjct 4421 KDPVSYVLTHDVCQVCGFWRDGSCSC 4446 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/252 (27%), Positives = 118/252 (47%), Gaps = 20/252 (8%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T NV D+++ + V V+VN AN + HG GVAGA+ + +A E+ D + Sbjct 1320 ITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKA 1379 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQHEVLLAPLLS 1150 G +VG +G L K L++VGP+ +G Q LL+ AY++ N+ + ++ L+S Sbjct 1380 QGVCQVGECYESAGGKLCKKVLNIVGPDA-RGHGKQCYSLLERAYQHINKCDNVVTTLIS 1438 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1439 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQLAKNLCR 1498 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 +VK F+T + S+ ++C L+E + L ++ L ++ N + Sbjct 1499 DVK-FVTNACSSLFS--------ESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1549 Query 1264 HPDSATLVSDID 1275 P LV+ D Sbjct 1550 LPTDWRLVNKFD 1561 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 108/457 (24%), Positives = 188/457 (41%), Gaps = 59/457 (13%) Query 569 ILDGISQYSLRLIDA-MMFTSDLA------TNNLVVMAYITGGVVQLTSQWLTNIFGTVY 621 +LDG+ S LI + FTS + T+ + MA + V++ ++++ + G + Sbjct 576 LLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLA 635 Query 622 EKLKPVLDWLEEKFKEGVEFLRD------GWEIVKFISTCACEIVGGQIVTCAKEIKESV 675 + K + + K E + D GW + ++ V ++T +E+ E V Sbjct 636 VRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVN--GLFAVANGVITFVQEVPELV 693 Query 676 QTFFKLVNKFLALCADSI---IIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMP 732 + F F + DS+ I+ G + + SK +Y V + + +MP Sbjct 694 KNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSK-VYE--VVQKSLSAYVMP 750 Query 733 LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTPVCINGLML 790 + E L GE P V + + ++ P + + P +CI + Sbjct 751 VGC-SEATCLVGEIEPA-------VFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLY 802 Query 791 LEIKDTEKYCALAPN--MMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGYKSVNITFELDE 847 + + Y + N + V + + A KV F D V ++ + + ITF LD Sbjct 803 MAKCGDQFYPVVVDNDTVGVLDQCWRFPC-AGKKVEFNDKPKVRKIPSTRKIKITFALDA 861 Query 848 RIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPLGIDLDEWSMAT 904 D VL++ CS + V+ ++E VV DAV TL P E + T + LD + Sbjct 862 TFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGDY 921 Query 905 YYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGA 964 YLFDE G+ +A MYCSF PD++ DC + + + + +DD A Sbjct 922 VYLFDEGGDEVIAPRMYCSFSAPDDE----DCVAADVVDADENQ---DDD---------A 965 Query 965 TSAALQPEEEQEED-----WLDDDSQQTVGQQDGSED 996 +A+ + QEED ++ DS+ V E+ Sbjct 966 EDSAVLVADTQEEDGVAKGQVEADSEICVAHTGSQEE 1002 >sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1 Length=4421 Score = 1830 bits (4741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1066/2894 (37%), Positives = 1592/2894 (55%), Gaps = 128/2894 (4%) Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1660 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1718 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1719 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1778 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF+ Sbjct 1779 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPFL 1836 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ + G GHY H+ D + K + G +TD Sbjct 1837 ICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTD 1894 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--N 1922 Y +N + T T Y LD V +P L YY + Y+T +PI +P+ + Sbjct 1895 CLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKVD 1953 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I LN G+ E KVT +P GDVV Y + K Sbjct 1954 GVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2011 Query 1982 GAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNL 2039 G + KP++W H + N TY ++ ++ N + VL +D++ Sbjct 2012 GCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVL------SVDSV 2055 Query 2040 ACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA 2098 + E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2056 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2115 Query 2099 YVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTN 2155 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2116 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPKI 2171 Query 2156 IVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCL--EA 2213 R + ++ + F + L FT + + N FCL + Sbjct 2172 FKARAIEFY--GFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNL------FCLALKN 2223 Query 2214 SFNYLKSPNFSKLINII-----IWF--LLLSVCLGSL---------IYSTAALGVLMSNL 2257 +F + F K ++ WF L ++V I+ + + + Sbjct 2224 AFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATF 2283 Query 2258 GMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS---F 2314 G+ + C Y + + T + +C GS C +C SG D LDTY +++ +Q + F Sbjct 2284 GLVTICDFYSKLGVGFT----SHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLF 2339 Query 2315 KWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLV 2372 + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2340 DY-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVA 2398 Query 2373 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 2432 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R Sbjct 2399 NMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIR 2458 Query 2433 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 2492 + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2459 YYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVT 2518 Query 2493 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2552 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2519 DIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRA 2576 Query 2553 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 2612 + +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + Sbjct 2577 NFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNF 2636 Query 2613 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 2671 V A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ N Sbjct 2637 VNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYN 2696 Query 2672 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 2731 N + TY K +N+ DLG I A+H+ VAK NI+ IW + F L+ L+ +++ Sbjct 2697 NLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKK 2756 Query 2732 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLIT 2791 A K L KLT V ++TT +LKGG +++N L L ++L+ + + + Sbjct 2757 ACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALL 2813 Query 2792 PVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGS--YTNDK 2849 P + + K +K ID GV RDI+ D CFANK FD W+ GS Y N Sbjct 2814 PTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNSM 2873 Query 2850 ACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFA 2909 CP++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF Sbjct 2874 DCPIVVAVMDEDIGSTMFNVPTKVLRY-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFY 2932 Query 2910 TSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTY 2968 S CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ Sbjct 2933 ASGCVLSSLCTMFKRGDGTPHPYCYTDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVI 2992 Query 2969 LEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLT 3028 EG VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 2993 SEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDFFDLFY 3052 Query 3029 NMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMS 3088 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ ++ Sbjct 3053 QFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCIN 3112 Query 3089 FTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICI 3148 F +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ + Sbjct 3113 FLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMV 3172 Query 3149 STKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYL 3208 H W FS R++ N S STFEE +L TF++ K+ Y +L++ V YNRYL Sbjct 3173 IANHVLWLFS--YCRKIGVNVCSDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRYL 3228 Query 3209 ALYNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFR 3267 +LYNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG Sbjct 3229 SLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIV 3288 Query 3268 KMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNH 3327 KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC S +M P+Y LL R + Sbjct 3289 KMVSPTSKIEPCLVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLG 3348 Query 3328 NFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSG 3387 +F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G Sbjct 3349 DFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQG 3408 Query 3388 VYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGP 3447 + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP Sbjct 3409 AFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFNGNFYGP 3468 Query 3448 FVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQ 3507 + D Q Q D TVNV+AWLYAA++N WF+ ++ DFN+ AM + + Sbjct 3469 YRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKA 3528 Query 3508 DHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVT 3567 D V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Sbjct 3529 DLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVK 3585 Query 3568 FQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM 3627 QS KR IK T +W+L++ ++ +W++F ++ + + ++ +F M+ Sbjct 3586 LQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMML 3644 Query 3628 FVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYA 3686 VKHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3645 LVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSHFVPAVNFTYVYEVFYGC 3704 Query 3687 SAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSG 3746 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3705 ILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYTW 3762 Query 3747 VVTTVMFLARGIVFMCVEYCPIFFITG-NTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFR 3805 TT++ LA + IF+ T ++ I+L Y F+GY +CY+G F LLN FR Sbjct 3763 --TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFR 3820 Query 3806 LTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDV 3865 + +GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++DV Sbjct 3821 MPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDV 3880 Query 3866 KCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAV 3925 KC +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL S AV Sbjct 3881 KCANVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFSNPAAV 3940 Query 3926 D------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLK 3978 D I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ +K Sbjct 3941 DTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIK 4000 Query 3979 KLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLR 4038 +L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+R Sbjct 4001 QLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVR 4060 Query 4039 KLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEI 4098 KLDN ALN+I++NA GCVPL+ IP A L ++IPD + D TYA ++W I Sbjct 4061 KLDNQALNSILDNAVKGCVPLSAIPALAANTLTIIIPDKQVFDKVVDNVYVTYAGSVWHI 4120 Query 4099 QQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCAA 4156 Q V DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ + Sbjct 4121 QTVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNS 4176 Query 4157 GT-----TQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEP 4211 G+ T C YYN GR V A+LSD+ LK+ + K DG + EL+P Sbjct 4177 GSDINCNIPTQC-------YYNNVSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELDP 4228 Query 4212 PCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCA 4271 PC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CA Sbjct 4229 PCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCA 4288 Query 4272 FAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCR 4331 F+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR Sbjct 4289 FSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCR 4348 Query 4332 CHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPML 4391 ++HP+ G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC + Sbjct 4349 ARVEHPDVDGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SSVAV 4406 Query 4392 QSADAQSFLNGFAV 4405 QS D +FLNG V Sbjct 4407 QSKDL-NFLNGLGV 4419 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 1092 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 1149 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 1150 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 SAGIF SL + V V L +K +D Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1462 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 103/422 (24%), Positives = 171/422 (41%), Gaps = 63/422 (15%) Query 562 LQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW-------- 612 L ++ I +SQ+S + D + L + + V YI V +L +Q+ Sbjct 562 LIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLV 621 Query 613 --LTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKE 670 + N F T+ + P WL + G F+ + A I AK Sbjct 622 NKMVNWFNTMLDASAPATGWLLYQLLNGF-----------FVVSQANLNFVALIPDYAKI 670 Query 671 IKESVQTFFKLVNKFLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSRE 725 + TFFKL+ L ++ LK +N +G F S GL Sbjct 671 LVNKFYTFFKLL---LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI-------- 719 Query 726 ETGLLMPLKA-PKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTP 782 G ++P A ++I F EG + E V+++ ++ ++ S E + P Sbjct 720 -PGFVLPCNAQEQQIYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEK 771 Query 783 VCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG-----APTKVTFGDDTVI-EVQGY 836 +CI M + K +K+ P +M N L A KV F + V+ E+ Sbjct 772 ICIIDNMYMG-KCGDKF---FPIVMNDKNICLLDHAWRFPCAGRKVNFNEKPVVMEIPSL 827 Query 837 KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPL 893 +V + F+LD D +L + CS + VE G V++F VV DA+ L E + + Sbjct 828 MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKEHPVVGYQV 887 Query 894 GIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTE 952 L++ + YLFDE+G+ +AS MYC+F D ED + E+ + + + Sbjct 888 RAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDD 947 Query 953 DD 954 +D Sbjct 948 ED 949 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 1658 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 1717 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1095 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1154 Query 1718 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 1775 K + + G V + + ++++ N C CG L G++AV + G + Sbjct 1155 IPKAIVLPQGGYVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDAVFFYGDI- 1209 Query 1776 YEQFKKGVQIPCTCGKQATKYLVQQESP 1803 V C CG T L+ + P Sbjct 1210 -------VSHVCKCGHNMT--LIAADLP 1228 >sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1 Length=4471 Score = 1826 bits (4729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1066/2889 (37%), Positives = 1593/2889 (55%), Gaps = 118/2889 (4%) Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1710 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1768 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1769 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1828 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF+ Sbjct 1829 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPFL 1886 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ + G GHY H+ D + K + G +TD Sbjct 1887 ICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTD 1944 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--N 1922 Y +N + T T Y LD V +P L YY + Y+T +PI +P+ + Sbjct 1945 CLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKVD 2003 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I LN G+ E KVT +P GDVV Y + K Sbjct 2004 GVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2061 Query 1982 GAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNL 2039 G + KP++W H + N TY ++ ++ N + VL +D++ Sbjct 2062 GCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLS------VDSV 2105 Query 2040 ACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA 2098 + E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2106 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2165 Query 2099 YVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTN 2155 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2166 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPKI 2221 Query 2156 IVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCL--EA 2213 R + ++ + F + L FT + + N FCL + Sbjct 2222 FKARAIEFY--GFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNL------FCLALKN 2273 Query 2214 SFNYLKSPNFSKLINII-----IWF--LLLSVCLGSL---------IYSTAALGVLMSNL 2257 +F + F K ++ WF L ++V I+ + + + Sbjct 2274 AFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATF 2333 Query 2258 GMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS---F 2314 G+ + C Y + + T + +C GS C +C SG D LDTY +++ +Q + F Sbjct 2334 GLVTICDFYSKLGVGFT----SHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLF 2389 Query 2315 KWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLV 2372 + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2390 DY-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVA 2448 Query 2373 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 2432 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R Sbjct 2449 NMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIR 2508 Query 2433 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 2492 + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2509 YYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVT 2568 Query 2493 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2552 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2569 DIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRA 2626 Query 2553 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 2612 + +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + Sbjct 2627 NFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNF 2686 Query 2613 VATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCN 2671 V A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ N Sbjct 2687 VNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYN 2746 Query 2672 NYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRS 2731 N + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ Sbjct 2747 NLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKK 2806 Query 2732 AAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLIT 2791 A K L KLT V ++TT +LKGG +++N L L V+L+ + + + Sbjct 2807 ACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFVSLICFI---LLWALL 2863 Query 2792 PVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGS--YTNDK 2849 P + + K +K ID GV RDI+ D CFANK FD W+ GS Y N Sbjct 2864 PTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNSM 2923 Query 2850 ACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFA 2909 CP++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF Sbjct 2924 DCPIVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFY 2982 Query 2910 TSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTY 2968 S CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ Sbjct 2983 ASGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVI 3042 Query 2969 LEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLT 3028 EG VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 3043 SEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFY 3102 Query 3029 NMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMS 3088 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ ++ Sbjct 3103 QFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVVVWCIN 3162 Query 3089 FTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICI 3148 F +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ + Sbjct 3163 FLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMV 3222 Query 3149 STKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYL 3208 H W FS R++ N S STFEE +L TF++ K+ Y +L++ V YNRYL Sbjct 3223 IANHVLWLFS--YCRKIGVNVCSDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRYL 3278 Query 3209 ALYNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFR 3267 +LYNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG Sbjct 3279 SLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIV 3338 Query 3268 KMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNH 3327 KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC+S +M P+Y LL R + Sbjct 3339 KMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICSSSNMNEPDYSALLCRVTLG 3398 Query 3328 NFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSG 3387 +F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G Sbjct 3399 DFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGNVKPGETFTVLAAYNGRPQG 3458 Query 3388 VYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGP 3447 + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP Sbjct 3459 AFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGP 3518 Query 3448 FVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQ 3507 + D Q Q D TVNV+AWLYAA++N WF+ + DFN+ AM + + Sbjct 3519 YRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVKA 3578 Query 3508 DHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVT 3567 D V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Sbjct 3579 DLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVK 3635 Query 3568 FQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM 3627 QS KR IK T +W+L++ ++ +W++F ++ + + ++ +F M+ Sbjct 3636 LQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMML 3694 Query 3628 FVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYA 3686 VKHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3695 LVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSYFVPAVNFTYVYEVFYGC 3754 Query 3687 SAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSG 3746 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3755 ILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYTW 3812 Query 3747 VVTTVMFLARGIVFMCVEYCPIFFITG-NTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFR 3805 TT++ LA + IF+ T ++ I+L Y F+GY +CY+G F LLN FR Sbjct 3813 --TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFR 3870 Query 3806 LTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDV 3865 + +GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++DV Sbjct 3871 MPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDV 3930 Query 3866 KCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAV 3925 KC +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL + AV Sbjct 3931 KCANVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFANPAAV 3990 Query 3926 D------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLK 3978 D I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ +K Sbjct 3991 DTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIK 4050 Query 3979 KLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLR 4038 +L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+R Sbjct 4051 QLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVR 4110 Query 4039 KLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEI 4098 KLDN ALN+I++NA GCVPL+ IP A L +VIPD + D TYA ++W I Sbjct 4111 KLDNQALNSILDNAVKGCVPLSAIPALAANTLTIVIPDKQVFDKVVDNVYVTYAGSVWHI 4170 Query 4099 QQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCAA 4156 Q V DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ + Sbjct 4171 QTVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNS 4226 Query 4157 GTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFV 4216 G+ + YYN GR V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4227 GSDMNC--NIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELDPPCKFS 4283 Query 4217 TDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDA 4276 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD Sbjct 4284 IQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDP 4343 Query 4277 AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDH 4336 K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++H Sbjct 4344 KKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEH 4403 Query 4337 PNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADA 4396 P+ G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC +QS D Sbjct 4404 PDVDGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SSVAVQSKDL 4461 Query 4397 QSFLNGFAV 4405 +FLNGF V Sbjct 4462 -NFLNGFGV 4469 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1358 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1417 Query 1092 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 1149 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1418 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1477 Query 1150 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 SAGIF SL + V V L +K +D Sbjct 1478 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1512 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 103/422 (24%), Positives = 172/422 (41%), Gaps = 63/422 (15%) Query 562 LQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW-------- 612 L ++ I +SQ+S + D + L + + V YI V +L +Q+ Sbjct 562 LIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLV 621 Query 613 --LTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKE 670 + N F T+ + P WL + G+ F+ + A I AK Sbjct 622 NKMVNWFNTMLDASAPATGWLLYQLLNGL-----------FVVSQANFNFVALIPDYAKI 670 Query 671 IKESVQTFFKLVNKFLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSRE 725 + TFFKL+ L ++ LK +N +G F S GL Sbjct 671 LVNKFYTFFKLL---LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI-------- 719 Query 726 ETGLLMPLKA-PKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTP 782 G ++P A ++I F EG + E V+++ ++ ++ S E + P Sbjct 720 -PGFVLPCNAQEQQIYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEK 771 Query 783 VCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG-----APTKVTFGDDTVI-EVQGY 836 +CI M + K +K+ P +M N L A KV F + V+ E+ Sbjct 772 ICIIDNMYMG-KCGDKF---FPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSL 827 Query 837 KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPL 893 +V + F+LD D +L + CS + VE G V++F VV DA+ L E + + Sbjct 828 MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKEHPVVGYQV 887 Query 894 GIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTE 952 L++ + YLFDE+G+ +AS MYC+F D ED + E+ + + + Sbjct 888 RAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDD 947 Query 953 DD 954 +D Sbjct 948 ED 949 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 1658 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 1717 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1145 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1204 Query 1718 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 1775 K + + G V + + ++++ N C CG L G++A+ + G + Sbjct 1205 IPKAIVLPQGGFVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDALFFYGDI- 1259 Query 1776 YEQFKKGVQIPCTCGKQATKYLVQQESP 1803 V C CG T L+ + P Sbjct 1260 -------VSHVCKCGHNMT--LIAADLP 1278 >sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 1825 bits (4726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1059/2873 (37%), Positives = 1582/2873 (55%), Gaps = 128/2873 (4%) Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1660 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1718 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1719 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1778 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF+ Sbjct 1779 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPFL 1836 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ + G GHY H+ D + K + G +TD Sbjct 1837 ICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTD 1894 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--N 1922 Y +N + T T Y LD V +P L YY + Y+T +PI +P+ + Sbjct 1895 CLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKVD 1953 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I LN G+ E KVT +P GDVV Y + K Sbjct 1954 GVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2011 Query 1982 GAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNL 2039 G + KP++W H + N TY ++ ++ N + VL +D++ Sbjct 2012 GCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVL------SVDSV 2055 Query 2040 ACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA 2098 + E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2056 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2115 Query 2099 YVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTN 2155 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2116 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPKI 2171 Query 2156 IVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASF 2215 R + ++ + F + L FT + + N FCL A Sbjct 2172 FKARAIEFY--GFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNL------FCL-ALK 2222 Query 2216 NYLKSPNFSKLIN--------IIIWF--LLLSVCLGSL---------IYSTAALGVLMSN 2256 N ++ +S I + WF L ++V I+ + + + Sbjct 2223 NAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKAT 2282 Query 2257 LGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS--- 2313 G+ + C Y + + T + +C GS C +C SG D LDTY +++ +Q + Sbjct 2283 FGLVTICDFYSKLGVGFT----SHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVL 2338 Query 2314 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINL 2371 F + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2339 FDY-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFV 2397 Query 2372 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 2431 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV Sbjct 2398 ANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVI 2457 Query 2432 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2491 R + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2458 RYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVV 2517 Query 2492 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 2551 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + Sbjct 2518 TDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADR 2575 Query 2552 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 2611 ++ +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + Sbjct 2576 ANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNN 2635 Query 2612 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 2670 V A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ Sbjct 2636 FVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENY 2695 Query 2671 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 2730 NN + TY K +N+ DLG I A+H+ VAK NI+ IW + F L+ L+ +++ Sbjct 2696 NNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLK 2755 Query 2731 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLI 2790 A K L KLT V ++TT +LKGG +++N L L ++L+ + + + Sbjct 2756 KACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWAL 2812 Query 2791 TPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGS--YTND 2848 P + + K +K ID GV RDI+ D CFANK FD W+ GS Y N Sbjct 2813 LPTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNS 2872 Query 2849 KACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDF 2908 CP++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF Sbjct 2873 MDCPIVVAVMDEDIGSTMFNVPTKVLRY-GFHVLHFLTYAFASDSVQCYTPHIQISYNDF 2931 Query 2909 ATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNT 2967 S CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ Sbjct 2932 YASGCVLSSLCTMFKRGDGTPHPYCYTDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDV 2991 Query 2968 YLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLL 3027 EG VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 2992 ISEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDFFDLF 3051 Query 3028 TNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLM 3087 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ + Sbjct 3052 YQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCI 3111 Query 3088 SFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIIC 3147 +F +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ Sbjct 3112 NFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAM 3171 Query 3148 ISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRY 3207 + H W FS R++ N S STFEE +L TF++ K+ Y +L++ V YNRY Sbjct 3172 VIANHVLWLFS--YCRKIGVNVCSDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRY 3227 Query 3208 LALYNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGF 3266 L+LYNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG Sbjct 3228 LSLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGI 3287 Query 3267 RKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSN 3326 KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC S +M P+Y LL R + Sbjct 3288 VKMVSPTSKIEPCLVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTL 3347 Query 3327 HNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPS 3386 +F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P Sbjct 3348 GDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQ 3407 Query 3387 GVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYG 3446 G + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYG Sbjct 3408 GAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFNGNFYG 3467 Query 3447 PFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLT 3506 P+ D Q Q D TVNV+AWLYAA++N WF+ ++ DFN+ AM + + Sbjct 3468 PYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVK 3527 Query 3507 QDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGV 3566 D V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Sbjct 3528 ADLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGV 3584 Query 3567 TFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAM 3626 QS KR IK T +W+L++ ++ +W++F ++ + + ++ +F M Sbjct 3585 KLQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMM 3643 Query 3627 MFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMY 3685 + VKHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3644 LLVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSHFVPAVNFTYVYEVFYG 3703 Query 3686 ASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYS 3745 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3704 CILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYT 3761 Query 3746 GVVTTVMFLARGIVFMCVEYCPIFFITG-NTLQCIMLVYCFLGYFCTCYFGLFCLLNRYF 3804 TT++ LA + IF+ T ++ I+L Y F+GY +CY+G F LLN F Sbjct 3762 W--TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVF 3819 Query 3805 RLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSD 3864 R+ +GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++D Sbjct 3820 RMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTD 3879 Query 3865 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3924 VKC +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL S A Sbjct 3880 VKCANVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFSNPAA 3939 Query 3925 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVL 3977 VD I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ + Sbjct 3940 VDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQI 3999 Query 3978 KKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4037 K+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 4000 KQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4059 Query 4038 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWE 4097 RKLDN ALN+I++NA GCVPL+ IP A L ++IPD + D TYA ++W Sbjct 4060 RKLDNQALNSILDNAVKGCVPLSAIPALAANTLTIIIPDKQVFDKVVDNVYVTYAGSVWH 4119 Query 4098 IQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCA 4155 IQ V DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ Sbjct 4120 IQTVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVN 4175 Query 4156 AGT-----TQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELE 4210 +G+ T C YYN GR V A+LSD+ LK+ + K DG + EL+ Sbjct 4176 SGSDINCNIPTQC-------YYNNVSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELD 4227 Query 4211 PPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFC 4270 PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS C Sbjct 4228 PPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLC 4287 Query 4271 AFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYC 4330 AF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YC Sbjct 4288 AFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYC 4347 Query 4331 RCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSC 4383 R ++HP+ G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC Sbjct 4348 RARVEHPDVDGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSC 4399 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 1092 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 1149 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 1150 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 SAGIF SL + V V L +K +D Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1462 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 103/422 (24%), Positives = 171/422 (41%), Gaps = 63/422 (15%) Query 562 LQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW-------- 612 L ++ I +SQ+S + D + L + + V YI V +L +Q+ Sbjct 562 LIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLV 621 Query 613 --LTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKE 670 + N F T+ + P WL + G F+ + A I AK Sbjct 622 NKMVNWFNTMLDASAPATGWLLYQLLNGF-----------FVVSQANLNFVALIPDYAKI 670 Query 671 IKESVQTFFKLVNKFLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSRE 725 + TFFKL+ L ++ LK +N +G F S GL Sbjct 671 LVNKFYTFFKLL---LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI-------- 719 Query 726 ETGLLMPLKA-PKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTP 782 G ++P A ++I F EG + E V+++ ++ ++ S E + P Sbjct 720 -PGFVLPCNAQEQQIYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEK 771 Query 783 VCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG-----APTKVTFGDDTVI-EVQGY 836 +CI M + K +K+ P +M N L A KV F + V+ E+ Sbjct 772 ICIIDNMYMG-KCGDKF---FPIVMNDKNICLLDHAWRFPCAGRKVNFNEKPVVMEIPSL 827 Query 837 KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPL 893 +V + F+LD D +L + CS + VE G V++F VV DA+ L E + + Sbjct 828 MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKEHPVVGYQV 887 Query 894 GIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTE 952 L++ + YLFDE+G+ +AS MYC+F D ED + E+ + + + Sbjct 888 RAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDD 947 Query 953 DD 954 +D Sbjct 948 ED 949 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 1658 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 1717 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1095 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1154 Query 1718 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 1775 K + + G V + + ++++ N C CG L G++AV + G + Sbjct 1155 IPKAIVLPQGGYVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDAVFFYGDI- 1209 Query 1776 YEQFKKGVQIPCTCGKQATKYLVQQESP 1803 V C CG T L+ + P Sbjct 1210 -------VSHVCKCGHNMT--LIAADLP 1228 >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 1823 bits (4722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1053/2865 (37%), Positives = 1581/2865 (55%), Gaps = 112/2865 (4%) Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1680 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1738 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1739 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1798 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF+ Sbjct 1799 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPFL 1856 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ + G GHY H+ D + K + G +TD Sbjct 1857 ICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTD 1914 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--N 1922 Y +N + T T Y LD V +P L YY + Y+T +PI +P+ + Sbjct 1915 CLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKVD 1973 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I LN G+ E KVT +P GDVV Y + K Sbjct 1974 GVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2031 Query 1982 GAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNL 2039 G + KP++W H + N TY ++ ++ N + VL +D++ Sbjct 2032 GCETFGKPVIWLCHDEASLNSLTY----------FNKPSFKSENRYSVL------SVDSV 2075 Query 2040 ACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA 2098 + E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2076 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2135 Query 2099 YVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTN 2155 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2136 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPKI 2191 Query 2156 IVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASF 2215 R + ++ + F + L FT T IA ++ L+ +F Sbjct 2192 FKARAIEFY--GFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNAF 2245 Query 2216 NYLKSPNFSKLINII-----IWF--LLLSVCLGSL---------IYSTAALGVLMSNLGM 2259 + F K ++ WF L ++V I+ + + + G+ Sbjct 2246 QTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGL 2305 Query 2260 PSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS---FKW 2316 + C Y + + T + +C GS C +C SG D LDTY +++ +Q + F + Sbjct 2306 VTICDFYSKLGVGFT----SHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDY 2361 Query 2317 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINLVQM 2374 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2362 -VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2420 Query 2375 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 2434 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2421 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2480 Query 2435 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 2494 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2481 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2540 Query 2495 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 2554 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + S + ++ Sbjct 2541 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVE--SDADRANF 2598 Query 2555 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 2614 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2599 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2658 Query 2615 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 2673 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2659 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2718 Query 2674 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 2733 + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ A Sbjct 2719 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKAC 2778 Query 2734 KKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPV 2793 K L KLT V ++TT +LKGG +++N L L ++L+ + + + P Sbjct 2779 VKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALLPT 2835 Query 2794 HVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGS--YTNDKAC 2851 + + K +K ID GV RDI+ D CFANK FD W+ GS Y N C Sbjct 2836 YSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMDC 2895 Query 2852 PLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATS 2911 P++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF S Sbjct 2896 PIVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYAS 2954 Query 2912 ACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLE 2970 CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ E Sbjct 2955 GCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISE 3014 Query 2971 GSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNM 3030 G VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 3015 GIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQF 3074 Query 3031 FTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFT 3090 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ ++F Sbjct 3075 FSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFL 3134 Query 3091 VLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICIST 3150 +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ + Sbjct 3135 MLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIA 3194 Query 3151 KHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLAL 3210 H W FS R++ N + STFEE +L TF++ K+ Y +L++ V YNRYL+L Sbjct 3195 NHVLWLFS--YCRKIGVNVCNDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRYLSL 3250 Query 3211 YNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKM 3269 YNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG KM Sbjct 3251 YNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKM 3310 Query 3270 AFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNF 3329 P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC S +M P+Y LL R + +F Sbjct 3311 VSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDF 3370 Query 3330 LVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3389 + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G + Sbjct 3371 TIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAF 3430 Query 3390 QCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 3449 MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ Sbjct 3431 HVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYR 3490 Query 3450 DRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3509 D Q Q D TVNV+AWLYAA++N WF+ ++ DFN+ AM + + D Sbjct 3491 DAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADL 3550 Query 3510 VDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ 3569 V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Q Sbjct 3551 V--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKLQ 3607 Query 3570 SAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFV 3629 S KR IK T +W+L++ ++ +W++F ++ + + ++ +F M+ V Sbjct 3608 SKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMMLLV 3666 Query 3630 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASA 3688 KHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3667 KHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYEVFYGCIL 3726 Query 3689 VVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVV 3748 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3727 CVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYTW-- 3782 Query 3749 TTVMFLARGIVFMCVEYCPIFFITG-NTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLT 3807 TT++ LA + IF+ T ++ I+L Y F+GY +CY+G F LLN FR+ Sbjct 3783 TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMP 3842 Query 3808 LGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKC 3867 +GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++DVKC Sbjct 3843 MGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKC 3902 Query 3868 TSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD- 3926 +VVLL+ LQ L V S+S+LW C LHN+IL D + AF+K+ LL VL + AVD Sbjct 3903 ANVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDT 3962 Query 3927 -----INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKL 3980 I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ +K+L Sbjct 3963 KCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQL 4022 Query 3981 KKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKL 4040 +K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKL Sbjct 4023 EKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKL 4082 Query 4041 DNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQ 4100 DN ALN+I++NA GCVPLN IP A L ++IPD + D YA ++W IQ Sbjct 4083 DNQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHIQT 4142 Query 4101 VVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCAAGT 4158 V DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ +G+ Sbjct 4143 VQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGS 4198 Query 4159 TQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTD 4218 + YYN GR V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4199 DMNC--NIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVV-LELDPPCKFSIQ 4255 Query 4219 TPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAK 4278 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD K Sbjct 4256 DVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKK 4315 Query 4279 AYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPN 4338 Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++HP+ Sbjct 4316 TYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPD 4375 Query 4339 PKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSC 4383 G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC Sbjct 4376 VDGLCKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSC 4419 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 1092 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 1149 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 1150 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 SAGIF SL + V V L +K +D Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1482 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 102/422 (24%), Positives = 172/422 (41%), Gaps = 63/422 (15%) Query 562 LQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW-------- 612 L ++ I +SQ+S + D + L + + V YI V +L +Q+ Sbjct 562 LIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLV 621 Query 613 --LTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKE 670 + N F T+ + P WL + G+ F+ + A I AK Sbjct 622 NKMVNWFNTMLDASAPATGWLLYQLLNGL-----------FVVSQANFNFVALIPDYAKI 670 Query 671 IKESVQTFFKLVNKFLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSRE 725 + TFFKL+ L ++ LK +N +G F S GL Sbjct 671 LVNKFYTFFKLL---LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI-------- 719 Query 726 ETGLLMPLKA-PKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTP 782 G ++P A ++I F EG + E V+++ ++ ++ S E + P Sbjct 720 -PGFVLPCNAQEQQIYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEK 771 Query 783 VCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG-----APTKVTFGDDTVI-EVQGY 836 +CI M + K +K+ P +M N L A KV F + V+ E+ Sbjct 772 ICIIDNMYMG-KCGDKF---FPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSL 827 Query 837 KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPL 893 +V + F+LD D +L + CS + VE G V++F VV DA+ L + + + Sbjct 828 MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQV 887 Query 894 GIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTE 952 L++ + YLFDE+G+ +AS MYC+F D ED + E+ + + + Sbjct 888 RAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDD 947 Query 953 DD 954 +D Sbjct 948 ED 949 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 1658 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 1717 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1115 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1174 Query 1718 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 1775 K + + G V + + ++++ N C CG L G++AV + G + Sbjct 1175 IPKAIVLPQGGYVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDAVFFYGDI- 1229 Query 1776 YEQFKKGVQIPCTCGKQATKYLVQQESP 1803 V C CG T L+ + P Sbjct 1230 -------VSHVCKCGHNMT--LIAADLP 1248 >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 1818 bits (4709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1058/2868 (37%), Positives = 1582/2868 (55%), Gaps = 118/2868 (4%) Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1710 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1768 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1769 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1828 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF+ Sbjct 1829 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPFL 1886 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ + G GHY H+ D + K + G +TD Sbjct 1887 ICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLTD 1944 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--N 1922 Y +N + T T Y LD V +P L YY + Y+T +PI +P+ + Sbjct 1945 CLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKVD 2003 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYKKPAS-RELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I LN G+ E KVT +P GDVV Y + K Sbjct 2004 GVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYFK 2061 Query 1982 GAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNL 2039 G + KP++W H + N TY ++ ++ N + VL +D++ Sbjct 2062 GCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVL------SVDSV 2105 Query 2040 ACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAA 2098 + E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2106 SEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWDM 2165 Query 2099 YVDNSSLTIKKPNELSRVLGLKTLA---THGLAAVNSVPWDTIANYAKPFLNKVVSTTTN 2155 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2166 YLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPKI 2221 Query 2156 IVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASF 2215 R + ++ + F + L FT + + N FCL A Sbjct 2222 FKARAIEFY--GFLKWLFIYVFSLLHFTNDKTIFYTTEIASKFTFNL------FCL-ALK 2272 Query 2216 NYLKSPNFSKLIN--------IIIWF--LLLSVCLGSL---------IYSTAALGVLMSN 2256 N ++ +S I + WF L ++V I+ + + + Sbjct 2273 NAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKAT 2332 Query 2257 LGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS--- 2313 G+ + C Y + + T + +C GS C +C SG D LDTY +++ +Q + Sbjct 2333 FGLVTICDFYSKLGVGFT----SHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVL 2388 Query 2314 FKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI--SNSWLMWLIINL 2371 F + ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + Sbjct 2389 FDY-VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFV 2447 Query 2372 VQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVR 2431 M P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV Sbjct 2448 ANMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVI 2507 Query 2432 RSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIV 2491 R + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V Sbjct 2508 RYYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVV 2567 Query 2492 DSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEE 2551 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V + S + Sbjct 2568 TDIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVE--SDADR 2625 Query 2552 SSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT 2611 ++ +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + Sbjct 2626 ANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNN 2685 Query 2612 LVATAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSC 2670 V A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ Sbjct 2686 FVNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENY 2745 Query 2671 NNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIR 2730 NN + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ Sbjct 2746 NNLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLK 2805 Query 2731 SAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLI 2790 A K L KLT V ++TT +LKGG +++N L L V+L+ + + + Sbjct 2806 KACVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFVSLICFI---LLWAL 2862 Query 2791 TPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGS--YTND 2848 P + + K +K ID GV RDI+ D CFANK FD W+ GS Y N Sbjct 2863 LPTYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNS 2922 Query 2849 KACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDF 2908 CP++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF Sbjct 2923 MDCPIVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDF 2981 Query 2909 ATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNT 2967 S CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ Sbjct 2982 YASGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDV 3041 Query 2968 YLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLL 3027 EG VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 3042 ISEGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLF 3101 Query 3028 TNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLM 3087 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ + Sbjct 3102 YQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVVVWCI 3161 Query 3088 SFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIIC 3147 +F +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ Sbjct 3162 NFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAM 3221 Query 3148 ISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRY 3207 + H W FS R++ N S STFEE +L TF++ K+ Y +L++ V YNRY Sbjct 3222 VIANHVLWLFS--YCRKIGVNVCSDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRY 3277 Query 3208 LALYNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGF 3266 L+LYNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG Sbjct 3278 LSLYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGI 3337 Query 3267 RKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSN 3326 KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC+S +M P+Y LL R + Sbjct 3338 VKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICSSSNMNEPDYSALLCRVTL 3397 Query 3327 HNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPS 3386 +F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P Sbjct 3398 GDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGNVKPGETFTVLAAYNGRPQ 3457 Query 3387 GVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYG 3446 G + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYG Sbjct 3458 GAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYG 3517 Query 3447 PFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLT 3506 P+ D Q Q D TVNV+AWLYAA++N WF+ + DFN+ AM + + Sbjct 3518 PYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVK 3577 Query 3507 QDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGV 3566 D V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Sbjct 3578 ADLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGV 3634 Query 3567 TFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAM 3626 QS KR IK T +W+L++ ++ +W++F ++ + + ++ +F M Sbjct 3635 KLQSKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMM 3693 Query 3627 MFVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMY 3685 + VKHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3694 LLVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSYFVPAVNFTYVYEVFYG 3753 Query 3686 ASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYS 3745 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3754 CILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYT 3811 Query 3746 GVVTTVMFLARGIVFMCVEYCPIFFITG-NTLQCIMLVYCFLGYFCTCYFGLFCLLNRYF 3804 TT++ LA + IF+ T ++ I+L Y F+GY +CY+G F LLN F Sbjct 3812 W--TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVF 3869 Query 3805 RLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSD 3864 R+ +GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++D Sbjct 3870 RMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTD 3929 Query 3865 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3924 VKC +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL + A Sbjct 3930 VKCANVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFANPAA 3989 Query 3925 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVL 3977 VD I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ + Sbjct 3990 VDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQI 4049 Query 3978 KKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4037 K+L+K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 4050 KQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4109 Query 4038 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWE 4097 RKLDN ALN+I++NA GCVPL+ IP A L +VIPD + D TYA ++W Sbjct 4110 RKLDNQALNSILDNAVKGCVPLSAIPALAANTLTIVIPDKQVFDKVVDNVYVTYAGSVWH 4169 Query 4098 IQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCA 4155 IQ V DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ Sbjct 4170 IQTVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVN 4225 Query 4156 AGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRF 4215 +G+ + YYN GR V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4226 SGSDMNC--NIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELDPPCKF 4282 Query 4216 VTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVD 4275 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD Sbjct 4283 SIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVD 4342 Query 4276 AAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHID 4335 K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++ Sbjct 4343 PKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVE 4402 Query 4336 HPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSC 4383 HP+ G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC Sbjct 4403 HPDVDGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSC 4449 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 79/155 (51%), Gaps = 2/155 (1%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1358 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1417 Query 1092 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 1149 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1418 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1477 Query 1150 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD 1184 SAGIF SL + V V L +K +D Sbjct 1478 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFD 1512 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 103/422 (24%), Positives = 172/422 (41%), Gaps = 63/422 (15%) Query 562 LQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW-------- 612 L ++ I +SQ+S + D + L + + V YI V +L +Q+ Sbjct 562 LIQSGIFFTSLMSQFSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLV 621 Query 613 --LTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKE 670 + N F T+ + P WL + G+ F+ + A I AK Sbjct 622 NKMVNWFNTMLDASAPATGWLLYQLLNGL-----------FVVSQANFNFVALIPDYAKI 670 Query 671 IKESVQTFFKLVNKFLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSRE 725 + TFFKL+ L ++ LK +N +G F S GL Sbjct 671 LVNKFYTFFKLL---LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI-------- 719 Query 726 ETGLLMPLKA-PKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTP 782 G ++P A ++I F EG + E V+++ ++ ++ S E + P Sbjct 720 -PGFVLPCNAQEQQIYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEK 771 Query 783 VCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGG-----APTKVTFGDDTVI-EVQGY 836 +CI M + K +K+ P +M N L A KV F + V+ E+ Sbjct 772 ICIIDNMYMG-KCGDKF---FPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSL 827 Query 837 KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPL 893 +V + F+LD D +L + CS + VE G V++F VV DA+ L E + + Sbjct 828 MTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKEHPVVGYQV 887 Query 894 GIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTE 952 L++ + YLFDE+G+ +AS MYC+F D ED + E+ + + + Sbjct 888 RAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDD 947 Query 953 DD 954 +D Sbjct 948 ED 949 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 16/148 (11%) Query 1658 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 1717 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1145 YFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTT 1204 Query 1718 CNKTV--GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 1775 K + + G V + + ++++ N C CG L G++A+ + G + Sbjct 1205 IPKAIVLPQGGFVADFAYWFLNQFDINA---YANWCCLKCG-FSFDLNGLDALFFYGDI- 1259 Query 1776 YEQFKKGVQIPCTCGKQATKYLVQQESP 1803 V C CG T L+ + P Sbjct 1260 -------VSHVCKCGHNMT--LIAADLP 1278 >sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 512/2005 OX=693999 GN=1a PE=3 SV=1 Length=4128 Score = 1228 bits (3176), Expect = 0.0, Method: Compositional matrix adjust. Identities = 789/2263 (35%), Positives = 1215/2263 (54%), Gaps = 159/2263 (7%) Query 2171 YFFTLLLQLCTFTRSTNSRIKASMPT---TIAKNTVK---SVGKFCLEASFNYLKSPNFS 2224 Y F+LL + + ++ A +P I K +VK KF F Y+K Sbjct 1984 YLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVKYNYKALKFFFRLKFQYIKV---- 2039 Query 2225 KLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTG 2284 FL S+ L +L Y+ + + + +G P C Y +GY NST YC G Sbjct 2040 --------FLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYC-G 2087 Query 2285 SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLA 2344 ++ C +CL G + L + I K L L + + I+F FF +G+ Sbjct 2088 NVLCKICLYGYEELSDFTHTRVIW---QHLKDPLIGNILPLFYLVFLIIFGGFFVRIGIT 2144 Query 2345 AIMQLFFSY--FAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVD 2402 + + + A+ + N WL+ L+ P ++M + + + HV+ Sbjct 2145 YFIMQYINAAGVALGYQDNVWLLHLL-------PFNSMGNIIVVAFIVTRILLFLKHVLF 2197 Query 2403 GCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGS 2462 GC+ +C+ C K + TRV TI+ GV +SFYV ANGGK FCK HN+ CV+CD++ G Sbjct 2198 GCDKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGC 2257 Query 2463 TFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFV 2522 TFI+D +A +LS K + PT ++ I+D V NG +LY K + + + Sbjct 2258 TFINDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYA 2317 Query 2523 NLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGD 2582 D L+ N + + +VF+ S + K+A VY+SQL+C+PI L+D AL++ + Sbjct 2318 CKDVLKNCN----ILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASL-- 2370 Query 2583 SAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFV 2642 + + + + A+V S++F + + + R+ Sbjct 2371 NVDFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLG 2408 Query 2643 DSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVE-NMTPRDLGACIDCSARHINA 2701 SDV ++ + +H+ D+ ++ S NN +++Y K E + D+ C+ A+ +N Sbjct 2409 LSDVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNH 2468 Query 2702 QVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALK 2761 V N+ ++W KDF++LSE+ RK I K + F LT R + + T +A K Sbjct 2469 NVLTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANK 2528 Query 2762 GGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIG-----YKAIDGGV 2816 G + + +L + F + LI + V + DFS+++ +K I+ GV Sbjct 2529 KGAGLPSLFTRL------YSFFWHLCVLIVVLFVATSLLDFSAQVTSDTQYDFKYIENGV 2582 Query 2817 TRDIASTDTCFANKHADFDTWFSQRGGSY-TNDKACPLIAAVITREVGFVVPGLPGTILR 2875 + C N +F+ W + + GS TN + CP++ + EV ++ PG+P + Sbjct 2583 LKVFEKPLDCVHNAFVNFNEWHNAKFGSIPTNSRRCPIVVGT-SDEVRYI-PGVPAGVF- 2639 Query 2876 TTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYD 2935 G L F +C+ L + +C+ + CT G+ V YCY Sbjct 2640 -LYGKSLIFAMSTIFGTSGLCFDDRGLTD-----PDSCIFNSACTTLSGIGGRNV-YCYR 2692 Query 2936 TNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSEA 2994 V++ + Y SL P + Y LMDG+ I P G +R + T YCR G C S+A Sbjct 2693 EGVVDNAKLYSSLLPHSYYRLMDGNHIVLPEIITRGFGIRTIKTQAMTYCRTGECIDSQA 2752 Query 2995 GVCVSTSGRWVLNNDYYRSLPG--VFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGI 3052 GVCV +V Y PG CG +LL N+ I +S I+ + Sbjct 2753 GVCVGLDRFFV-----YSKTPGSDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCV 2807 Query 3053 VAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYL 3112 VA + F +F+R FG+ S F L + V L+ V + + + Y L Sbjct 2808 VAFTAVMACFAFTKFKRLFGDMS----FGVLSVGLCTVVNNLSYVVT-QNSIGMLAYATL 2862 Query 3113 TFYLTNDV--SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VF 3167 F T V S++ H+ + + + L P+W+ +AY+IC + F N K +V +F Sbjct 2863 YFLCTKGVRYSWVWHVGFAISYCFLAPWWVVLAYLICALLE----FLPNLFKLKVSTQLF 2918 Query 3168 NGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSY 3226 G F +FE AA TF+L+ Y KL + + + +Y A YN+YKY+SG+ Y Sbjct 2919 EGDKFVGSFESAASGTFVLDMHSYQKLANSI--STEKLKQYCASYNRYKYYSGSASEADY 2976 Query 3227 REAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCG 3286 R A HLAKA++DF+N D LY PP S S LQ+G RKMA PSG VEGC+V+V+ G Sbjct 2977 RLACFAHLAKAMSDFANDHMDKLYTPPTVSYNST-LQAGLRKMAQPSGIVEGCIVRVSYG 3035 Query 3287 TTTLNGLWLDDVVYCPRHVICT-SEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSM 3345 TLNGLWL D V CPRHVI + + ++++ ++ L+R HNF + +GN+ L VI SM Sbjct 3036 NLTLNGLWLGDTVICPRHVIASNTTNVIDYDHAMSLVRL--HNFSISSGNMFLGVISASM 3093 Query 3346 QNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLN 3405 + +L +KV+ +N TP Y + ++PG +F++LACY+GS +GVY MR N+TI+GSF++ Sbjct 3094 RGTLLHIKVNQSNVNTPNYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFIS 3153 Query 3406 GSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITV 3465 G+CGS G+NI+ V FCYMHH+EL +G H G+D++G YG + D+ T Q G +T Sbjct 3154 GACGSPGYNINNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQIEGASNLVTE 3213 Query 3466 NVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVL 3525 NV +WLY A+INGDRW+L+ + ++ +N A++ L +VD L A+TG+ V Sbjct 3214 NVCSWLYGALINGDRWWLSSVSVGVDTYNEWALRNGMTALK--NVDCFSLLVAKTGVDVG 3271 Query 3526 DMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSA-VKRTIKGTHHWLL 3584 + AS+++L N G++ILG L DEFT +VV+Q GVT QS V R + Sbjct 3272 RLLASIQKLHGN-FGGKSILGCTSLCDEFTLSEVVKQMYGVTLQSGKVSRAFRNA----- 3325 Query 3585 LTILTSLLVLVQSTQW--SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLP 3642 +I+ LL L S S F++ P + II S+ M+ VKHK FL L+LLP Sbjct 3326 -SIVCCLLFLFLSEMLNHSKLFWINPGYITPVFLAIIVASSALMLLVKHKLLFLQLYLLP 3384 Query 3643 SLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYD 3702 SL V+ +N ++ + ++ D GF + + + ++ L T R + Sbjct 3385 SLCIVSGYN-IFKDYHFYTYMLEEFDY-KVPFGGFNVTGVLNISLCCFVMGLHTFR--FL 3440 Query 3703 DGARRVWT-LMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFM 3761 ++++ ++ VLT++Y YY + + LI++ S + T F+ + Sbjct 3441 QTPNKIFSYVVAVLTVLYTYYY------STDVLGLILTSMSGF----TNYWFIGTATYKL 3490 Query 3762 CVEYCP--IFFITGNTLQCIMLVYCFLGYFCTC-YFGLFCLLNRYFRLTLGVYDYLVSTQ 3818 P + + ++ ++ +Y LGY C C Y+G +NR+ +LTLG Y++ VS Sbjct 3491 ATYVLPHTSLLDSFDAIKAVVFLYLLLGY-CNCVYYGSLYWINRFCKLTLGCYEFKVSAA 3549 Query 3819 EFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQ 3878 EF+YM + GL P DA L++KL+GVGG+ IK+++VQSK++D+KCT+VVLL L Sbjct 3550 EFKYMVANGLRAPTGVFDALILSLKLIGVGGRKTIKISSVQSKLTDLKCTNVVLLGCLSN 3609 Query 3879 LRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNR 3938 + + ++S+ WA CV LHN I L D A E +++LL+ LS A +++L + ++ Sbjct 3610 MNIAANSREWAYCVDLHNKINLCNDAEAAQEMLLALLAFFLSKNSAFGVDELLDSYFNDS 3669 Query 3939 ATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQ 3998 + LQ++A+ + +LPSY A+ TA+++YE A+ANG ++K+L+ ++NVAKSEFDR+A+ Q Sbjct 3670 SVLQSVAATYVNLPSYLAYETARQSYEDALANGSPPQLVKQLRHAMNVAKSEFDREASTQ 3729 Query 3999 RKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVP 4058 RKL++MA+QA +QMYK+AR+ ++++KV SAM ++LF MLR+LD +++ I++ A+DG VP Sbjct 3730 RKLDRMAEQAASQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILSLAKDGVVP 3789 Query 4059 LNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDN 4118 L+IIP +A KL +V+ D +Y YA +W + + D D K V E+ N Sbjct 3790 LSIIPAVSATKLNIVVSDIESYSKIQREGCVHYAGVIWSVVDIKDNDGKPVHAKEVVTSN 3849 Query 4119 SPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGG 4178 +LAWPL + R +KLQNNE+ P ++Q A + D NAL Y+ G Sbjct 3850 VESLAWPLFLNCER---IIKLQNNEIIPSKIKQRPIKA-EGEGVVADGNAL--YSNEGGR 3903 Query 4179 RFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLN 4238 F+ A +SD DLK ++ G+ I ELEPPC+F+ + P GP VKYLYF++ LNNL Sbjct 3904 TFMYAFISDKPDLKVVKWEFDGGSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLR 3961 Query 4239 RGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKML 4298 RG VLG + ATVRLQAG TE NS++L+ CAFAVD K Y D + SG +P+ NCVKML Sbjct 3962 RGAVLGFIGATVRLQAGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKML 4021 Query 4299 CTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCAN 4358 +G GQAIT EA+ +Q+S+GGAS CLYCR H++HP+ GFC L+GKYVQ+P Sbjct 4022 ANGSGNGQAITNGVEASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL- 4080 Query 4359 DPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 DP+ F L+NTVC VCG W+ GC+CD+ ++QS D+ +LN Sbjct 4081 DPIRFVLENTVCKVCGCWQANGCTCDR---AVIQSVDS-GYLN 4119 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/204 (32%), Positives = 94/204 (46%), Gaps = 16/204 (8%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 1116 VVNAAN L HGGG+A AL+ T +QV S+ Y++ NG +KVG ++ L+ Sbjct 1323 VVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE--HSILN 1380 Query 1117 VVGPNVNKGEDIQLLKSAYE-NFNQHEVLLAPLLSAGIFGADPIHSLR---VCVDTVRTN 1172 VVGP K +LL AY F Q V L PLLS GIF SL CV Sbjct 1381 VVGPRKGK-HAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGDRVCK 1439 Query 1173 VYLAVFDKNL-YDKLVSSFLEMKSEKQVE-----QKIAEIPKEEVKPFITESKPSVEQRK 1226 + + L V+SF ++E+ VE Q++ + E+ P + P R Sbjct 1440 CFCYTDKERLAIQNFVTSF---QTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPCEPFRI 1496 Query 1227 QDDKKIKACVEEVTTTLEETKFLT 1250 + D K + +L+ T+ ++ Sbjct 1497 EGDAKFYDLTPSMVQSLQVTRLVS 1520 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/196 (27%), Positives = 83/196 (42%), Gaps = 12/196 (6%) Query 1561 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 +L E + ++V T D + HT + S TYGQQ G ++ VT +KP + + + V Sbjct 1634 TLFEAKPVQVVVTQDQRSFHTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDKVVS--V 1691 Query 1621 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATA 1679 +PN V+ ++Y D L+HT + VNG ++ +DNNC++ Sbjct 1692 VPN-----VDWDKHYGFVDAGIF----HTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAV 1742 Query 1680 LLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 1739 L LQ KF P LQ + G+ A F + GE D T++ + + Sbjct 1743 CLQLQFANAKFKPKGLQQLWESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFL 1802 Query 1740 NLDSCKRVLNVVCKTC 1755 +L TC Sbjct 1803 KPQGSVEMLRATSTTC 1818 >sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust. Identities = 792/2268 (35%), Positives = 1219/2268 (54%), Gaps = 169/2268 (7%) Query 2171 YFFTLLLQLCTFTRSTNSRIKASMPT---TIAKNTVK---SVGKFCLEASFNYLKSPNFS 2224 Y F+LL + + ++ A +P I K +VK KF F Y+K Sbjct 1984 YLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVKYNYKALKFFFRLKFQYIKV---- 2039 Query 2225 KLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTG 2284 FL S+ L +L Y+ + + + +G P C Y +GY NST YC G Sbjct 2040 --------FLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYC-G 2087 Query 2285 SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLA 2344 ++ C +CL G + L + I K L L + + I+F FF +G+ Sbjct 2088 NVLCKICLYGYEELSDFTHTRVIW---QHLKDPLIGNILPLFYLVFLIIFGGFFVRIGIT 2144 Query 2345 AIMQLFFSY--FAVHFISNSWLMWLII-----NLVQMAPISAMVRMYIFFASFYYVWKSY 2397 + + + A+ + N WL+ L+ N++ +A I + R+ +F Sbjct 2145 YFIMQYINAAGVALGYQDNVWLLHLLPFNSMGNIIVVAFI--VTRILLFLK--------- 2193 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 HV+ GC+ +C+ C K + TRV TI+ GV +SFYV ANGGK FCK HN+ CV+CD+ Sbjct 2194 -HVLFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDS 2252 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 2517 + G TFI+D +A +LS K + PT ++ I+D V NG +LY K + Sbjct 2253 YGYGCTFINDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDIT 2312 Query 2518 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV 2577 + + D L+ N + + +VF+ S + K+A VY+SQL+C+PI L+D AL+ Sbjct 2313 EAKYACKDVLKNCN----ILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALL 2367 Query 2578 SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAA 2637 + + + + + + A+V S++F + + + Sbjct 2368 ASL--NVDFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NEC 2403 Query 2638 RQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVE-NMTPRDLGACIDCSA 2696 R+ SDV ++ + +H+ D+ ++ S NN +++Y K E + D+ C+ A Sbjct 2404 RESLGLSDVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGA 2463 Query 2697 RHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTT 2756 + +N V N+ ++W KDF++LSE+ RK I K + F LT R + + T Sbjct 2464 KVVNHNVLTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTI 2523 Query 2757 KIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIG-----YKA 2811 +A K G + + +L + F + LI + V + DFS+++ +K Sbjct 2524 SVANKKGAGLPSLFTRL------YSFFWHLCVLIVVLFVATSLLDFSAQVTSDTQYDFKY 2577 Query 2812 IDGGVTRDIASTDTCFANKHADFDTWFSQRGGSY-TNDKACPLIAAVITREVGFVVPGLP 2870 I+ GV + C N +F+ W + + GS TN + CP++ + EV ++ PG+P Sbjct 2578 IENGVLKVFEKPLDCVHNAFVNFNEWHNAKFGSIPTNSRRCPIVVGT-SDEVRYI-PGVP 2635 Query 2871 GTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPV 2930 + G L F +C+ L + +C+ + CT G+ V Sbjct 2636 AGVF--LYGKSLIFAMSTIFGTSGLCFDDRGLTD-----PDSCIFNSACTTLSGIGGRNV 2688 Query 2931 PYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTC 2989 YCY V++ + Y SL P + Y LMDG+ I P G +R + T YCR G C Sbjct 2689 -YCYREGVVDNAKLYSSLLPHSYYRLMDGNHIVLPEIITRGFGIRTIKTQAMTYCRTGEC 2747 Query 2990 ERSEAGVCVSTSGRWVLNNDYYRSLPG--VFCGVDAVNLLTNMFTPLIQPIGALDISASI 3047 S+AGVCV +V Y PG CG +LL N+ I +S I Sbjct 2748 IDSQAGVCVGLDRFFV-----YSKTPGSDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQI 2802 Query 3048 VAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSV 3107 + +VA + F +F+R FG+ S F L + V L+ V + + + Sbjct 2803 LLNCVVAFTAVMACFAFTKFKRLFGDMS----FGVLSVGLCTVVNNLSYVVT-QNSIGML 2857 Query 3108 IYLYLTFYLTNDV--SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV 3165 Y L F T V S++ H+ + + + L P+W+ +AY+IC + F N K +V Sbjct 2858 AYATLYFLCTKGVRYSWVWHVGFAISYCFLAPWWVVLAYLICALLE----FLPNLFKLKV 2913 Query 3166 ---VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAM 3221 +F G F +FE AA TF+L+ Y KL + + + +Y A YN+YKY+SG+ Sbjct 2914 STQLFEGDKFVGSFESAASGTFVLDMHSYQKLANSI--STEKLKQYCASYNRYKYYSGSA 2971 Query 3222 DTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMV 3281 YR A HLAKA++DF+N D LY PP S S LQ+G RKMA PSG VEGC+V Sbjct 2972 SEADYRLACFAHLAKAMSDFANDHMDKLYTPPTVSYNST-LQAGLRKMAQPSGIVEGCIV 3030 Query 3282 QVTCGTTTLNGLWLDDVVYCPRHVICT-SEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRV 3340 +V+ G TLNGLWL D V CPRHVI + + ++++ ++ L+R HNF + +GN+ L V Sbjct 3031 RVSYGNLTLNGLWLGDTVICPRHVIASNTTNVIDYDHAMSLVRL--HNFSISSGNMFLGV 3088 Query 3341 IGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIK 3400 I SM+ +L +KV+ +N TP Y + ++PG +F++LACY+GS +GVY MR N+TI+ Sbjct 3089 ISASMRGTLLHIKVNQSNVNTPNYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIR 3148 Query 3401 GSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTD 3460 GSF++G+CGS G+NI+ V FCYMHH+EL +G H G+D++G YG + D+ T Q G Sbjct 3149 GSFISGACGSPGYNINNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQIEGAS 3208 Query 3461 TTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQT 3520 +T NV +WLY A+INGDRW+L+ + ++ +N A++ L +VD L A+T Sbjct 3209 NLVTENVCSWLYGALINGDRWWLSSVSVGVDTYNEWALRNGMTALK--NVDCFSLLVAKT 3266 Query 3521 GIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSA-VKRTIKGT 3579 G+ V + AS+++L N G++ILG L DEFT +VV+Q GVT QS V R + Sbjct 3267 GVDVGRLLASIQKLHGN-FGGKSILGCTSLCDEFTLSEVVKQMYGVTLQSGKVSRAFRNA 3325 Query 3580 HHWLLLTILTSLLVLVQSTQW--SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLC 3637 +I+ LL L S S F++ P + II S+ M+ VKHK FL Sbjct 3326 ------SIVCCLLFLFLSEMLNHSKLFWINPGYITPVFLAIIVASSALMLLVKHKLLFLQ 3379 Query 3638 LFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTA 3697 L+LLPSL V+ +N ++ + ++ D GF + + + ++ L T Sbjct 3380 LYLLPSLCIVSGYN-IFKDYHFYTYMLEEFDY-KVPFGGFNVTGVLNISLCCFVMGLHTF 3437 Query 3698 RTVYDDGARRVWT-LMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLAR 3756 R + ++++ ++ VLT++Y YY + + LI++ S + T F+ Sbjct 3438 R--FLQTPNKIFSYVVAVLTVLYTYYY------STDVLGLILTSMSGF----TNYWFIGT 3485 Query 3757 GIVFMCVEYCP--IFFITGNTLQCIMLVYCFLGYFCTC-YFGLFCLLNRYFRLTLGVYDY 3813 + P + + ++ ++ +Y LGY C C Y+G +NR+ +LTLG Y++ Sbjct 3486 ATYKLATYVLPHTSLLDSFDAIKAVVFLYLLLGY-CNCVYYGSLYWINRFCKLTLGCYEF 3544 Query 3814 LVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLL 3873 VS EF+YM + GL P DA L++KL+GVGG+ IK+++VQSK++D+KCT+VVLL Sbjct 3545 KVSAAEFKYMVANGLRAPTGVFDALILSLKLIGVGGRKTIKISSVQSKLTDLKCTNVVLL 3604 Query 3874 SVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEE 3933 L + + ++S+ WA CV LHN I L D A E +++LL+ LS A +++L + Sbjct 3605 GCLSNMNIAANSREWAYCVDLHNKINLCNDAEAAQEMLLALLAFFLSKNSAFGVDELLDS 3664 Query 3934 MLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDR 3993 ++ + LQ++A+ + +LPSY A+ TA+++YE A+ANG ++K+L+ ++NVAKSEFDR Sbjct 3665 YFNDSSVLQSVAATYVNLPSYLAYETARQSYEDALANGSPPQLVKQLRHAMNVAKSEFDR 3724 Query 3994 DAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNAR 4053 +A+ QRKL++MA+QA +QMYK+AR+ ++++KV SAM ++LF MLR+LD +++ I++ A+ Sbjct 3725 EASTQRKLDRMAEQAASQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILSLAK 3784 Query 4054 DGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSE 4113 DG VPL+IIP +A KL +V+ D +Y YA +W + + D D K V E Sbjct 3785 DGVVPLSIIPAVSATKLNIVVSDIESYSKIQREGCVHYAGVIWSVVDIKDNDGKPVHAKE 3844 Query 4114 ISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN 4173 + N +LAWPL + R +KLQNNE+ P ++Q A + D NAL Y+ Sbjct 3845 VVTSNVESLAWPLFLNCER---IIKLQNNEIIPSKIKQRPIKA-EGEGVVADGNAL--YS 3898 Query 4174 TTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKG 4233 G F+ A +SD DLK ++ G+ I ELEPPC+F+ + P GP VKYLYF++ Sbjct 3899 NEGGRTFMYAFISDKPDLKVVKWEFDGGSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRN 3956 Query 4234 LNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITN 4293 LNNL RG VLG + ATVRLQAG TE NS++L+ CAFAVD K Y D + SG +P+ N Sbjct 3957 LNNLRRGAVLGFIGATVRLQAGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGN 4016 Query 4294 CVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP 4353 CVKML +G GQAIT EA+ +Q+S+GGAS CLYCR H++HP+ GFC L+GKYVQ+P Sbjct 4017 CVKMLANGSGNGQAITNGVEASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVP 4076 Query 4354 TTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 DP+ F L+NTVC VCG W+ GC+CD+ ++QS D+ +LN Sbjct 4077 LGTL-DPIRFVLENTVCKVCGCWQANGCTCDR---AVIQSVDS-GYLN 4119 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/209 (32%), Positives = 95/209 (45%), Gaps = 16/209 (8%) Query 1052 VKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA 1111 V VVNAAN L HGGG+A AL+ T +QV S+ Y++ NG +KVG ++ Sbjct 1318 VNHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE-- 1375 Query 1112 KHCLHVVGPNVNKGEDIQLLKSAYE-NFNQHEVLLAPLLSAGIFGADPIHSLR---VCVD 1167 L+VVGP K +LL AY F Q V L PLLS GIF SL CV Sbjct 1376 HSILNVVGPRKGK-HAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVG 1434 Query 1168 TVRTNVYLAVFDKNL-YDKLVSSFLEMKSEKQVE-----QKIAEIPKEEVKPFITESKPS 1221 + + L V+SF ++E+ VE Q++ + E+ P + P Sbjct 1435 DRVCKCFCYTDKERLAIQNFVTSF---QTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPC 1491 Query 1222 VEQRKQDDKKIKACVEEVTTTLEETKFLT 1250 R + D K + +L+ T+ ++ Sbjct 1492 EPFRIEGDAKFYDLTPSMVQSLQVTRLVS 1520 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 12/206 (6%) Query 1561 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 +L E + ++V T D + HT + S TYGQQ G ++ VT +KP + + + V Sbjct 1634 TLFEAKPVQVVVTQDQRSFHTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDKVVS--V 1691 Query 1621 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATA 1679 +PN V+ ++Y D L+HT + VNG ++ +DNNC++ Sbjct 1692 VPN-----VDWDKHYGFVDAGIF----HTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAV 1742 Query 1680 LLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHA 1739 L LQ KF P LQ + G+ A F + GE D T++ + + Sbjct 1743 CLQLQFANAKFKPKGLQQLWESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFL 1802 Query 1740 NLDSCKRVLNVVCKTCGQQQTTLKGV 1765 +L TC +T + V Sbjct 1803 KPQGSVEMLRATSTTCDGTCSTKRVV 1828 >sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus NL63 OX=277944 GN=1a PE=1 SV=1 Length=4060 Score = 1192 bits (3085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 771/2183 (35%), Positives = 1161/2183 (53%), Gaps = 174/2183 (8%) Query 2263 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS-FKWDLTAF 2321 C GY ST YC S+ C +CL + + I L F Sbjct 1999 CGDIVSGYEKST-FNKDIYCGNSMVCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPF 2057 Query 2322 GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMV 2381 ++ + ++ RF + +A + F S+ H W + P + Sbjct 2058 VILVILLIFGNMYLRFGLLYFVAQFISTFGSFLGFH--QKQWFL-------HFVPFDVLC 2108 Query 2382 RMYIFFASFYYVWKSYV---HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 2438 F A+F V K + H++ GCN++ C+ C K R RV TI+NG+ +SFYV A Sbjct 2109 NE--FLATFI-VCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNA 2165 Query 2439 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 2498 NGG FC HN+ CVNCD+F G+TFI+ ++AR+L K + PT + I+D V N Sbjct 2166 NGGTCFCNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVN 2225 Query 2499 GSIHLY---------FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 2549 G LY FD K + L + L+N N GS N+ Sbjct 2226 GFYRLYSGDTFWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGS---NI--------- 2273 Query 2550 EESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKL 2609 + K+A VY+SQL+C+PI L++ L+S + S + + AYV+ ++F Sbjct 2274 --TQIKNACVYFSQLLCEPIKLVNSELLSTL--SVDFNGVLHKAYVDVLCNSF------- 2322 Query 2610 KTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDS 2669 EL N+S+ +T G SD D V + +H+ D+ ++ S Sbjct 2323 -------FKELTANMSMAECKATL------GLTVSD---DDFVSAVANAHRYDVLLSDLS 2366 Query 2670 CNNYMLTYNKVEN-MTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQ 2728 NN+ ++Y K E+ ++ D+ C+ ++ +N V +I ++W VKDF +LS++ +K Sbjct 2367 FNNFFISYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKY 2426 Query 2729 IRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG---KIVNNWLKQLIKVTLVFLFVAA 2785 + K L F LT + + V T I K G K N+L V LFV A Sbjct 2427 LVKTTKAKGLTFLLTFNDNQAITQVPATSIVAKQGAGFKRTYNFL------WYVCLFVVA 2480 Query 2786 IFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSY 2845 +F ++ + + T F +K I+ G + + C N +F+ W + G Sbjct 2481 LFIGVSFIDYTTTVTSFHG--YDFKYIENGQLKVFEAPLHCVRNVFDNFNQWHEAKFGVV 2538 Query 2846 T-NDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGN--ICYTPSKL 2902 T N CP++ V R VVPG+P + G L F + +A GN +CY Sbjct 2539 TTNSDKCPIVVGVSERIN--VVPGVPTNVYLV--GKTLVFTLQ--AAFGNTGVCY----- 2587 Query 2903 IEYTDFATS-ACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSI 2961 ++ TS C+ + CT + G V YCY+T+++EGS Y +L+P+ Y + Sbjct 2588 -DFDGVTTSDKCIFNSACTRLEGLGGDNV-YCYNTDLIEGSKPYSTLQPNAYYKYDAKNY 2645 Query 2962 IQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCG 3020 ++FP G +R + T + YCR G C S GVC +W +N+ R G CG Sbjct 2646 VRFPEILARGFGLRTIRTLATRYCRVGECRDSHKGVCFGFD-KWYVNDG--RVDDGYICG 2702 Query 3021 VDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAF 3080 ++LL N+ + + +S ++ + A +T L + +F+R FG+ S+ V Sbjct 2703 DGLIDLLVNVLSIFSSSFSVVAMSGHMLFNFLFAAFITFLCFLVTKFKRVFGDLSYGV-- 2760 Query 3081 NTLLFLMSFTVLCLTPVYS---------FLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVM 3131 FTV+C T + + F +Y++ LY F T +++ HI ++V Sbjct 2761 --------FTVVCATLINNISYVVTQNLFFMLLYAI--LYFVFTRTVRYAWIWHIAYIVA 2810 Query 3132 FTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFNGVSF-STFEEAALCTFLLNK 3187 + L+P+W+ + S F N K ++ +F G F TFE AA TF+L+ Sbjct 2811 YFLLIPWWLLTWF----SFAAFLELLPNVFKLKISTQLFEGDKFIGTFESAAAGTFVLDM 2866 Query 3188 EMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSD 3247 Y +L + + + Y A YNKYKY+SG+ YR A HLAKA+ D++ +D Sbjct 2867 RSYERLINTI--SPEKLKNYAASYNKYKYYSGSASEADYRCACYAHLAKAMLDYAKDHND 2924 Query 3248 VLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVIC 3307 +LY PP S S LQSG +KMA PSG VE C+V+V G+T LNG+WL D V CPRHVI Sbjct 2925 MLYSPPTISYNST-LQSGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDTVTCPRHVIA 2983 Query 3308 TSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFV 3367 S +L +Y+ HNF V V L V+G +M VL++KV +N TPK+ F Sbjct 2984 PSTTVL-IDYDHAYSTMRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSNVHTPKHVFK 3042 Query 3368 RIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYD-CVSFCYMH 3426 ++PG +F++LACY G SGV+ +R NFTIKGSF+NG+CGS G+N+ D V FCY+H Sbjct 3043 TLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLH 3102 Query 3427 HMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRF 3486 +EL +G H G+D G+ YG F D+ + Q + ++ NV+A+LYAA++NG RW+L Sbjct 3103 QIELGSGAHVGSDFTGSVYGNFDDQPSLQVESANLMLSDNVVAFLYAALLNGCRWWLCST 3162 Query 3487 TTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILG 3546 ++ FN AM Y ++ V+ L+A+TG++V + AS++ L G G+ ILG Sbjct 3163 RVNVDGFNEWAMANGYTSVSS--VECYSILAAKTGVSVEQLLASIQHL-HEGFGGKNILG 3219 Query 3547 SALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFL 3606 + L DEFT +VV+Q GV QS + I G L ++ ++ W+ F + Sbjct 3220 YSSLCDEFTLAEVVKQMYGVNLQSG--KVIFGLKTMFLFSVFFTMF-------WAELF-I 3269 Query 3607 YENA-------FLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASW 3659 Y N P ++ +S MF+KHK FL +FLLP++ A +N V + Sbjct 3270 YTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVL--DYY 3327 Query 3660 VMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVY 3719 +++ + + S+ ++ V + ++ L T R + + +++ + Y Sbjct 3328 IVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAY 3387 Query 3720 KVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCI 3779 +Y + M+ IS + Y G + V L+R IVF E +F + G+ ++ Sbjct 3388 TYFYSGDFLSLLVMFLCAIS-SDWYIGAI--VFRLSRLIVFFSPE--SVFSVFGD-VKLT 3441 Query 3780 MLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFK 3839 ++VY GY Y+G+ NR+F+ T+GVYD+ VS EF+YM + GL P DA Sbjct 3442 LVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALW 3501 Query 3840 LNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDIL 3899 L+ KLLG+GG CIK++TVQSK++D+KCT+VVLL L + + ++S WA CV LHN I Sbjct 3502 LSFKLLGIGGDRCIKISTVQSKLTDLKCTNVVLLGCLSSMNIAANSSEWAYCVDLHNKIN 3561 Query 3900 LAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFAT 3959 L D +A +++LL+ LS ++ L + DN +TLQ++AS F S+PSY A+ Sbjct 3562 LCDDPEKAQSMLLALLAFFLSKHSDFGLDGLIDSYFDNSSTLQSVASSFVSMPSYIAYEN 3621 Query 3960 AQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSE 4019 A++AYE A+ANG S ++K+LK+++N+AKSEFD + ++Q+K+ +MA+QA TQMYK+ARS Sbjct 3622 ARQAYEDAIANGSSSQLIKQLKRAMNIAKSEFDHEISVQKKINRMAEQAATQMYKEARSV 3681 Query 4020 DKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNT 4079 ++++KV SAM ++LF MLR+LD ++ ++N ARDG VPL++IP T+A+KL +V PD + Sbjct 3682 NRKSKVISAMHSLLFGMLRRLDMSSVETVLNLARDGVVPLSVIPATSASKLTIVSPDLES 3741 Query 4080 Y-KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVK 4138 Y K CDG+ YA +W + V D D + V + EI+ +N L WPLI+ R VK Sbjct 3742 YSKIVCDGSV-HYAGVVWTLNDVKDNDGRPVHVKEITKENVETLTWPLILNCER---VVK 3797 Query 4139 LQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPK 4198 LQNNE+ P L+Q A D NAL YNT G F+ A +S+ DLK+ ++ Sbjct 3798 LQNNEIMPGKLKQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWEY 3855 Query 4199 SDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNAT 4258 G TI EL+ PCRF+ +TP GP+VKYLYF+K LN L RG VLG + AT+RLQAG T Sbjct 3856 EGGCNTI--ELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQAGKQT 3913 Query 4259 EVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQ 4318 E+ NS +L+ CAF+VD A Y + + G +P++NC+KML G GQAIT + +AN +Q Sbjct 3914 ELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVDANTNQ 3973 Query 4319 ESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKG 4378 +S+GGAS CLYCR H+ HP+ G+C KGK VQ+P C DP+ F L+N VC VCG W G Sbjct 3974 DSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVCGCWLG 4032 Query 4379 YGCSCDQLREPMLQSADAQSFLN 4401 +GC+CD+ +QS D S+LN Sbjct 4033 HGCACDR---TTIQSVDI-SYLN 4051 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/171 (35%), Positives = 84/171 (49%), Gaps = 9/171 (5%) Query 993 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 1052 G D + +++ T+ V + ++ EV F+ Y NV DI V Sbjct 1228 GVFDIKNSSVNTVCFVDVDFH---SVEIEAGEVKPFAVY----KNVKFYLGDISHLVNCV 1280 Query 1053 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 1112 VVNAAN L HGGGVA A++ T +Q S DYI++NGPLKVG +L Sbjct 1281 SFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLECEKF-- 1338 Query 1113 HCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLR 1163 + +VVGP K E L+++ ++ + L PLLS GIFG +SL+ Sbjct 1339 NVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIENSLK 1389 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/174 (29%), Positives = 72/174 (41%), Gaps = 16/174 (9%) Query 1573 TVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLP-NDDTLRVEA 1631 T D IN+ VV+ S + G+Q G DG D S EG VLP N DT+ A Sbjct 1587 TEDGINVKDVVVESSKSLGKQLGVVS-DGVD--------SFEG----VLPINTDTVLSVA 1633 Query 1632 FEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLTSIKWADNNCYLATALLTLQQIELK 1689 E F + A K + YP V G + DNNC++ + LQ ++ Sbjct 1634 PEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQYLKPT 1693 Query 1690 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS 1743 F L + + G+ F + I + G+ GD E +S L ++ DS Sbjct 1694 FKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDS 1747 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 42/176 (24%), Positives = 72/176 (41%), Gaps = 13/176 (7%) Query 1663 GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTV 1722 G+ + +DNNC+++T L+ LQ +L + +Q + G+ + + Sbjct 1051 GVRVLDQSDNNCWISTTLVQLQLTKLLDDSIEMQ----LFKVGKVDSIVQKCYELSHLIS 1106 Query 1723 GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKG 1782 G LGD + +S L + +C + C CG++ G ++ + F+KG Sbjct 1107 GSLGDSGKLLSELLKEKY--TCSITFEMSCD-CGKKFDDQVG---CLFWIMPYTKLFQKG 1160 Query 1783 VQIPCTCGKQATKYLVQQESPFVMMSAP-PAQYELKHGTFTCASEYTGNYQCGHYK 1837 C C K T LV + V + P P + C+S Y G GHY+ Sbjct 1161 E--CCICHKMQTYKLVSMKGTGVFVQDPAPIDIDAFPVKPICSSVYLGVKGSGHYQ 1214 >sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 1192 bits (3085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 771/2183 (35%), Positives = 1161/2183 (53%), Gaps = 174/2183 (8%) Query 2263 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISS-FKWDLTAF 2321 C GY ST YC S+ C +CL + + I L F Sbjct 1999 CGDIVSGYEKST-FNKDIYCGNSMVCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPF 2057 Query 2322 GLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMV 2381 ++ + ++ RF + +A + F S+ H W + P + Sbjct 2058 VILVILLIFGNMYLRFGLLYFVAQFISTFGSFLGFH--QKQWFL-------HFVPFDVLC 2108 Query 2382 RMYIFFASFYYVWKSYV---HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 2438 F A+F V K + H++ GCN++ C+ C K R RV TI+NG+ +SFYV A Sbjct 2109 NE--FLATFI-VCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNA 2165 Query 2439 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 2498 NGG FC HN+ CVNCD+F G+TFI+ ++AR+L K + PT + I+D V N Sbjct 2166 NGGTCFCNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVN 2225 Query 2499 GSIHLY---------FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 2549 G LY FD K + L + L+N N GS N+ Sbjct 2226 GFYRLYSGDTFWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGS---NI--------- 2273 Query 2550 EESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKL 2609 + K+A VY+SQL+C+PI L++ L+S + S + + AYV+ ++F Sbjct 2274 --TQIKNACVYFSQLLCEPIKLVNSELLSTL--SVDFNGVLHKAYVDVLCNSF------- 2322 Query 2610 KTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDS 2669 EL N+S+ +T G SD D V + +H+ D+ ++ S Sbjct 2323 -------FKELTANMSMAECKATL------GLTVSD---DDFVSAVANAHRYDVLLSDLS 2366 Query 2670 CNNYMLTYNKVEN-MTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQ 2728 NN+ ++Y K E+ ++ D+ C+ ++ +N V +I ++W VKDF +LS++ +K Sbjct 2367 FNNFFISYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKY 2426 Query 2729 IRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGG---KIVNNWLKQLIKVTLVFLFVAA 2785 + K L F LT + + V T I K G K N+L V LFV A Sbjct 2427 LVKTTKAKGLTFLLTFNDNQAITQVPATSIVAKQGAGFKRTYNFL------WYVCLFVVA 2480 Query 2786 IFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSY 2845 +F ++ + + T F +K I+ G + + C N +F+ W + G Sbjct 2481 LFIGVSFIDYTTTVTSFHG--YDFKYIENGQLKVFEAPLHCVRNVFDNFNQWHEAKFGVV 2538 Query 2846 T-NDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGN--ICYTPSKL 2902 T N CP++ V R VVPG+P + G L F + +A GN +CY Sbjct 2539 TTNSDKCPIVVGVSERIN--VVPGVPTNVYLV--GKTLVFTLQ--AAFGNTGVCY----- 2587 Query 2903 IEYTDFATS-ACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSI 2961 ++ TS C+ + CT + G V YCY+T+++EGS Y +L+P+ Y + Sbjct 2588 -DFDGVTTSDKCIFNSACTRLEGLGGDNV-YCYNTDLIEGSKPYSTLQPNAYYKYDAKNY 2645 Query 2962 IQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCG 3020 ++FP G +R + T + YCR G C S GVC +W +N+ R G CG Sbjct 2646 VRFPEILARGFGLRTIRTLATRYCRVGECRDSHKGVCFGFD-KWYVNDG--RVDDGYICG 2702 Query 3021 VDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAF 3080 ++LL N+ + + +S ++ + A +T L + +F+R FG+ S+ V Sbjct 2703 DGLIDLLVNVLSIFSSSFSVVAMSGHMLFNFLFAAFITFLCFLVTKFKRVFGDLSYGV-- 2760 Query 3081 NTLLFLMSFTVLCLTPVYS---------FLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVM 3131 FTV+C T + + F +Y++ LY F T +++ HI ++V Sbjct 2761 --------FTVVCATLINNISYVVTQNLFFMLLYAI--LYFVFTRTVRYAWIWHIAYIVA 2810 Query 3132 FTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFNGVSF-STFEEAALCTFLLNK 3187 + L+P+W+ + S F N K ++ +F G F TFE AA TF+L+ Sbjct 2811 YFLLIPWWLLTWF----SFAAFLELLPNVFKLKISTQLFEGDKFIGTFESAAAGTFVLDM 2866 Query 3188 EMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSD 3247 Y +L + + + Y A YNKYKY+SG+ YR A HLAKA+ D++ +D Sbjct 2867 RSYERLINTI--SPEKLKNYAASYNKYKYYSGSASEADYRCACYAHLAKAMLDYAKDHND 2924 Query 3248 VLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVIC 3307 +LY PP S S LQSG +KMA PSG VE C+V+V G+T LNG+WL D V CPRHVI Sbjct 2925 MLYSPPTISYNST-LQSGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDTVTCPRHVIA 2983 Query 3308 TSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFV 3367 S +L +Y+ HNF V V L V+G +M VL++KV +N TPK+ F Sbjct 2984 PSTTVL-IDYDHAYSTMRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSNVHTPKHVFK 3042 Query 3368 RIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYD-CVSFCYMH 3426 ++PG +F++LACY G SGV+ +R NFTIKGSF+NG+CGS G+N+ D V FCY+H Sbjct 3043 TLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLH 3102 Query 3427 HMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRF 3486 +EL +G H G+D G+ YG F D+ + Q + ++ NV+A+LYAA++NG RW+L Sbjct 3103 QIELGSGAHVGSDFTGSVYGNFDDQPSLQVESANLMLSDNVVAFLYAALLNGCRWWLCST 3162 Query 3487 TTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILG 3546 ++ FN AM Y ++ V+ L+A+TG++V + AS++ L G G+ ILG Sbjct 3163 RVNVDGFNEWAMANGYTSVSS--VECYSILAAKTGVSVEQLLASIQHL-HEGFGGKNILG 3219 Query 3547 SALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFL 3606 + L DEFT +VV+Q GV QS + I G L ++ ++ W+ F + Sbjct 3220 YSSLCDEFTLAEVVKQMYGVNLQSG--KVIFGLKTMFLFSVFFTMF-------WAELF-I 3269 Query 3607 YENA-------FLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASW 3659 Y N P ++ +S MF+KHK FL +FLLP++ A +N V + Sbjct 3270 YTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVL--DYY 3327 Query 3660 VMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVY 3719 +++ + + S+ ++ V + ++ L T R + + +++ + Y Sbjct 3328 IVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAY 3387 Query 3720 KVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCI 3779 +Y + M+ IS + Y G + V L+R IVF E +F + G+ ++ Sbjct 3388 TYFYSGDFLSLLVMFLCAIS-SDWYIGAI--VFRLSRLIVFFSPE--SVFSVFGD-VKLT 3441 Query 3780 MLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFK 3839 ++VY GY Y+G+ NR+F+ T+GVYD+ VS EF+YM + GL P DA Sbjct 3442 LVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALW 3501 Query 3840 LNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDIL 3899 L+ KLLG+GG CIK++TVQSK++D+KCT+VVLL L + + ++S WA CV LHN I Sbjct 3502 LSFKLLGIGGDRCIKISTVQSKLTDLKCTNVVLLGCLSSMNIAANSSEWAYCVDLHNKIN 3561 Query 3900 LAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFAT 3959 L D +A +++LL+ LS ++ L + DN +TLQ++AS F S+PSY A+ Sbjct 3562 LCDDPEKAQSMLLALLAFFLSKHSDFGLDGLIDSYFDNSSTLQSVASSFVSMPSYIAYEN 3621 Query 3960 AQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSE 4019 A++AYE A+ANG S ++K+LK+++N+AKSEFD + ++Q+K+ +MA+QA TQMYK+ARS Sbjct 3622 ARQAYEDAIANGSSSQLIKQLKRAMNIAKSEFDHEISVQKKINRMAEQAATQMYKEARSV 3681 Query 4020 DKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNT 4079 ++++KV SAM ++LF MLR+LD ++ ++N ARDG VPL++IP T+A+KL +V PD + Sbjct 3682 NRKSKVISAMHSLLFGMLRRLDMSSVETVLNLARDGVVPLSVIPATSASKLTIVSPDLES 3741 Query 4080 Y-KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVK 4138 Y K CDG+ YA +W + V D D + V + EI+ +N L WPLI+ R VK Sbjct 3742 YSKIVCDGSV-HYAGVVWTLNDVKDNDGRPVHVKEITKENVETLTWPLILNCER---VVK 3797 Query 4139 LQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPK 4198 LQNNE+ P L+Q A D NAL YNT G F+ A +S+ DLK+ ++ Sbjct 3798 LQNNEIMPGKLKQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWEY 3855 Query 4199 SDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNAT 4258 G TI EL+ PCRF+ +TP GP+VKYLYF+K LN L RG VLG + AT+RLQAG T Sbjct 3856 EGGCNTI--ELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQAGKQT 3913 Query 4259 EVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQ 4318 E+ NS +L+ CAF+VD A Y + + G +P++NC+KML G GQAIT + +AN +Q Sbjct 3914 ELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVDANTNQ 3973 Query 4319 ESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKG 4378 +S+GGAS CLYCR H+ HP+ G+C KGK VQ+P C DP+ F L+N VC VCG W G Sbjct 3974 DSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVCGCWLG 4032 Query 4379 YGCSCDQLREPMLQSADAQSFLN 4401 +GC+CD+ +QS D S+LN Sbjct 4033 HGCACDR---TTIQSVDI-SYLN 4051 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/171 (35%), Positives = 84/171 (49%), Gaps = 9/171 (5%) Query 993 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 1052 G D + +++ T+ V + ++ EV F+ Y NV DI V Sbjct 1228 GVFDIKNSSVNTVCFVDVDFH---SVEIEAGEVKPFAVY----KNVKFYLGDISHLVNCV 1280 Query 1053 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 1112 VVNAAN L HGGGVA A++ T +Q S DYI++NGPLKVG +L Sbjct 1281 SFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLECEKF-- 1338 Query 1113 HCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLR 1163 + +VVGP K E L+++ ++ + L PLLS GIFG +SL+ Sbjct 1339 NVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIENSLK 1389 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/174 (29%), Positives = 72/174 (41%), Gaps = 16/174 (9%) Query 1573 TVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLP-NDDTLRVEA 1631 T D IN+ VV+ S + G+Q G DG D S EG VLP N DT+ A Sbjct 1587 TEDGINVKDVVVESSKSLGKQLG-VVSDGVD--------SFEG----VLPINTDTVLSVA 1633 Query 1632 FEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLTSIKWADNNCYLATALLTLQQIELK 1689 E F + A K + YP V G + DNNC++ + LQ ++ Sbjct 1634 PEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQYLKPT 1693 Query 1690 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS 1743 F L + + G+ F + I + G+ GD E +S L ++ DS Sbjct 1694 FKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDS 1747 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 42/176 (24%), Positives = 72/176 (41%), Gaps = 13/176 (7%) Query 1663 GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTV 1722 G+ + +DNNC+++T L+ LQ +L + +Q + G+ + + Sbjct 1051 GVRVLDQSDNNCWISTTLVQLQLTKLLDDSIEMQ----LFKVGKVDSIVQKCYELSHLIS 1106 Query 1723 GELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKG 1782 G LGD + +S L + +C + C CG++ G ++ + F+KG Sbjct 1107 GSLGDSGKLLSELLKEKY--TCSITFEMSCD-CGKKFDDQVG---CLFWIMPYTKLFQKG 1160 Query 1783 VQIPCTCGKQATKYLVQQESPFVMMSAP-PAQYELKHGTFTCASEYTGNYQCGHYK 1837 C C K T LV + V + P P + C+S Y G GHY+ Sbjct 1161 E--CCICHKMQTYKLVSMKGTGVFVQDPAPIDIDAFPVKPICSSVYLGVKGSGHYQ 1214 >sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1 Length=4117 Score = 1189 bits (3075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 757/2212 (34%), Positives = 1174/2212 (53%), Gaps = 157/2212 (7%) Query 2230 IIWFLLLS-VCLG-SLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIP 2287 + WF +L LG +Y+ + + + +G P C GY NS+ YC S+ Sbjct 2020 LYWFKVLGKFSLGIYALYALLFMTIRFTPIGSP-VCDDVVAGYANSS-FDKNEYCN-SVI 2076 Query 2288 CSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIM 2347 C VCL G L + + + W L+ FFY+ LA Sbjct 2077 CKVCLYGYQELSDFSHTQVV--------WQHLRDPLIGN-------VMPFFYLAFLAIFG 2121 Query 2348 QLFFSYFAVHFIS---NSWLMWL----IINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 ++ ++FI NS ++L I +Q+ P + F V HV Sbjct 2122 GVYVKAITLYFIFQYLNSLGVFLGLQQSIWFLQLVPFDVFGDEIVVFFIVTRVLMFIKHV 2181 Query 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 GC+ ++C+ C K R RV TI G +SFYV+ANGG FCK HN+ C+NCD++ Sbjct 2182 CLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGP 2241 Query 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 G TFI+D +A ++ K + PT ++ ++D V NG +LY K + S Sbjct 2242 GCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDITDSK 2301 Query 2521 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 + + L+ S+ + IVF+ + K+A VY+SQ++C+P+ L+D AL++ + Sbjct 2302 YTCKEALK----NCSIITDFIVFNNNGS-NVNQVKNACVYFSQMLCKPVKLVDSALLASL 2356 Query 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV-LSTFISAARQ 2639 S + + A+V+ S++F + + + + D+V L TF +A + Sbjct 2357 --SVDFGASLHSAFVSVLSNSFGKDLSSCNDM-----QDCKSTLGFDDVPLDTFNAAVAE 2409 Query 2640 GFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTP-RDLGACIDCSARH 2698 +H+ D+ +T S NN+ +Y K E P D+ C+ A+ Sbjct 2410 ------------------AHRYDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKI 2451 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 +N V +I ++W V+DF++LSE+ RK I K + F LT R + T I Sbjct 2452 VNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCI 2511 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEI-----IGYKAID 2813 A K G + ++ K + LF+ A F+ ++ DFS+++ +K I+ Sbjct 2512 ANKKGAGLPSFSKVKKFFWFLCLFIVAAFFALS-------FLDFSTQVSSDSDYDFKYIE 2564 Query 2814 GGVTRDIASTDTCFANKHADFDTWFSQRGG-SYTNDKACPLIAAVITREVGFVVPGLPGT 2872 G + + +C N +FD W + G + N+ +CP++ V + VPG+P Sbjct 2565 SGQLKTFDNPLSCVHNVFINFDQWHDAKFGFTPVNNPSCPIVVGV--SDEARTVPGIPAG 2622 Query 2873 ILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPY 2932 + G L F +C+ S + + AC+ + CT G V Y Sbjct 2623 VYLA--GKTLVFAINTIFGTSGLCFDASGVAD-----KGACIFNSACTTLSGLGGTAV-Y 2674 Query 2933 CYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCER 2991 CY ++EG+ Y L P + Y ++DG+ + P G +R + T YCR G C + Sbjct 2675 CYKNGLVEGAKLYSELAPHSYYKMVDGNAVSLPEIISRGFGIRTIRTKAMTYCRVGQCVQ 2734 Query 2992 SEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGG 3051 S GVC +V N + S CG LL N+ + + + +S I+ Sbjct 2735 SAEGVCFGADRFFVYNAE---SGSDFVCGTGLFTLLMNVISVFSKTVPVTVLSGQILFNC 2791 Query 3052 IVAIVVTCLAYYFMRFRRAFGEYS---HVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVI 3108 I+A V + + F +F+R FG+ S V TLL +S+ V T + + Sbjct 2792 IIAFVAVAVCFLFTKFKRMFGDMSVGVFTVGACTLLNNVSYIVTQNT--------LGMLG 2843 Query 3109 YLYLTFYLTNDVSFLA--HIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV- 3165 Y L F T V ++ H+ +++ + + P+W+ + Y + + F N K +V Sbjct 2844 YATLYFLCTKGVRYMWIWHLGFLISYILIAPWWVLMVY----AFSAIFEFMPNLFKLKVS 2899 Query 3166 --VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMD 3222 +F G F +FE AA TF+L+ Y +L + + + +Y + YNKYKY+SG+ Sbjct 2900 TQLFEGDKFVGSFENAAAGTFVLDMHAYERLANSI--STEKLRQYASTYNKYKYYSGSAS 2957 Query 3223 TTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQ 3282 YR A HLAKA+ D++++ +D LY PP S S LQ+G RKMA PSG VE C+V+ Sbjct 2958 EADYRLACFAHLAKAMMDYASNHNDTLYTPPTVSYNST-LQAGLRKMAQPSGVVEKCIVR 3016 Query 3283 VTCGTTTLNGLWLDDVVYCPRHVICTSE-DMLNPNYEDLLIRKSNHNFLVQAGNVQLRVI 3341 V G LNGLWL D+V CPRHVI +S ++ +Y ++R HNF + +GNV L V+ Sbjct 3017 VCYGNMALNGLWLGDIVMCPRHVIASSTTSTIDYDYALSVLRL--HNFSISSGNVFLGVV 3074 Query 3342 GHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKG 3401 +M+ +L++KV+ N TPKY + ++PG++F++LACY+G+ +GVY MR N+TI+G Sbjct 3075 SATMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRG 3134 Query 3402 SFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDT 3461 SF+NG+CGS G+NI+ V FCY+H +EL +G H G+DL+G YG + D+ T Q G + Sbjct 3135 SFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASS 3194 Query 3462 TITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTG 3521 T NVLA+LYAA+ING W+L+ ++ FN A+ T + D L+A+TG Sbjct 3195 LFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMT--TVGNTDCFSILAAKTG 3252 Query 3522 IAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSA-VKRTIKGTH 3580 + V + AS++ L +N G+ ILG L DEFT +VVRQ GV Q V R + Sbjct 3253 VDVQRLLASIQSLHKN-FGGKQILGHTSLTDEFTTGEVVRQMYGVNLQGGYVSRACRN-- 3309 Query 3581 HWLLLTILTSLLVLVQS--TQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCL 3638 + ++ S L S ++ FF++ P + +S+ M +KHK F + Sbjct 3310 ----VLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQV 3365 Query 3639 FLLPSLATVAYFNMVYMPASWVMRIMTWL-DMVD--TSLSGFKLKDCVMYASAVVLLILM 3695 FL+P+L + N+ + + + +L + D SL GF + V V+ IL Sbjct 3366 FLIPALIVTSCINLAFD-----VEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILH 3420 Query 3696 TART--VYDDGARRVWTLMNVLTLVYKVYYG-NALDQAISMWALIISVTSNYSGVVTTVM 3752 T ++ A V ++ +LT Y +Y + L A++++A SVT N+ V V Sbjct 3421 GTYTWRFFNTPASSVTYVVALLTAAYNYFYASDILSCAMTLFA---SVTGNW--FVGAVC 3475 Query 3753 FLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYD 3812 + + V+M + + P F ++ +M Y LGYF C++G+ NR+F++++GVYD Sbjct 3476 Y--KVAVYMALRF-PTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYD 3532 Query 3813 YLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVL 3872 Y VS EF+YM + GL P ++D+ L+ KL+G+GG+ IK+++VQSK++D+KC++VVL Sbjct 3533 YTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQSKLTDIKCSNVVL 3592 Query 3873 LSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCE 3932 L L + V ++S WA CV LHN I L D +A E +++LL+ LS A ++ L E Sbjct 3593 LGCLSSMNVSANSTEWAYCVDLHNKINLCNDPEKAQEMLLALLAFFLSKNSAFGLDDLLE 3652 Query 3933 EMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFD 3992 ++ + LQ++AS + LPSY + A++ YE AV NG ++K+L+ ++NVAKSEFD Sbjct 3653 SYFNDNSMLQSVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFD 3712 Query 3993 RDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNA 4052 R+A+ QRKL++MA+QA QMYK+AR+ ++++KV SAM ++LF MLR+LD +++ I+N A Sbjct 3713 REASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLA 3772 Query 4053 RDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLS 4112 +DG VPL++IP +A KL +V D ++Y YA +W I + D D K+V + Sbjct 3773 KDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVK 3832 Query 4113 EISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYY 4172 E++ N+ +L+WPL++ R VKLQNNE+ P L+Q S A A Y Sbjct 3833 EVTAQNAESLSWPLVLGCER---IVKLQNNEIIPGKLKQRSIKAEGDGIV---GEGKALY 3886 Query 4173 NTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIK 4232 N G F+ A +SD DL+ ++ G TI ELEPP +F+ D+P G ++KYLYF++ Sbjct 3887 NNEGGRTFMYAFISDKPDLRVVKWEFDGGCNTI--ELEPPRKFLVDSPNGAQIKYLYFVR 3944 Query 4233 GLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPIT 4292 LN L RG VLG + ATVRLQAG TE NS++L+ CAFAVD AK Y D + SG +P+ Sbjct 3945 NLNTLRRGAVLGYIGATVRLQAGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVG 4004 Query 4293 NCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQI 4352 NCVKML +G GQA+T EA+ +Q+S+GGAS CLYCR H++HP+ GFC LKGKYVQ+ Sbjct 4005 NCVKMLANGSGNGQAVTNGVEASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQV 4064 Query 4353 PTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFA 4404 P DP+ F L+N VC VCG W GC+CD+ ++QS D ++LN + Sbjct 4065 PLGTV-DPIRFVLENDVCKVCGCWLSNGCTCDR---SIMQSTD-MAYLNEYG 4111 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/165 (34%), Positives = 74/165 (45%), Gaps = 10/165 (6%) Query 993 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIE---VNSFSGYLKLTDNVYIKNADIVEEA 1049 G + T+ TI L P V ++ V F Y NV D + Sbjct 1255 GRHQIKYDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSY----KNVDFYQGDF-SDL 1309 Query 1050 KKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHN 1109 K+ VVNAAN L HGGG+A A++ T +Q S+DYI +GP+KVG +L Sbjct 1310 VKLPCDFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA-- 1367 Query 1110 LAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIF 1154 L +VVGP K L+K+ F V L PL+S GIF Sbjct 1368 LGLKVFNVVGPRKGKHAPELLVKAYKSVFANSGVALTPLISVGIF 1412 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 85/344 (25%), Positives = 138/344 (40%), Gaps = 38/344 (11%) Query 1548 GEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKI 1607 G V T D+++ + + V IKV T D ++ V+ + TYGQQ GP ++ VT Sbjct 1616 GFVSTPDDVERFYANKSV-VIKV--TEDTRSVKAVKVESTATYGQQIGPCLVNDTVVTDN 1672 Query 1608 KPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLT 1665 KP + V+PN + ++ ++ D + G + L+HT + +P VNG Sbjct 1673 KPVVADVVAK--VVPNAN------WDSHYGFDKA--GEF-HMLDHTG-FTFPSEVVNGRR 1720 Query 1666 SIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGEL 1725 IK DNNC++ L LQ +F LQ + G+ A F + G+ Sbjct 1721 VIKTTDNNCWVNVTCLQLQFARFRFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQP 1780 Query 1726 GDVRETMSYLFQH---ANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKG 1782 D ++ L ++ A + +RV + C C ++ T V A + K G Sbjct 1781 SDSENALNMLSKYIVPAGSVTIERVTHDGC-CCSKRVVTAPVVNASV---------LKLG 1830 Query 1783 VQ---IPCTCGKQATKYLVQQESPFVMMSAP---PAQYELKHGTFTCASEYTGNYQCGHY 1836 V+ P +V+ + V + P P+ LK ++T + GN GHY Sbjct 1831 VEDGLCPHGLNYIGKVVVVKGTTIVVNVGKPVVAPSHLFLKGVSYTTFLD-NGNGVVGHY 1889 Query 1837 KHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPV 1880 + T DG P+T+V E + PV Sbjct 1890 T-VFDHGTGMVHDGDAFVPGDLNVSPVTNVVVSEQTAVVIKDPV 1932 >sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 1187 bits (3070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 757/2209 (34%), Positives = 1173/2209 (53%), Gaps = 157/2209 (7%) Query 2230 IIWFLLLS-VCLG-SLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIP 2287 + WF +L LG +Y+ + + + +G P C GY NS+ YC S+ Sbjct 2020 LYWFKVLGKFSLGIYALYALLFMTIRFTPIGSP-VCDDVVAGYANSS-FDKNEYCN-SVI 2076 Query 2288 CSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIM 2347 C VCL G L + + + W L+ FFY+ LA Sbjct 2077 CKVCLYGYQELSDFSHTQVV--------WQHLRDPLIGN-------VMPFFYLAFLAIFG 2121 Query 2348 QLFFSYFAVHFIS---NSWLMWL----IINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 ++ ++FI NS ++L I +Q+ P + F V HV Sbjct 2122 GVYVKAITLYFIFQYLNSLGVFLGLQQSIWFLQLVPFDVFGDEIVVFFIVTRVLMFIKHV 2181 Query 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 GC+ ++C+ C K R RV TI G +SFYV+ANGG FCK HN+ C+NCD++ Sbjct 2182 CLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGP 2241 Query 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 G TFI+D +A ++ K + PT ++ ++D V NG +LY K + S Sbjct 2242 GCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDITDSK 2301 Query 2521 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 + + L+ S+ + IVF+ + K+A VY+SQ++C+P+ L+D AL++ + Sbjct 2302 YTCKEALK----NCSIITDFIVFNNNGS-NVNQVKNACVYFSQMLCKPVKLVDSALLASL 2356 Query 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV-LSTFISAARQ 2639 S + + A+V+ S++F + + + + D+V L TF +A + Sbjct 2357 --SVDFGASLHSAFVSVLSNSFGKDLSSCNDM-----QDCKSTLGFDDVPLDTFNAAVAE 2409 Query 2640 GFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTP-RDLGACIDCSARH 2698 +H+ D+ +T S NN+ +Y K E P D+ C+ A+ Sbjct 2410 ------------------AHRYDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKI 2451 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 +N V +I ++W V+DF++LSE+ RK I K + F LT R + T I Sbjct 2452 VNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCI 2511 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEI-----IGYKAID 2813 A K G + ++ K + LF+ A F+ ++ DFS+++ +K I+ Sbjct 2512 ANKKGAGLPSFSKVKKFFWFLCLFIVAAFFALS-------FLDFSTQVSSDSDYDFKYIE 2564 Query 2814 GGVTRDIASTDTCFANKHADFDTWFSQRGG-SYTNDKACPLIAAVITREVGFVVPGLPGT 2872 G + + +C N +FD W + G + N+ +CP++ V + VPG+P Sbjct 2565 SGQLKTFDNPLSCVHNVFINFDQWHDAKFGFTPVNNPSCPIVVGV--SDEARTVPGIPAG 2622 Query 2873 ILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPY 2932 + G L F +C+ S + + AC+ + CT G V Y Sbjct 2623 VYLA--GKTLVFAINTIFGTSGLCFDASGVAD-----KGACIFNSACTTLSGLGGTAV-Y 2674 Query 2933 CYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCER 2991 CY ++EG+ Y L P + Y ++DG+ + P G +R + T YCR G C + Sbjct 2675 CYKNGLVEGAKLYSELAPHSYYKMVDGNAVSLPEIISRGFGIRTIRTKAMTYCRVGQCVQ 2734 Query 2992 SEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGG 3051 S GVC +V N + S CG LL N+ + + + +S I+ Sbjct 2735 SAEGVCFGADRFFVYNAE---SGSDFVCGTGLFTLLMNVISVFSKTVPVTVLSGQILFNC 2791 Query 3052 IVAIVVTCLAYYFMRFRRAFGEYS---HVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVI 3108 I+A V + + F +F+R FG+ S V TLL +S+ V T + + Sbjct 2792 IIAFVAVAVCFLFTKFKRMFGDMSVGVFTVGACTLLNNVSYIVTQNT--------LGMLG 2843 Query 3109 YLYLTFYLTNDVSFLA--HIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV- 3165 Y L F T V ++ H+ +++ + + P+W+ + Y + + F N K +V Sbjct 2844 YATLYFLCTKGVRYMWIWHLGFLISYILIAPWWVLMVY----AFSAIFEFMPNLFKLKVS 2899 Query 3166 --VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMD 3222 +F G F +FE AA TF+L+ Y +L + + + +Y + YNKYKY+SG+ Sbjct 2900 TQLFEGDKFVGSFENAAAGTFVLDMHAYERLANSI--STEKLRQYASTYNKYKYYSGSAS 2957 Query 3223 TTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQ 3282 YR A HLAKA+ D++++ +D LY PP S S LQ+G RKMA PSG VE C+V+ Sbjct 2958 EADYRLACFAHLAKAMMDYASNHNDTLYTPPTVSYNST-LQAGLRKMAQPSGVVEKCIVR 3016 Query 3283 VTCGTTTLNGLWLDDVVYCPRHVICTSE-DMLNPNYEDLLIRKSNHNFLVQAGNVQLRVI 3341 V G LNGLWL D+V CPRHVI +S ++ +Y ++R HNF + +GNV L V+ Sbjct 3017 VCYGNMALNGLWLGDIVMCPRHVIASSTTSTIDYDYALSVLRL--HNFSISSGNVFLGVV 3074 Query 3342 GHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKG 3401 +M+ +L++KV+ N TPKY + ++PG++F++LACY+G+ +GVY MR N+TI+G Sbjct 3075 SATMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRG 3134 Query 3402 SFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDT 3461 SF+NG+CGS G+NI+ V FCY+H +EL +G H G+DL+G YG + D+ T Q G + Sbjct 3135 SFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASS 3194 Query 3462 TITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTG 3521 T NVLA+LYAA+ING W+L+ ++ FN A+ T + D L+A+TG Sbjct 3195 LFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMT--TVGNTDCFSILAAKTG 3252 Query 3522 IAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSA-VKRTIKGTH 3580 + V + AS++ L +N G+ ILG L DEFT +VVRQ GV Q V R + Sbjct 3253 VDVQRLLASIQSLHKN-FGGKQILGHTSLTDEFTTGEVVRQMYGVNLQGGYVSRACRN-- 3309 Query 3581 HWLLLTILTSLLVLVQS--TQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCL 3638 + ++ S L S ++ FF++ P + +S+ M +KHK F + Sbjct 3310 ----VLLVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQV 3365 Query 3639 FLLPSLATVAYFNMVYMPASWVMRIMTWL-DMVD--TSLSGFKLKDCVMYASAVVLLILM 3695 FL+P+L + N+ + + + +L + D SL GF + V V+ IL Sbjct 3366 FLIPALIVTSCINLAFD-----VEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILH 3420 Query 3696 TART--VYDDGARRVWTLMNVLTLVYKVYYG-NALDQAISMWALIISVTSNYSGVVTTVM 3752 T ++ A V ++ +LT Y +Y + L A++++A SVT N+ V V Sbjct 3421 GTYTWRFFNTPASSVTYVVALLTAAYNYFYASDILSCAMTLFA---SVTGNW--FVGAVC 3475 Query 3753 FLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYD 3812 + + V+M + + P F ++ +M Y LGYF C++G+ NR+F++++GVYD Sbjct 3476 Y--KVAVYMALRF-PTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYD 3532 Query 3813 YLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVL 3872 Y VS EF+YM + GL P ++D+ L+ KL+G+GG+ IK+++VQSK++D+KC++VVL Sbjct 3533 YTVSAAEFKYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQSKLTDIKCSNVVL 3592 Query 3873 LSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCE 3932 L L + V ++S WA CV LHN I L D +A E +++LL+ LS A ++ L E Sbjct 3593 LGCLSSMNVSANSTEWAYCVDLHNKINLCNDPEKAQEMLLALLAFFLSKNSAFGLDDLLE 3652 Query 3933 EMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFD 3992 ++ + LQ++AS + LPSY + A++ YE AV NG ++K+L+ ++NVAKSEFD Sbjct 3653 SYFNDNSMLQSVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFD 3712 Query 3993 RDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNA 4052 R+A+ QRKL++MA+QA QMYK+AR+ ++++KV SAM ++LF MLR+LD +++ I+N A Sbjct 3713 REASTQRKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLA 3772 Query 4053 RDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLS 4112 +DG VPL++IP +A KL +V D ++Y YA +W I + D D K+V + Sbjct 3773 KDGVVPLSVIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVK 3832 Query 4113 EISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYY 4172 E++ N+ +L+WPL++ R VKLQNNE+ P L+Q S A A Y Sbjct 3833 EVTAQNAESLSWPLVLGCER---IVKLQNNEIIPGKLKQRSIKAEGDGIV---GEGKALY 3886 Query 4173 NTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIK 4232 N G F+ A +SD DL+ ++ G TI ELEPP +F+ D+P G ++KYLYF++ Sbjct 3887 NNEGGRTFMYAFISDKPDLRVVKWEFDGGCNTI--ELEPPRKFLVDSPNGAQIKYLYFVR 3944 Query 4233 GLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPIT 4292 LN L RG VLG + ATVRLQAG TE NS++L+ CAFAVD AK Y D + SG +P+ Sbjct 3945 NLNTLRRGAVLGYIGATVRLQAGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVG 4004 Query 4293 NCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQI 4352 NCVKML +G GQA+T EA+ +Q+S+GGAS CLYCR H++HP+ GFC LKGKYVQ+ Sbjct 4005 NCVKMLANGSGNGQAVTNGVEASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQV 4064 Query 4353 PTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 P DP+ F L+N VC VCG W GC+CD+ ++QS D ++LN Sbjct 4065 PLGTV-DPIRFVLENDVCKVCGCWLSNGCTCDR---SIMQSTD-MAYLN 4108 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/165 (34%), Positives = 74/165 (45%), Gaps = 10/165 (6%) Query 993 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIE---VNSFSGYLKLTDNVYIKNADIVEEA 1049 G + T+ TI L P V ++ V F Y NV D + Sbjct 1255 GRHQIKYDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSY----KNVDFYQGDF-SDL 1309 Query 1050 KKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHN 1109 K+ VVNAAN L HGGG+A A++ T +Q S+DYI +GP+KVG +L Sbjct 1310 VKLPCDFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA-- 1367 Query 1110 LAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIF 1154 L +VVGP K L+K+ F V L PL+S GIF Sbjct 1368 LGLKVFNVVGPRKGKHAPELLVKAYKSVFANSGVALTPLISVGIF 1412 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 85/344 (25%), Positives = 138/344 (40%), Gaps = 38/344 (11%) Query 1548 GEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKI 1607 G V T D+++ + + V IKV T D ++ V+ + TYGQQ GP ++ VT Sbjct 1616 GFVSTPDDVERFYANKSV-VIKV--TEDTRSVKAVKVESTATYGQQIGPCLVNDTVVTDN 1672 Query 1608 KPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLT 1665 KP + V+PN + ++ ++ D + G + L+HT + +P VNG Sbjct 1673 KPVVADVVAK--VVPNAN------WDSHYGFDKA--GEF-HMLDHTG-FTFPSEVVNGRR 1720 Query 1666 SIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGEL 1725 IK DNNC++ L LQ +F LQ + G+ A F + G+ Sbjct 1721 VIKTTDNNCWVNVTCLQLQFARFRFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQP 1780 Query 1726 GDVRETMSYLFQH---ANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKG 1782 D ++ L ++ A + +RV + C C ++ T V A + K G Sbjct 1781 SDSENALNMLSKYIVPAGSVTIERVTHDGC-CCSKRVVTAPVVNASV---------LKLG 1830 Query 1783 VQ---IPCTCGKQATKYLVQQESPFVMMSAP---PAQYELKHGTFTCASEYTGNYQCGHY 1836 V+ P +V+ + V + P P+ LK ++T + GN GHY Sbjct 1831 VEDGLCPHGLNYIGKVVVVKGTTIVVNVGKPVVAPSHLFLKGVSYTTFLD-NGNGVVGHY 1889 Query 1837 KHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPV 1880 + T DG P+T+V E + PV Sbjct 1890 T-VFDHGTGMVHDGDAFVPGDLNVSPVTNVVVSEQTAVVIKDPV 1932 >sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 1182 bits (3058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 773/2279 (34%), Positives = 1201/2279 (53%), Gaps = 187/2279 (8%) Query 2172 FFTLLLQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLI 2227 FFT LL + T ++ + +I A P +S+ K+ L+AS LKS Sbjct 1936 FFTWLLSMFTLCKTAVTTGDVKIMAKAPQRTGVVLKRSL-KYNLKASAAVLKSK------ 1988 Query 2228 NIIIWFLLLSVC-LGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSI 2286 W+LL L LIY+ ++ +L G ++C+ GY S N YC GS+ Sbjct 1989 ----WWLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYAKS-NFVKDDYCDGSL 2043 Query 2287 PCSVCLSGLDSLDTYPSLETI--QITISSFKWDLTAFGLVAEWFL---AYILFTRFFYVL 2341 C +CL G L + L+ + IT F ++ F ++ + Y+ ++V Sbjct 2044 GCKMCLFGYQELSQFSHLDVVWKHITDPLFS-NMQPFIVMVLLLIFGDNYLRCFLLYFVA 2102 Query 2342 GLAAIMQLFFSY----FAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 2397 + + + +F Y + +HFI + ++ V + + + VR Sbjct 2103 QMISTVGVFLGYKETNWFLHFIPFDVICDELLVTVIVIKVISFVR--------------- 2147 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 HV+ GC + C+ C K R R TIVNGV+RSFYV ANGG FCK H + CV+CD+ Sbjct 2148 -HVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDS 2206 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY---------FDKA 2508 + GSTFI+ EV+R+L K + PT + ++D V +NG LY FD Sbjct 2207 YGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDIT 2266 Query 2509 GQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQP 2568 K + + LD+ N G+ NV + K+ASVY+SQL+C+P Sbjct 2267 ESKYSCKEVFKNCNVLDDFIVFNNNGT---NV-----------TQVKNASVYFSQLLCRP 2312 Query 2569 ILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSL-D 2627 I L+D L+S + S + + AY++ ++F + L ++ AE + A +S+ D Sbjct 2313 IKLVDSELLSTL--SVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAECKRALGLSISD 2367 Query 2628 NVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVE-NMTPR 2686 + ++ IS A H+ D+ ++ S NN++ +Y K E ++ Sbjct 2368 HEFTSAISNA---------------------HRCDVLLSDLSFNNFVSSYAKPEEKLSAY 2406 Query 2687 DLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCAT 2746 DL C+ A+ +NA V ++W+ KDF SLS + RK I +K L F LT Sbjct 2407 DLACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINE 2466 Query 2747 TRQVVNVVTTKIALKGGKIVNN----WLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDF 2802 + V + T I K G WL L + + F F ++S Sbjct 2467 NQAVTQIPATSIVAKQGAGDAGHSLTWLWLLCGLVCLIQFYLCFFMPYFMYDIVS----- 2521 Query 2803 SSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTW-FSQRGGSYTNDKACPLIAAVITRE 2861 S E +K I+ G ++ + C N +F+ W +++ G + N ++CP++ V E Sbjct 2522 SFEGYDFKYIENGQLKNFEAPLKCVRNVFENFEDWHYAKFGFTPLNKQSCPIVVGV--SE 2579 Query 2862 VGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICY------TPSKLIEYTDFATSACVL 2915 + V G+P + G L F + +CY TP K C+ Sbjct 2580 IVNTVAGIPSNVYLV--GKTLIFTLQAAFGNAGVCYDIFGVTTPEK-----------CIF 2626 Query 2916 AAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEG-SVR 2974 + CT + G V YCY+T ++EGS+ Y S++ + Y +G+ I+ P +G R Sbjct 2627 TSACTRLEGLGGNNV-YCYNTALMEGSLPYSSIQANAYYKYDNGNFIKLPEVIAQGFGFR 2685 Query 2975 VVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPL 3034 V T ++YCR G C S AGVC +W +N+ R G CG NL+ N+ + Sbjct 2686 TVRTIATKYCRVGECVESNAGVCFGFD-KWFVNDG--RVANGYVCGTGLWNLVFNILSMF 2742 Query 3035 IQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCL 3094 +S I+ + + +FRR FG+ S V + L++ + Sbjct 2743 SSSFSVAAMSGQILLNCALGAFAIFCCFLVTKFRRMFGDLSVGVCTVVVAVLLNNVSYIV 2802 Query 3095 TPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFY 3154 T + Y+++Y + T L +++ +++ + P+W+ Y + + T Sbjct 2803 TQNLVTMIA-YAILYFFATRSLR--YAWIWCAAYLIAYISFAPWWLCAWYFLAMLTG--- 2856 Query 3155 WFFSNYLKRRV---VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLAL 3210 + LK +V +F G F TFE AA TF+++ Y KL + + + Y A Sbjct 2857 -LLPSLLKLKVSTNLFEGDKFVGTFESAAAGTFVIDMRSYEKLANSI--SPEKLKSYAAS 2913 Query 3211 YNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMA 3270 YN+YKY+SG + YR A +LAKA+ DFS +D+LY PP S S LQ+G RKMA Sbjct 2914 YNRYKYYSGNANEADYRCACYAYLAKAMLDFSRDHNDILYTPPTVSYGST-LQAGLRKMA 2972 Query 3271 FPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICT-SEDMLNPNYEDLLIRKSNHNF 3329 PSG VE C+V+V G T LNGLWL D+VYCPRHVI + + ++ ++E ++R HNF Sbjct 2973 QPSGFVEKCVVRVCYGNTVLNGLWLGDIVYCPRHVIASNTTSAIDYDHEYSIMRL--HNF 3030 Query 3330 LVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3389 + +G L V+G +M LK+KV N TP++ F ++ G+ F++LACY+G GV+ Sbjct 3031 SIISGTAFLGVVGATMHGVTLKIKVSQTNMHTPRHSFRTLKSGEGFNILACYDGCAQGVF 3090 Query 3390 QCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 3449 MR N+TI+GSF+NG+CGS G+N+ V F YMH +EL +G H G+ +G YG F Sbjct 3091 GVNMRTNWTIRGSFINGACGSPGYNLKNGEVEFVYMHQIELGSGSHVGSSFDGVMYGGFE 3150 Query 3450 DRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3509 D+ Q + +TVNV+A+LYAA++NG W+L + +N A + + + Sbjct 3151 DQPNLQVESANQMLTVNVVAFLYAAILNGCTWWLKGEKLFVEHYNEWAQANGFTAMNGE- 3209 Query 3510 VDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ 3569 D L+A+TG+ V + ++ ++L NG G+ ILG + L DEF+ +VV+Q GV Q Sbjct 3210 -DAFSILAAKTGVCVERLLHAI-QVLNNGFGGKQILGYSSLNDEFSINEVVKQMFGVNLQ 3267 Query 3570 SAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYEN-AFL-PFAMGIIAMSAFAMM 3627 S K T + +++ V+ + + ++ N FL PF + ++A+S Sbjct 3268 SG-----KTTSMFKSISLFAGFFVMFWAELFVYTTTIWVNPGFLTPFMILLVALSLCLTF 3322 Query 3628 FVKHKHAFLCLFLLPSLATVAYFNMVYMPASW---VMRIMTWLDMVDTSLSGFKLKDCVM 3684 VKHK FL +FLLPS+ A N +W V +++ + S+ ++ V Sbjct 3323 VVKHKVLFLQVFLLPSIIVAAIQN-----CAWDYHVTKVLAEKFDYNVSVMQMDIQGFVN 3377 Query 3685 YASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNY 3744 + + +L T R + L +++ ++Y Y +S+ +++ SN Sbjct 3378 IFICLFVALLHTWRFAKERCTHWCTYLFSLIAVLYTALYSY---DYVSLLVMLLCAISNE 3434 Query 3745 SGVVTTVMFLAR-GIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 + + + R G+ F+ VEY F + ++ ++L Y LG+ Y+GL +NR+ Sbjct 3435 WYIGAIIFRICRFGVAFLPVEYVSYF----DGVKTVLLFYMLLGFVSCMYYGLLYWINRF 3490 Query 3804 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMS 3863 + TLGVYD+ VS EF+YM + GL P DA L+ KL+G+GG IKV+TVQSK++ Sbjct 3491 CKCTLGVYDFCVSPAEFKYMVANGLNAPNGPFDALFLSFKLMGIGGPRTIKVSTVQSKLT 3550 Query 3864 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3923 D+KCT+VVL+ +L + + S+SK WA CV++HN I L D A E +++LL+ LS Sbjct 3551 DLKCTNVVLMGILSNMNIASNSKEWAYCVEMHNKINLCDDPETAQELLLALLAFFLSKHS 3610 Query 3924 AVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKS 3983 + L + +N + LQ++AS F +PS+ A+ TA++ YE AVANG S ++K+LKK+ Sbjct 3611 DFGLGDLVDSYFENDSILQSVASSFVGMPSFVAYETARQEYENAVANGSSPQIIKQLKKA 3670 Query 3984 LNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDND 4043 +NVAK+EFDR++++Q+K+ +MA+QA MYK+AR+ ++++KV SAM ++LF MLR+LD Sbjct 3671 MNVAKAEFDRESSVQKKINRMAEQAAAAMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMS 3730 Query 4044 ALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY-KNTCDGTTFTYASALWEIQQVV 4102 +++ I+N AR+G VPL++IP T+AA+L+VV+PD++++ K DG YA +W +Q+V Sbjct 3731 SVDTILNMARNGVVPLSVIPATSAARLVVVVPDHDSFVKMMVDGFVH-YAGVVWTLQEVK 3789 Query 4103 DADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTA 4162 D D K V L +++ +N L WPLI+T R VKLQNNE+ P ++ + Sbjct 3790 DNDGKNVHLKDVTKENQEILVWPLILTCER---VVKLQNNEIMPGKMKVKATKGEGDGGI 3846 Query 4163 CTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG 4222 ++ NAL YN G F+ A ++ +K+ ++ G T+ ELEPPCRFV DTP G Sbjct 3847 TSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKWEHDSGVVTV--ELEPPCRFVIDTPTG 3902 Query 4223 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKD 4282 P++KYLYF+K LNNL RG VLG + ATVRLQAG TE +NS +L+ C+FAVD A AY D Sbjct 3903 PQIKYLYFVKNLNNLRRGAVLGYIGATVRLQAGKQTEFVSNSHLLTHCSFAVDPAAAYLD 3962 Query 4283 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF 4342 + G +P+ NCVKML +G+GQAIT T ++N Q+++GGAS C+YCR H+ HP GF Sbjct 3963 AVKQGAKPVGNCVKMLTNGSGSGQAITCTIDSNTTQDTYGGASVCIYCRAHVAHPTMDGF 4022 Query 4343 CDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 C KGK+VQ+P NDP+ F L+NTVC VCG W +GC+CD+ +QS D S+LN Sbjct 4023 CQYKGKWVQVPIG-TNDPIRFCLENTVCKVCGCWLNHGCTCDR---TAIQSFD-NSYLN 4076 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 71/245 (29%), Positives = 110/245 (45%), Gaps = 16/245 (7%) Query 991 QDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYL---KLT-----DNVYIKN 1042 Q + D T + ++E+ +TP+ T++ ++ KL DNV Sbjct 1226 QPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEFVVKEKLNAFLVHDNVAFYQ 1285 Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 1102 D+ V +VNAAN L HGGG+A AL+ T +Q S ++I G +KVG Sbjct 1286 GDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTG 1345 Query 1103 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSL 1162 ++ +L +VVGP K E L+K+ N+ L P+LS GIFG SL Sbjct 1346 VMVECDSL--RIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSL 1403 Query 1163 RVCVDTVRTN-VYLAVFDKNLYDKL---VSSFLEMKSEKQ--VEQKIAEIPKEEVKPFIT 1216 V +D T V + V+ K+ VS + ++ +Q +E K + K KP+ Sbjct 1404 EVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRV 1463 Query 1217 ESKPS 1221 + K S Sbjct 1464 DGKFS 1468 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 74/339 (22%), Positives = 137/339 (40%), Gaps = 30/339 (9%) Query 1560 LSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFY 1619 L E + I + T D +N+H V ++ QQ G D++ P + + + Sbjct 1595 LKAAEAKVITIKVTEDGVNVHDVTVTTDKSFEQQVGVIADKDKDLSGAVPSDLNTSELL- 1653 Query 1620 VLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLAT 1678 + V+ E+Y D + ++H+ ++ VNG+ +K +DNNC++ Sbjct 1654 ----TKAIDVDWVEFYGFKD----AVTFATVDHSAFAYESAVVNGIRVLKTSDNNCWVNA 1705 Query 1679 ALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH 1738 + LQ + F L A+ + G+ F A + G+ GD +T++ L ++ Sbjct 1706 VCIALQYSKPHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKGDAEDTLTKLSKY 1765 Query 1739 -ANLDSCKRVLNVVCKTCGQQ-QTTLKGVEAVMYMGTLSYEQFKKGVQIP-CTCGKQATK 1795 AN + C C + + ++ + + + ++ + GVQ+ C G + Sbjct 1766 LANEAQVQLEHYSSCVECDAKFKNSVASINSAIVCASVK----RDGVQVGYCVHGIKYYS 1821 Query 1796 YLVQQESPFVMMSA----PPAQYELKHGTFTCASEYTGNYQCGHYK-HITSKETLYCIDG 1850 + +++S P AQ L G A ++G GHY + T+K+++Y DG Sbjct 1822 RVRSVRGRAIIVSVEQLEPCAQSRLLSGVAYTA--FSGPVDKGHYTVYDTAKKSMY--DG 1877 Query 1851 ALLTKSSEYKGPITDVF----YKENSYTTTIKPVTYKLD 1885 K +T V Y T KPV +LD Sbjct 1878 DRFVKHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLD 1916 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 110/267 (41%), Gaps = 18/267 (7%) Query 1658 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 1717 + ++NGL +K DNNC++ + +L +Q + A+Q + R + C Sbjct 1038 FEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQ-FFKMGRVAKMIERC-YTAEQ 1095 Query 1718 CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 1777 C + G +GDV M L + +L + V++ C +C + G AV++ T + + Sbjct 1096 CIR--GAMGDVGLCMYRLLK--DLHTGFMVMDYKC-SCTSGRLEESG--AVLFC-TPTKK 1147 Query 1778 QFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYK 1837 F G + C + T +Q FV P C+S + G CGHY+ Sbjct 1148 AFPYGTCLNCNAPRMCTIRQLQGTIIFVQQKPEPVNPVSFVVKPVCSSIFRGAVSCGHYQ 1207 Query 1838 HITSKETLYCIDGALLTKSSEY-KGPITDVFYKENSYTT----TIKPVTYKLDGVVCTE- 1891 + L C+DG + K + + + K+ Y ++ P+ +D E Sbjct 1208 TNIYSQNL-CVDGFGVNKIQPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEF 1266 Query 1892 -IDPKLDNYYKKDNSYFTEQPIDLVPN 1917 + KL+ + DN F + +D V N Sbjct 1267 VVKEKLNAFLVHDNVAFYQGDVDTVVN 1293 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 61/267 (23%), Positives = 106/267 (40%), Gaps = 27/267 (10%) Query 662 GQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCV 721 G + TCAK K + + N FL ++ IGG K + ++ + + Sbjct 749 GLLGTCAKRFKRWLGILLEAYNAFLDTVVSTVKIGGLTFKTYAFDKPYIVIRDIVCKVEN 808 Query 722 KSREETGLLMPLKAP-KEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 K+ E L P K E +P T D++ +E +E VE G Sbjct 809 KTEAEWIELFPHNDRIKSFSTFESAYMPIADPTHF------DIEEVELLDAEFVEPGCGG 862 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDT-VIEVQGYKSV 839 I+ + + KD Y + N++ FT G KV+F DD V +++ V Sbjct 863 ILAVIDEHVFYK-KDGVYYPSNGTNILPV--AFTKAAGG--KVSFSDDVEVKDIEPVYRV 917 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 + FE + D+ L + C +G ++ D+ KT+Q +++ Sbjct 918 KLCFEFE---DEKLVDVCEK---AIGKKIKHEG--DWDSFCKTIQSALSVVSCY------ 963 Query 900 WSMATYYLFDESGEFKLASHMYCSFYP 926 ++ TYY++DE G L+ + S +P Sbjct 964 VNLPTYYIYDEEGGNDLSLPVMISEWP 990 >sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus 229E OX=11137 GN=1a PE=1 SV=1 Length=4085 Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 773/2279 (34%), Positives = 1201/2279 (53%), Gaps = 187/2279 (8%) Query 2172 FFTLLLQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLI 2227 FFT LL + T ++ + +I A P +S+ K+ L+AS LKS Sbjct 1936 FFTWLLSMFTLCKTAVTTGDVKIMAKAPQRTGVVLKRSL-KYNLKASAAVLKSK------ 1988 Query 2228 NIIIWFLLLSVC-LGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSI 2286 W+LL L LIY+ ++ +L G ++C+ GY S N YC GS+ Sbjct 1989 ----WWLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYAKS-NFVKDDYCDGSL 2043 Query 2287 PCSVCLSGLDSLDTYPSLETI--QITISSFKWDLTAFGLVAEWFL---AYILFTRFFYVL 2341 C +CL G L + L+ + IT F ++ F ++ + Y+ ++V Sbjct 2044 GCKMCLFGYQELSQFSHLDVVWKHITDPLFS-NMQPFIVMVLLLIFGDNYLRCFLLYFVA 2102 Query 2342 GLAAIMQLFFSY----FAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 2397 + + + +F Y + +HFI + ++ V + + + VR Sbjct 2103 QMISTVGVFLGYKETNWFLHFIPFDVICDELLVTVIVIKVISFVR--------------- 2147 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 HV+ GC + C+ C K R R TIVNGV+RSFYV ANGG FCK H + CV+CD+ Sbjct 2148 -HVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDS 2206 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY---------FDKA 2508 + GSTFI+ EV+R+L K + PT + ++D V +NG LY FD Sbjct 2207 YGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDIT 2266 Query 2509 GQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQP 2568 K + + LD+ N G+ NV + K+ASVY+SQL+C+P Sbjct 2267 ESKYSCKEVFKNCNVLDDFIVFNNNGT---NV-----------TQVKNASVYFSQLLCRP 2312 Query 2569 ILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSL-D 2627 I L+D L+S + S + + AY++ ++F + L ++ AE + A +S+ D Sbjct 2313 IKLVDSELLSTL--SVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAECKRALGLSISD 2367 Query 2628 NVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVE-NMTPR 2686 + ++ IS A H+ D+ ++ S NN++ +Y K E ++ Sbjct 2368 HEFTSAISNA---------------------HRCDVLLSDLSFNNFVSSYAKPEEKLSAY 2406 Query 2687 DLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCAT 2746 DL C+ A+ +NA V ++W+ KDF SLS + RK I +K L F LT Sbjct 2407 DLACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINE 2466 Query 2747 TRQVVNVVTTKIALKGGKIVNN----WLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDF 2802 + V + T I K G WL L + + F F ++S Sbjct 2467 NQAVTQIPATSIVAKQGAGDAGHSLTWLWLLCGLVCLIQFYLCFFMPYFMYDIVS----- 2521 Query 2803 SSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTW-FSQRGGSYTNDKACPLIAAVITRE 2861 S E +K I+ G ++ + C N +F+ W +++ G + N ++CP++ V E Sbjct 2522 SFEGYDFKYIENGQLKNFEAPLKCVRNVFENFEDWHYAKFGFTPLNKQSCPIVVGV--SE 2579 Query 2862 VGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICY------TPSKLIEYTDFATSACVL 2915 + V G+P + G L F + +CY TP K C+ Sbjct 2580 IVNTVAGIPSNVYLV--GKTLIFTLQAAFGNAGVCYDIFGVTTPEK-----------CIF 2626 Query 2916 AAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEG-SVR 2974 + CT + G V YCY+T ++EGS+ Y S++ + Y +G+ I+ P +G R Sbjct 2627 TSACTRLEGLGGNNV-YCYNTALMEGSLPYSSIQANAYYKYDNGNFIKLPEVIAQGFGFR 2685 Query 2975 VVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPL 3034 V T ++YCR G C S AGVC +W +N+ R G CG NL+ N+ + Sbjct 2686 TVRTIATKYCRVGECVESNAGVCFGFD-KWFVNDG--RVANGYVCGTGLWNLVFNILSMF 2742 Query 3035 IQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCL 3094 +S I+ + + +FRR FG+ S V + L++ + Sbjct 2743 SSSFSVAAMSGQILLNCALGAFAIFCCFLVTKFRRMFGDLSVGVCTVVVAVLLNNVSYIV 2802 Query 3095 TPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFY 3154 T + Y+++Y + T L +++ +++ + P+W+ Y + + T Sbjct 2803 TQNLVTMIA-YAILYFFATRSLR--YAWIWCAAYLIAYISFAPWWLCAWYFLAMLTG--- 2856 Query 3155 WFFSNYLKRRV---VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLAL 3210 + LK +V +F G F TFE AA TF+++ Y KL + + + Y A Sbjct 2857 -LLPSLLKLKVSTNLFEGDKFVGTFESAAAGTFVIDMRSYEKLANSI--SPEKLKSYAAS 2913 Query 3211 YNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMA 3270 YN+YKY+SG + YR A +LAKA+ DFS +D+LY PP S S LQ+G RKMA Sbjct 2914 YNRYKYYSGNANEADYRCACYAYLAKAMLDFSRDHNDILYTPPTVSYGST-LQAGLRKMA 2972 Query 3271 FPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICT-SEDMLNPNYEDLLIRKSNHNF 3329 PSG VE C+V+V G T LNGLWL D+VYCPRHVI + + ++ ++E ++R HNF Sbjct 2973 QPSGFVEKCVVRVCYGNTVLNGLWLGDIVYCPRHVIASNTTSAIDYDHEYSIMRL--HNF 3030 Query 3330 LVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3389 + +G L V+G +M LK+KV N TP++ F ++ G+ F++LACY+G GV+ Sbjct 3031 SIISGTAFLGVVGATMHGVTLKIKVSQTNMHTPRHSFRTLKSGEGFNILACYDGCAQGVF 3090 Query 3390 QCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 3449 MR N+TI+GSF+NG+CGS G+N+ V F YMH +EL +G H G+ +G YG F Sbjct 3091 GVNMRTNWTIRGSFINGACGSPGYNLKNGEVEFVYMHQIELGSGSHVGSSFDGVMYGGFE 3150 Query 3450 DRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3509 D+ Q + +TVNV+A+LYAA++NG W+L + +N A + + + Sbjct 3151 DQPNLQVESANQMLTVNVVAFLYAAILNGCTWWLKGEKLFVEHYNEWAQANGFTAMNGE- 3209 Query 3510 VDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ 3569 D L+A+TG+ V + ++ ++L NG G+ ILG + L DEF+ +VV+Q GV Q Sbjct 3210 -DAFSILAAKTGVCVERLLHAI-QVLNNGFGGKQILGYSSLNDEFSINEVVKQMFGVNLQ 3267 Query 3570 SAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYEN-AFL-PFAMGIIAMSAFAMM 3627 S K T + +++ V+ + + ++ N FL PF + ++A+S Sbjct 3268 SG-----KTTSMFKSISLFAGFFVMFWAELFVYTTTIWVNPGFLTPFMILLVALSLCLTF 3322 Query 3628 FVKHKHAFLCLFLLPSLATVAYFNMVYMPASW---VMRIMTWLDMVDTSLSGFKLKDCVM 3684 VKHK FL +FLLPS+ A N +W V +++ + S+ ++ V Sbjct 3323 VVKHKVLFLQVFLLPSIIVAAIQN-----CAWDYHVTKVLAEKFDYNVSVMQMDIQGFVN 3377 Query 3685 YASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNY 3744 + + +L T R + L +++ ++Y Y +S+ +++ SN Sbjct 3378 IFICLFVALLHTWRFAKERCTHWCTYLFSLIAVLYTALYSY---DYVSLLVMLLCAISNE 3434 Query 3745 SGVVTTVMFLAR-GIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 + + + R G+ F+ VEY F + ++ ++L Y LG+ Y+GL +NR+ Sbjct 3435 WYIGAIIFRICRFGVAFLPVEYVSYF----DGVKTVLLFYMLLGFVSCMYYGLLYWINRF 3490 Query 3804 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMS 3863 + TLGVYD+ VS EF+YM + GL P DA L+ KL+G+GG IKV+TVQSK++ Sbjct 3491 CKCTLGVYDFCVSPAEFKYMVANGLNAPNGPFDALFLSFKLMGIGGPRTIKVSTVQSKLT 3550 Query 3864 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3923 D+KCT+VVL+ +L + + S+SK WA CV++HN I L D A E +++LL+ LS Sbjct 3551 DLKCTNVVLMGILSNMNIASNSKEWAYCVEMHNKINLCDDPETAQELLLALLAFFLSKHS 3610 Query 3924 AVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKS 3983 + L + +N + LQ++AS F +PS+ A+ TA++ YE AVANG S ++K+LKK+ Sbjct 3611 DFGLGDLVDSYFENDSILQSVASSFVGMPSFVAYETARQEYENAVANGSSPQIIKQLKKA 3670 Query 3984 LNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDND 4043 +NVAK+EFDR++++Q+K+ +MA+QA MYK+AR+ ++++KV SAM ++LF MLR+LD Sbjct 3671 MNVAKAEFDRESSVQKKINRMAEQAAAAMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMS 3730 Query 4044 ALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY-KNTCDGTTFTYASALWEIQQVV 4102 +++ I+N AR+G VPL++IP T+AA+L+VV+PD++++ K DG YA +W +Q+V Sbjct 3731 SVDTILNMARNGVVPLSVIPATSAARLVVVVPDHDSFVKMMVDGFVH-YAGVVWTLQEVK 3789 Query 4103 DADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTA 4162 D D K V L +++ +N L WPLI+T R VKLQNNE+ P ++ + Sbjct 3790 DNDGKNVHLKDVTKENQEILVWPLILTCER---VVKLQNNEIMPGKMKVKATKGEGDGGI 3846 Query 4163 CTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG 4222 ++ NAL YN G F+ A ++ +K+ ++ G T+ ELEPPCRFV DTP G Sbjct 3847 TSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKWEHDSGVVTV--ELEPPCRFVIDTPTG 3902 Query 4223 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKD 4282 P++KYLYF+K LNNL RG VLG + ATVRLQAG TE +NS +L+ C+FAVD A AY D Sbjct 3903 PQIKYLYFVKNLNNLRRGAVLGYIGATVRLQAGKQTEFVSNSHLLTHCSFAVDPAAAYLD 3962 Query 4283 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF 4342 + G +P+ NCVKML +G+GQAIT T ++N Q+++GGAS C+YCR H+ HP GF Sbjct 3963 AVKQGAKPVGNCVKMLTNGSGSGQAITCTIDSNTTQDTYGGASVCIYCRAHVAHPTMDGF 4022 Query 4343 CDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 C KGK+VQ+P NDP+ F L+NTVC VCG W +GC+CD+ +QS D S+LN Sbjct 4023 CQYKGKWVQVPIG-TNDPIRFCLENTVCKVCGCWLNHGCTCDR---TAIQSFD-NSYLN 4076 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/245 (29%), Positives = 110/245 (45%), Gaps = 16/245 (7%) Query 991 QDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYL---KLT-----DNVYIKN 1042 Q + D T + ++E+ +TP+ T++ ++ KL DNV Sbjct 1226 QPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEFVVKEKLNAFLVHDNVAFYQ 1285 Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 1102 D+ V +VNAAN L HGGG+A AL+ T +Q S ++I G +KVG Sbjct 1286 GDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTG 1345 Query 1103 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSL 1162 ++ +L +VVGP K E L+K+ N+ L P+LS GIFG SL Sbjct 1346 VMVECDSL--RIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSL 1403 Query 1163 RVCVDTVRTN-VYLAVFDKNLYDKL---VSSFLEMKSEKQ--VEQKIAEIPKEEVKPFIT 1216 V +D T V + V+ K+ VS + ++ +Q +E K + K KP+ Sbjct 1404 EVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRV 1463 Query 1217 ESKPS 1221 + K S Sbjct 1464 DGKFS 1468 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 74/339 (22%), Positives = 137/339 (40%), Gaps = 30/339 (9%) Query 1560 LSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFY 1619 L E + I + T D +N+H V ++ QQ G D++ P + + + Sbjct 1595 LKAAEAKVITIKVTEDGVNVHDVTVTTDKSFEQQVGVIADKDKDLSGAVPSDLNTSELL- 1653 Query 1620 VLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLAT 1678 + V+ E+Y D + ++H+ ++ VNG+ +K +DNNC++ Sbjct 1654 ----TKAIDVDWVEFYGFKD----AVTFATVDHSAFAYESAVVNGIRVLKTSDNNCWVNA 1705 Query 1679 ALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH 1738 + LQ + F L A+ + G+ F A + G+ GD +T++ L ++ Sbjct 1706 VCIALQYSKPHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKGDAEDTLTKLSKY 1765 Query 1739 -ANLDSCKRVLNVVCKTCGQQ-QTTLKGVEAVMYMGTLSYEQFKKGVQIP-CTCGKQATK 1795 AN + C C + + ++ + + + ++ + GVQ+ C G + Sbjct 1766 LANEAQVQLEHYSSCVECDAKFKNSVASINSAIVCASVK----RDGVQVGYCVHGIKYYS 1821 Query 1796 YLVQQESPFVMMSA----PPAQYELKHGTFTCASEYTGNYQCGHYK-HITSKETLYCIDG 1850 + +++S P AQ L G A ++G GHY + T+K+++Y DG Sbjct 1822 RVRSVRGRAIIVSVEQLEPCAQSRLLSGVAYTA--FSGPVDKGHYTVYDTAKKSMY--DG 1877 Query 1851 ALLTKSSEYKGPITDVF----YKENSYTTTIKPVTYKLD 1885 K +T V Y T KPV +LD Sbjct 1878 DRFVKHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLD 1916 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 110/267 (41%), Gaps = 18/267 (7%) Query 1658 YPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAY 1717 + ++NGL +K DNNC++ + +L +Q + A+Q + R + C Sbjct 1038 FEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQ-FFKMGRVAKMIERC-YTAEQ 1095 Query 1718 CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 1777 C + G +GDV M L + +L + V++ C +C + G AV++ T + + Sbjct 1096 CIR--GAMGDVGLCMYRLLK--DLHTGFMVMDYKC-SCTSGRLEESG--AVLFC-TPTKK 1147 Query 1778 QFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYK 1837 F G + C + T +Q FV P C+S + G CGHY+ Sbjct 1148 AFPYGTCLNCNAPRMCTIRQLQGTIIFVQQKPEPVNPVSFVVKPVCSSIFRGAVSCGHYQ 1207 Query 1838 HITSKETLYCIDGALLTKSSEY-KGPITDVFYKENSYTT----TIKPVTYKLDGVVCTE- 1891 + L C+DG + K + + + K+ Y ++ P+ +D E Sbjct 1208 TNIYSQNL-CVDGFGVNKIQPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEF 1266 Query 1892 -IDPKLDNYYKKDNSYFTEQPIDLVPN 1917 + KL+ + DN F + +D V N Sbjct 1267 VVKEKLNAFLVHDNVAFYQGDVDTVVN 1293 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 61/268 (23%), Positives = 103/268 (38%), Gaps = 29/268 (11%) Query 662 GQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCV 721 G + TCAK K + + N FL ++ IGG K + ++ + + Sbjct 749 GLLGTCAKRFKRWLGILLEAYNAFLDTVVSTVKIGGLTFKTYAFDKPYIVIRDIVCKVEN 808 Query 722 KSREETGLLMPLKAP-KEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 K+ E L P K E +P T D++ +E +E VE G Sbjct 809 KTEAEWIELFPHNDRIKSFSTFESAYMPIADPTHF------DIEEVELLDAEFVEPGCGG 862 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDT-VIEVQGYKSV 839 I+ + + KD Y + N++ FT G KV+F DD V +++ V Sbjct 863 ILAVIDEHVFYK-KDGVYYPSNGTNILPV--AFTKAAGG--KVSFSDDVEVKDIEPVYRV 917 Query 840 NITFEL-DERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLD 898 + FE DE++ V + G D+ KT+Q +++ Sbjct 918 KLCFEFEDEKLVDVCEKAIGKKIKHEGD---------WDSFCKTIQSALSVVSCYV---- 964 Query 899 EWSMATYYLFDESGEFKLASHMYCSFYP 926 ++ TYY++DE G L+ + S +P Sbjct 965 --NLPTYYIYDEEGGNDLSLPVMISEWP 990 >sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=1a PE=1 SV=1 Length=4017 Score = 1123 bits (2906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 724/2189 (33%), Positives = 1123/2189 (51%), Gaps = 151/2189 (7%) Query 2263 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----L 2318 C G + Y NS+ + A C SI C CL+ D L + L+ S W+ L Sbjct 1921 CNGAVQAYKNSSFIKSAV-CGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQL 1979 Query 2319 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 2378 + F +A + Y+ R F + ++ + L+ SYF ++ SW + ++V IS Sbjct 1980 SYFAFLAVFGNNYV---RCFLMYFVSQYLNLWLSYFG--YVEYSWFL----HVVNFESIS 2030 Query 2379 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 2438 A + + K H+V C++ +C C + R TR+ +VNG ++ YV+A Sbjct 2031 AEFVIVVIVVKAVLALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHA 2087 Query 2439 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 2498 NG FCK HN+ C NCD++ +TFI DE+ RDLS K+ + TD+S V V + Sbjct 2088 NGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSD 2147 Query 2499 GSIHLY---------FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 2549 G Y +D +K + L + LD+ + GS NV Sbjct 2148 GFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV--------- 2198 Query 2550 EESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKL 2609 ++A VY+SQL+ +PI +++ L+ D+ S + +F+A N ++FNV + + Sbjct 2199 -----RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSEC 2251 Query 2610 KTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDS 2669 K L E + +L+ STF A +H+ I +T S Sbjct 2252 KNL-----DECYRACNLNVSFSTFEMAVNN------------------AHRFGILITDRS 2288 Query 2670 CNNYMLTYNK--VENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRK 2727 NN+ + K ++ D+G C+ A+ +NA+V +++W +DF +LS +K Sbjct 2289 FNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQK 2348 Query 2728 QIRSAAKKNNLPFKLTCATTRQVVNV----VTTKIALKGGK---IVNNWLKQLIKVTLVF 2780 + + + F LT ++ T ++ K G V LKQ++ + VF Sbjct 2349 VLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTESVSPKSGSGFFDVITQLKQIVILVFVF 2408 Query 2781 LFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQ 2840 +F+ L + V ++ S+E Y I G+ + T +C N + F WF Sbjct 2409 IFICG---LCSVYSVATQSYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKA 2465 Query 2841 RGGSY-TNDKACPLIAA-VITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYT 2898 + G T K+CP++ V E +P +P + + G L F V N+CY Sbjct 2466 KYGFIPTFGKSCPIVVGTVFDLENMRPIPDVPAYV--SIVGRSLVFAINAAFGVTNMCYD 2523 Query 2899 PSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMD 2958 + D CV CT G V YC ++EG+ Y L PD Y Sbjct 2524 HTGNAVSKDSYFDTCVFNTACTTLTGLGGTIV-YCAKQGLVEGAKLYSDLMPDYYYEHAS 2582 Query 2959 GSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVF 3018 G++++ P +R V T + YCR G C S+AG C +V +N++ G Sbjct 2583 GNMVKLPAIIRGLGLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGN---GYI 2639 Query 3019 CGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVV 3078 CG + N+F + + S +++ I+A + + Y ++F++ FG+ Sbjct 2640 CGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDC---- 2695 Query 3079 AFNTLLFLMSFTVLCLTPVYSFLPG--VYSVIYLYLTFYLTNDVSF--LAHIQWMVMFTP 3134 T L +M L + V F+ + +IY + +++T +++ + +++ + Sbjct 2696 ---TFLIVMIIVTLVVNNVSYFVTQNTFFMIIYAIVYYFITRKLAYPGILDAGFIIAYIN 2752 Query 3135 LVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFNGVSF-STFEEAALCTFLLNKEMY 3190 + P+++ AYI+ Y + K +V +F G F FE AA+ TF+++ Y Sbjct 2753 MAPWYVITAYILVF----LYDSLPSLFKLKVSTNLFEGDKFVGNFESAAMGTFVIDMRSY 2808 Query 3191 LKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLY 3250 + + + + Y +NKYKY++G+M YR A HL KAL D+S + +D+LY Sbjct 2809 ETIVNST--SIARIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLY 2866 Query 3251 QPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSE 3310 PP S+ S LQSG RKMA PSG VE C+V+V+ G LNGLWL D V CPRHVI S+ Sbjct 2867 TPPTVSVNST-LQSGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVI-ASD 2924 Query 3311 DMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQ 3370 NYE+ + HNF V NV L V+ + L LKV+ NP TP++KF I+ Sbjct 2925 TTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIK 2984 Query 3371 PGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMEL 3430 G++F++LACY G P VY MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL Sbjct 2985 AGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLEL 3044 Query 3431 PTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTL 3490 G H G++ EG YG + D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + +L Sbjct 3045 GNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSL 3104 Query 3491 NDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALL 3550 +N A ++ L+ D L+A+TG +V + S+ L G GRTIL L Sbjct 3105 ESYNTWAKTNSFTELSS--TDAFSMLAAKTGQSVEKLLDSIVRL-NKGFGGRTILSYGSL 3161 Query 3551 EDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLY--- 3607 DEFTP +V+RQ GV Q+ ++ + ++T +T L W L FF+Y Sbjct 3162 CDEFTPTEVIRQMYGVNLQAGKVKSF----FYPIMTAMTILFAF-----W-LEFFMYTPF 3211 Query 3608 ---ENAFLPFAMGIIAM-SAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRI 3663 F+ + + + S + +KHK F F+LPS+ V N+ + S+ + Sbjct 3212 TWINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNL-FWDFSYYESL 3270 Query 3664 MTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYY 3723 + ++ +T ++ ++ ++ + + R + + +L + V Sbjct 3271 QSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKI 3330 Query 3724 GNALDQA----------ISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITG 3773 D+ ++M +I+S+T+ VV +A IV +CV P F++ Sbjct 3331 FGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIV-VCV--MPSAFVSD 3387 Query 3774 -NTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++CI +VY GY CY+G+ +NR+ +T GVY + VS E +YM + L PK Sbjct 3388 FGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPK 3447 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 N+ DA L+ KL+GVGGK IK++TVQSK++++KCT+VVLL +L ++ VES+SK W CV Sbjct 3448 NAYDAMILSAKLIGVGGKRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCV 3507 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLP 3952 LHN+I L D EK+++L++ LS D+++L E +N LQ++AS +++LP Sbjct 3508 GLHNEINLCDDPEIVLEKLLALIAFFLSKHNTCDLSELIESYFENTTILQSVASAYAALP 3567 Query 3953 SYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQM 4012 S+ A A+ E+A N S +LK+L K+ N+AKS+F+R+A++Q+KL+KMA+QA M Sbjct 3568 SWIALEKARADLEEAKKNDVSPQILKQLTKAFNIAKSDFEREASVQKKLDKMAEQAAASM 3627 Query 4013 YKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMV 4072 YK+AR+ D+++K+ SAM ++LF ML+KLD ++N II+ AR+G +PL+IIP +A +L+V Sbjct 3628 YKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIDQARNGVLPLSIIPAASATRLVV 3687 Query 4073 VIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR 4132 + P + YA A+W I +V DA+ V L E++ N NL WPL +T R Sbjct 3688 ITPSLEVFSKIRQENNVHYAGAIWTIVEVKDANGSHVHLKEVTAANELNLTWPLSITCER 3747 Query 4133 ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLK 4192 KLQNNE+ P L++ + A T + A + G F+ A ++ +LK Sbjct 3748 ---TTKLQNNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLK 3804 Query 4193 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRL 4252 + ++ ++ I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATVRL Sbjct 3805 YVKWESNN--DIIPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRL 3862 Query 4253 QAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP 4312 QAG TE P+NS++L+ CAF+ D AKAY D + G QP+ NCVKML G G A+T Sbjct 3863 QAGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGV 3922 Query 4313 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTV 4372 EAN Q+S+GGAS C+YCRCH++HP G C KGK+VQIPT DP+ F ++N VC V Sbjct 3923 EANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVV 3981 Query 4373 CGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 CG W GC CD R M QS+LN Sbjct 3982 CGCWLNNGCMCD--RTSMQSFTVDQSYLN 4008 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/288 (24%), Positives = 123/288 (43%), Gaps = 38/288 (13%) Query 986 QTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADI 1045 + V QQ E+N+++ + ++ P+ + + P + +++ + G L + N Sbjct 1293 EKVEQQPIVEENKSSIEKEEIQ-SPKNDDLILPFYKAGKLSFYQGALDVLINF------- 1344 Query 1046 VEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVL 1105 ++P V+VNAAN LKH GGVA A++ T + S DY+ N + G + Sbjct 1345 ------LEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFF 1398 Query 1106 SGHNLAKH--CLHVVGPNVNKGEDIQLLKSAYENFNQHE-VLLAPLLSAGIFGADPIHSL 1162 N+ +H L+ VGP L + Y+ + E +L PL+S GIF Sbjct 1399 --ENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIF-------- 1448 Query 1163 RVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITESKP 1220 VR L K + D+ ++ F+ E+Q + IP + + + Sbjct 1449 -----NVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHERV 1503 Query 1221 SVEQRKQDDKKIKACV----EEVTTTLEETKFLTENLLLYIDINGNLH 1264 SV K +++K V ++VT L + + ++ IDI+ H Sbjct 1504 SVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAH 1551 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 58/235 (25%), Positives = 95/235 (40%), Gaps = 34/235 (14%) Query 1656 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 1715 +K +NG +K DNNC++ LQ + FN +A+ + + G+ +F L Sbjct 1075 FKTTNLNGKIILKQGDNNCWINACCYQLQAFDF-FN----NEAWEKFKKGDVMDFVNLCY 1129 Query 1716 AYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 1775 A G GD + + + + K VL C CG+++ L+ AV + L Sbjct 1130 AATTLARGHSGDAEYLLELMLN--DYSTAKIVLAAKCG-CGEKEIVLE--RAVFKLTPLK 1184 Query 1776 YEQFKKGVQIPC----TCGKQATKY-------LVQQESPFVMMSAPPAQYELKHGTFTCA 1824 E F GV C TC + + ++ +++P M P + + Sbjct 1185 -ESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAV-------- 1235 Query 1825 SEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKP 1879 YTG Q GHY + E YC+DG + K + + + +F N T KP Sbjct 1236 --YTGTTQNGHY-MVDDIEHGYCVDG-MGIKPLKKRCYTSTLFINANVMTRAEKP 1286 Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust. Identities = 97/407 (24%), Positives = 133/407 (33%), Gaps = 95/407 (23%) Query 144 DLGDELGTDPYEDFQENWNTKHSSGVTREL-MRELNGGAYTRYVDNNFCGPDGYPL--EC 200 DL L T+P Q + +GV + ++ G YVD CG DG P+ Sbjct 71 DLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTGRGAIYVDQYMCGADGKPVIEGD 130 Query 201 IKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLA 260 KD D I+ + Y C AW T R EK QT F I+ Sbjct 131 FKDYFGDE-----------DIIEFEGEEYHC-------AWTTVRDEKPLNQQTLFTIQEI 172 Query 261 KKFDTFNGECPNFVFPLNSIIKTIQPRVEK----------KKLDGFMGRIRSVYPVASPN 310 + +N + P+ P N + + P V+K KKL G P Sbjct 173 Q----YNLDIPH-KLP-NCATRHVAPPVKKNSKIVLSEDYKKLYDIFGS-----PFMGNG 221 Query 311 ECNQMCLSTL------MKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNA 364 +C C TL ++C CG S GD+ CG K G T P +A Sbjct 222 DCLSKCFDTLHFIAATLRCP-CGSESSGVGDWTGFKTACCGLSGKVK-GVTLGDIKPGDA 279 Query 365 VVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWV 424 VV T + G F CV Y G + W Sbjct 280 VV----------------------------TSMSAGKGVKFFANCVLQYAGDVEGVSIW- 310 Query 425 PRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNIN-----IVGDFKLNEEIAIILAS 479 + + T V G EG ++ ++ K V + I GD II Sbjct 311 -KVIKTFTVDET-VCTPGFEGELNDFIKPESKSLVACSVKRAFITGDIDDAVHDCIITGK 368 Query 480 FSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQ 526 ST+ F GL +K V+ CG V AW + E+ Sbjct 369 LDLSTNLFGNV--GLLFKKTPWFVQKCGALFVD-------AWKVVEE 406 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 61/286 (21%), Positives = 107/286 (37%), Gaps = 29/286 (10%) Query 1567 TIKVFTTVDNINLHTQVVDMSMTYGQQF-GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 +I V T DN+N V TYG+Q G + DVT P G+ Sbjct 1488 SIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVI-----K 1542 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSI--KWADNNCYLATALLTL 1683 + ++ +Y D + SA +H +K+ V I K DNNC++ L L Sbjct 1543 AIDIDWQAHYGFRDAA----AFSASSH-DAYKFEVVTHSNFIVHKQTDNNCWINAICLAL 1597 Query 1684 QQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS 1743 Q+++ ++ P ++ + + F ++ GE GD E M + + Sbjct 1598 QRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDA-ELMLHKLGDLMDND 1656 Query 1744 CKRVL--NVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQE 1801 C+ ++ C C + + + V A L+ G C G + Q + Sbjct 1657 CEIIVTHTTACDKCAKVEKFVGPVVA----APLAIH----GTDETCVHGVSVNVKVTQIK 1708 Query 1802 SPFVMMS--APPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETL 1845 + S P L+ + C Y+G+ + GHY + ++ L Sbjct 1709 GTVAITSLIGPIIGEVLEATGYIC---YSGSNRNGHYTYYDNRNGL 1751 >sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 723/2189 (33%), Positives = 1123/2189 (51%), Gaps = 151/2189 (7%) Query 2263 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----L 2318 C G + Y NS+ + A C SI C CL+ D L + L+ S W+ L Sbjct 1921 CNGAVQAYKNSSFIKSAV-CGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQL 1979 Query 2319 TAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPIS 2378 + F +A + Y+ R F + ++ + L+ SYF ++ SW + ++V IS Sbjct 1980 SYFAFLAVFGNNYV---RCFLMYFVSQYLNLWLSYFG--YVEYSWFL----HVVNFESIS 2030 Query 2379 AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYA 2438 A + + K H+V C++ +C C + R TR+ +VNG ++ YV+A Sbjct 2031 AEFVIVVIVVKAVLALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHA 2087 Query 2439 NGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKN 2498 NG FCK HN+ C NCD++ +TFI DE+ RDLS K+ + TD+S V V + Sbjct 2088 NGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSD 2147 Query 2499 GSIHLY---------FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 2549 G Y +D +K + L + LD+ + GS NV Sbjct 2148 GFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV--------- 2198 Query 2550 EESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKL 2609 ++A VY+SQL+ +PI +++ L+ D+ S + +F+A N ++FNV + + Sbjct 2199 -----RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSEC 2251 Query 2610 KTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDS 2669 K L E + +L+ STF A +H+ I +T S Sbjct 2252 KNL-----DECYRACNLNVSFSTFEMAVNN------------------AHRFGILITDRS 2288 Query 2670 CNNYMLTYNK--VENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRK 2727 NN+ + K ++ D+G C+ A+ +NA+V +++W +DF +LS +K Sbjct 2289 FNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQK 2348 Query 2728 QIRSAAKKNNLPFKLTCATTRQVVNV----VTTKIALKGGK---IVNNWLKQLIKVTLVF 2780 + + + F LT ++ T ++ K G V LKQ++ + VF Sbjct 2349 VLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTESVSPKSGSGFFDVITQLKQIVILVFVF 2408 Query 2781 LFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQ 2840 +F+ L + V ++ S+E Y I G+ + T +C N + F WF Sbjct 2409 IFICG---LCSVYSVATQSYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKA 2465 Query 2841 RGGSY-TNDKACPLIAA-VITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYT 2898 + G T K+CP++ V E +P +P + + G L F V N+CY Sbjct 2466 KYGFIPTFGKSCPIVVGTVFDLENMRPIPDVPAYV--SIVGRSLVFAINAAFGVTNMCYD 2523 Query 2899 PSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMD 2958 + D CV CT G V YC ++EG+ Y L PD Y Sbjct 2524 HTGNAVSKDSYFDTCVFNTACTTLTGLGGTIV-YCAKQGLVEGAKLYSDLMPDYYYEHAS 2582 Query 2959 GSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVF 3018 G++++ P +R V T + YCR G C S+AG C +V +N++ G Sbjct 2583 GNMVKLPAIIRGLGLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGN---GYI 2639 Query 3019 CGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVV 3078 CG + N+F + + S +++ I+A + + Y ++F++ FG+ Sbjct 2640 CGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDC---- 2695 Query 3079 AFNTLLFLMSFTVLCLTPVYSFLPG--VYSVIYLYLTFYLTNDVSF--LAHIQWMVMFTP 3134 T L +M L + V F+ + +IY + +++T +++ + +++ + Sbjct 2696 ---TFLIVMIIVTLVVNNVSYFVTQNTFFMIIYAIVYYFITRKLAYPGILDAGFIIAYIN 2752 Query 3135 LVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFNGVSF-STFEEAALCTFLLNKEMY 3190 + P+++ AYI+ Y + K +V +F G F FE AA+ TF+++ Y Sbjct 2753 MAPWYVITAYILVF----LYDSLPSLFKLKVSTNLFEGDKFVGNFESAAMGTFVIDMRSY 2808 Query 3191 LKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLY 3250 + + + + Y +NKYKY++G+M YR A HL KAL D+S + +D+LY Sbjct 2809 ETIVNST--SIARIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLY 2866 Query 3251 QPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSE 3310 PP S+ S LQSG RKMA PSG VE C+V+V+ G LNGLWL D V CPRHVI S+ Sbjct 2867 TPPTVSVNST-LQSGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVI-ASD 2924 Query 3311 DMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQ 3370 NYE+ + HNF V NV L V+ + L LKV+ NP TP++KF I+ Sbjct 2925 TTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIK 2984 Query 3371 PGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMEL 3430 G++F++LACY G P VY MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL Sbjct 2985 AGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLEL 3044 Query 3431 PTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTL 3490 G H G++ EG YG + D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + +L Sbjct 3045 GNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSL 3104 Query 3491 NDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALL 3550 +N A ++ L+ D L+A+TG +V + S+ L G GRTIL L Sbjct 3105 ESYNTWAKTNSFTELSS--TDAFSMLAAKTGQSVEKLLDSIVRL-NKGFGGRTILSYGSL 3161 Query 3551 EDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLY--- 3607 DEFTP +V+RQ GV Q+ ++ I+T++ +L + L FF+Y Sbjct 3162 CDEFTPTEVIRQMYGVNLQAGKVKS-------FFYPIMTAMTILFA---FWLEFFMYTPF 3211 Query 3608 ---ENAFLPFAMGIIAM-SAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRI 3663 F+ + + + S + +KHK F F+LPS+ V N+ + S+ + Sbjct 3212 TWINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNL-FWDFSYYESL 3270 Query 3664 MTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYY 3723 + ++ +T ++ ++ ++ + + R + + +L + V Sbjct 3271 QSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKI 3330 Query 3724 GNALDQA----------ISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITG 3773 D+ ++M +I+S+T+ VV +A IV +CV P F++ Sbjct 3331 FGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIV-VCV--MPSAFVSD 3387 Query 3774 -NTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++CI +VY GY CY+G+ +NR+ +T GVY + VS E +YM + L PK Sbjct 3388 FGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPK 3447 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 N+ DA L+ KL+GVGGK IK++TVQSK++++KCT+VVLL +L ++ VES+SK W CV Sbjct 3448 NAYDAMILSAKLIGVGGKRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCV 3507 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLP 3952 LHN+I L D EK+++L++ LS D+++L E +N LQ++AS +++LP Sbjct 3508 GLHNEINLCDDPEIVLEKLLALIAFFLSKHNTCDLSELIESYFENTTILQSVASAYAALP 3567 Query 3953 SYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQM 4012 S+ A A+ E+A N S +LK+L K+ N+AKS+F+R+A++Q+KL+KMA+QA M Sbjct 3568 SWIALEKARADLEEAKKNDVSPQILKQLTKAFNIAKSDFEREASVQKKLDKMAEQAAASM 3627 Query 4013 YKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMV 4072 YK+AR+ D+++K+ SAM ++LF ML+KLD ++N II+ AR+G +PL+IIP +A +L+V Sbjct 3628 YKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIDQARNGVLPLSIIPAASATRLVV 3687 Query 4073 VIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR 4132 + P + YA A+W I +V DA+ V L E++ N NL WPL +T R Sbjct 3688 ITPSLEVFSKIRQENNVHYAGAIWTIVEVKDANGSHVHLKEVTAANELNLTWPLSITCER 3747 Query 4133 ANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLK 4192 KLQNNE+ P L++ + A T + A + G F+ A ++ +LK Sbjct 3748 ---TTKLQNNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLK 3804 Query 4193 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRL 4252 + ++ ++ I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATVRL Sbjct 3805 YVKWESNN--DIIPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRL 3862 Query 4253 QAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP 4312 QAG TE P+NS++L+ CAF+ D AKAY D + G QP+ NCVKML G G A+T Sbjct 3863 QAGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGV 3922 Query 4313 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTV 4372 EAN Q+S+GGAS C+YCRCH++HP G C KGK+VQIPT DP+ F ++N VC V Sbjct 3923 EANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVV 3981 Query 4373 CGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 CG W GC CD R M QS+LN Sbjct 3982 CGCWLNNGCMCD--RTSMQSFTVDQSYLN 4008 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/288 (24%), Positives = 123/288 (43%), Gaps = 38/288 (13%) Query 986 QTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADI 1045 + V QQ E+N+++ + ++ P+ + + P + +++ + G L + N Sbjct 1293 EKVEQQPIVEENKSSIEKEEIQ-SPKNDDLILPFYKAGKLSFYQGALDVLINF------- 1344 Query 1046 VEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVL 1105 ++P V+VNAAN LKH GGVA A++ T + S DY+ N + G + Sbjct 1345 ------LEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFF 1398 Query 1106 SGHNLAKH--CLHVVGPNVNKGEDIQLLKSAYENFNQHE-VLLAPLLSAGIFGADPIHSL 1162 N+ +H L+ VGP L + Y+ + E +L PL+S GIF Sbjct 1399 --ENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIF-------- 1448 Query 1163 RVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITESKP 1220 VR L K + D+ ++ F+ E+Q + IP + + + Sbjct 1449 -----NVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHERV 1503 Query 1221 SVEQRKQDDKKIKACV----EEVTTTLEETKFLTENLLLYIDINGNLH 1264 SV K +++K V ++VT L + + ++ IDI+ H Sbjct 1504 SVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAH 1551 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/235 (25%), Positives = 95/235 (40%), Gaps = 34/235 (14%) Query 1656 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 1715 +K +NG +K DNNC++ LQ + FN +A+ + + G+ +F L Sbjct 1075 FKTTNLNGKIILKQGDNNCWINACCYQLQAFDF-FN----NEAWEKFKKGDVMDFVNLCY 1129 Query 1716 AYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 1775 A G GD + + + + K VL C CG+++ L+ AV + L Sbjct 1130 AATTLARGHSGDAEYLLELMLN--DYSTAKIVLAAKCG-CGEKEIVLE--RAVFKLTPLK 1184 Query 1776 YEQFKKGVQIPC----TCGKQATKY-------LVQQESPFVMMSAPPAQYELKHGTFTCA 1824 E F GV C TC + + ++ +++P M P + + Sbjct 1185 -ESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAV-------- 1235 Query 1825 SEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKP 1879 YTG Q GHY + E YC+DG + K + + + +F N T KP Sbjct 1236 --YTGTTQNGHY-MVDDIEHGYCVDG-MGIKPLKKRCYTSTLFINANVMTRAEKP 1286 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 103/455 (23%), Positives = 149/455 (33%), Gaps = 96/455 (21%) Query 144 DLGDELGTDPYEDFQENWNTKHSSGVTREL-MRELNGGAYTRYVDNNFCGPDGYPL--EC 200 DL L T+P Q + +GV + ++ G YVD CG DG P+ Sbjct 71 DLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTGRGAIYVDQYMCGADGKPVIEGD 130 Query 201 IKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLA 260 KD D I+ + Y C AW T R EK QT F I+ Sbjct 131 FKDYFGDE-----------DIIEFEGEEYHC-------AWTTVRDEKPLNQQTLFTIQEI 172 Query 261 KKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVY-----PVASPNECNQM 315 + +N + P+ P N + + P V+K + +Y P +C Sbjct 173 Q----YNLDIPH-KLP-NCATRHVAPPVKKNSKIVLSEDYKKLYDIFGSPFMGNGDCLSK 226 Query 316 CLSTL------MKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIY 369 C TL ++C CG S GD+ CG K G T P +AVV Sbjct 227 CFDTLHFIAATLRCP-CGSESSGVGDWTGFKTACCGLSGKVK-GVTLGDIKPGDAVV--- 281 Query 370 CPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASA 429 T + G F CV Y G + W + Sbjct 282 -------------------------TSMSAGKGVKFFANCVLQYAGDVEGVSIW--KVIK 314 Query 430 NIGCNHTGVVGEGSEGLNDNLLEILQKEKVNIN-----IVGDFKLNEEIAIILASFSAST 484 + T V G EG ++ ++ K V + I GD II ST Sbjct 315 TFTVDET-VCTPGFEGELNDFIKPESKSLVACSVKRAFITGDIDDAVHDCIITGKLDLST 373 Query 485 SAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQ---------KSILSPLYA 535 + F GL +K V+ CG V AW + E+ K I + + Sbjct 374 NLFGNV--GLLFKKTPWFVQKCGALFVD-------AWKVVEELCGSLTLTYKQIYEVVAS 424 Query 536 FASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 570 + A +V + T N V+ L + +L Sbjct 425 LCTSAFTIVN--YKPTFVVPDNRVKDLVDKCVKVL 457 Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust. Identities = 61/286 (21%), Positives = 107/286 (37%), Gaps = 29/286 (10%) Query 1567 TIKVFTTVDNINLHTQVVDMSMTYGQQF-GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 +I V T DN+N V TYG+Q G + DVT P G+ Sbjct 1488 SIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVI-----K 1542 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSI--KWADNNCYLATALLTL 1683 + ++ +Y D + SA +H +K+ V I K DNNC++ L L Sbjct 1543 AIDIDWQAHYGFRDAAAF----SASSH-DAYKFEVVTHSNFIVHKQTDNNCWINAICLAL 1597 Query 1684 QQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS 1743 Q+++ ++ P ++ + + F ++ GE GD E M + + Sbjct 1598 QRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDA-ELMLHKLGDLMDND 1656 Query 1744 CKRVL--NVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQE 1801 C+ ++ C C + + + V A L+ G C G + Q + Sbjct 1657 CEIIVTHTTACDKCAKVEKFVGPVVA----APLAIH----GTDETCVHGVSVNVKVTQIK 1708 Query 1802 SPFVMMS--APPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETL 1845 + S P L+ + C Y+G+ + GHY + ++ L Sbjct 1709 GTVAITSLIGPIIGEVLEATGYIC---YSGSNRNGHYTYYDNRNGL 1751 >sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 1122 bits (2902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 727/2235 (33%), Positives = 1139/2235 (51%), Gaps = 151/2235 (7%) Query 2214 SFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNS 2273 + NY++ N L I LLL + L Y ++ V+ C+G + Y NS Sbjct 1903 TLNYVRQLNKPALWRYIKLVLLL-IALYHFFYLFVSIPVVHK-----LACSGSVQAYSNS 1956 Query 2274 TNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----LTAFGLVAEWFL 2329 + V + C SI C CL+ D L + L+ S W+ L+ F +A + Sbjct 1957 SFVK-SEVCGNSILCKACLASYDELADFDHLQVSWDYKSDPLWNRVIQLSYFIFLAVFGN 2015 Query 2330 AYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFAS 2389 Y+ ++V + + L+ SYF ++ SW + ++V IS + + Sbjct 2016 NYVRCLLMYFV---SQYLNLWLSYFG--YVKYSWFL----HVVNFESISVEFVIIVVVFK 2066 Query 2390 FYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHN 2449 K H+ CN+ +C C K R TR+ +VNG ++ YV+ANG CK HN Sbjct 2067 AVLALK---HIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGKLCKKHN 2123 Query 2450 WNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY----- 2504 + C NCD++ TFI DE+ RDLS K+ + TD+S V V +G Y Sbjct 2124 FYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYRFYVGEEF 2183 Query 2505 ----FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVY 2560 +D +K + L LD+ N GS +S ++ VY Sbjct 2184 TAYDYDVKHKKYSSQEVLKTMFLLDDFIVYNPSGS--------------SLASVRNVCVY 2229 Query 2561 YSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAEL 2620 +SQL+ +PI +++ L+ D+ S + +F+A N ++FNV + + K L E Sbjct 2230 FSQLIGRPIKIVNSELLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL-----EEC 2282 Query 2621 AKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNK- 2679 K +LD STF A +H+ I +T S NN+ + K Sbjct 2283 YKLCNLDVTFSTFEMAINN------------------AHRFGILITDRSFNNFWPSKIKP 2324 Query 2680 -VENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNL 2738 ++ D+G C+ A+ +NA+V +++W +DF +LS +K + + + Sbjct 2325 GSSGVSAMDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEEGV 2384 Query 2739 PFKLTCATTRQVVNV----VTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVH 2794 F LT ++ T ++ K G + LKQL ++ + ++ L + Sbjct 2385 NFSLTFNAVGSDEDLPYERFTESVSAKSGSGFFDVLKQLKQLFWCLVLFITLYGLCSVYS 2444 Query 2795 VMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSY-TNDKACPL 2853 V ++ S+E Y I GV + + C N + F WF + G T DK+CP+ Sbjct 2445 VATQSYIDSAEGYDYMVIKNGVVQSFDDSINCVHNTYKGFAVWFKAKHGFVPTFDKSCPI 2504 Query 2854 IAAVITREVGFV--VPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATS 2911 + + ++G + +P +P + G L F V N+CY + + Sbjct 2505 VLGTVF-DLGNMRPIPDVPAYVALV--GRSLVFAINAAFGVTNVCYDHTGAAVSKNSYFD 2561 Query 2912 ACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEG 2971 CV + CT G V YC ++EG+ Y L PD Y G++++ P Sbjct 2562 TCVFNSACTTLTGIGGTVV-YCAKQGLVEGAKLYSELLPDYYYEHASGNMVKIPAIIRSF 2620 Query 2972 SVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMF 3031 +R V T + YCR G C S+AG C +V + ++ G CG + N+F Sbjct 2621 GLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVYDKEFG---DGYICGSSTLGFFKNVF 2677 Query 3032 TPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTV 3091 + + S +++A ++A + + Y ++F++ FG+ TLL +M Sbjct 2678 ALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDC-------TLLVVMIIVT 2730 Query 3092 LCLTPVYSFLPG--VYSVIYLYLTFYLTNDVSFLAHIQ--WMVMFTPLVPFWITIAYIIC 3147 L + V F+ + ++Y + ++ T +++ + +++ + + P+++ + YI+ Sbjct 2731 LVVNNVSYFVTQNTFFMIVYAIIYYFTTRKLAYPGVLDAGFIIAYLNMAPWYVLVLYIMV 2790 Query 3148 ISTKHFYWFFSNYLKRRV---VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQ 3203 Y + K +V +F G F +FE AA+ TF+++ Y L + L + Sbjct 2791 F----LYDSLPSLFKLKVTTNLFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDR 2844 Query 3204 YNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQ 3263 Y +NKYKY++G+M YR A HL KAL D+S S +D+LY PP S+ S LQ Sbjct 2845 IKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVSRNDMLYTPPTVSVNST-LQ 2903 Query 3264 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIR 3323 SG RKMA PSG VE C+V+V G LNGLWL D V CPRHVI + + NYE+ L Sbjct 2904 SGLRKMAQPSGVVEPCIVRVAYGNNVLNGLWLGDEVICPRHVIASDTSRV-INYENELSS 2962 Query 3324 KSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNG 3383 HNF + N L V+ + L LKV+ NP TP++KF ++PG++F++LACY G Sbjct 2963 VRLHNFSIAKNNAFLGVVSAKYKGVNLVLKVNQVNPNTPEHKFKSVRPGESFNILACYEG 3022 Query 3384 SPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGN 3443 P VY MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL G H G++LEG Sbjct 3023 CPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGE 3082 Query 3444 FYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3503 YG + D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + TL +N A ++ Sbjct 3083 MYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMTLESYNAWAKTNSFT 3142 Query 3504 PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC 3563 + D L+A+TG +V + + L G GRTIL L DEFTP +V+RQ Sbjct 3143 EIVS--TDAFNMLAAKTGYSVEKLLECIVRL-NKGFGGRTILSYGSLCDEFTPTEVIRQM 3199 Query 3564 SGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLY------ENAFLPFAMG 3617 GV QS ++I ++T++ +L + L FF+Y F+ + Sbjct 3200 YGVNLQSGKVKSI-------FYPMMTAIAILFA---FWLEFFMYTPFTWINPTFVSVVLA 3249 Query 3618 IIAM-SAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSG 3676 I + S + +KHK F F++PS+ N+V+ ++ + ++ V+T+ Sbjct 3250 ITTLVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVW-DMTYYESLQVLVENVNTTFLP 3308 Query 3677 FKLKDCVMYASAVVLLILMTAR------TVYDDGARRVWTLMNVLTLVYKVYYGNALDQ- 3729 ++ ++ VV+ ++ T R + + A ++ + N++ L+ + D Sbjct 3309 VDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHF 3368 Query 3730 ---AISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFL 3786 ++M ++IS+T+ VV +A IV ++ P F ++C+ ++Y Sbjct 3369 LLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVVYVMQ--PAFVQDFGFVKCVSIIYMAC 3426 Query 3787 GYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLG 3846 GY CY+G+ +NR+ +T GVY + VS E +YM + L PK + DA L+ KL+G Sbjct 3427 GYLFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMG 3486 Query 3847 VGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTE 3906 +GG IK++TVQSK++++KCT+VVLL +L ++ VES+SK W CV LHN+I L D Sbjct 3487 IGGGRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPDA 3546 Query 3907 AFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQ 3966 EK+++L++ LS D++ L E +N LQ++AS +++LPS+ A+ A+ E+ Sbjct 3547 VLEKLLALIAFFLSKHNTCDLSDLIESYFENTTILQSVASAYAALPSWIAYEKARADLEE 3606 Query 3967 AVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVT 4026 A N S +LK+L K+ N+AKSEF+R+A++Q+KL+KMA+QA MYK+AR+ D+++K+ Sbjct 3607 AKKNDVSPQLLKQLTKACNIAKSEFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIV 3666 Query 4027 SAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDG 4086 SAM ++LF ML+KLD ++N II AR+G +PL+IIP +A +L+VV P+ Sbjct 3667 SAMHSLLFGMLKKLDMSSVNTIIEQARNGVLPLSIIPAASATRLIVVTPNLEVLSKVRQE 3726 Query 4087 TTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSP 4146 YA A+W I +V DA+ V L E++ N N+ WPL +T R KLQNNE+ P Sbjct 3727 NNVHYAGAIWSIVEVKDANGAQVHLKEVTAANELNITWPLSITCER---TTKLQNNEILP 3783 Query 4147 VALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIY 4206 L++ + A T + A + G F+ A ++ +LK+ ++ ++ I Sbjct 3784 GKLKEKAVKASATIDGDAYGSGKALMASEGGKSFIYAFIASDSNLKYVKWESNN--DVIP 3841 Query 4207 TELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTV 4266 ELE P RF D GP+VKYLYF+K LN L RG VLG + ATVRLQAG TE P+NS + Sbjct 3842 IELEAPLRFYVDGVNGPEVKYLYFVKSLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSGL 3901 Query 4267 LSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASC 4326 L+ CAFA D AKAY D + G QP+TNCVKML G G AIT E+N Q+S+GGAS Sbjct 3902 LTLCAFAPDPAKAYVDAVKRGMQPVTNCVKMLSNGAGNGMAITNGVESNTQQDSYGGASV 3961 Query 4327 CLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQL 4386 C+YCRCH++HP G C KGK+VQ+PT DP+ F ++N VC VCG W GC CD Sbjct 3962 CIYCRCHVEHPAIDGLCRFKGKFVQVPTG-TQDPIRFCIENEVCVVCGCWLTNGCMCD-- 4018 Query 4387 REPMLQSADAQSFLN 4401 R + + QS+LN Sbjct 4019 RTSIQGTTIDQSYLN 4033 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/231 (24%), Positives = 105/231 (45%), Gaps = 27/231 (12%) Query 1052 VKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA 1111 ++P V+VNAAN L+H GGVA A++ T + S +Y+ ++ + G + + N+ Sbjct 1356 LEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLF--ENVL 1413 Query 1112 KH--CLHVVGPNVNKGEDIQLLKSAYENFNQHE-VLLAPLLSAGIFGADPIHSLRVCVDT 1168 +H L+ VGP L + Y+ + + +L PL+S GIF Sbjct 1414 EHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIF-------------K 1460 Query 1169 VRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITESKPSVEQRK 1226 V+ V L K + D+ ++ F+ E+ + IP + + + + + SV K Sbjct 1461 VKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNGTIPIKVTEDTVNQKRVSVALDK 1520 Query 1227 QDDKKIKACV----EEVTTTLEETKFLTENLLLYIDINGNLH---PDSATL 1270 +++K V ++VT L + E ++ +D++ N + P++A Sbjct 1521 TYGEQLKGTVVIKDKDVTNQLPSVSDVGEKVVKALDVDWNAYYGFPNAAAF 1571 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 49/198 (25%), Positives = 80/198 (40%), Gaps = 14/198 (7%) Query 1567 TIKVFTTVDNINLHTQVVDMSMTYGQQF-GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 TI + T D +N V + TYG+Q G + DVT P S G+ Sbjct 1499 TIPIKVTEDTVNQKRVSVALDKTYGEQLKGTVVIKDKDVTNQLPSVSDVGEKVV-----K 1553 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQV--NGLTSIKWADNNCYLATALLTL 1683 L V+ YY + + SA +H +++ V N K DNNC++ L L Sbjct 1554 ALDVDWNAYYGFPNAAAF----SASSH-DAYEFDVVTHNNFIVHKQTDNNCWVNAICLAL 1608 Query 1684 QQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS 1743 Q+++ + P ++ + + A F ++ T G+ GD T+ L + DS Sbjct 1609 QRLKPTWKFPGVKSLWDAFLTRKTAGFVHMLYHISGLTKGQPGDAELTLHKLVDLMSSDS 1668 Query 1744 CKRVLN-VVCKTCGQQQT 1760 V + C C + +T Sbjct 1669 AVTVTHTTACDKCAKVET 1686 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 71/277 (26%), Positives = 109/277 (39%), Gaps = 26/277 (9%) Query 1656 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 1715 +K +NG +K DNNC++ LQ + FN L D + + +FC L Sbjct 1099 FKTTNLNGKIILKQQDNNCWINACCYQLQAFDF-FNHD-LWDGFKKDDVMPFVDFCYAAL 1156 Query 1716 AYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLS 1775 G+ + ETM + A K L+ C CG ++ L E ++ T Sbjct 1157 TLKQGDSGDAEYLLETMLNDYSTA-----KVTLSAKCG-CGVKEIVL---ERTVFKLTPL 1207 Query 1776 YEQFKKGVQIPCTCGKQATKYLVQQESPFVM----MSAPPAQYELKHGTFTCASEYTGNY 1831 +FK GV C V+ FV P +Q+ + T T + YTG Sbjct 1208 RNEFKYGVCGDCKQINMCKFASVEGSGVFVHDRIEKQTPVSQFIV---TPTMHAVYTGTT 1264 Query 1832 QCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYT----TTIKPVTYKLDGV 1887 Q GHY I YC+DG + K ++K + +F N T T ++P D Sbjct 1265 QSGHY-MIEDCIHDYCVDG-MGIKPRKHKFYTSTLFLNANVMTAKSKTMVEPPVPVEDKC 1322 Query 1888 VCTEIDPK--LDNYYKKDNSYFTEQPIDLVPNQPYPN 1922 V PK + +YK F + +D++ N P+ Sbjct 1323 VEDCQSPKDLILPFYKAGKVSFYQGDLDVLINFLEPD 1359 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 83/234 (35%), Gaps = 34/234 (15%) Query 144 DLGDELGTDPYEDFQENWNTKHSSGVTREL-MRELNGGAYTRYVDNNFCGPDGYPLECIK 202 DL L T+P Q + +GV + ++ G YVD CG DG P+ Sbjct 71 DLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKFARTGNGAIYVDQYMCGADGKPV---- 126 Query 203 DLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKK 262 E D+ + V E+ AW T R EK QT I+ + Sbjct 127 -----------IEGEFKDYFGDE-DVIIYEGEEYHCAWLTVRDEKPLWQQTLLTIREIQ- 173 Query 263 FDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPV-ASPNECNQMCLSTLM 321 +N + P+ P N I+ + P V+K R +Y + SP N L+T Sbjct 174 ---YNLDIPH-KLP-NCAIREVAPPVKKNSKVVLSEEYRKLYDIFGSPFMGNGDSLNTCF 228 Query 322 KCDH---------CGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVV 366 H CG S GD+ CG K G T P +A+V Sbjct 229 DSLHFIAATLKCPCGAESSGVGDWTGFKTACCGLHGKVK-GVTLGAVKPGDAIV 281 >sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=1a PE=3 SV=1 Length=3951 Score = 1118 bits (2891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 788/2443 (32%), Positives = 1219/2443 (50%), Gaps = 239/2443 (10%) Query 2080 ANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIA 2139 A N +K+ +++G + ++ + KPN L R+ + A G + V + I Sbjct 1626 AENFVKMGDKIGGVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIG 1680 Query 2140 NYAKPFLNKVVSTTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRI 2190 A +KV +T + +C P F TL+ L F +++ + Sbjct 1681 KAATFIADKVGGGVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSV 1740 Query 2191 KASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL 2250 AS T + K + ++ +I+WF+ S ++++ + Sbjct 1741 VASYKTVLCKVVLATL----------------------LIVWFVYTS---NPVMFTGIRV 1775 Query 2251 GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT 2310 + L S C Y++ +S +V YC C VCL DSL Y +++ Sbjct 1776 ---LDFLFEGSLCGPYKDYGKDSFDVL--RYCADDFICRVCLHDKDSLHLYKHAYSVEQV 1830 Query 2311 ISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLI 2368 A G + W Y++F F V G I Y + + NS ++ Sbjct 1831 YKD-----AASGFIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTG 1880 Query 2369 INLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVEC 2423 + + + + + F + +Y W Y VH + C TC +C + R+ R E Sbjct 1881 VCFLDWF-VQTVFSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEV 1939 Query 2424 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 2483 + +V G ++ +VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + P Sbjct 1940 SVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKP 1999 Query 2484 TDQSSYIVDSVTVKNGSIHLYFDKAGQ-KTYERHSLSHFVNLDNLR-ANNTKGSLPINVI 2541 T + ++VD + + ++L + A K ++ F D L+ A K +L I Sbjct 2000 TAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQI 2059 Query 2542 VFDGKSKCEESSA------KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYV 2595 DG C SA K+A++YY+Q +C+PIL+LDQAL ++ V+ Sbjct 2060 SNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYE------QLVVE------ 2107 Query 2596 NTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECL 2655 P+ K +++ + L+ +S+D + + + + S + ++ V+ Sbjct 2108 ---------PVSK--SVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMA 2156 Query 2656 KLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWN 2714 H D++ TGD N + +Y +TPRD G I+ A N +V + + +W Sbjct 2157 IFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWK 2214 Query 2715 VKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL--KGGKIVN---NW 2769 + + LS+ K + SA K+ + F +T + +QV+ T K+ + K G IV+ Sbjct 2215 FSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKC 2274 Query 2770 LKQLIKVTLVF--LFVA---AIFYLITPVHVMSKHTDFSS--EIIGYKAIDGGVTRDIAS 2822 K K L+F LF A +Y+ + D +S + G+K ID GV R+I Sbjct 2275 FKSYFKWLLIFYILFTACCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVP 2334 Query 2823 TDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNG-DF 2881 DTCF+NK +FD ++ G Y N + CP++ AVI + G V G+PG + +G F Sbjct 2335 EDTCFSNKFVNFDAFW---GRPYDNSRNCPIVTAVIDGD-GTVATGVPGFVSWVMDGVMF 2390 Query 2882 LH---------FLPRVFSA--VGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPV 2930 +H ++P F+ VG YT +I F TS + +A C ++ AS P Sbjct 2391 IHMTQTERKPWYIPTWFNREIVG---YTQDSIITEGSFYTSIALFSARC-LYLTASNTPQ 2446 Query 2931 PYCYD-TNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTC 2989 YC++ N G++ + S+ P Y +G + P L V DS YCR C Sbjct 2447 LYCFNGDNDAPGALPFGSIIPHRVYFQPNGVRLIVPQQILHTPYVVKFVSDS-YCRGSVC 2505 Query 2990 ERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVA 3049 E + G CVS + +WVL ND Y S PGVFCG L+ +M + + +I + Sbjct 2506 EYTRPGYCVSLNPQWVLFNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLAT 2564 Query 3050 GGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIY 3109 ++ +VV + ++F+ F Y+ V L+++++ +LC+ S L + V+Y Sbjct 2565 MFLILVVVVLIFAMVIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLY 2624 Query 3110 LYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT---IAYIICISTKHFYWFFSNYLKRRVV 3166 Y + + + + H + F +VP W+ + +II + T F W + R + Sbjct 2625 CYASLVTSRNTVIIMHCWLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKL 2684 Query 3167 FNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTS 3225 ++G F ++ AA TF++ ++KL +++ ++ YL+ Y + KY+SG Sbjct 2685 YDGNEFVGNYDLAAKSTFVIRGSEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQD 2741 Query 3226 YREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTC 3285 Y +A LA AL+ + NSG +++Y PP+ SI + LQSGF+K+ PS VE C+V V+ Sbjct 2742 YLQACRAWLAYALDQYRNSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSY 2801 Query 3286 GTTTLNGLWLDDVVYCPRHVICT-SEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRVIGH 3343 LNGLWL D +YCPRHV+ S D N D+L +NH F V + V L V+ Sbjct 2802 RGNNLNGLWLGDTIYCPRHVLGKFSGDQWN----DVLNLANNHEFEVTTQHGVTLNVVSR 2857 Query 3344 SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSF 3403 ++ VL L+ AN +TPKYKF++ G +F++ Y G+ G+Y MR N TI+ SF Sbjct 2858 RLKGAVLILQTAVANAETPKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASF 2917 Query 3404 LNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI 3463 L G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G FYG +VD + AQ D + Sbjct 2918 LAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLV 2977 Query 3464 TVNVLAWLYAAVINGD-------RWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPL 3516 T N++AWLYAA+I+ +W L T +++D+N A + P + + L Sbjct 2978 TNNIVAWLYAAIISVKESSFSLPKW-LESTTVSVDDYNKWAGDNGFTPFSTSTA--ITKL 3034 Query 3517 SAQTGIAVLDMCASLKELL--QNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKR 3574 SA TG+ D+C L+ ++ + G ILG EDE TP V Q GV QS+ R Sbjct 3035 SAITGV---DVCKLLRTIMVKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSFVR 3091 Query 3575 TIKGTHHW---LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKH 3631 + W +L L L +V T L F++Y L A+ I+ + VKH Sbjct 3092 KAT-SWFWSRCVLACFLFVLCAIVLFTAVPLKFYVYAAVILLMAVLFISFT------VKH 3144 Query 3632 KHAFLCLFLLPSLATV-----AYFNMVY--MPASWVMRIMTWLDMV--DTSL-------- 3674 A++ FLLP+L TV A +Y + + V+ + W D V DT + Sbjct 3145 VMAYMDTFLLPTLITVIIGVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMFLPLV 3204 Query 3675 --SGFK-LKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAI 3731 + FK ++ C M + LL+L + ++T N LT + GN Sbjct 3205 LYTAFKCVQGCYMNSFNTSLLMLYQFVKL----GFVIYTSSNTLTAYTE---GN------ 3251 Query 3732 SMWALII-----SVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFL 3786 W L +V +N S +F+ + +M + YC ++ L +M V C + Sbjct 3252 --WELFFELVHTTVLANVSSNSLIGLFVFKCAKWM-LYYCNATYLNNYVLMAVM-VNC-I 3306 Query 3787 GYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLG 3846 G+ CTCYFGL+ +N+ F LTLG Y++ VS ++RYM + PPK + F NI + G Sbjct 3307 GWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQG 3366 Query 3847 VGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTE 3906 +GG + +ATVQ+K+SDVKCT+VVL+ +L +L VE++SK+ V+LHN IL + D E Sbjct 3367 IGGDRVLPIATVQAKLSDVKCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGE 3426 Query 3907 AFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQ 3966 + ++ +L L + +D+++ C+++L LQ++ EFS +PSYA + A+ YE+ Sbjct 3427 CMDNLLGMLITLFCIDSTIDLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEK 3486 Query 3967 AVAN----GDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKR 4022 + + G ++ L +K+ N+AKS FDRD A+Q+KL+ MA++AMT MYK+AR D+R Sbjct 3487 VLVDSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRR 3546 Query 4023 AKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKN 4082 AK+ S++ +LF+ML+K+D++ LN + + A G VPL +P+ + KL +VIPD T+ Sbjct 3547 AKLVSSLHALLFSMLKKIDSEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVK 3606 Query 4083 TCDGTTFTYASALWEIQQVVDADSKIVQLSEISMD-----NSPNLAWPLIVTALRANS-- 4135 +G TY++ +W I V+DAD + + + N+AWPL V R Sbjct 3607 CVEGVHVTYSTVVWNIDTVIDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNK 3666 Query 4136 -AVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 V LQNNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A Sbjct 3667 VDVVLQNNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVA 3725 Query 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 F G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ+ Sbjct 3726 SFLNEAGN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQS 3784 Query 4255 -GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3785 KGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPS 3844 Query 4314 ANMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTV 4369 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N V Sbjct 3845 PTPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKV 3903 Query 4370 CTVCGMWKGYGCSCDQLREPM--LQSADAQS-----FLNGFAV 4405 CTVC W GYGC CD LR+P +QS S +LNG+ V Sbjct 3904 CTVCQCWIGYGCQCDSLRQPKSSVQSVAGASDFDKNYLNGYGV 3946 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 15/243 (6%) Query 1570 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 1629 ++ T D + + V+ + GQ FG Y V + + + YV D ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYAKNKIV--FTADDVEDKEILYVPTTDKSI-- 1234 Query 1630 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 1689 EYY ++ Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1235 --LEYYGLDAQKYV-IYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIR 1289 Query 1690 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 1748 F L +A+ + G+ +F A A C VG+ D ++ L +H + D L Sbjct 1290 FK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLK 1348 Query 1749 -NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM 1806 V C CG + L+G+EA + + + FK TCG T +++ P+++ Sbjct 1349 KRVSC-NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLL 1407 Query 1807 MSA 1809 + A Sbjct 1408 LFA 1410 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%) Query 985 QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ---TIEVNSFSGYLKLTDNVYIK 1041 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 971 EEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVV 1026 Query 1042 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 1101 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1027 IAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ--- 1080 Query 1102 SCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADP 1158 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD- 1139 Query 1159 IHSLRVCVDTVR 1170 ++ +D +R Sbjct 1140 ---FKMSIDAMR 1148 >sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=1a PE=1 SV=1 Length=3951 Score = 1118 bits (2891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 788/2443 (32%), Positives = 1219/2443 (50%), Gaps = 239/2443 (10%) Query 2080 ANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIA 2139 A N +K+ +++G + ++ + KPN L R+ + A G + V + I Sbjct 1626 AENFVKMGDKIGGVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIG 1680 Query 2140 NYAKPFLNKVVSTTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRI 2190 A +KV +T + +C P F TL+ L F +++ + Sbjct 1681 KAATFIADKVGGGVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSV 1740 Query 2191 KASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL 2250 AS T + K + ++ +I+WF+ S ++++ + Sbjct 1741 VASYKTVLCKVVLATL----------------------LIVWFVYTS---NPVMFTGIRV 1775 Query 2251 GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT 2310 + L S C Y++ +S +V YC C VCL DSL Y +++ Sbjct 1776 ---LDFLFEGSLCGPYKDYGKDSFDVL--RYCADDFICRVCLHDKDSLHLYKHAYSVEQV 1830 Query 2311 ISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLI 2368 A G + W Y++F F V G I Y + + NS ++ Sbjct 1831 YKD-----AASGFIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTG 1880 Query 2369 INLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVEC 2423 + + + + + F + +Y W Y VH + C TC +C + R+ R E Sbjct 1881 VCFLDWF-VQTVFSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEV 1939 Query 2424 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 2483 + +V G ++ +VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + P Sbjct 1940 SVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKP 1999 Query 2484 TDQSSYIVDSVTVKNGSIHLYFDKAGQ-KTYERHSLSHFVNLDNLR-ANNTKGSLPINVI 2541 T + ++VD + + ++L + A K ++ F D L+ A K +L I Sbjct 2000 TAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQI 2059 Query 2542 VFDGKSKCEESSA------KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYV 2595 DG C SA K+A++YY+Q +C+PIL+LDQAL ++ V+ Sbjct 2060 SNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYE------QLVVE------ 2107 Query 2596 NTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECL 2655 P+ K +++ + L+ +S+D + + + + S + ++ V+ Sbjct 2108 ---------PVSK--SVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMA 2156 Query 2656 KLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWN 2714 H D++ TGD N + +Y +TPRD G I+ A N +V + + +W Sbjct 2157 IFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWK 2214 Query 2715 VKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL--KGGKIVN---NW 2769 + + LS+ K + SA K+ + F +T + +QV+ T K+ + K G IV+ Sbjct 2215 FSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKC 2274 Query 2770 LKQLIKVTLVF--LFVA---AIFYLITPVHVMSKHTDFSS--EIIGYKAIDGGVTRDIAS 2822 K K L+F LF A +Y+ + D +S + G+K ID GV R+I Sbjct 2275 FKSYFKWLLIFYILFTACCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVP 2334 Query 2823 TDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNG-DF 2881 DTCF+NK +FD ++ G Y N + CP++ AVI + G V G+PG + +G F Sbjct 2335 EDTCFSNKFVNFDAFW---GRPYDNSRNCPIVTAVIDGD-GTVATGVPGFVSWVMDGVMF 2390 Query 2882 LH---------FLPRVFSA--VGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPV 2930 +H ++P F+ VG YT +I F TS + +A C ++ AS P Sbjct 2391 IHMTQTERKPWYIPTWFNREIVG---YTQDSIITEGSFYTSIALFSARC-LYLTASNTPQ 2446 Query 2931 PYCYD-TNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTC 2989 YC++ N G++ + S+ P Y +G + P L V DS YCR C Sbjct 2447 LYCFNGDNDAPGALPFGSIIPHRVYFQPNGVRLIVPQQILHTPYVVKFVSDS-YCRGSVC 2505 Query 2990 ERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVA 3049 E + G CVS + +WVL ND Y S PGVFCG L+ +M + + +I + Sbjct 2506 EYTRPGYCVSLNPQWVLFNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLAT 2564 Query 3050 GGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIY 3109 ++ +VV + ++F+ F Y+ V L+++++ +LC+ S L + V+Y Sbjct 2565 MFLILVVVVLIFAMVIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLY 2624 Query 3110 LYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT---IAYIICISTKHFYWFFSNYLKRRVV 3166 Y + + + + H + F +VP W+ + +II + T F W + R + Sbjct 2625 CYASLVTSRNTVIIMHCWLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKL 2684 Query 3167 FNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTS 3225 ++G F ++ AA TF++ ++KL +++ ++ YL+ Y + KY+SG Sbjct 2685 YDGNEFVGNYDLAAKSTFVIRGSEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQD 2741 Query 3226 YREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTC 3285 Y +A LA AL+ + NSG +++Y PP+ SI + LQSGF+K+ PS VE C+V V+ Sbjct 2742 YLQACRAWLAYALDQYRNSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSY 2801 Query 3286 GTTTLNGLWLDDVVYCPRHVICT-SEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRVIGH 3343 LNGLWL D +YCPRHV+ S D N D+L +NH F V + V L V+ Sbjct 2802 RGNNLNGLWLGDTIYCPRHVLGKFSGDQWN----DVLNLANNHEFEVTTQHGVTLNVVSR 2857 Query 3344 SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSF 3403 ++ VL L+ AN +TPKYKF++ G +F++ Y G+ G+Y MR N TI+ SF Sbjct 2858 RLKGAVLILQTAVANAETPKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASF 2917 Query 3404 LNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI 3463 L G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G FYG +VD + AQ D + Sbjct 2918 LAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLV 2977 Query 3464 TVNVLAWLYAAVINGD-------RWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPL 3516 T N++AWLYAA+I+ +W L T +++D+N A + P + + L Sbjct 2978 TNNIVAWLYAAIISVKESSFSLPKW-LESTTVSVDDYNKWAGDNGFTPFSTSTA--ITKL 3034 Query 3517 SAQTGIAVLDMCASLKELL--QNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKR 3574 SA TG+ D+C L+ ++ + G ILG EDE TP V Q GV QS+ R Sbjct 3035 SAITGV---DVCKLLRTIMVKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSFVR 3091 Query 3575 TIKGTHHW---LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKH 3631 + W +L L L +V T L F++Y L A+ I+ + VKH Sbjct 3092 KAT-SWFWSRCVLACFLFVLCAIVLFTAVPLKFYVYAAVILLMAVLFISFT------VKH 3144 Query 3632 KHAFLCLFLLPSLATV-----AYFNMVY--MPASWVMRIMTWLDMV--DTSL-------- 3674 A++ FLLP+L TV A +Y + + V+ + W D V DT + Sbjct 3145 VMAYMDTFLLPTLITVIIGVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMFLPLV 3204 Query 3675 --SGFK-LKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAI 3731 + FK ++ C M + LL+L + ++T N LT + GN Sbjct 3205 LYTAFKCVQGCYMNSFNTSLLMLYQFVKL----GFVIYTSSNTLTAYTE---GN------ 3251 Query 3732 SMWALII-----SVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFL 3786 W L +V +N S +F+ + +M + YC ++ L +M V C + Sbjct 3252 --WELFFELVHTTVLANVSSNSLIGLFVFKCAKWM-LYYCNATYLNNYVLMAVM-VNC-I 3306 Query 3787 GYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLG 3846 G+ CTCYFGL+ +N+ F LTLG Y++ VS ++RYM + PPK + F NI + G Sbjct 3307 GWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQG 3366 Query 3847 VGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTE 3906 +GG + +ATVQ+K+SDVKCT+VVL+ +L +L VE++SK+ V+LHN IL + D E Sbjct 3367 IGGDRVLPIATVQAKLSDVKCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGE 3426 Query 3907 AFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQ 3966 + ++ +L L + +D+++ C+++L LQ++ EFS +PSYA + A+ YE+ Sbjct 3427 CMDNLLGMLITLFCIDSTIDLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEK 3486 Query 3967 AVAN----GDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKR 4022 + + G ++ L +K+ N+AKS FDRD A+Q+KL+ MA++AMT MYK+AR D+R Sbjct 3487 VLVDSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRR 3546 Query 4023 AKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKN 4082 AK+ S++ +LF+ML+K+D++ LN + + A G VPL +P+ + KL +VIPD T+ Sbjct 3547 AKLVSSLHALLFSMLKKIDSEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVK 3606 Query 4083 TCDGTTFTYASALWEIQQVVDADSKIVQLSEISMD-----NSPNLAWPLIVTALRANS-- 4135 +G TY++ +W I V+DAD + + + N+AWPL V R Sbjct 3607 CVEGVHVTYSTVVWNIDTVIDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNK 3666 Query 4136 -AVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 V LQNNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A Sbjct 3667 VDVVLQNNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVA 3725 Query 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 F G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ+ Sbjct 3726 SFLNEAGN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQS 3784 Query 4255 -GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3785 KGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPS 3844 Query 4314 ANMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTV 4369 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N V Sbjct 3845 PTPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKV 3903 Query 4370 CTVCGMWKGYGCSCDQLREPM--LQSADAQS-----FLNGFAV 4405 CTVC W GYGC CD LR+P +QS S +LNG+ V Sbjct 3904 CTVCQCWIGYGCQCDSLRQPKSSVQSVAGASDFDKNYLNGYGV 3946 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 15/243 (6%) Query 1570 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 1629 ++ T D + + V+ + GQ FG Y V + + + YV D ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYAKNKIV--FTADDVEDKEILYVPTTDKSI-- 1234 Query 1630 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 1689 EYY ++ Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1235 --LEYYGLDAQKYV-IYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIR 1289 Query 1690 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 1748 F L +A+ + G+ +F A A C VG+ D ++ L +H + D L Sbjct 1290 FK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLK 1348 Query 1749 -NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM 1806 V C CG + L+G+EA + + + FK TCG T +++ P+++ Sbjct 1349 KRVSC-NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLL 1407 Query 1807 MSA 1809 + A Sbjct 1408 LFA 1410 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%) Query 985 QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ---TIEVNSFSGYLKLTDNVYIK 1041 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 971 EEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVV 1026 Query 1042 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 1101 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1027 IAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ--- 1080 Query 1102 SCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADP 1158 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD- 1139 Query 1159 IHSLRVCVDTVR 1170 ++ +D +R Sbjct 1140 ---FKMSIDAMR 1148 >sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=1a PE=1 SV=1 Length=3953 Score = 1115 bits (2884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 757/2283 (33%), Positives = 1156/2283 (51%), Gaps = 199/2283 (9%) Query 2229 IIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPC 2288 +I+WF+ S ++++ + + L S C Y + +S +V YC G C Sbjct 1759 LIVWFIYTS---NPVVFTGIRV---LDFLFEGSLCGPYNDYGKDSFDVL--RYCAGDFTC 1810 Query 2289 SVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAI 2346 VCL DSL Y +++ A G+ W Y++F F V G I Sbjct 1811 RVCLHDRDSLHLYKHAYSVEQIYKD-----AASGINFNWNWLYLVFLILFVKPVAGFVII 1865 Query 2347 MQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVV 2401 Y + + +S ++ + + + + + F + +Y W Y VH + Sbjct 1866 -----CYCVKYLVLSSTVLQTGVGFLDWF-VKTVFTHFNFMGAGFYFWLFYKIYVQVHHI 1919 Query 2402 DGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAG 2461 C TC +C + R+ R E + +V G ++ +VY N G FCK HNW C NCD + Sbjct 1920 LYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQ 1979 Query 2462 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKA-GQKTYERHSLSH 2520 +TF+S EVA +LS + KR + PT + ++V V + ++L + A K ++ Sbjct 1980 NTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVDDFVNLKYKAAIPGKDNASSAVKC 2039 Query 2521 FVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESSA------KSASVYYSQLMCQPILLLD 2573 F D L+ A K +L I DG C SA K+A+VYY+Q +C+PIL+LD Sbjct 2040 FSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKNAAVYYAQYLCKPILILD 2099 Query 2574 QALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTF 2633 QAL + P+ K +++ + L+ +S+D + Sbjct 2100 QAL---------------------YEQLIVEPVSK--SVIDKVCSILSNIISVDTAALNY 2136 Query 2634 ISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACI 2692 + + + S + ++ V+ H ++E TGD N + +Y + +TPRD G I Sbjct 2137 KAGTLRDALLSITKDEEAVDMAIFCHNHEVEYTGDGFTNVIPSYGMDTDKLTPRDRGFLI 2196 Query 2693 DCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVN 2752 + A N +V + + +W D + LS+ K + SA K+ F +T + +QV++ Sbjct 2197 NADASIANLRVKNAPPV--VWKFSDLIKLSDSCLKYLISATVKSGGRFFITKSGAKQVIS 2254 Query 2753 VVTTKIAL--KGGKIVNN---WLKQLIKVTLVF--LFVA---AIFYLITPVHVMSKHTDF 2802 T K+ + K G ++NN W K VF LF A +Y+ + D Sbjct 2255 CHTQKLLVEKKAGGVINNTFKWFMSCFKWLFVFYILFTACCLGYYYMEMNKSFVHPMYDV 2314 Query 2803 SS--EIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITR 2860 +S + G+K ID GV R+I S D CF+NK +FD ++ G SY N+K CP++ VI Sbjct 2315 NSTLHVEGFKVIDKGVIREIVSEDNCFSNKFVNFDAFW---GKSYENNKNCPIVTVVIDG 2371 Query 2861 EVGFVVPGLPGTILRTTNG-DFLH---------FLPRVFSA--VGNICYTPSKLIEYTDF 2908 + G V G+PG + +G F+H ++P F+ VG YT +I F Sbjct 2372 D-GTVAVGVPGFVSWVMDGVMFVHMTQTDRRPWYIPTWFNREIVG---YTQDSIITEGSF 2427 Query 2909 ATSACVLAAECTIFKDASGKPVPYCYD-TNVLEGSVAYESLRPDTRYVLMDGSIIQFPNT 2967 TS + +A C ++ AS P YC++ N G++ + S+ P Y +G + P Sbjct 2428 YTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGALPFGSIIPHRVYFQPNGVRLIVPQQ 2486 Query 2968 YLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLL 3027 L V DS YCR CE ++ G CVS +WVL ND Y S PGVFCG L+ Sbjct 2487 ILHTPYIVKFVSDS-YCRGSVCEYTKPGYCVSLDSQWVLFNDEYISKPGVFCGSTVRELM 2545 Query 3028 TNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLM 3087 NM + + +I + ++ +V+ + ++F+ F Y+ +V L++++ Sbjct 2546 FNMVSTFFTGVNP-NIYIQLATMFLILVVIVLIFAMVIKFQGVFKAYATIVFTIMLVWVI 2604 Query 3088 SFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT---IAY 3144 + VLC+ S L + V+Y Y + + + + + H + F +VP W+ + + Sbjct 2605 NAFVLCVHSYNSVLAVILLVLYCYASMVTSRNTAIIMHCWLVFTFGLIVPTWLACCYLGF 2664 Query 3145 IICISTKHFYWFFSNYLKRRVVFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQ 3203 I+ + T +W + R +++G F ++ AA TF++ ++KL +++ + Sbjct 2665 ILYMYTPLVFWCYGTTKNTRKLYDGNEFVGNYDLAAKSTFVIRGTEFVKLTNEIG---DK 2721 Query 3204 YNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQ 3263 + YL+ Y + KY+SG Y +A LA AL+ + NSG +V+Y PP+ SI + LQ Sbjct 2722 FEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALDQYRNSGVEVVYTPPRYSIGVSRLQ 2781 Query 3264 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIR 3323 +GF+K+ PS VE C+V V+ LNGLWL D +YCPRHV+ + D+L Sbjct 2782 AGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDSIYCPRHVL---GKFSGDQWGDVLNL 2838 Query 3324 KSNHNFLVQAGN-VQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYN 3382 +NH F V N V L V+ ++ VL L+ AN +TPKYKFV+ G +F++ Y Sbjct 2839 ANNHEFEVVTQNGVTLNVVSRRLKGAVLILQTAVANAETPKYKFVKANCGDSFTIACSYG 2898 Query 3383 GSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 3442 G+ G+Y MR N TI+ SFL G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G Sbjct 2899 GTVIGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMG 2958 Query 3443 NFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVIN-------GDRWFLNRFTTTLNDFNL 3495 FYG +VD + AQ D +T N++AWLYAA+I+ +W L T ++ D+N Sbjct 2959 EFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSQPKW-LESTTVSIEDYNR 3017 Query 3496 VAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRT--ILGSALLEDE 3553 A + P + + LSA TG+ D+C L+ ++ + ILG EDE Sbjct 3018 WASDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKSAQWGSDPILGQYNFEDE 3072 Query 3554 FTPFDVVRQCSGVTFQSAVKRTIKGTHHW---LLLTILTSLLVLVQSTQWSLFFFLYENA 3610 TP V Q GV QS+ R + W +L L L +V T L F+++ Sbjct 3073 LTPESVFNQVGGVRLQSSFVRKAT-SWFWSRCVLACFLFVLCAIVLFTAVPLKFYVHAAV 3131 Query 3611 FLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATV-----AYFNMVY--MPASWVMRI 3663 L A+ I+ + VKH A++ FLLP+L TV A +Y + + V+ + Sbjct 3132 ILLMAVLFISFT------VKHVMAYMDTFLLPTLITVIIGVCAEVPFIYNTLISQVVIFL 3185 Query 3664 MTWLDMV--DTSL----------SGFK-LKDCVMYASAVVLLILMTARTVYDDGARRVWT 3710 W D V DT + + FK ++ C M + LL+L + ++T Sbjct 3186 SQWYDPVVFDTMVPWMLLPLVLYTAFKCVQGCYMNSFNTSLLMLYQFMKL----GFVIYT 3241 Query 3711 LMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVE----YC 3766 N LT + GN W L + + L IVF C + YC Sbjct 3242 SSNTLTAYTE---GN--------WELFFELVHTIVLANVSSNSLIGLIVFKCAKWMLYYC 3290 Query 3767 PIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQ 3826 + L +M+ +G+ CTCYFGL+ +N+ F LTLG Y++ VS ++RYM Sbjct 3291 NATYFNNYVLMAVMV--NGIGWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLH 3348 Query 3827 GLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSK 3886 + PPK + F NI + G+GG + +ATVQSK+SDVKCT+VVL+ +L +L VE++SK Sbjct 3349 KVNPPKTVWEVFTTNILIQGIGGDRVLPIATVQSKLSDVKCTTVVLMQLLTKLNVEANSK 3408 Query 3887 LWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIAS 3946 + A V+LHN IL + D E + ++ +L L + +D+ + C+++L LQ++ Sbjct 3409 MHAYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTIDLGEYCDDILKRSTVLQSVTQ 3468 Query 3947 EFSSLPSYAAFATAQEAYEQAVAN----GDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLE 4002 EFS +PSYA + A+ YE+ +A+ G ++ L +K+ N+AKS FDRD A+Q+KL+ Sbjct 3469 EFSHIPSYAEYERAKSIYEKVLADSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLD 3528 Query 4003 KMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNII 4062 MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K+D++ LN + + A G VPL + Sbjct 3529 SMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKIDSEKLNVLFDQANSGVVPLATV 3588 Query 4063 PLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMD----- 4117 P+ + KL +VIPD T+ +G TY++ +W I V DAD + + Sbjct 3589 PIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNIDCVTDADGTELHPTSTGSGLTYCI 3648 Query 4118 NSPNLAWPLIVTALRANS---AVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNT 4174 + N+AWPL V R V LQNNEL P ++ +C AG Q C+ ++ YY + Sbjct 3649 SGDNIAWPLKVNLTRNGHNKVDVALQNNELMPHGVKTKACVAGVDQAHCSVESK-CYYTS 3707 Query 4175 TKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGL 4234 G V A+ S +LK A F G IY +L+PPC+F +V YLYFIK Sbjct 3708 ISGSSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDPPCKFGMKVGDKVEVVYLYFIKNT 3766 Query 4235 NNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITN 4293 ++ RGMVLG+++ V LQ+ G+ TE +LS C+FAVD A Y Y+A+G QP+ N Sbjct 3767 RSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGN 3826 Query 4294 CVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKY 4349 CVKML H G+G AIT P DQ+S+GGAS CLYCR HI HP N G C KG + Sbjct 3827 CVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSF 3886 Query 4350 VQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREP-------MLQSADAQSFLNG 4402 VQIPTT DPVGF L+N VCTVC W GYGC CD LR+P + S +++LNG Sbjct 3887 VQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSLRQPKPSVQSVAVASGFDKNYLNG 3945 Query 4403 FAV 4405 + V Sbjct 3946 YGV 3948 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/242 (24%), Positives = 108/242 (45%), Gaps = 13/242 (5%) Query 1570 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 1629 ++ T D + + V+ + GQ FG + A + + E K +P D + Sbjct 1182 IYLTEDGVKYRSVVLKPGDSLGQ-FGQVF---ARNKVVFSADDVEDKEILFIPTTDKTIL 1237 Query 1630 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 1689 E Y+ D Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1238 E----YYGLDAQKYVTYLQTL--AQKWDVQYRDNFVILEWRDGNCWISSAIVLLQAAKIR 1291 Query 1690 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 1748 F L +A+ + G+ +F A A CN VG+ D ++ L +H + D +L Sbjct 1292 FK-GFLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLANLAEHFDADYTNALLK 1350 Query 1749 NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 V CG + L+G+EA + + + FK TCG +T +++ P++++ Sbjct 1351 KCVSCNCGVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPTCGASSTDEVIEASLPYLLL 1410 Query 1808 SA 1809 A Sbjct 1411 FA 1412 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/180 (28%), Positives = 80/180 (44%), Gaps = 28/180 (16%) Query 1009 QPQLEMELTPVVQ---------------TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVK 1053 +PQ+E E T VV+ T E F Y ++ + A ++E K+ Sbjct 981 EPQVEQEPTLVVKAQREKKAKKFKVKPATCEKPKFLEYKTCVGDLAVVIAKALDEFKEF- 1039 Query 1054 PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH 1113 +VNAAN ++ HGGGVA A+ DY+ +GP + V Sbjct 1040 --CIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFVKGIQ 1094 Query 1114 CL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADPIHSLRVCVDTVR 1170 C+ +VVGP + L +AY++ V+ + P+LS+GIFG D ++ +D +R Sbjct 1095 CVNNVVGPRHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGVD----FKISIDAMR 1150 >sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=rep PE=3 SV=1 Length=6629 Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 781/2420 (32%), Positives = 1209/2420 (50%), Gaps = 232/2420 (10%) Query 2080 ANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIA 2139 A N +K+ +++G + ++ + KPN L R+ + A G + V + I Sbjct 1626 AENFVKMGDKIGGVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIG 1680 Query 2140 NYAKPFLNKVVSTTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRI 2190 A +KV +T + +C P F TL+ L F +++ + Sbjct 1681 KAATFIADKVGGGVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSV 1740 Query 2191 KASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL 2250 AS T + K + ++ +I+WF+ S ++++ + Sbjct 1741 VASYKTVLCKVVLATL----------------------LIVWFVYTS---NPVMFTGIRV 1775 Query 2251 GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT 2310 + L S C Y++ +S +V YC C VCL DSL Y +++ Sbjct 1776 ---LDFLFEGSLCGPYKDYGKDSFDVL--RYCADDFICRVCLHDKDSLHLYKHAYSVEQV 1830 Query 2311 ISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLI 2368 A G + W Y++F F V G I Y + + NS ++ Sbjct 1831 YKD-----AASGFIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTG 1880 Query 2369 INLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVEC 2423 + + + + + F + +Y W Y VH + C TC +C + R+ R E Sbjct 1881 VCFLDWF-VQTVFSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEV 1939 Query 2424 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 2483 + +V G ++ +VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + P Sbjct 1940 SVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKP 1999 Query 2484 TDQSSYIVDSVTVKNGSIHLYFDKAGQ-KTYERHSLSHFVNLDNLR-ANNTKGSLPINVI 2541 T + ++VD + + ++L + A K ++ F D L+ A K +L I Sbjct 2000 TAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQI 2059 Query 2542 VFDGKSKCEESSA------KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYV 2595 DG C SA K+A++YY+Q +C+PIL+LDQAL ++ V+ Sbjct 2060 SNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYE------QLVVE------ 2107 Query 2596 NTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECL 2655 P+ K +++ + L+ +S+D + + + + S + ++ V+ Sbjct 2108 ---------PVSK--SVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMA 2156 Query 2656 KLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWN 2714 H D++ TGD N + +Y +TPRD G I+ A N +V + + +W Sbjct 2157 IFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWK 2214 Query 2715 VKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL--KGGKIVN---NW 2769 + + LS+ K + SA K+ + F +T + +QV+ T K+ + K G IV+ Sbjct 2215 FSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKC 2274 Query 2770 LKQLIKVTLVF--LFVA---AIFYLITPVHVMSKHTDFSS--EIIGYKAIDGGVTRDIAS 2822 K K L+F LF A +Y+ + D +S + G+K ID GV R+I Sbjct 2275 FKSYFKWLLIFYILFTACCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVP 2334 Query 2823 TDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNG-DF 2881 DTCF+NK +FD ++ G Y N + CP++ AVI + G V G+PG + +G F Sbjct 2335 EDTCFSNKFVNFDAFW---GRPYDNSRNCPIVTAVIDGD-GTVATGVPGFVSWVMDGVMF 2390 Query 2882 LH---------FLPRVFSA--VGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPV 2930 +H ++P F+ VG YT +I F TS + +A C ++ AS P Sbjct 2391 IHMTQTERKPWYIPTWFNREIVG---YTQDSIITEGSFYTSIALFSARC-LYLTASNTPQ 2446 Query 2931 PYCYD-TNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTC 2989 YC++ N G++ + S+ P Y +G + P L V DS YCR C Sbjct 2447 LYCFNGDNDAPGALPFGSIIPHRVYFQPNGVRLIVPQQILHTPYVVKFVSDS-YCRGSVC 2505 Query 2990 ERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVA 3049 E + G CVS + +WVL ND Y S PGVFCG L+ +M + + +I + Sbjct 2506 EYTRPGYCVSLNPQWVLFNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLAT 2564 Query 3050 GGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIY 3109 ++ +VV + ++F+ F Y+ V L+++++ +LC+ S L + V+Y Sbjct 2565 MFLILVVVVLIFAMVIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLY 2624 Query 3110 LYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT---IAYIICISTKHFYWFFSNYLKRRVV 3166 Y + + + + H + F +VP W+ + +II + T F W + R + Sbjct 2625 CYASLVTSRNTVIIMHCWLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKL 2684 Query 3167 FNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTS 3225 ++G F ++ AA TF++ ++KL +++ ++ YL+ Y + KY+SG Sbjct 2685 YDGNEFVGNYDLAAKSTFVIRGSEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQD 2741 Query 3226 YREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTC 3285 Y +A LA AL+ + NSG +++Y PP+ SI + LQSGF+K+ PS VE C+V V+ Sbjct 2742 YLQACRAWLAYALDQYRNSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSY 2801 Query 3286 GTTTLNGLWLDDVVYCPRHVICT-SEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRVIGH 3343 LNGLWL D +YCPRHV+ S D N D+L +NH F V + V L V+ Sbjct 2802 RGNNLNGLWLGDTIYCPRHVLGKFSGDQWN----DVLNLANNHEFEVTTQHGVTLNVVSR 2857 Query 3344 SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSF 3403 ++ VL L+ AN +TPKYKF++ G +F++ Y G+ G+Y MR N TI+ SF Sbjct 2858 RLKGAVLILQTAVANAETPKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASF 2917 Query 3404 LNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI 3463 L G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G FYG +VD + AQ D + Sbjct 2918 LAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLV 2977 Query 3464 TVNVLAWLYAAVINGD-------RWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPL 3516 T N++AWLYAA+I+ +W L T +++D+N A + P + + L Sbjct 2978 TNNIVAWLYAAIISVKESSFSLPKW-LESTTVSVDDYNKWAGDNGFTPFSTSTA--ITKL 3034 Query 3517 SAQTGIAVLDMCASLKELL--QNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKR 3574 SA TG+ D+C L+ ++ + G ILG EDE TP V Q GV QS+ R Sbjct 3035 SAITGV---DVCKLLRTIMVKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSFVR 3091 Query 3575 TIKGTHHW---LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKH 3631 + W +L L L +V T L F++Y L A+ I+ + VKH Sbjct 3092 KAT-SWFWSRCVLACFLFVLCAIVLFTAVPLKFYVYAAVILLMAVLFISFT------VKH 3144 Query 3632 KHAFLCLFLLPSLATV-----AYFNMVY--MPASWVMRIMTWLDMV--DTSL-------- 3674 A++ FLLP+L TV A +Y + + V+ + W D V DT + Sbjct 3145 VMAYMDTFLLPTLITVIIGVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMFLPLV 3204 Query 3675 --SGFK-LKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAI 3731 + FK ++ C M + LL+L + ++T N LT + GN Sbjct 3205 LYTAFKCVQGCYMNSFNTSLLMLYQFVKL----GFVIYTSSNTLTAYTE---GN------ 3251 Query 3732 SMWALII-----SVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFL 3786 W L +V +N S +F+ + +M + YC ++ L +M V C + Sbjct 3252 --WELFFELVHTTVLANVSSNSLIGLFVFKCAKWM-LYYCNATYLNNYVLMAVM-VNC-I 3306 Query 3787 GYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLG 3846 G+ CTCYFGL+ +N+ F LTLG Y++ VS ++RYM + PPK + F NI + G Sbjct 3307 GWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQG 3366 Query 3847 VGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTE 3906 +GG + +ATVQ+K+SDVKCT+VVL+ +L +L VE++SK+ V+LHN IL + D E Sbjct 3367 IGGDRVLPIATVQAKLSDVKCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGE 3426 Query 3907 AFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQ 3966 + ++ +L L + +D+++ C+++L LQ++ EFS +PSYA + A+ YE+ Sbjct 3427 CMDNLLGMLITLFCIDSTIDLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEK 3486 Query 3967 AVAN----GDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKR 4022 + + G ++ L +K+ N+AKS FDRD A+Q+KL+ MA++AMT MYK+AR D+R Sbjct 3487 VLVDSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRR 3546 Query 4023 AKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKN 4082 AK+ S++ +LF+ML+K+D++ LN + + A G VPL +P+ + KL +VIPD T+ Sbjct 3547 AKLVSSLHALLFSMLKKIDSEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVK 3606 Query 4083 TCDGTTFTYASALWEIQQVVDADSKIVQLSEISMD-----NSPNLAWPLIVTALRANSA- 4136 +G TY++ +W I V+DAD + + + N+AWPL V R Sbjct 3607 CVEGVHVTYSTVVWNIDTVIDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNK 3666 Query 4137 --VKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 V LQNNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A Sbjct 3667 VDVVLQNNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVA 3725 Query 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 F G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ+ Sbjct 3726 SFLNEAGN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQS 3784 Query 4255 -GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3785 KGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPS 3844 Query 4314 ANMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTV 4369 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N V Sbjct 3845 PTPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKV 3903 Query 4370 CTVCGMWKGYGCSCDQLREP 4389 CTVC W GYGC CD LR+P Sbjct 3904 CTVCQCWIGYGCQCDSLRQP 3923 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 15/243 (6%) Query 1570 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 1629 ++ T D + + V+ + GQ FG Y V + + + YV D ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYAKNKIV--FTADDVEDKEILYVPTTDKSI-- 1234 Query 1630 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 1689 EYY ++ Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1235 --LEYYGLDAQKYV-IYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIR 1289 Query 1690 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 1748 F L +A+ + G+ +F A A C VG+ D ++ L +H + D L Sbjct 1290 FK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLK 1348 Query 1749 -NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM 1806 V C CG + L+G+EA + + + FK TCG T +++ P+++ Sbjct 1349 KRVSC-NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLL 1407 Query 1807 MSA 1809 + A Sbjct 1408 LFA 1410 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%) Query 985 QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ---TIEVNSFSGYLKLTDNVYIK 1041 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 971 EEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVV 1026 Query 1042 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 1101 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1027 IAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ--- 1080 Query 1102 SCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADP 1158 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD- 1139 Query 1159 IHSLRVCVDTVR 1170 ++ +D +R Sbjct 1140 ---FKMSIDAMR 1148 >sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 SV=1 Length=6629 Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 781/2420 (32%), Positives = 1209/2420 (50%), Gaps = 232/2420 (10%) Query 2080 ANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIA 2139 A N +K+ +++G + ++ + KPN L R+ + A G + V + I Sbjct 1626 AENFVKMGDKIGGVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIG 1680 Query 2140 NYAKPFLNKVVSTTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRI 2190 A +KV +T + +C P F TL+ L F +++ + Sbjct 1681 KAATFIADKVGGGVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSV 1740 Query 2191 KASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAAL 2250 AS T + K + ++ +I+WF+ S ++++ + Sbjct 1741 VASYKTVLCKVVLATL----------------------LIVWFVYTS---NPVMFTGIRV 1775 Query 2251 GVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQIT 2310 + L S C Y++ +S +V YC C VCL DSL Y +++ Sbjct 1776 ---LDFLFEGSLCGPYKDYGKDSFDVL--RYCADDFICRVCLHDKDSLHLYKHAYSVEQV 1830 Query 2311 ISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLI 2368 A G + W Y++F F V G I Y + + NS ++ Sbjct 1831 YKD-----AASGFIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTG 1880 Query 2369 INLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVEC 2423 + + + + + F + +Y W Y VH + C TC +C + R+ R E Sbjct 1881 VCFLDWF-VQTVFSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEV 1939 Query 2424 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 2483 + +V G ++ +VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + P Sbjct 1940 SVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKP 1999 Query 2484 TDQSSYIVDSVTVKNGSIHLYFDKAGQ-KTYERHSLSHFVNLDNLR-ANNTKGSLPINVI 2541 T + ++VD + + ++L + A K ++ F D L+ A K +L I Sbjct 2000 TAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQI 2059 Query 2542 VFDGKSKCEESSA------KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYV 2595 DG C SA K+A++YY+Q +C+PIL+LDQAL ++ V+ Sbjct 2060 SNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYE------QLVVE------ 2107 Query 2596 NTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECL 2655 P+ K +++ + L+ +S+D + + + + S + ++ V+ Sbjct 2108 ---------PVSK--SVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMA 2156 Query 2656 KLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHNIALIWN 2714 H D++ TGD N + +Y +TPRD G I+ A N +V + + +W Sbjct 2157 IFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWK 2214 Query 2715 VKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL--KGGKIVN---NW 2769 + + LS+ K + SA K+ + F +T + +QV+ T K+ + K G IV+ Sbjct 2215 FSELIKLSDSCLKYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKC 2274 Query 2770 LKQLIKVTLVF--LFVA---AIFYLITPVHVMSKHTDFSS--EIIGYKAIDGGVTRDIAS 2822 K K L+F LF A +Y+ + D +S + G+K ID GV R+I Sbjct 2275 FKSYFKWLLIFYILFTACCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVP 2334 Query 2823 TDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNG-DF 2881 DTCF+NK +FD ++ G Y N + CP++ AVI + G V G+PG + +G F Sbjct 2335 EDTCFSNKFVNFDAFW---GRPYDNSRNCPIVTAVIDGD-GTVATGVPGFVSWVMDGVMF 2390 Query 2882 LH---------FLPRVFSA--VGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPV 2930 +H ++P F+ VG YT +I F TS + +A C ++ AS P Sbjct 2391 IHMTQTERKPWYIPTWFNREIVG---YTQDSIITEGSFYTSIALFSARC-LYLTASNTPQ 2446 Query 2931 PYCYD-TNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTC 2989 YC++ N G++ + S+ P Y +G + P L V DS YCR C Sbjct 2447 LYCFNGDNDAPGALPFGSIIPHRVYFQPNGVRLIVPQQILHTPYVVKFVSDS-YCRGSVC 2505 Query 2990 ERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVA 3049 E + G CVS + +WVL ND Y S PGVFCG L+ +M + + +I + Sbjct 2506 EYTRPGYCVSLNPQWVLFNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLAT 2564 Query 3050 GGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIY 3109 ++ +VV + ++F+ F Y+ V L+++++ +LC+ S L + V+Y Sbjct 2565 MFLILVVVVLIFAMVIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLY 2624 Query 3110 LYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT---IAYIICISTKHFYWFFSNYLKRRVV 3166 Y + + + + H + F +VP W+ + +II + T F W + R + Sbjct 2625 CYASLVTSRNTVIIMHCWLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKL 2684 Query 3167 FNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTS 3225 ++G F ++ AA TF++ ++KL +++ ++ YL+ Y + KY+SG Sbjct 2685 YDGNEFVGNYDLAAKSTFVIRGSEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQD 2741 Query 3226 YREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTC 3285 Y +A LA AL+ + NSG +++Y PP+ SI + LQSGF+K+ PS VE C+V V+ Sbjct 2742 YLQACRAWLAYALDQYRNSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSY 2801 Query 3286 GTTTLNGLWLDDVVYCPRHVICT-SEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRVIGH 3343 LNGLWL D +YCPRHV+ S D N D+L +NH F V + V L V+ Sbjct 2802 RGNNLNGLWLGDTIYCPRHVLGKFSGDQWN----DVLNLANNHEFEVTTQHGVTLNVVSR 2857 Query 3344 SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSF 3403 ++ VL L+ AN +TPKYKF++ G +F++ Y G+ G+Y MR N TI+ SF Sbjct 2858 RLKGAVLILQTAVANAETPKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASF 2917 Query 3404 LNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI 3463 L G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G FYG +VD + AQ D + Sbjct 2918 LAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLV 2977 Query 3464 TVNVLAWLYAAVINGD-------RWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPL 3516 T N++AWLYAA+I+ +W L T +++D+N A + P + + L Sbjct 2978 TNNIVAWLYAAIISVKESSFSLPKW-LESTTVSVDDYNKWAGDNGFTPFSTSTA--ITKL 3034 Query 3517 SAQTGIAVLDMCASLKELL--QNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKR 3574 SA TG+ D+C L+ ++ + G ILG EDE TP V Q GV QS+ R Sbjct 3035 SAITGV---DVCKLLRTIMVKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSFVR 3091 Query 3575 TIKGTHHW---LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKH 3631 + W +L L L +V T L F++Y L A+ I+ + VKH Sbjct 3092 KAT-SWFWSRCVLACFLFVLCAIVLFTAVPLKFYVYAAVILLMAVLFISFT------VKH 3144 Query 3632 KHAFLCLFLLPSLATV-----AYFNMVY--MPASWVMRIMTWLDMV--DTSL-------- 3674 A++ FLLP+L TV A +Y + + V+ + W D V DT + Sbjct 3145 VMAYMDTFLLPTLITVIIGVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMFLPLV 3204 Query 3675 --SGFK-LKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAI 3731 + FK ++ C M + LL+L + ++T N LT + GN Sbjct 3205 LYTAFKCVQGCYMNSFNTSLLMLYQFVKL----GFVIYTSSNTLTAYTE---GN------ 3251 Query 3732 SMWALII-----SVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFL 3786 W L +V +N S +F+ + +M + YC ++ L +M V C + Sbjct 3252 --WELFFELVHTTVLANVSSNSLIGLFVFKCAKWM-LYYCNATYLNNYVLMAVM-VNC-I 3306 Query 3787 GYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLG 3846 G+ CTCYFGL+ +N+ F LTLG Y++ VS ++RYM + PPK + F NI + G Sbjct 3307 GWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQG 3366 Query 3847 VGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTE 3906 +GG + +ATVQ+K+SDVKCT+VVL+ +L +L VE++SK+ V+LHN IL + D E Sbjct 3367 IGGDRVLPIATVQAKLSDVKCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGE 3426 Query 3907 AFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQ 3966 + ++ +L L + +D+++ C+++L LQ++ EFS +PSYA + A+ YE+ Sbjct 3427 CMDNLLGMLITLFCIDSTIDLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEK 3486 Query 3967 AVAN----GDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKR 4022 + + G ++ L +K+ N+AKS FDRD A+Q+KL+ MA++AMT MYK+AR D+R Sbjct 3487 VLVDSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRR 3546 Query 4023 AKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKN 4082 AK+ S++ +LF+ML+K+D++ LN + + A G VPL +P+ + KL +VIPD T+ Sbjct 3547 AKLVSSLHALLFSMLKKIDSEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVK 3606 Query 4083 TCDGTTFTYASALWEIQQVVDADSKIVQLSEISMD-----NSPNLAWPLIVTALRANSA- 4136 +G TY++ +W I V+DAD + + + N+AWPL V R Sbjct 3607 CVEGVHVTYSTVVWNIDTVIDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNK 3666 Query 4137 --VKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 V LQNNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A Sbjct 3667 VDVVLQNNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVA 3725 Query 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 F G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ+ Sbjct 3726 SFLNEAGN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQS 3784 Query 4255 -GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3785 KGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPS 3844 Query 4314 ANMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTV 4369 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N V Sbjct 3845 PTPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKV 3903 Query 4370 CTVCGMWKGYGCSCDQLREP 4389 CTVC W GYGC CD LR+P Sbjct 3904 CTVCQCWIGYGCQCDSLRQP 3923 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 15/243 (6%) Query 1570 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 1629 ++ T D + + V+ + GQ FG Y V + + + YV D ++ Sbjct 1180 IYLTEDGVKYRSIVLKPGDSLGQ-FGQVYAKNKIV--FTADDVEDKEILYVPTTDKSI-- 1234 Query 1630 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 1689 EYY ++ Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1235 --LEYYGLDAQKYV-IYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIR 1289 Query 1690 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 1748 F L +A+ + G+ +F A A C VG+ D ++ L +H + D L Sbjct 1290 FK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLK 1348 Query 1749 -NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM 1806 V C CG + L+G+EA + + + FK TCG T +++ P+++ Sbjct 1349 KRVSC-NCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLL 1407 Query 1807 MSA 1809 + A Sbjct 1408 LFA 1410 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%) Query 985 QQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ---TIEVNSFSGYLKLTDNVYIK 1041 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ + Sbjct 971 EEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLTVV 1026 Query 1042 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 1101 A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1027 IAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ--- 1080 Query 1102 SCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADP 1158 V C+ +VVGP + L +AY+N V+ + P+LS GIFG D Sbjct 1081 RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVD- 1139 Query 1159 IHSLRVCVDTVR 1170 ++ +D +R Sbjct 1140 ---FKMSIDAMR 1148 >sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1 Length=6631 Score = 1110 bits (2872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 752/2260 (33%), Positives = 1146/2260 (51%), Gaps = 192/2260 (8%) Query 2229 IIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPC 2288 +I+WF+ S ++++ + + L S C Y + +S +V YC G C Sbjct 1759 LIVWFIYTS---NPVVFTGIRV---LDFLFEGSLCGPYNDYGKDSFDVL--RYCAGDFTC 1810 Query 2289 SVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAI 2346 VCL DSL Y +++ A G+ W Y++F F V G I Sbjct 1811 RVCLHDRDSLHLYKHAYSVEQIYKD-----AASGINFNWNWLYLVFLILFVKPVAGFVII 1865 Query 2347 MQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVV 2401 Y + + +S ++ + + + + + F + +Y W Y VH + Sbjct 1866 -----CYCVKYLVLSSTVLQTGVGFLDWF-VKTVFTHFNFMGAGFYFWLFYKIYVQVHHI 1919 Query 2402 DGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAG 2461 C TC +C + R+ R E + +V G ++ +VY N G FCK HNW C NCD + Sbjct 1920 LYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQ 1979 Query 2462 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKA-GQKTYERHSLSH 2520 +TF+S EVA +LS + KR + PT + ++V V + ++L + A K ++ Sbjct 1980 NTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVDDFVNLKYKAAIPGKDNASSAVKC 2039 Query 2521 FVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESSA------KSASVYYSQLMCQPILLLD 2573 F D L+ A K +L I DG C SA K+A+VYY+Q +C+PIL+LD Sbjct 2040 FSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKNAAVYYAQYLCKPILILD 2099 Query 2574 QALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTF 2633 QAL + P+ K +++ + L+ +S+D + Sbjct 2100 QAL---------------------YEQLIVEPVSK--SVIDKVCSILSNIISVDTAALNY 2136 Query 2634 ISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACI 2692 + + + S + ++ V+ H ++E TGD N + +Y + +TPRD G I Sbjct 2137 KAGTLRDALLSITKDEEAVDMAIFCHNHEVEYTGDGFTNVIPSYGMDTDKLTPRDRGFLI 2196 Query 2693 DCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVN 2752 + A N +V + + +W D + LS+ K + SA K+ F +T + +QV++ Sbjct 2197 NADASIANLRVKNAPPV--VWKFSDLIKLSDSCLKYLISATVKSGGRFFITKSGAKQVIS 2254 Query 2753 VVTTKIAL--KGGKIVNN---WLKQLIKVTLVF--LFVA---AIFYLITPVHVMSKHTDF 2802 T K+ + K G ++NN W K VF LF A +Y+ + D Sbjct 2255 CHTQKLLVEKKAGGVINNTFKWFMSCFKWLFVFYILFTACCLGYYYMEMNKSFVHPMYDV 2314 Query 2803 SS--EIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITR 2860 +S + G+K ID GV R+I S D CF+NK +FD ++ G SY N+K CP++ VI Sbjct 2315 NSTLHVEGFKVIDKGVIREIVSEDNCFSNKFVNFDAFW---GKSYENNKNCPIVTVVIDG 2371 Query 2861 EVGFVVPGLPGTILRTTNG-DFLH---------FLPRVFSA--VGNICYTPSKLIEYTDF 2908 + G V G+PG + +G F+H ++P F+ VG YT +I F Sbjct 2372 D-GTVAVGVPGFVSWVMDGVMFVHMTQTDRRPWYIPTWFNREIVG---YTQDSIITEGSF 2427 Query 2909 ATSACVLAAECTIFKDASGKPVPYCYD-TNVLEGSVAYESLRPDTRYVLMDGSIIQFPNT 2967 TS + +A C ++ AS P YC++ N G++ + S+ P Y +G + P Sbjct 2428 YTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGALPFGSIIPHRVYFQPNGVRLIVPQQ 2486 Query 2968 YLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLL 3027 L V DS YCR CE ++ G CVS +WVL ND Y S PGVFCG L+ Sbjct 2487 ILHTPYIVKFVSDS-YCRGSVCEYTKPGYCVSLDSQWVLFNDEYISKPGVFCGSTVRELM 2545 Query 3028 TNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLM 3087 NM + + +I + ++ +V+ + ++F+ F Y+ +V L++++ Sbjct 2546 FNMVSTFFTGVNP-NIYIQLATMFLILVVIVLIFAMVIKFQGVFKAYATIVFTIMLVWVI 2604 Query 3088 SFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT---IAY 3144 + VLC+ S L + V+Y Y + + + + + H + F +VP W+ + + Sbjct 2605 NAFVLCVHSYNSVLAVILLVLYCYASMVTSRNTAIIMHCWLVFTFGLIVPTWLACCYLGF 2664 Query 3145 IICISTKHFYWFFSNYLKRRVVFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQ 3203 I+ + T +W + R +++G F ++ AA TF++ ++KL +++ + Sbjct 2665 ILYMYTPLVFWCYGTTKNTRKLYDGNEFVGNYDLAAKSTFVIRGTEFVKLTNEIG---DK 2721 Query 3204 YNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQ 3263 + YL+ Y + KY+SG Y +A LA AL+ + NSG +V+Y PP+ SI + LQ Sbjct 2722 FEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALDQYRNSGVEVVYTPPRYSIGVSRLQ 2781 Query 3264 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIR 3323 +GF+K+ PS VE C+V V+ LNGLWL D +YCPRHV+ + D+L Sbjct 2782 AGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDSIYCPRHVL---GKFSGDQWGDVLNL 2838 Query 3324 KSNHNFLVQAGN-VQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYN 3382 +NH F V N V L V+ ++ VL L+ AN +TPKYKFV+ G +F++ Y Sbjct 2839 ANNHEFEVVTQNGVTLNVVSRRLKGAVLILQTAVANAETPKYKFVKANCGDSFTIACSYG 2898 Query 3383 GSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 3442 G+ G+Y MR N TI+ SFL G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G Sbjct 2899 GTVIGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMG 2958 Query 3443 NFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVIN-------GDRWFLNRFTTTLNDFNL 3495 FYG +VD + AQ D +T N++AWLYAA+I+ +W L T ++ D+N Sbjct 2959 EFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSQPKW-LESTTVSIEDYNR 3017 Query 3496 VAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRT--ILGSALLEDE 3553 A + P + + LSA TG+ D+C L+ ++ + ILG EDE Sbjct 3018 WASDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKSAQWGSDPILGQYNFEDE 3072 Query 3554 FTPFDVVRQCSGVTFQSAVKRTIKGTHHW---LLLTILTSLLVLVQSTQWSLFFFLYENA 3610 TP V Q GV QS+ R + W +L L L +V T L F+++ Sbjct 3073 LTPESVFNQVGGVRLQSSFVRKAT-SWFWSRCVLACFLFVLCAIVLFTAVPLKFYVHAAV 3131 Query 3611 FLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATV-----AYFNMVY--MPASWVMRI 3663 L A+ I+ + VKH A++ FLLP+L TV A +Y + + V+ + Sbjct 3132 ILLMAVLFISFT------VKHVMAYMDTFLLPTLITVIIGVCAEVPFIYNTLISQVVIFL 3185 Query 3664 MTWLDMV--DTSL----------SGFK-LKDCVMYASAVVLLILMTARTVYDDGARRVWT 3710 W D V DT + + FK ++ C M + LL+L + ++T Sbjct 3186 SQWYDPVVFDTMVPWMLLPLVLYTAFKCVQGCYMNSFNTSLLMLYQFMKL----GFVIYT 3241 Query 3711 LMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVE----YC 3766 N LT + GN W L + + L IVF C + YC Sbjct 3242 SSNTLTAYTE---GN--------WELFFELVHTIVLANVSSNSLIGLIVFKCAKWMLYYC 3290 Query 3767 PIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQ 3826 + L +M+ +G+ CTCYFGL+ +N+ F LTLG Y++ VS ++RYM Sbjct 3291 NATYFNNYVLMAVMVN--GIGWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLH 3348 Query 3827 GLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSK 3886 + PPK + F NI + G+GG + +ATVQSK+SDVKCT+VVL+ +L +L VE++SK Sbjct 3349 KVNPPKTVWEVFTTNILIQGIGGDRVLPIATVQSKLSDVKCTTVVLMQLLTKLNVEANSK 3408 Query 3887 LWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIAS 3946 + A V+LHN IL + D E + ++ +L L + +D+ + C+++L LQ++ Sbjct 3409 MHAYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTIDLGEYCDDILKRSTVLQSVTQ 3468 Query 3947 EFSSLPSYAAFATAQEAYEQAVAN----GDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLE 4002 EFS +PSYA + A+ YE+ +A+ G ++ L +K+ N+AKS FDRD A+Q+KL+ Sbjct 3469 EFSHIPSYAEYERAKSIYEKVLADSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLD 3528 Query 4003 KMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNII 4062 MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K+D++ LN + + A G VPL + Sbjct 3529 SMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKIDSEKLNVLFDQANSGVVPLATV 3588 Query 4063 PLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMD----- 4117 P+ + KL +VIPD T+ +G TY++ +W I V DAD + + Sbjct 3589 PIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNIDCVTDADGTELHPTSTGSGLTYCI 3648 Query 4118 NSPNLAWPLIVTALRANS---AVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNT 4174 + N+AWPL V R V LQNNEL P ++ +C AG Q C+ ++ YY + Sbjct 3649 SGDNIAWPLKVNLTRNGHNKVDVALQNNELMPHGVKTKACVAGVDQAHCSVESK-CYYTS 3707 Query 4175 TKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGL 4234 G V A+ S +LK A F G IY +L+PPC+F +V YLYFIK Sbjct 3708 ISGSSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDPPCKFGMKVGDKVEVVYLYFIKNT 3766 Query 4235 NNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITN 4293 ++ RGMVLG+++ V LQ+ G+ TE +LS C+FAVD A Y Y+A+G QP+ N Sbjct 3767 RSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGN 3826 Query 4294 CVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKY 4349 CVKML H G+G AIT P DQ+S+GGAS CLYCR HI HP N G C KG + Sbjct 3827 CVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSF 3886 Query 4350 VQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREP 4389 VQIPTT DPVGF L+N VCTVC W GYGC CD LR+P Sbjct 3887 VQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSLRQP 3925 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/242 (24%), Positives = 108/242 (45%), Gaps = 13/242 (5%) Query 1570 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 1629 ++ T D + + V+ + GQ FG + A + + E K +P D + Sbjct 1182 IYLTEDGVKYRSVVLKPGDSLGQ-FGQVF---ARNKVVFSADDVEDKEILFIPTTDKTIL 1237 Query 1630 EAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELK 1689 E Y+ D Y+ L +KW + ++W D NC++++A++ LQ +++ Sbjct 1238 E----YYGLDAQKYVTYLQTL--AQKWDVQYRDNFVILEWRDGNCWISSAIVLLQAAKIR 1291 Query 1690 FNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVL- 1748 F L +A+ + G+ +F A A CN VG+ D ++ L +H + D +L Sbjct 1292 FK-GFLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSDANWLLANLAEHFDADYTNALLK 1350 Query 1749 NVVCKTCGQQQTTLKGVEA-VMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM 1807 V CG + L+G+EA + + + FK TCG +T +++ P++++ Sbjct 1351 KCVSCNCGVKSYELRGLEACIQPVRAPNLLHFKTQYSNCPTCGASSTDEVIEASLPYLLL 1410 Query 1808 SA 1809 A Sbjct 1411 FA 1412 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/180 (28%), Positives = 80/180 (44%), Gaps = 28/180 (16%) Query 1009 QPQLEMELTPVVQ---------------TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVK 1053 +PQ+E E T VV+ T E F Y ++ + A ++E K+ Sbjct 981 EPQVEQEPTLVVKAQREKKAKKFKVKPATCEKPKFLEYKTCVGDLAVVIAKALDEFKEF- 1039 Query 1054 PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH 1113 +VNAAN ++ HGGGVA A+ DY+ +GP + V Sbjct 1040 --CIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFVKGIQ 1094 Query 1114 CL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADPIHSLRVCVDTVR 1170 C+ +VVGP + L +AY++ V+ + P+LS+GIFG D ++ +D +R Sbjct 1095 CVNNVVGPRHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGVD----FKISIDAMR 1150 >sp|Q4J9D2|Y1252_SULAC Uncharacterized protein Saci_1252 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=Saci_1252 PE=4 SV=1 Length=181 Score = 73.2 bits (178), Expect = 9e-13, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 10/124 (8%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V ++N DI KV+ +VNAAN YL HGGGVA A+ ++ +Q ESD+Y+ NGP+ Sbjct 13 VILENGDIT----KVEADAIVNAANSYLSHGGGVALAIVRSGGYIIQEESDEYVRRNGPV 68 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQL---LKSAYENFNQHEV--LLAPLLSA 1151 VG V + L A++ +H VGP D +L ++ + E ++ ++ + P +S Sbjct 69 PVGEVAVTTAGKLKARYVIHAVGPRYGIEGDDKLESAIRRSLEKADELKLSSIALPAIST 128 Query 1152 GIFG 1155 GI+G Sbjct 129 GIYG 132 >sp|Q8ZXT3|Y1111_PYRAE Uncharacterized protein PAE1111 OS=Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2) OX=178306 GN=PAE1111 PE=4 SV=1 Length=182 Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 83/170 (49%), Gaps = 23/170 (14%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V + DI E V+ +VNAAN YL+HGGGVAGA+ + +Q ES +++ +GP+ Sbjct 10 VVLMRGDITE----VEADAIVNAANSYLEHGGGVAGAIVRKGGQVIQEESREWVRKHGPV 65 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN--FNQHEVLLA----PLLS 1150 VG V S L AK+ +H VGP E I+ L A +N E+ L P +S Sbjct 66 PVGDVAVTSAGRLKAKYVIHAVGPRCGV-EPIEKLAEAVKNALLKAEELGLVSIALPAIS 124 Query 1151 AGIFG----------ADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSF 1190 GIFG A I + + ++R + + ++ + Y K + F Sbjct 125 TGIFGCPYDAAAEQMATAIREVAPALRSIR-RILVVLYGEEAYQKFLEVF 173 >sp|Q97UU4|Y2899_SACS2 Uncharacterized protein SSO2899 OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=SSO2899 PE=4 SV=1 Length=177 Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats. Identities = 53/167 (32%), Positives = 85/167 (51%), Gaps = 19/167 (11%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 +Y+ DI E ++ +VNAAN YL+HGGGVA A+ + +Q ESD+Y+ GP+ Sbjct 10 IYLIKGDITE----IEADAIVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFGPV 65 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVN-KGEDIQLLKSAYENFNQHEVL-----LAPLLS 1150 VG V S L AK+ +H VGP +GED +L + +++ + + L P +S Sbjct 66 PVGEVAVTSAGKLKAKYVIHAVGPRYGIEGED-KLESAIFKSLLKADELSLSSIAMPAIS 124 Query 1151 AGIFGADPIHSLRVCVDTVR-------TNVYLAVFDKNLYDKLVSSF 1190 GI+G R+ + ++ V + ++ K+ YD S F Sbjct 125 TGIYGYPFEICARIMANVLKGYKPKTLRKVMICLYTKDAYDVFKSIF 171 >sp|Q9WYX8|Y508_THEMA Uncharacterized protein TM_0508 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0508 PE=3 SV=1 Length=599 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/128 (40%), Positives = 67/128 (52%), Gaps = 13/128 (10%) Query 1037 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 1096 + I DI E + +VNAAN YLKHGGGVAGA+ +A + +Q ESD + G Sbjct 428 KIRIVKGDITRE----EVDAIVNAANEYLKHGGGVAGAIVRAGGSVIQEESDRIVQERGR 483 Query 1097 LKVGGSCVLSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYEN-FNQHEVLLA----P 1147 + G + V S L AK+ +H VGP + GED L K+ Y HE+ L P Sbjct 484 VPTGEAVVTSAGKLKAKYVIHTVGPVWRGGSHGEDELLYKAVYNALLRAHELKLKSISMP 543 Query 1148 LLSAGIFG 1155 +S GIFG Sbjct 544 AISTGIFG 551 >sp|Q96XY5|Y2383_SULTO Uncharacterized protein STK_23830 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=STK_23830 PE=4 SV=1 Length=182 Score = 67.0 bits (162), Expect = 1e-10, Method: Composition-based stats. Identities = 58/189 (31%), Positives = 93/189 (49%), Gaps = 32/189 (17%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V I DI E ++ +VNAAN YL+HGGGVA A+ + +Q ES +Y+ GP+ Sbjct 3 VKIIKGDITE----IEAEAIVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPV 58 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVN-KGEDIQLLKSAYENF--NQHEVLLA----PLL 1149 GG V S L AK+ +H VGP +GE + L+ A N E+ L+ P + Sbjct 59 PTGGVAVTSAGKLKAKYVIHAVGPRYGIEGE--EKLEEAIRNALRKAEELKLSSIALPAI 116 Query 1150 SAGIFGADPIHSLRVCVDTV-------RTN------VYLAVFDKNLYDKLVSSF-LEMKS 1195 S GI+G + +C + + TN + ++++ + Y+ V+ F E+ Sbjct 117 STGIYG----YPYEICAEKMVKVIKEEYTNFKHLNTIIVSLYSEEAYNIFVNIFERELAK 172 Query 1196 EKQVEQKIA 1204 EK + K++ Sbjct 173 EKNITLKMS 181 >sp|P0C6F3|R1A_BEV Replicase polyprotein 1a OS=Berne virus OX=11156 GN=1a PE=1 SV=1 Length=4569 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/147 (33%), Positives = 77/147 (52%), Gaps = 14/147 (10%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK--HC 1114 VVN AN LKHGGG+A ++ +Q S++YI N + V + G L K + Sbjct 1715 VVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITKNKTVPVTKAIKSPGFQLGKKVNI 1774 Query 1115 LHVVGPNVNKGEDIQLLKSAYENF-----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTV 1169 +H VGP V+ G+ Q L A+ + +QH +L + +LS GIFG ++ +T Sbjct 1775 IHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILTS-MLSTGIFGC----TVNDSFNTF 1829 Query 1170 RTNVYLAVFDKNLYDKLVSSFLEMKSE 1196 +NV A DK+L +V++ +E ++ Sbjct 1830 LSNV--ARLDKSLVVFVVTNMVEQYNQ 1854 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 17/143 (12%) Query 3052 IVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLF-------LMSFTVLCLTPVYSFLPGV 3104 V IVV + + R YS+ F ++F +M V+CL P+ +PGV Sbjct 3063 FVFIVVIFTVIFLILIRLYIVMYSYFKVFTYVVFKLLFVNIIMVLFVVCLPPL---VPGV 3119 Query 3105 YSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRR 3164 V L +L + V FL ++ ++ +F ++P++ + ++ + F+W + Sbjct 3120 VFV----LALWLCDSVMFLLYLAFLSLF--ILPWFYVLFFLFMVGGFVFWWMMRSADVVH 3173 Query 3165 VVFNGVSFS-TFEEAALCTFLLN 3186 + +G++F+ TFE+ + C F LN Sbjct 3174 LTTDGLTFNGTFEQISKCVFPLN 3196 >sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156 GN=rep PE=1 SV=1 Length=6857 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/147 (33%), Positives = 77/147 (52%), Gaps = 14/147 (10%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK--HC 1114 VVN AN LKHGGG+A ++ +Q S++YI N + V + G L K + Sbjct 1715 VVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITKNKTVPVTKAIKSPGFQLGKKVNI 1774 Query 1115 LHVVGPNVNKGEDIQLLKSAYENF-----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTV 1169 +H VGP V+ G+ Q L A+ + +QH +L + +LS GIFG ++ +T Sbjct 1775 IHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILTS-MLSTGIFGC----TVNDSFNTF 1829 Query 1170 RTNVYLAVFDKNLYDKLVSSFLEMKSE 1196 +NV A DK+L +V++ +E ++ Sbjct 1830 LSNV--ARLDKSLVVFVVTNMVEQYNQ 1854 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 17/143 (12%) Query 3052 IVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLF-------LMSFTVLCLTPVYSFLPGV 3104 V IVV + + R YS+ F ++F +M V+CL P+ +PGV Sbjct 3063 FVFIVVIFTVIFLILIRLYIVMYSYFKVFTYVVFKLLFVNIIMVLFVVCLPPL---VPGV 3119 Query 3105 YSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRR 3164 V L +L + V FL ++ ++ +F ++P++ + ++ + F+W + Sbjct 3120 VFV----LALWLCDSVMFLLYLAFLSLF--ILPWFYVLFFLFMVGGFVFWWMMRSADVVH 3173 Query 3165 VVFNGVSFS-TFEEAALCTFLLN 3186 + +G++F+ TFE+ + C F LN Sbjct 3174 LTTDGLTFNGTFEQISKCVFPLN 3196 >sp|P36327|POLN_EEVV3 Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain 3880) OX=36382 PE=3 SV=3 Length=2485 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/140 (34%), Positives = 70/140 (50%), Gaps = 26/140 (19%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 1115 V++NAAN + GGGV GAL K + ++ P++VG + ++ G AKH + Sbjct 1347 VIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--AAKHII 1395 Query 1116 HVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIFGADP------IH 1160 H VGPN NK +I+ L AYE N N ++ + PLLS GIF + ++ Sbjct 1396 HAVGPNFNKVSEIEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLN 1455 Query 1161 SLRVCVDTVRTNVYLAVFDK 1180 L +DT +V + DK Sbjct 1456 HLLTALDTTDADVAIYCRDK 1475 >sp|Q8CAS9|PARP9_MOUSE Protein mono-ADP-ribosyltransferase PARP9 OS=Mus musculus OX=10090 GN=Parp9 PE=1 SV=2 Length=866 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/142 (34%), Positives = 64/142 (45%), Gaps = 16/142 (11%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH-CL 1115 VVNAAN L HG G+AG+L K +Q ES IA G + VGG + L H + Sbjct 137 VVNAANENLLHGSGLAGSLVKTGGFEIQEESKRIIANVGKISVGGIAITGAGRLPCHLII 196 Query 1116 HVVGPN---VNKGEDIQLLKSAYENFNQH--------EVLLAPLLSAGIFGADPIHSLRV 1164 H VGP N I+LLK A N + + + P LS+GIF L + Sbjct 197 HAVGPRWTVTNSQTAIELLKFAIRNILDYVTKYDLRIKTVAIPALSSGIFQ----FPLDL 252 Query 1165 CVDTVRTNVYLAVFDKNLYDKL 1186 C + + L DK ++ L Sbjct 253 CTSIILETIRLYFQDKQMFGNL 274 >sp|P27282|POLN_EEVVT Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain Trinidad donkey) OX=11038 PE=1 SV=3 Length=2493 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/141 (33%), Positives = 70/141 (50%), Gaps = 26/141 (18%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 1115 V++NAAN + GGGV GAL K + ++ P++VG + ++ G AKH + Sbjct 1347 VIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--AAKHII 1395 Query 1116 HVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIFGAD------PIH 1160 H VGPN NK +++ L AYE N N ++ + PLLS GIF + ++ Sbjct 1396 HAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLN 1455 Query 1161 SLRVCVDTVRTNVYLAVFDKN 1181 L +DT +V + DK Sbjct 1456 HLLTALDTTDADVAIYCRDKK 1476 >sp|P36328|POLN_EEVVP Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain P676) OX=36385 PE=1 SV=2 Length=2493 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/140 (33%), Positives = 70/140 (50%), Gaps = 26/140 (19%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 1115 V++NAAN + GGGV GAL K + ++ P++VG + ++ G AKH + Sbjct 1347 VIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--AAKHII 1395 Query 1116 HVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIFGAD------PIH 1160 H VGPN NK +++ L AYE N N ++ + PLLS GIF + ++ Sbjct 1396 HAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLN 1455 Query 1161 SLRVCVDTVRTNVYLAVFDK 1180 L +DT +V + DK Sbjct 1456 HLLTALDTTDADVAIYCRDK 1475 >sp|A7MG20|YMDB_CROS8 O-acetyl-ADP-ribose deacetylase OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=ymdB PE=3 SV=1 Length=180 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 47/158 (30%), Positives = 71/158 (45%), Gaps = 21/158 (13%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHC 1114 V+VNAAN L GGGV GA+++A A+ G + G + + +L AK Sbjct 19 VIVNAANPSLMGGGGVDGAIHRAAGPALLAACRQVRQQQGECQPGHAVITEAGDLAAKAV 78 Query 1115 LHVVGPNVNKGED--IQLLKSAYEN------FNQHEVLLAPLLSAGIFGADPIHSLRVCV 1166 +H VGP G+D QLL AY N N + + P +S GI+G + ++ Sbjct 79 VHTVGPVWRGGQDNEPQLLADAYRNSLQLVAANGYNSVAFPAISTGIYGYPKAAAAQIAF 138 Query 1167 DTVR---------TNVYLAVFDKN---LYDKLVSSFLE 1192 +TV VY +D+ LY +L+ + E Sbjct 139 ETVSDYLTRHPQPKQVYFVCYDEENFLLYQRLLGQYDE 176 >sp|E1SDF1|YMDB1_PANVC O-acetyl-ADP-ribose deacetylase 1 OS=Pantoea vagans (strain C9-1) OX=712898 GN=ymdB1 PE=3 SV=1 Length=171 Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 71/152 (47%), Gaps = 18/152 (12%) Query 1051 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL 1110 KV +VNAAN L GGGV GA+++A + E G KVG + + NL Sbjct 13 KVSAEAIVNAANSSLLGGGGVDGAIHRAGGPVILAECQLIRNRQGGCKVGDAVITGAGNL 72 Query 1111 -AKHCLHVVGPNVNKG--EDIQLLKSAYE------NFNQHEVLLAPLLSAGIFGADPIHS 1161 A + +H VGP + G ++ LLK AY+ +++ + + P +S GI+G + Sbjct 73 PADYVIHTVGPRWSDGRHDEDALLKRAYQSCFKLVDYHGIKTVSFPNISTGIYGFPKERA 132 Query 1162 LRVCVDTVR---------TNVYLAVFDKNLYD 1184 + +D ++ NV L FD YD Sbjct 133 ATIALDVIKHCIAENRTLENVNLVCFDAENYD 164 >sp|A8AI35|YMDB_CITK8 O-acetyl-ADP-ribose deacetylase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=ymdB PE=3 SV=1 Length=177 Score = 56.6 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 49/178 (28%), Positives = 84/178 (47%), Gaps = 29/178 (16%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++++ DI + + V+VNAAN L GGGV GA+++A + Sbjct 1 MKSRIHVQHGDITQ----LTVDVIVNAANASLLGGGGVDGAIHRAAGPTLLEACKKVRQQ 56 Query 1094 NGPLKVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYENFNQHEVLLA---- 1146 G G + + L+G+ AK +H VGP G+ + QLL+ AY FN +++LA Sbjct 57 QGECPAGHAVITLAGNLPAKAVIHTVGPVWRGGDHNESQLLEDAY--FNSLQLVLANGYR 114 Query 1147 ----PLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 1188 P +S G +G + + V+TV VY +D+ LY++L++ Sbjct 115 SVAFPAISTGAYGYPRPAAAEIAVNTVADFLARHALPEQVYFVCYDEETARLYERLLT 172 >sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032) OX=693216 GN=ymdB PE=3 SV=1 Length=176 Score = 56.2 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 21/163 (13%) Query 1051 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL 1110 ++ V+VNAAN L GGGV GA+++A ++ G + G + + +L Sbjct 14 RIDTDVIVNAANPSLMGGGGVDGAIHRAAGPSLLAACKVVRQQQGECQPGHAVITEAGDL 73 Query 1111 -AKHCLHVVGPNVNKGED--IQLLKSAYEN------FNQHEVLLAPLLSAGIFGADPIHS 1161 AK +H VGP G D QLL AY N N + + P +S GI+G + Sbjct 74 AAKAVIHTVGPIWRGGHDNEPQLLADAYRNSLELVTANGYNSVAFPAISTGIYGYPKAAA 133 Query 1162 LRVCVDTVR---------TNVYLAVFDKN---LYDKLVSSFLE 1192 ++ +TV VY +D+ LY +L+ + E Sbjct 134 AQIAFETVSDYLTRRPQPKQVYFVCYDEENFLLYQRLLGQYDE 176 >sp|P0A8D6|YMDB_ECOLI O-acetyl-ADP-ribose deacetylase OS=Escherichia coli (strain K12) OX=83333 GN=ymdB PE=1 SV=1 Length=177 Score = 55.8 bits (133), Expect = 8e-07, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 79/172 (46%), Gaps = 25/172 (15%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 +++ DI K+ V+VNAAN L GGGV GA+++A A+ G Sbjct 5 IHVVQGDIT----KLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDC 60 Query 1098 KVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPL 1148 G + + L+G AK +H VGP GE + QLL+ AY N N + + P Sbjct 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120 Query 1149 LSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 1188 +S G++G + + V TV VY +D+ +LY++L++ Sbjct 121 ISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLT 172 >sp|P0A8D7|YMDB_ECOL6 O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ymdB PE=3 SV=1 Length=177 Score = 55.8 bits (133), Expect = 8e-07, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 79/172 (46%), Gaps = 25/172 (15%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 +++ DI K+ V+VNAAN L GGGV GA+++A A+ G Sbjct 5 IHVVQGDIT----KLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDC 60 Query 1098 KVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPL 1148 G + + L+G AK +H VGP GE + QLL+ AY N N + + P Sbjct 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120 Query 1149 LSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 1188 +S G++G + + V TV VY +D+ +LY++L++ Sbjct 121 ISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLT 172 >sp|P0A8D8|YMDB_ECO57 O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O157:H7 OX=83334 GN=ymdB PE=3 SV=1 Length=177 Score = 55.8 bits (133), Expect = 8e-07, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 79/172 (46%), Gaps = 25/172 (15%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 +++ DI K+ V+VNAAN L GGGV GA+++A A+ G Sbjct 5 IHVVQGDIT----KLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDC 60 Query 1098 KVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPL 1148 G + + L+G AK +H VGP GE + QLL+ AY N N + + P Sbjct 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120 Query 1149 LSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 1188 +S G++G + + V TV VY +D+ +LY++L++ Sbjct 121 ISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLT 172 >sp|Q8V294|POLN_EEVVC Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain CPA201) OX=376610 PE=3 SV=3 Length=2497 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (49%), Gaps = 26/141 (18%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 1115 V+VNAAN + G GV GAL + + ++ P++VG + ++ G+ +KH + Sbjct 1347 VIVNAANSKGQPGSGVCGALYRKYPESFDLQ---------PIEVGKARLVKGN--SKHLI 1395 Query 1116 HVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIFGADP------IH 1160 H VGPN NK +++ L AYE N N + + PLLS GIF + ++ Sbjct 1396 HAVGPNFNKVSEVEGDKQLAEAYESIARIINDNNYRSVAIPLLSTGIFAGNKDRLMQSLN 1455 Query 1161 SLRVCVDTVRTNVYLAVFDKN 1181 L +DT +V + DK Sbjct 1456 HLLTALDTTDADVAIYCRDKK 1476 >sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonella agona (strain SL483) OX=454166 GN=ymdB PE=3 SV=1 Length=179 Score = 54.3 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 25/176 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G + G + + L AK +H VGP GE + +LL++AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEYQEAELLEAAYRNCLLLAEANHFRSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 1188 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLT 172 >sp|A4W960|YMDB_ENT38 O-acetyl-ADP-ribose deacetylase OS=Enterobacter sp. (strain 638) OX=399742 GN=ymdB PE=3 SV=1 Length=180 Score = 53.9 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 21/164 (13%) Query 1045 IVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV 1104 +V + ++ V+VNAAN L GGGV GA+++A + G G + + Sbjct 8 VVGDITTMEVDVIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQQGECAPGHAVI 67 Query 1105 -LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPLLSAGIFG 1155 ++G AK +H VGP GE + + L+ AY N N ++ L P +S G++G Sbjct 68 TIAGDLPAKAVIHAVGPVWQGGENHEARTLQDAYLNCLRLAAANGYKTLAFPAISTGVYG 127 Query 1156 ADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLV 1187 + + VDTV VY +D+ LY +L+ Sbjct 128 YPKAAAAEIAVDTVSEFLTRKPLPERVYFVCYDEENAQLYQRLL 171 >sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=ymdB PE=3 SV=1 Length=179 Score = 53.5 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 75/176 (43%), Gaps = 25/176 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 1188 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLT 172 >sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonella typhi OX=90370 GN=ymdB PE=3 SV=1 Length=179 Score = 53.5 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 75/176 (43%), Gaps = 25/176 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 1188 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLT 172 >sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiella variicola (strain At-22) OX=640131 GN=ymdB PE=3 SV=1 Length=175 Score = 53.1 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 45/156 (29%), Positives = 73/156 (47%), Gaps = 21/156 (13%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV-LSGHNLAKHC 1114 V+VNAAN L GGGV GA+++A A+ + G G + + ++G A Sbjct 19 VIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGDLPASAV 78 Query 1115 LHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPLLSAGIFGADPIHSLRVCV 1166 +H VGP + G+ + Q L AY+N N + + P +S G++G + + V Sbjct 79 IHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAISTGVYGYPKEEAAEIAV 138 Query 1167 DTV-----RTN----VYLAVFDKN---LYDKLVSSF 1190 TV R N V FD+ +Y +L++S+ Sbjct 139 RTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASY 174 >sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=ymdB PE=3 SV=1 Length=175 Score = 53.1 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 45/156 (29%), Positives = 73/156 (47%), Gaps = 21/156 (13%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV-LSGHNLAKHC 1114 V+VNAAN L GGGV GA+++A A+ + G G + + ++G A Sbjct 19 VIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGDLPASAV 78 Query 1115 LHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPLLSAGIFGADPIHSLRVCV 1166 +H VGP + G+ + Q L AY+N N + + P +S G++G + + V Sbjct 79 IHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAISTGVYGYPKEEAAEIAV 138 Query 1167 DTV-----RTN----VYLAVFDKN---LYDKLVSSF 1190 TV R N V FD+ +Y +L++S+ Sbjct 139 RTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASY 174 >sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonella newport (strain SL254) OX=423368 GN=ymdB PE=3 SV=1 Length=179 Score = 53.1 bits (126), Expect = 7e-06, Method: Composition-based stats. Identities = 47/176 (27%), Positives = 75/176 (43%), Gaps = 25/176 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 1188 P +S G++G + + V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEIAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLT 172 >sp|Q9WJC7|POLN_EEVVM Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain Mena II) OX=36384 PE=3 SV=3 Length=2499 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 26/141 (18%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCL 1115 V+VNAAN + G GV GAL + + ++ P++VG + ++ G +KH + Sbjct 1347 VIVNAANSKGQPGSGVCGALYRKYPESFDLQ---------PIEVGKARLVKGS--SKHII 1395 Query 1116 HVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIFGAD------PIH 1160 H VGPN +K +++ L AYE N N + + PLLS GIF + ++ Sbjct 1396 HAVGPNFSKVSEVEGDKQLAEAYESIAKIINDNNYRSVAIPLLSTGIFAGNKDRLMQSLN 1455 Query 1161 SLRVCVDTVRTNVYLAVFDKN 1181 L +DT +V + DK Sbjct 1456 HLLTALDTTDADVAIYCRDKK 1476 >sp|Q460N5|PAR14_HUMAN Protein mono-ADP-ribosyltransferase PARP14 OS=Homo sapiens OX=9606 GN=PARP14 PE=1 SV=3 Length=1801 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 14/124 (11%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHC 1114 VVVNA+N LKH GG+A AL+KA +Q + D + G L G + + L H Sbjct 818 VVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHV 877 Query 1115 LHVVGPNVNKGED---IQLLKSAYE------NFNQHEVLLAPLLSAGIFGADPIHSLRVC 1165 +H VGP + E + LL+ A + ++ + P +S+G+FG L C Sbjct 878 IHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFG----FPLGRC 933 Query 1166 VDTV 1169 V+T+ Sbjct 934 VETI 937 >sp|D5CE05|YMDB_ENTCC O-acetyl-ADP-ribose deacetylase OS=Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56) OX=716541 GN=ymdB PE=3 SV=1 Length=180 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 38/123 (31%), Positives = 60/123 (49%), Gaps = 9/123 (7%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV-LSGHNLAKHC 1114 V+VNAAN L GGGV GA+++A + G G + + L+G AK Sbjct 19 VIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQQGECPPGHAVITLAGDLPAKAV 78 Query 1115 LHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCV 1166 +H VGP + G+ + +L+ AY N N ++ + P +S G++G + + V Sbjct 79 IHAVGPIWHGGDRHEASILEEAYRNCLRLAADNGYKTMAFPAISTGVYGYPKAAAATIAV 138 Query 1167 DTV 1169 DTV Sbjct 139 DTV 141 >sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) OX=189518 GN=LA_4133 PE=4 SV=1 Length=175 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 82/172 (48%), Gaps = 31/172 (18%) Query 1045 IVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV 1104 I E+ +++ +VNAAN L GGGV GA+++A + E G KVG + + Sbjct 8 IKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGEAVI 67 Query 1105 LSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYENFNQHEVLLA----------PLLS 1150 + L AK +H VGP NK ED +LL +AY+N +LLA P +S Sbjct 68 TTAGRLNAKFIIHTVGPIWSGGNKNED-ELLSNAYKN----SLLLAKNHSLKTIAFPNIS 122 Query 1151 AGIFGADPIHSLRVCVDTVR---------TNVYLAVFD-KNL--YDKLVSSF 1190 GI+ + ++ + +V V+ FD +NL Y+KL+ ++ Sbjct 123 TGIYHFPKERAAKIAIQSVTEFLKQDNQIQTVFFVCFDFENLEIYNKLLQTY 174 >sp|Q72M93|Y3295_LEPIC Macro domain-containing protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=LIC_13295 PE=4 SV=1 Length=175 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 82/172 (48%), Gaps = 31/172 (18%) Query 1045 IVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV 1104 I E+ +++ +VNAAN L GGGV GA+++A + E G KVG + + Sbjct 8 IKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGECKVGEAVI 67 Query 1105 LSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYENFNQHEVLLA----------PLLS 1150 + L AK +H VGP NK ED +LL +AY+N +LLA P +S Sbjct 68 TTAGRLNAKFIIHTVGPIWSGGNKNED-ELLSNAYKN----SLLLAKNHSLKTIAFPNIS 122 Query 1151 AGIFGADPIHSLRVCVDTVRT---------NVYLAVFD-KNL--YDKLVSSF 1190 GI+ + ++ + +V V+ FD +NL Y+KL+ ++ Sbjct 123 TGIYHFPKERAAKIAIQSVTKFLKQDNQIQTVFFVCFDFENLEIYNKLLQTY 174 >sp|B5RBF3|YMDB_SALG2 O-acetyl-ADP-ribose deacetylase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=ymdB PE=3 SV=1 Length=179 Score = 51.6 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 47/176 (27%), Positives = 75/176 (43%), Gaps = 25/176 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G + G + + L AK +H VGP GE + +LL+ AY + N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRSCLLLAEANHFRSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 1188 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLT 172 >sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=ymdB PE=3 SV=2 Length=177 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/176 (27%), Positives = 77/176 (44%), Gaps = 25/176 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++ DI + A V +VNAAN L GGGV GA+++A + Sbjct 1 MKSRIHVLQGDITQLAVDV----IVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + NL A+ +H VGP GE + QLL AY N N ++ + Sbjct 57 QGECPTGHAVITIAGNLPARAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 1188 P +S G++G + + V TV +Y +D+ LY++L++ Sbjct 117 AFPAISTGVYGFPRAAAAEIAVKTVSDFITRHALPEQIYFVCYDEENSRLYNRLLT 172 >sp|Q0T5Z6|YMDB_SHIF8 O-acetyl-ADP-ribose deacetylase OS=Shigella flexneri serotype 5b (strain 8401) OX=373384 GN=ymdB PE=3 SV=1 Length=177 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 25/173 (14%) Query 1037 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 1096 +++ DI K+ V+VNAAN L GGGV GA+++A A+ G Sbjct 4 RIHVVQGDIT----KLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGD 59 Query 1097 LKVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAP 1147 G + + L+G AK +H VGP GE + QLL+ AY N N + + P Sbjct 60 CPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFP 119 Query 1148 LLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 1188 +S G++ + + V TV VY +D+ +LY++L++ Sbjct 120 AISTGVYSYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLT 172 >sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 OX=360393 GN=1a PE=3 SV=1 Length=4445 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 50/105 (48%), Gaps = 6/105 (6%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK--HC 1114 VVN AN LKHGGG+A ++ + S++YI L V + G L K Sbjct 1669 VVNPANNQLKHGGGIAKVISCMCGPKLTSWSNNYIKQYKKLGVTCAIRSPGFQLGKGVQI 1728 Query 1115 LHVVGPNVNKGEDIQLL----KSAYENFNQHEVLLAPLLSAGIFG 1155 +HVVGP + + L +S ++N +L +LS GIFG Sbjct 1729 IHVVGPKSADSDVVNKLEASWRSVFQNVKPDTTVLTSMLSTGIFG 1773 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 40/154 (26%), Positives = 76/154 (49%), Gaps = 15/154 (10%) Query 3047 IVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFL---MSFTVLCLTPVYSFLPG 3103 +V I IV L ++ F +++VV LLF+ M V+CL P+ +PG Sbjct 2944 VVLVAIFTIVFLFLLRMYIVMYSYFKVFTYVVF--KLLFVNTVMVLFVVCLPPL---VPG 2998 Query 3104 VYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKR 3163 V V L +L + V FL ++ + +F ++P++ + +++ + F+W + Sbjct 2999 VVFV----LALWLCDSVVFLLYLAVLSLF--ILPWFYVMLFVLIVGGFVFWWMMKSSDVV 3052 Query 3164 RVVFNGVSFS-TFEEAALCTFLLNKEMYLKLRSD 3196 + +G++F+ TFE+ + C F LN + +L D Sbjct 3053 HLTPDGLTFNGTFEQVSKCVFPLNPLIVNRLLLD 3086 >sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobacter rodentium (strain ICC168) OX=637910 GN=ymdB PE=3 SV=2 Length=177 Score = 50.1 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 45/176 (26%), Positives = 76/176 (43%), Gaps = 25/176 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++ + DI V +VNAAN L GGGV GA+++A + Sbjct 1 MNSRIHVIHGDIT----TVAVDAIVNAANPSLMGGGGVDGAIHRAAGPELLEACMTVRRQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + + L AK +H VGP GE + QLL AY N N ++ + Sbjct 57 QGECPPGHAVITAAGRLPAKAVIHTVGPIWRGGEHNEAQLLHDAYLNSLNLALANGYQSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVS 1188 P +S G++G + + V+T+ +Y +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVNTISEFITRRASPEQIYFVCYDEETTRLYQRLLT 172 >sp|Q32E73|YMDB_SHIDS O-acetyl-ADP-ribose deacetylase OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=ymdB PE=3 SV=1 Length=177 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/173 (28%), Positives = 77/173 (45%), Gaps = 25/173 (14%) Query 1037 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 1096 +++ DI K+ V+VN N L GGGV GA+++A A+ G Sbjct 4 RIHVVQGDIT----KLAVDVIVNVTNPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGD 59 Query 1097 LKVGGSCV-LSGHNLAKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAP 1147 G + + L+G AK +H VGP GE + QLL+ AY N N + + P Sbjct 60 CPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFP 119 Query 1148 LLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVS 1188 +S G++G + + V TV VY +D+ +LY++L++ Sbjct 120 AISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLT 172 >sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX=360393 GN=rep PE=2 SV=1 Length=6733 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 50/105 (48%), Gaps = 6/105 (6%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK--HC 1114 VVN AN LKHGGG+A ++ + S++YI L V + G L K Sbjct 1669 VVNPANNQLKHGGGIAKVISCMCGPKLTSWSNNYIKQYKKLGVTCAIRSPGFQLGKGVQI 1728 Query 1115 LHVVGPNVNKGEDIQLL----KSAYENFNQHEVLLAPLLSAGIFG 1155 +HVVGP + + L +S ++N +L +LS GIFG Sbjct 1729 IHVVGPKSADSDVVNKLEASWRSVFQNVKPDTTVLTSMLSTGIFG 1773 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 40/154 (26%), Positives = 76/154 (49%), Gaps = 15/154 (10%) Query 3047 IVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFL---MSFTVLCLTPVYSFLPG 3103 +V I IV L ++ F +++VV LLF+ M V+CL P+ +PG Sbjct 2944 VVLVAIFTIVFLFLLRMYIVMYSYFKVFTYVVF--KLLFVNTVMVLFVVCLPPL---VPG 2998 Query 3104 VYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKR 3163 V V L +L + V FL ++ + +F ++P++ + +++ + F+W + Sbjct 2999 VVFV----LALWLCDSVVFLLYLAVLSLF--ILPWFYVMLFVLIVGGFVFWWMMKSSDVV 3052 Query 3164 RVVFNGVSFS-TFEEAALCTFLLNKEMYLKLRSD 3196 + +G++F+ TFE+ + C F LN + +L D Sbjct 3053 HLTPDGLTFNGTFEQVSKCVFPLNPLIVNRLLLD 3086 >sp|Q8RHQ2|Y1951_FUSNN Uncharacterized protein FN1951 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=FN1951 PE=4 SV=1 Length=175 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 31/82 (38%), Positives = 45/82 (55%), Gaps = 7/82 (9%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCL 1115 +VNAAN L+ GGGV GA+ KA + + E + G G + + G+NL K+ + Sbjct 22 IVNAANSSLEMGGGVCGAIFKAAGSELAQECKEI----GGCNTGEAVITKGYNLPNKYII 77 Query 1116 HVVGPNVNKGE--DIQLLKSAY 1135 H VGP + GE + + L SAY Sbjct 78 HTVGPRYSTGENREAERLASAY 99 >sp|Q2EMV9|PAR14_MOUSE Protein mono-ADP-ribosyltransferase PARP14 OS=Mus musculus OX=10090 GN=Parp14 PE=1 SV=3 Length=1817 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 16/125 (13%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHC 1114 VVVNAAN LKH G+A AL+KA +Q E D + G + G + + L H Sbjct 829 VVVNAANENLKHISGLAQALSKAAGPELQTECDQIVKEGGVVLPGNAVISKAGKLPCHHV 888 Query 1115 LHVVGPNVNKGEDI--------QLLKSAYENFNQHEV--LLAPLLSAGIFGADPIHSLRV 1164 +H VGP KG+ + ++++ + +H + P +SAGIF L + Sbjct 889 IHAVGPRW-KGDKVLECVSLLKKVVRQSLSLAEEHRCRSIAMPAVSAGIFD----FPLEL 943 Query 1165 CVDTV 1169 CV + Sbjct 944 CVANI 948 >sp|Q8Q0F9|Y177_METMA Macro domain-containing protein MM_0177 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) OX=192952 GN=MM_0177 PE=4 SV=1 Length=187 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/165 (31%), Positives = 76/165 (46%), Gaps = 28/165 (17%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 1095 D + I DIV K++ +VNAAN L GGGV GA+++A A+ E NG Sbjct 19 DRIRIFEGDIV----KMRVDAIVNAANNTLLGGGGVDGAIHRAAGPALLEECK---TLNG 71 Query 1096 PLKVGGSCVLSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYENF------NQHEVLL 1145 G + + SG+ L AK+ +H VGP KGED +LL S Y + + + Sbjct 72 -CPTGEAKITSGYLLPAKYIIHTVGPVWQGGEKGED-ELLASCYRKSLELARDYKIKTIA 129 Query 1146 APLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN 1181 P +S G +G + + V V+ VYL ++K+ Sbjct 130 FPAISTGAYGFPSERAAGIAVSQVKEFLQKNEIPETVYLVCYNKD 174 >sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VPA0103 PE=4 SV=1 Length=170 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 41/138 (30%), Positives = 65/138 (47%), Gaps = 14/138 (10%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQ---VESDDYIATNGPLKVGGSCVLSGHNL-AK 1112 +VNAAN + GGGV GA+++A A+ DD P G + + NL A+ Sbjct 19 IVNAANPRMLGGGGVDGAIHRAAGPALINACYAVDDVDGIRCPF--GDARITEAGNLNAR 76 Query 1113 HCLHVVGPNVNKGEDIQ-LLKSAYEN------FNQHEVLLAPLLSAGIFGADPIHSLRVC 1165 + +H VGP +K D + +L+SAY+ N + + P +S G++G P + V Sbjct 77 YVIHAVGPIYDKFADPKTVLESAYQRSLDLALANHCQSVALPAISCGVYGYPPQEAAEVA 136 Query 1166 VDTVRTNVYLAVFDKNLY 1183 + + Y A D Y Sbjct 137 MAVCQRPEY-AALDMRFY 153 >sp|Q8RB30|Y995_CALS4 Macro domain-containing protein TTE0995 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=TTE0995 PE=4 SV=1 Length=175 Score = 47.4 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 47/154 (31%), Positives = 67/154 (44%), Gaps = 31/154 (20%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 1115 +VNAAN L GGGV GA++KA A+ E G G + + NL AK+ + Sbjct 20 IVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREKQGGCPTGHAVITGAGNLKAKYVI 79 Query 1116 HVVGP---NVNKGEDIQLLKSAY-------ENFNQHEVLLAPLLSAGIFGADPIHSLRVC 1165 H VGP N ED LL SAY + +N + P +S G +G + R+ Sbjct 80 HAVGPIWKGGNHNED-NLLASAYIESLKLADEYNVKTIAF-PSISTGAYGFPVERAARIA 137 Query 1166 VDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQV 1199 + ++VS +LE S K+V Sbjct 138 L------------------RVVSDYLEGSSIKEV 153 >sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) OX=188937 GN=MA_1614 PE=4 SV=1 Length=195 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 51/166 (31%), Positives = 78/166 (47%), Gaps = 22/166 (13%) Query 1018 PVVQTIEVNSFSGYLKLTDN---VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGA 1074 P + ++ NS L ++ N + I DI E +K +VNAAN L GGGV GA Sbjct 6 PYKKELKRNSRKRSLNMSQNSERIRIIERDITE----LKVDAIVNAANNTLLGGGGVDGA 61 Query 1075 LNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGP---NVNKGEDIQL 1130 +++A + E NG G + + G+ L AK+ +H VGP KGED + Sbjct 62 IHRAAGPGLLEECR---TLNG-CPTGEAKITKGYLLPAKYVIHTVGPIWQEGTKGED-EF 116 Query 1131 LKSAY----ENFNQHEV--LLAPLLSAGIFGADPIHSLRVCVDTVR 1170 L S Y E +++V + P +S G +G + R+ V V+ Sbjct 117 LASCYRKSLELARKYDVKTIAFPTISTGAYGFPSERAARIAVSQVK 162 >sp|Q8IXQ6|PARP9_HUMAN Protein mono-ADP-ribosyltransferase PARP9 OS=Homo sapiens OX=9606 GN=PARP9 PE=1 SV=2 Length=854 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/142 (31%), Positives = 65/142 (46%), Gaps = 16/142 (11%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCL 1115 VVNAAN L HGGG+A AL KA +Q ES ++A G + G V L K + Sbjct 135 VVNAANEDLLHGGGLALALVKAGGFEIQEESKQFVARYGKVSAGEIAVTGAGRLPCKQII 194 Query 1116 HVVGPNVNKGE------DIQLLKSAYENF----NQH-EVLLAPLLSAGIFGADPIHSLRV 1164 H VGP + + +Q + N+ N H + + P LS+GIF L + Sbjct 195 HAVGPRWMEWDKQGCTGKLQRAIVSILNYVIYKNTHIKTVAIPALSSGIFQ----FPLNL 250 Query 1165 CVDTVRTNVYLAVFDKNLYDKL 1186 C T+ + +++ K + L Sbjct 251 CTKTIVETIRVSLQGKPMMSNL 272 >sp|E1PL40|YMDB2_PANVC O-acetyl-ADP-ribose deacetylase 2 OS=Pantoea vagans (strain C9-1) OX=712898 GN=ymdB2 PE=3 SV=1 Length=171 Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 66/151 (44%), Gaps = 18/151 (12%) Query 1052 VKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL- 1110 + ++N AN L GGGV GA+++A + E + G KVG + + L Sbjct 14 IASEAIINVANSSLLGGGGVDGAIHRAGGPVILAECQAIRSRQGGCKVGEAVITGAGTLP 73 Query 1111 AKHCLHVVGPNVNKG---EDIQLLK---SAYENFNQHEVLLA--PLLSAGIFG------- 1155 A + +H VGP + G ED QL S ++ H + P +S GI+G Sbjct 74 ADYVIHTVGPRWSDGRHNEDTQLKSVYLSCFKLVGHHGIKTVSFPNISTGIYGFPKKRAA 133 Query 1156 ADPIHSLRVCVDTVRT--NVYLAVFDKNLYD 1184 A + ++ C+ RT V L FD YD Sbjct 134 AIALDVIKHCIAENRTIEKVNLVCFDAENYD 164 >sp|Q8BCR0|POLN_RUBVN Non-structural polyprotein p200 OS=Rubella virus (strain RN-UK86) OX=376267 PE=3 SV=1 Length=2116 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 62/154 (40%), Gaps = 18/154 (12%) Query 1031 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 1090 Y + V+++ DI++ K VVVNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL 869 Query 1091 IATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------ 1138 P G + GH H +H V P + E LL+ AY + Sbjct 870 ----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAA 925 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 1172 + + PLL AG++G SLR + RT Sbjct 926 RRWACVACPLLGAGVYGWSAAESLRAALAATRTE 959 >sp|Q8Y2K1|Y334_RALN1 Macro domain-containing protein RSc0334 OS=Ralstonia nicotianae (strain GMI1000) OX=267608 GN=RSc0334 PE=4 SV=1 Length=171 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 40/123 (33%), Positives = 63/123 (51%), Gaps = 13/123 (11%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 1115 +VNAAN L GGGV GA+++A + + A +G + G + + G L A++ + Sbjct 23 IVNAANSALLGGGGVDGAIHRAAGPELL---EACRALHG-CRTGQAKITPGFLLPARYII 78 Query 1116 HVVGPNVNKG--EDIQLLKSAYEN----FNQHEV--LLAPLLSAGIFGADPIHSLRVCVD 1167 H VGP G ++ LL + Y N QH+V + P +S G++G P + + V Sbjct 79 HTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTGVYGFPPQLAAPIAVR 138 Query 1168 TVR 1170 TVR Sbjct 139 TVR 141 >sp|P13889|POLN_RUBVT Non-structural polyprotein p200 OS=Rubella virus (strain Therien) OX=11045 PE=3 SV=5 Length=2116 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 61/154 (40%), Gaps = 18/154 (12%) Query 1031 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 1090 Y + V+++ DI++ K VVVNAAN L G GV GA+ A+ Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAANCRRL 869 Query 1091 IATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------ 1138 P G + GH H +H V P + E LL+ AY + Sbjct 870 ----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAA 925 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 1172 + + PLL AG++G SLR + RT Sbjct 926 RRWACVACPLLGAGVYGWSAAESLRAALAATRTE 959 >sp|Q9EYI6|Y189_STRNO Macro domain-containing protein in sno 5'region OS=Streptomyces nogalater OX=38314 PE=4 SV=1 Length=181 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 47/144 (33%), Positives = 67/144 (47%), Gaps = 16/144 (11%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT--NGPLKVGGSCVLSGHNL-AKH 1113 +VNAAN L GGGV GA+++ A+ E A+ L G + + +L A+ Sbjct 19 LVNAANSSLLGGGGVDGAIHRRGGPAILAECRALRASRYGEGLPTGRAVATTAGDLDARW 78 Query 1114 CLHVVGPNVNKGED-IQLLKSAY-ENFNQHEVLLA-----PLLSAGIFGADPIHSLRVCV 1166 +H VGP + ED LL S Y E+ L A P LS G++ + R+ V Sbjct 79 VIHTVGPVWSSTEDRSDLLASCYRESLRLAGELGARTVAFPALSTGVYRWPMGDAARIAV 138 Query 1167 DTVRTN------VYLAVFDKNLYD 1184 +TVRT V +FD + YD Sbjct 139 ETVRTTPTAVEEVRFVLFDTHAYD 162 >sp|O40955|POLN_RUBVR Non-structural polyprotein p200 OS=Rubella virus (strain RA27/3 vaccine) OX=11044 PE=1 SV=1 Length=2116 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/154 (28%), Positives = 60/154 (39%), Gaps = 18/154 (12%) Query 1031 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 1090 Y + V+++ DI++ K VVVNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL 869 Query 1091 IATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENFNQHEVL 1144 P G + GH H +H V P + E LL+ AY + Sbjct 870 ----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAA 925 Query 1145 LA------PLLSAGIFGADPIHSLRVCVDTVRTN 1172 PLL AG++G SLR + RT Sbjct 926 RRWARVACPLLGAGVYGWSAAESLRAALAATRTE 959 >sp|Q97AU0|Y719_THEVO Uncharacterized protein TV0719 OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) OX=273116 GN=TV0719 PE=4 SV=1 Length=186 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 57/110 (52%), Gaps = 12/110 (11%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP--LKVGGSCVLSGHNL-AKH 1113 +VNAAN L GGGV GA++ + +E + T P L G + + SG L AK+ Sbjct 26 IVNAANPSLMGGGGVDGAIHLKGGKTIDLECAELRRTKWPKGLPPGEADITSGGKLKAKY 85 Query 1114 CLHVVGPNVNKG--EDIQLLKSAY----ENFNQHEV--LLAPLLSAGIFG 1155 +H VGP + +G ED + L S+Y E H + + P +S GI+G Sbjct 86 VIHTVGP-IYRGQEEDAETLYSSYYRSLEIAKIHGIKCIAFPAISTGIYG 134 >sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=CT2219 PE=4 SV=1 Length=172 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 66/148 (45%), Gaps = 19/148 (13%) Query 1034 LTDNVYIK--NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 + DNV I ADI + +VNAAN L GGGV GA+++A + + Sbjct 1 MPDNVLIHAIKADITS----LTVDAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACREL- 55 Query 1092 ATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN-----FNQHEV 1143 G G + + G+ L A +H VGP + G + +LL S Y N H Sbjct 56 ---GGCLTGEAKITKGYRLPATFVIHTVGPVWHGGNHGEAELLASCYRNSLKLAIEHHCR 112 Query 1144 LLA-PLLSAGIFGADPIHSLRVCVDTVR 1170 +A P +S GI+G + + + TVR Sbjct 113 TIAFPSISTGIYGYPVEQAAAIAITTVR 140 >sp|Q985D2|Y7730_RHILO Macro domain-containing protein mll7730 OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=mll7730 PE=4 SV=1 Length=176 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 19/132 (14%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 K D + I DI K+ +VNAAN L GGGV GA+++A ++VE Sbjct 3 KALDRIRIHTGDIT----KLDVDAIVNAANTLLLGGGGVDGAIHRAAGRELEVECR---M 55 Query 1093 TNGPLKVGGSCVLSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYEN------FNQHE 1142 NG KVG + + G+ L A+H +H VGP KGE +LL S Y + N Sbjct 56 LNG-CKVGDAKITKGYKLPARHIIHTVGPVWQGGGKGE-AELLASCYRSSLELAAANDCR 113 Query 1143 VLLAPLLSAGIF 1154 + P +S G++ Sbjct 114 SVAFPAISTGVY 125 >sp|Q93SX7|Y189_ACISE Macro domain-containing protein OS=Acinetobacter sp. (strain ED45-25) OX=194927 PE=4 SV=1 Length=183 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 61/140 (44%), Gaps = 21/140 (15%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V++ ADI A +VN+AN L GGG+ ++K M+ E G Sbjct 4 VHLIQADITAFAVHA----IVNSANKSLLGGGGLDYVIHKKAGPLMKEECVRLNQEKGGC 59 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENFNQHEVLLAPLLSAGIF 1154 G + V + NL AK+ +H VGP GE + QLL AY N +F Sbjct 60 PTGQAEVTTAGNLPAKYLIHAVGPRWLDGEHNEPQLLCDAYSN--------------ALF 105 Query 1155 GADPIHSLRVCVDTVRTNVY 1174 A+ IH+L V + T VY Sbjct 106 KANEIHALTVSFPCISTGVY 125 >sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) OX=220668 GN=lp_3408 PE=4 SV=1 Length=172 Score = 43.9 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 19/116 (16%) Query 1051 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL---KVGGSCVLSG 1107 K+ +VNAAN L GGGV GA+++A A+ +A PL G + + G Sbjct 13 KMTVDAIVNAANTSLLGGGGVDGAIHRAAGPAL-------LAACRPLHGCATGEAKITPG 65 Query 1108 HNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPLLSAGIF 1154 L AK+ +H GP G+ ++QLL ++Y N N + + P +S G++ Sbjct 66 FRLPAKYVIHTPGPVWQGGQHNELQLLANSYRNSLNLAAENHCQTVAFPSISTGVY 121 >sp|O59182|Y1513_PYRHO Uncharacterized protein PH1513 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=PH1513 PE=4 SV=1 Length=190 Score = 43.5 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 35/165 (21%) Query 1051 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQ------------------VESDDYIA 1092 K + +VNAAN YL+HGGGVA A+ KA + + +E + + Sbjct 14 KFRAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYTRISKEEMRRQLGKDWIEHGEVVV 73 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGP------NVNKGEDIQL-LKSAYENFNQHEV-- 1143 T P+K+ N K+ +H VGP + +K E ++L + A + ++ V Sbjct 74 TP-PMKL-------KENGVKYVIHTVGPYCGGVWSKDKEEKLKLAILGALKKADELGVKS 125 Query 1144 LLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS 1188 + P +SAGI+G +R + V+ + +A K +Y L S Sbjct 126 IAFPAISAGIYGCPLKEVVRTFKEVVKEFLKVANHVKEVYLVLYS 170 >sp|Q9V0Y3|Y656_PYRAB Uncharacterized protein PYRAB06560 OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=PYRAB06560 PE=4 SV=2 Length=183 Score = 43.1 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 28/162 (17%) Query 1051 KVKPTVVVNAANVYLKHGGGVAGALNKA----TNNAMQVESDDYIATNGP--LKVGGSCV 1104 + K +VNAAN YL+HGGGVA A+ KA + +++ ++ G ++ G V Sbjct 11 RFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIGRDWIEHGEVVV 70 Query 1105 LSGHNLA----KHCLHVVGP------NVNKGEDIQL-LKSAYENFNQHEV--LLAPLLSA 1151 NLA K+ +H VGP + +K + ++L + A + ++ V + P +SA Sbjct 71 TPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGVRSIAFPAISA 130 Query 1152 GIFGA---DPIHSLRVCVDTVR------TNVYLAVFDKNLYD 1184 GI+G + + + ++ V+ T+VYL ++ + Y+ Sbjct 131 GIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYE 172 >sp|P27283|POLN_SINDO Polyprotein P1234 OS=Sindbis virus subtype Ockelbo (strain Edsbyn 82-5) OX=31699 PE=3 SV=2 Length=2515 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (45%), Gaps = 34/167 (20%) Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 1102 AD EEA VVNAAN + G GV A+ K N+ T+ + G + Sbjct 1359 ADCQEEA-------VVNAANPLGRPGEGVCRAIYKRWPNSF---------TDSATETGTA 1402 Query 1103 CVLSGHNLAKHCLHVVGPNVNK---GEDIQLLKSAYEN----FNQHEV--LLAPLLSAGI 1153 + H K +H VGP+ K E ++LL++AY N+H + + PLLS GI Sbjct 1403 KLTVCH--GKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGI 1460 Query 1154 FGADP------IHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMK 1194 + A ++ L +D +V + DK ++ + + L++K Sbjct 1461 YAAGKDRLEVSLNCLTTALDRTDADVTIYCLDKKWKER-IDAVLQLK 1506 >sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=XCC3184 PE=4 SV=1 Length=179 Score = 42.7 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 38/127 (30%), Positives = 59/127 (46%), Gaps = 13/127 (10%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP---LKVGGSCVLSGHNL-A 1111 V+VNAAN L GGGV GA+++A + +E+ + + P G + G +L A Sbjct 17 VIVNAANESLLGGGGVDGAIHRAAGPRL-LEACEALPEVRPGVRCPTGEIRITDGFDLKA 75 Query 1112 KHCLHVVGPNVNKG---EDIQLLKSAYENFNQHEVLLA-----PLLSAGIFGADPIHSLR 1163 +H H VGP G E QL +++ E ++ P +S GI+G + R Sbjct 76 RHIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLYQAAR 135 Query 1164 VCVDTVR 1170 + V R Sbjct 136 IAVTETR 142 >sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=XAC3343 PE=4 SV=2 Length=179 Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 15/128 (12%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP---LKVGGSCVLSGHNL-A 1111 V+VNAAN L GGGV GA+++A + +E+ + + P G + G +L A Sbjct 17 VIVNAANESLLGGGGVDGAIHRAAGPRL-LEACEALPQVRPGVRCPTGEIRITDGFDLKA 75 Query 1112 KHCLHVVGPNVNKG---EDIQLLKSAYENFNQHEVLLA-----PLLSAGIFGADPIH-SL 1162 +H H VGP G E QL +++ E ++ P +S GI+G P+H + Sbjct 76 RHIFHTVGPVWRDGRHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGY-PLHQAA 134 Query 1163 RVCVDTVR 1170 R+ V R Sbjct 135 RIAVTETR 142 >sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=Ta1105 PE=4 SV=2 Length=196 Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 19/128 (15%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAM-----QVESDDYIATNGPLKVGGSCVLSGHNL- 1110 +VNAAN L GGGV GA++ A + ++ + Y NG L G + + G+ L Sbjct 26 IVNAANSSLMGGGGVDGAIHSAAGPELNGELVKIRRERY--PNG-LPPGEAVITRGYRLK 82 Query 1111 AKHCLHVVGP---NVNKGEDIQLLKS------AYENFNQHEVLLAPLLSAGIFGADPIHS 1161 A H +H VGP GED L +S F H++ P LS G +G + Sbjct 83 ASHIIHTVGPVWMGGRNGEDDVLYRSYRSCLDLAREFGIHDIAF-PALSTGAYGFPFDRA 141 Query 1162 LRVCVDTV 1169 R+ + +V Sbjct 142 ERIAIRSV 149 >sp|Q99IE7|POLN_RUBVO Non-structural polyprotein p200 OS=Rubella virus (strain TO-336 vaccine) OX=376265 PE=3 SV=1 Length=2116 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 60/151 (40%), Gaps = 18/151 (12%) Query 1017 TPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALN 1076 TP + + Y + V+++ DI++ K VVVNAAN L G GV GA+ Sbjct 798 TPTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIF 855 Query 1077 KATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQL 1130 A+ + P G + GH H +H V P + E L Sbjct 856 ANATAALAADCRRL----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEAL 911 Query 1131 LKSAYENF------NQHEVLLAPLLSAGIFG 1155 L+ AY + + + PLL AG++G Sbjct 912 LERAYRSIVALAAARRWACVACPLLGAGVYG 942 >sp|Q99IE5|POLN_RUBVV Non-structural polyprotein p200 OS=Rubella virus (strain TO-336) OX=376264 PE=3 SV=1 Length=2116 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 60/151 (40%), Gaps = 18/151 (12%) Query 1017 TPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALN 1076 TP + + Y + V+++ DI++ K VVVNAAN L G GV GA+ Sbjct 798 TPTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIF 855 Query 1077 KATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQL 1130 A+ + P G + GH H +H V P + E L Sbjct 856 ANATAALAADCRRL----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEAL 911 Query 1131 LKSAYENF------NQHEVLLAPLLSAGIFG 1155 L+ AY + + + PLL AG++G Sbjct 912 LERAYRSIVALAAARRWACVACPLLGAGVYG 942 >sp|Q6X2U2|POLN_RUBVC Non-structural polyprotein p200 OS=Rubella virus (strain BRDII) OX=376263 PE=3 SV=1 Length=2116 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 44/165 (27%), Positives = 69/165 (42%), Gaps = 22/165 (13%) Query 1007 EVQPQLEME----LTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAAN 1062 + +P++ E TP + + Y + V+++ +I++ K VVVNAAN Sbjct 784 DAEPEVACEPGGPATPARADPDSDIVESYARAAGPVHLRVRNIMDPPPGCK--VVVNAAN 841 Query 1063 VYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPN 1121 L G GV GA+ A+ A E +A P G + GH H +H V P Sbjct 842 EGLLAGSGVCGAIF-ASAAASLAEDCRRLA---PCPTGEAVATPGHGCGYAHIIHAVAPR 897 Query 1122 VNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFG 1155 + + LL+ AY + + + PLL AGI+G Sbjct 898 RPQDPAALEQSEALLERAYRSIVALAAARRWTCVACPLLGAGIYG 942 >sp|Q6X2U4|POLN_RUBVB Non-structural polyprotein p200 OS=Rubella virus (strain BRD1) OX=376262 PE=3 SV=1 Length=2116 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 44/165 (27%), Positives = 69/165 (42%), Gaps = 22/165 (13%) Query 1007 EVQPQLEME----LTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAAN 1062 + +P++ E TP + + Y + V+++ +I++ K VVVNAAN Sbjct 784 DAEPEVACEPGGPATPTRADPDSDIVESYARAAGPVHLRVRNIMDPPPGCK--VVVNAAN 841 Query 1063 VYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPN 1121 L G GV GA+ A+ A E +A P G + GH H +H V P Sbjct 842 EGLLAGSGVCGAIF-ASAAATLAEDCRRLA---PCPTGEAVATPGHGCGYTHIIHAVAPR 897 Query 1122 VNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFG 1155 + + LL+ AY + + + PLL AGI+G Sbjct 898 RPQDPAALEQSEALLERAYRSVVALAAARRWACVACPLLGAGIYG 942 >sp|Q86924|POLN_AURAV Polyprotein P1234 OS=Aura virus OX=44158 PE=3 SV=3 Length=2499 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 35/183 (19%) Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 1102 AD EEA VVNAAN K G GV A+ K + + N +V + Sbjct 1357 ADCTEEA-------VVNAANARGKPGDGVCRAIFKKWPKSFE---------NATTEVETA 1400 Query 1103 CVLSGHNLAKHCLHVVGPNVNK---GEDIQLLKSAYEN----FNQHEV--LLAPLLSAGI 1153 + HN K +H VGP+ K E +LL++AY + N+ + + PLLS GI Sbjct 1401 VMKPCHN--KVVIHAVGPDFRKYTLEEATKLLQNAYHDVAKIVNEKGISSVAIPLLSTGI 1458 Query 1154 F--GADPIH-SLR---VCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIP 1207 + GAD + SLR +D +V + DK +++ ++ + M+ E+ E K +I Sbjct 1459 YAAGADRLDLSLRCLFTALDRTDADVTIYCLDKK-WEQRIADAIRMR-EQVTELKDPDIE 1516 Query 1208 KEE 1210 +E Sbjct 1517 IDE 1519 >sp|Q6PAV8|MACD2_XENLA ADP-ribose glycohydrolase MACROD2 OS=Xenopus laevis OX=8355 GN=macrod2 PE=2 SV=1 Length=418 Score = 43.1 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 42/204 (21%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 1115 +VNAAN L GGGV G +++A+ ++ E + G + G + + G+ L AK+ + Sbjct 85 IVNAANTSLLGGGGVDGCIHRASGPSLLAECREL----GGCETGQAKITCGYELPAKYVI 140 Query 1116 HVVGPNVNKGE----DIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVC 1165 H VGP + +G Q L S Y + N + P +S GI+G + V Sbjct 141 HTVGP-IARGHITPNHKQDLASCYNSSLTLATENDIRTIAFPCISTGIYGYPNEPAANVA 199 Query 1166 VDTVRT----------NVYLAVF---DKNLYDKLVSSFL--EMKSEKQVEQKIAEIPKEE 1210 + TV+ V VF D +Y + ++ F + +++ E+ ++ KE+ Sbjct 200 LTTVKEFLKKNRDKIDRVIFCVFLEVDFKIYKRKLNEFFPKDGGDDEEGEKGDSDEMKED 259 Query 1211 VKPFITESKPS------VEQRKQD 1228 TE KP ++++K+D Sbjct 260 -----TEGKPQSPPMKKIKEKKED 278 >sp|Q9BQ69|MACD1_HUMAN ADP-ribose glycohydrolase MACROD1 OS=Homo sapiens OX=9606 GN=MACROD1 PE=1 SV=2 Length=325 Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 24/150 (16%) Query 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 V +E + +L + + + +DI K++ +VNAAN L GGGV G +++A Sbjct 135 VAVKVEEPRYKKDKQLNEKISLLRSDIT----KLEVDAIVNAANSSLLGGGGVDGCIHRA 190 Query 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE----DIQLLKS 1133 + D T K G + + G+ L AK+ +H VGP + GE L+S Sbjct 191 AGPLLT----DECRTLQSCKTGKAKITGGYRLPAKYVIHTVGP-IAYGEPSASQAAELRS 245 Query 1134 AYENFNQHEVLLA--------PLLSAGIFG 1155 Y + ++LL P +S G+FG Sbjct 246 CY--LSSLDLLLEHRLRSVAFPCISTGVFG 273 >sp|Q7MTZ7|MACRO_PORGI Macro domain-containing protein PG1779 OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) OX=242619 GN=PG_1779 PE=2 SV=1 Length=164 Score = 41.2 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 36/122 (30%), Positives = 59/122 (48%), Gaps = 13/122 (11%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 1115 +VNAAN L GGGV GA+++A + E NG G S + G+NL A++ + Sbjct 19 IVNAANHTLLGGGGVDGAIHRAAGPELLEECR---TLNG-CPTGESKITGGYNLPAQYVI 74 Query 1116 HVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVD 1167 H VGP + G+ + +LL S Y + + P +S G++ + R+ + Sbjct 75 HTVGPVWHGGQHGEPELLASCYRTSLSIALDKGLKSIAFPCISTGVYRYPKDQAARIALA 134 Query 1168 TV 1169 T+ Sbjct 135 TI 136 >sp|Q9ZBG3|Y6450_STRCO Macro domain-containing protein SCO6450 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=SCO6450 PE=4 SV=1 Length=169 Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 16/148 (11%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN--GPLKVGGSCVLSGHNL-AKH 1113 +VNAAN L GGGV GA+++ A+ E A + L G + + +L A+ Sbjct 19 IVNAANSSLLGGGGVDGAIHRRGGPAILAECRRLRAGHLGKGLPTGRAVATTAGDLDARW 78 Query 1114 CLHVVGPNVNKGEDIQ-LLKSAY-ENFNQHEVLLA-----PLLSAGIFGADPIHSLRVCV 1166 +H VGP + ED LL S Y E+ + L A P +S G++ + R+ V Sbjct 79 VIHTVGPVWSATEDRSGLLASCYRESLRTADELGARTVAFPAISTGVYRWPMDDAARIAV 138 Query 1167 DTVRTN------VYLAVFDKNLYDKLVS 1188 +TV T + +FD Y+ + Sbjct 139 ETVATTKTSVTEIRFVLFDARAYEAFAA 166 >sp|Q86500|POLN_RUBVM Non-structural polyprotein p200 OS=Rubella virus (strain M33) OX=11043 PE=1 SV=2 Length=2116 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/137 (28%), Positives = 55/137 (40%), Gaps = 18/137 (13%) Query 1031 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 1090 Y + V+++ DI++ K VVVNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL 869 Query 1091 IATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENFNQHEVL 1144 P +G + GH H +H V P + E LL+ AY + Sbjct 870 ----APCPIGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAA 925 Query 1145 LA------PLLSAGIFG 1155 PLL AG++G Sbjct 926 RRWARVACPLLGAGVYG 942 >sp|Q9J6K9|POLN_RUBVD Non-structural polyprotein p200 OS=Rubella virus (strain Cendehill) OX=376266 PE=3 SV=2 Length=2116 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/137 (28%), Positives = 56/137 (41%), Gaps = 18/137 (13%) Query 1031 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 1090 Y + V+++ DI++ K VVVNAAN L G GV GA+ A+ + Sbjct 812 YARAAGPVHLRVRDIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL 869 Query 1091 IATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------ 1138 P G + GH H +H V P + E LL+ AY + Sbjct 870 ----APCPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAA 925 Query 1139 NQHEVLLAPLLSAGIFG 1155 + + PLL AG++G Sbjct 926 RRWAYVACPLLGAGVYG 942 >sp|Q8K4G6|MACD1_RAT ADP-ribose glycohydrolase MACROD1 (Fragment) OS=Rattus norvegicus OX=10116 GN=Macrod1 PE=2 SV=2 Length=258 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 67/150 (45%), Gaps = 22/150 (15%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +L + + + DI K++ +VNAAN L GGGV G +++A + + D Sbjct 82 QLNEKISLFRGDIT----KLEVDAIVNAANNSLLGGGGVDGCIHRAAGSLLT----DECR 133 Query 1093 TNGPLKVGGSCVLSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYENFNQHEVLLA-- 1146 T + G + + G+ L AKH +H VGP L+S Y + ++LL Sbjct 134 TLQNCETGKAKITCGYRLPAKHVIHTVGPIAVGQPTASQAAELRSCY--LSSLDLLLEHR 191 Query 1147 ------PLLSAGIFGADPIHSLRVCVDTVR 1170 P +S G+FG + V + T+R Sbjct 192 LRSVAFPCISTGVFGYPNEEAAEVVLATLR 221 >sp|P03317|POLN_SINDV Polyprotein P1234 OS=Sindbis virus OX=11034 PE=1 SV=2 Length=2513 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 33/184 (18%) Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 1102 AD EEA VVNAAN + G GV A+ K + D G ++ Sbjct 1359 ADCQEEA-------VVNAANPLGRPGEGVCRAIYKRWPTSFT----DSATETGTARMT-V 1406 Query 1103 CVLSGHNLAKHCLHVVGPNVNK---GEDIQLLKSAYEN----FNQHEV--LLAPLLSAGI 1153 C L K +H VGP+ K E ++LL++AY N+H + + PLLS GI Sbjct 1407 C------LGKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGI 1460 Query 1154 FGADP------IHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIP 1207 + A ++ L +D +V + DK +++ ++ +S +++ + EI Sbjct 1461 YAAGKDRLEVSLNCLTTALDRTDADVTIYCLDKKWKERIDAALQLKESVTELKDEDMEID 1520 Query 1208 KEEV 1211 E V Sbjct 1521 DELV 1524 >sp|Q306W6|POLN_EEEV1 Polyprotein P1234 OS=Eastern equine encephalitis virus (strain PE-0.0155) OX=374596 PE=1 SV=3 Length=2471 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 49/183 (27%), Positives = 75/183 (41%), Gaps = 48/183 (26%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHC- 1114 V+VNAAN + G GV GAL K A P+ G + +L KH Sbjct 1345 VIVNAANNKGQPGAGVCGALYKKWPGAFD---------KAPIATGTA------HLVKHTP 1389 Query 1115 --LHVVGPNVNKGEDI---QLLKSAYE------NFNQHEVLLAPLLSAGIF--GADPI-- 1159 +H VGPN ++ ++ Q L Y N ++ + PLLS G++ G D + Sbjct 1390 NIIHAVGPNFSRMSEVEGNQKLSEVYMDIAKIINKERYNKVSIPLLSTGVYAGGKDRVMQ 1449 Query 1160 --HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITE 1217 + L +DT +V + DK E +++ IA KE V+ + + Sbjct 1450 SLNHLFTAMDTTDADVTIYCLDKQW-------------ETRIKDAIAR--KESVEELVED 1494 Query 1218 SKP 1220 KP Sbjct 1495 DKP 1497 >sp|O28751|Y1521_ARCFU ADP-ribose glycohydrolase AF_1521 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=AF_1521 PE=1 SV=2 Length=192 Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 68/152 (45%), Gaps = 30/152 (20%) Query 1057 VVNAANVYLKHGGGVAGALNKA-----------TNNAMQVE-SDDYIATNGPLKVGGSCV 1104 +VNAAN L+HGGGVA A+ KA + AM+ + DYI +G + V + Sbjct 29 IVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYI-DHGEVVVTPAMN 87 Query 1105 LSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF---------NQHEVLLAPLLSAGIFG 1155 L + K+ H VGP + +L + Y+ F E + P +SAGI+G Sbjct 88 LEERGI-KYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYG 146 Query 1156 ADPIHSLRVCVDTVRT-------NVYLAVFDK 1180 D + ++ V+ V L ++D+ Sbjct 147 CDLEKVVETFLEAVKNFKGSAVKEVALVIYDR 178 >sp|Q44020|YGB2_CUPNE Macro domain-containing protein in gbd 3'region OS=Cupriavidus necator OX=106590 PE=4 SV=1 Length=173 Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 39/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 1115 +VNAAN L GGGV GA++ A +A++ T G G + + +G +L A + + Sbjct 21 IVNAANSGLLGGGGVDGAIHGAGGSAIKEACRAIRDTQGGCPTGEAVITTGGHLPAPYVI 80 Query 1116 HVVGP---NVNKGEDIQLLKSAYEN----FNQHEV--LLAPLLSAGIFG 1155 H VGP ++GED +LL +AY N QH + L P +S GI+ Sbjct 81 HAVGPVWQGGDQGED-ELLANAYRNSIRLAAQHHLRRLAFPNISTGIYA 128 >sp|Q9YBE9|Y1648_AERPE Uncharacterized protein APE_1648.1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) OX=272557 GN=APE_1648.1 PE=4 SV=2 Length=189 Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 24/67 (36%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query 1051 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL 1110 KV+ VVN AN + GGG AGAL +A + ++ E+ P+ VG + + SG +L Sbjct 20 KVRAEAVVNPANSLMIMGGGAAGALKRAGGSVIEEEA----MRKAPVPVGEAVITSGGSL 75 Query 1111 -AKHCLH 1116 A+ +H Sbjct 76 PARFVIH 82 >sp|Q2KHU5|MACD1_BOVIN ADP-ribose glycohydrolase MACROD1 OS=Bos taurus OX=9913 GN=MACROD1 PE=2 SV=1 Length=325 Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust. Identities = 41/148 (28%), Positives = 67/148 (45%), Gaps = 20/148 (14%) Query 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 V +E + +L + + + DI K++ +VNAAN L GGGV G +++A Sbjct 135 VTVKVEEPKYKKDKQLNEKISLFRGDIT----KLEVDAIVNAANSSLLGGGGVDGCIHRA 190 Query 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE----DIQLLKS 1133 + D T + G + + G+ L AK+ +H VGP + GE L+S Sbjct 191 AGPLLT----DECRTLQNCETGKAKITCGYRLPAKYVIHTVGP-IAHGEPSASQAAELRS 245 Query 1134 AY----ENFNQHEVLLA--PLLSAGIFG 1155 Y + +H + A P +S G+FG Sbjct 246 CYLSSLDLLLEHRLRSAAFPCISTGVFG 273 >sp|P13896|POLN_WEEV Polyprotein P1234 OS=Western equine encephalitis virus OX=11039 PE=3 SV=3 Length=2467 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 33/157 (21%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH--- 1113 +VNAAN + G GV GAL + A + P+ VG + L KH Sbjct 1346 IVNAANSKGQPGSGVCGALYRKWPAAFDRQ---------PIAVGTA------RLVKHEPL 1390 Query 1114 CLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVLLAPLLSAGIF--GADPI--- 1159 +H VGPN +K + + L +AY N + + PLLS GI+ G D + Sbjct 1391 IIHAVGPNFSKMPEPEGDLKLAAAYMSIASIVNAERITKISVPLLSTGIYSGGKDRVMQS 1450 Query 1160 -HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKS 1195 H L DT +V + DK +++ + +S Sbjct 1451 LHHLFTAFDTTDADVTIYCLDKQWETRIIEAIHRKES 1487 >sp|Q9VHM2|VP35L_DROME VPS35 endosomal protein sorting factor-like OS=Drosophila melanogaster OX=7227 GN=CG8202 PE=2 SV=3 Length=942 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/97 (29%), Positives = 44/97 (45%), Gaps = 13/97 (13%) Query 3702 DDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLA------ 3755 DD R++ L+NV ++KV++GN L+Q +S + SN V T++ A Sbjct 609 DDERRQIAQLINVF--IHKVHFGNDLEQQLSFYVEARGTFSNLDAVYVTLVHAACKLATR 666 Query 3756 -----RGIVFMCVEYCPIFFITGNTLQCIMLVYCFLG 3787 G V C+ YC I + +Q M +Y G Sbjct 667 NRSKSTGFVKACIAYCFITIPSIEAVQQQMNLYLLCG 703 >sp|Q306W8|POLN_EEEV8 Polyprotein P1234 OS=Eastern equine encephalitis virus (strain PE-3.0815) OX=374597 PE=1 SV=3 Length=2474 Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust. Identities = 49/182 (27%), Positives = 74/182 (41%), Gaps = 48/182 (26%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHC-- 1114 +VNAAN + G GV GAL K A P+ G + +L KH Sbjct 1346 IVNAANNKGQPGAGVCGALYKKWPGAFD---------KVPIATGTA------HLVKHTPN 1390 Query 1115 -LHVVGPNVNKGEDI---QLLKSAYE------NFNQHEVLLAPLLSAGIF--GADPI--- 1159 +H VGPN ++ ++ Q L Y N ++ + PLLS GI+ G D + Sbjct 1391 IIHAVGPNFSRVSEVEGNQKLSEVYMDIAKIINRERYNKVSIPLLSTGIYAGGKDRVMQS 1450 Query 1160 -HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES 1218 + L +DT +V + DK E +++ IA KE V+ + + Sbjct 1451 LNHLFTAMDTTDADVTIYCLDKQW-------------EARIKDAIAR--KESVEELVEDD 1495 Query 1219 KP 1220 KP Sbjct 1496 KP 1497 >sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian hepatitis E virus (isolate Chicken/California/Meng) OX=516993 GN=ORF1 PE=3 SV=1 Length=1531 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 37/161 (23%), Positives = 63/161 (39%), Gaps = 26/161 (16%) Query 1057 VVNAANVYLKHGGGVAGALNK-------ATNNAMQVESDDYIATNGPLKVGGSCVLSGHN 1109 +VN AN + GGG+ G ++ + + I GP KV Sbjct 640 LVNPANRDHQPGGGLCGMFHRRWPHLWPVCGEVQDLPTGPVIFQQGPPKV---------- 689 Query 1110 LAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ-HEVLLAPLLSAGIFGADPIHSLRVCVDT 1168 +H GP+ D L+ Y +Q H + +PL+SAGI+ A S T Sbjct 690 -----IHAPGPDYRIKPDPDGLRRVYAVVHQAHGTVASPLISAGIYRAPARESFEAWAAT 744 Query 1169 VRTNVYLAV---FDKNLYDKLVSSFLEMKSEKQVEQKIAEI 1206 R L V +++ D +++ E V++ +A++ Sbjct 745 ARDGDLLVVQRSMAQHIRDFVLNEGRHRPRELHVDRAMADM 785 >sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=PA3693 PE=4 SV=1 Length=173 Score = 38.1 bits (87), Expect = 0.83, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 51/112 (46%), Gaps = 21/112 (19%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL---KVGGSCVLSGHNL-AK 1112 +VNAAN L GGGV GA+++A + +A L K G + + G L A Sbjct 19 IVNAANSSLLGGGGVDGAIHRAAGAEL-------VAACRLLHGCKTGEAKITRGFRLPAA 71 Query 1113 HCLHVVGPNVNKGE--DIQLLKSAY-------ENFNQHEVLLAPLLSAGIFG 1155 H +H VGP G+ + +LL S Y E V P +S GI+G Sbjct 72 HVIHTVGPVWRGGDNGEAELLASCYRRSLALAEQAGAASVAF-PAISCGIYG 122 >sp|Q922B1|MACD1_MOUSE ADP-ribose glycohydrolase MACROD1 OS=Mus musculus OX=10090 GN=Macrod1 PE=1 SV=2 Length=323 Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 75/172 (44%), Gaps = 24/172 (14%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +L + + + DI K++ +VNAAN L GGGV G +++A + + D Sbjct 147 QLNEKISLYRGDIT----KLEVDAIVNAANSSLLGGGGVDGCIHRAAGSLLT----DECR 198 Query 1093 TNGPLKVGGSCVLSGHNL-AKHCLHVVGP---NVNKGEDIQLLKSAYENFNQHEVLLA-- 1146 T + G + + G+ L AK+ +H VGP L+S Y + ++LL Sbjct 199 TLQNCETGKAKITCGYRLPAKYVIHTVGPIAVGQPTASQAAELRSCY--LSSLDLLLEHR 256 Query 1147 ------PLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLE 1192 P +S G+FG + V + ++R +L + ++ FLE Sbjct 257 LRSVAFPCISTGVFGYPNEEAAEVVLASLRE--WLEQHKDKVDRLIICVFLE 306 >sp|Q9RUV0|PPDE_DEIRA Phosphatase/phosphodiesterase DR_1281 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) OX=243230 GN=DR_1281 PE=1 SV=1 Length=255 Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 37/110 (34%), Positives = 47/110 (43%), Gaps = 21/110 (19%) Query 2858 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 2911 I R + + PG PG RT NG+ L + L RVF AV N T L+E D T Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143 Query 2912 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYES 2947 AE T K+A G VP DT +L+G AY++ Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT 192 >sp|Q4QXJ8|POLN_EEEVF Polyprotein P1234 OS=Eastern equine encephalitis virus (strain Florida 91-469) OX=374598 PE=1 SV=3 Length=2494 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 43/167 (26%), Positives = 71/167 (43%), Gaps = 39/167 (23%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH-- 1113 V+VNAAN + G GV GAL + A + P+ G + +L KH Sbjct 1345 VIVNAANNKGQPGSGVCGALYRKWPGAFDKQ---------PVATGKA------HLVKHSP 1389 Query 1114 -CLHVVGPN---VNKGEDIQLLKSAY---------ENFNQHEVLLAPLLSAGIF--GADP 1158 +H VGPN +++ E Q L Y E F + + PLLS GI+ G D Sbjct 1390 NVIHAVGPNFSRLSENEGDQKLSEVYMDIARIINNERFTKVSI---PLLSTGIYAGGKDR 1446 Query 1159 I----HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQ 1201 + + L +DT ++ + DK ++ + +S +++ + Sbjct 1447 VMQSLNHLFTAMDTTDADITIYCLDKQWESRIKEAITRKESVEELTE 1493 >sp|Q9KHE2|Y189_STRGR Macro domain-containing protein in non 5'region OS=Streptomyces griseus OX=1911 PE=4 SV=1 Length=177 Score = 36.6 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 43/145 (30%), Positives = 62/145 (43%), Gaps = 17/145 (12%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT--NGPLKVGGSCVLSGHNL-AK 1112 V+VNAAN L GGGV GA+++ + + A+ L G + + L A+ Sbjct 23 VIVNAANSSLLGGGGVDGAIHRRGGPDILAACRELRASRYGKGLPTGQAVATTAGRLDAR 82 Query 1113 HCLHVVGPNVNKGEDIQ-LLKSAY-ENFNQHEVLLA-----PLLSAGIFGADPIHSLRVC 1165 +H VGP + +D LL S Y E+ L A P +S GI+G R+ Sbjct 83 WIVHTVGPVFSGAQDRSALLASCYRESLRLAAELGARSIAFPAISTGIYGWPMDDGARIA 142 Query 1166 VDTVRT-------NVYLAVFDKNLY 1183 V TV V +FD + Y Sbjct 143 VRTVLAETVEPVEEVRFVLFDAHAY 167 >sp|P26627|R1AB_CVMJD Replicase polyprotein 1ab (Fragment) OS=Murine coronavirus (strain defective JHM) OX=11143 GN=rep PE=3 SV=1 Length=500 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 45/183 (25%), Positives = 74/183 (40%), Gaps = 15/183 (8%) Query 1596 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLR-VEAFEYYHTTDPSFLGRYMSALNHTK 1654 P ++ D+ K++ E +T P D T V AF+ ++ S S H K Sbjct 316 PDQVEAFDIEKVEDSILSELQTELNAPADKTYEDVLAFDAIYSETLSAFYAVPSDETHFK 375 Query 1655 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 1714 V G S NC+L + L+ +Q + L+F +Q + +AG F + Sbjct 376 ------VCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKL 429 Query 1715 LAYCNKT-VGELGDVRETMSYLFQHANLDSC--KRVLNVVCKTCGQQQTTLKGVEAVMYM 1771 + K+ + G +Y F L C K N C CG + L+G++AV + Sbjct 430 VKSAPKSIILPQGGYVADFAYFF----LSQCSFKVHANWRCLKCG-MELKLQGLDAVFFY 484 Query 1772 GTL 1774 G + Sbjct 485 GDV 487 >sp|Q7TZB9|Y1934_MYCBO Uncharacterized protein Mb1934c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=lppD PE=4 SV=1 Length=358 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 24/83 (29%), Positives = 44/83 (53%), Gaps = 6/83 (7%) Query 1036 DNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN 1094 DNV + ++ + + K++ + NAAN L+H GGVA A+ +A +Q ES + Sbjct 184 DNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTE----K 239 Query 1095 GPLKVGGSC-VLSGHNLAKHCLH 1116 P+ +G + +G A++ +H Sbjct 240 APIGLGEAVETTAGDMPARYVIH 262 >sp|P9WK29|Y1899_MYCTU Uncharacterized protein Rv1899c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv1899c PE=1 SV=1 Length=359 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 24/83 (29%), Positives = 44/83 (53%), Gaps = 6/83 (7%) Query 1036 DNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN 1094 DNV + ++ + + K++ + NAAN L+H GGVA A+ +A +Q ES + Sbjct 185 DNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTE----K 240 Query 1095 GPLKVGGSC-VLSGHNLAKHCLH 1116 P+ +G + +G A++ +H Sbjct 241 APIGLGEAVETTAGDMPARYVIH 263 >sp|P9WK28|Y1899_MYCTO Uncharacterized protein MT1950 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1950 PE=4 SV=1 Length=374 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 24/83 (29%), Positives = 44/83 (53%), Gaps = 6/83 (7%) Query 1036 DNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN 1094 DNV + ++ + + K++ + NAAN L+H GGVA A+ +A +Q ES + Sbjct 200 DNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTE----K 255 Query 1095 GPLKVGGSC-VLSGHNLAKHCLH 1116 P+ +G + +G A++ +H Sbjct 256 APIGLGEAVETTAGDMPARYVIH 278 >sp|A0A0D2UG83|H2AY_CAPO3 Histone macroH2A1.1 OS=Capsaspora owczarzaki (strain ATCC 30864) OX=595528 GN=CAOG_004778 PE=1 SV=1 Length=368 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 29/91 (32%), Positives = 46/91 (51%), Gaps = 5/91 (5%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L L +Y+ N D+ E V+ VV+ N + G V GA+ A + E + Y+ Sbjct 191 LHLGQTLYVVNGDLTE----VRCDAVVHPTNGTMSFAGQVGGAIRAAAGAGVDAEVNSYM 246 Query 1092 ATNGPLKVGGSCVLSGHNL-AKHCLHVVGPN 1121 + + L+V + + SGHNL +K +HV PN Sbjct 247 SEHSQLQVTKAAITSGHNLPSKWIVHVHSPN 277 >sp|Q8Y3S3|Y2759_LISMO Macro domain-containing protein lmo2759 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=lmo2759 PE=4 SV=1 Length=176 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 27/175 (15%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 + I DI E+ + V+VNAAN L GGGV GA+++A + E + I G Sbjct 3 ITIVKGDITEQ----EVDVIVNAANSGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSC 58 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLA--------PL 1148 G + + S +L A + +H VGP GE + K A + ++ P Sbjct 59 PAGEAVITSAGDLKATYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPN 118 Query 1149 LSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDK---NLYDKLVSS 1189 +S G++G + V + TVR + FD+ LY+KL++S Sbjct 119 ISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIKEIRFVCFDEENLKLYNKLINS 173 >sp|Q926Y8|Y2902_LISIN Macro domain-containing protein lin2902 OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=lin2902 PE=4 SV=1 Length=176 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 45/157 (29%), Positives = 68/157 (43%), Gaps = 23/157 (15%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH-C 1114 V+VNAAN L GGGV GA+++A + E + I G G + + S +L H Sbjct 17 VIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSCPAGEAVITSAGDLKAHFI 76 Query 1115 LHVVGPNVNKGEDIQLLKSAYENFNQHEVLLA--------PLLSAGIFGADPIHSLRVCV 1166 +H VGP GE + K A + ++ P +S G++G + V + Sbjct 77 IHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAEVAL 136 Query 1167 DTVR-----------TNVYLAVFDKN---LYDKLVSS 1189 TVR V FD+ LY+KL++S Sbjct 137 YTVRKWAEEEYDSSIKEVRFVCFDEENLTLYNKLINS 173 >sp|Q3UYG8|MACD2_MOUSE ADP-ribose glycohydrolase MACROD2 OS=Mus musculus OX=10090 GN=Macrod2 PE=1 SV=1 Length=475 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 38/112 (34%), Positives = 55/112 (49%), Gaps = 18/112 (16%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHC 1114 +VNAAN L GGGV G +++A + E + NG + G + + G++L AK+ Sbjct 86 AIVNAANASLLGGGGVDGCIHRAAGPCLLAECRNL---NG-CETGHAKITCGYDLPAKYV 141 Query 1115 LHVVGP------NVNKGEDI-----QLLKSAYENFNQHEVLLAPLLSAGIFG 1155 +H VGP N + ED+ LK EN N V P +S GI+G Sbjct 142 IHTVGPIARGHINGSHKEDLANCYQSSLKLVKEN-NLRSVAF-PCISTGIYG 191 >sp|B4S3G9|PDXJ_PROA2 Pyridoxine 5'-phosphate synthase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) OX=290512 GN=pdxJ PE=3 SV=1 Length=236 Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 33/119 (28%), Positives = 49/119 (41%), Gaps = 16/119 (13%) Query 2021 TSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDII-LKP 2079 T FD+++ D C +KPV + +E + E + +I+ L Sbjct 100 TEGGFDIIRHYDT------LCRYIKPVQDAGIEVSIFIEPEEEAIERAASAGAEIVELHT 153 Query 2080 ANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTI 2138 SLK T T+LM I+K +R GL+ +A HGL N VP+ TI Sbjct 154 GPYSLKKTPAELETELM---------RIRKAATFARSRGLRVVAGHGLDYFNIVPFRTI 203 >sp|A1Z1Q3|MACD2_HUMAN ADP-ribose glycohydrolase MACROD2 OS=Homo sapiens OX=9606 GN=MACROD2 PE=1 SV=2 Length=425 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 34/110 (31%), Positives = 56/110 (51%), Gaps = 14/110 (13%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHC 1114 +VNAAN L GGGV G +++A + E + NG G + + G++L AK+ Sbjct 86 AIVNAANASLLGGGGVDGCIHRAAGPCLLAECRNL---NG-CDTGHAKITCGYDLPAKYV 141 Query 1115 LHVVGP------NVNKGEDI-QLLKSAYENFNQHEV--LLAPLLSAGIFG 1155 +H VGP N + ED+ KS+ + ++ + + P +S GI+G Sbjct 142 IHTVGPIARGHINGSHKEDLANCYKSSLKLVKENNIRSVAFPCISTGIYG 191 >sp|Q71W03|Y2748_LISMF Macro domain-containing protein LMOf2365_2748 OS=Listeria monocytogenes serotype 4b (strain F2365) OX=265669 GN=LMOf2365_2748 PE=4 SV=1 Length=176 Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 69/157 (44%), Gaps = 23/157 (15%) Query 1056 VVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHC 1114 V+VNAAN L GGGV GA+++A + E + I G G + + S +L A + Sbjct 17 VIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGTCPAGEAVITSAGDLQASYI 76 Query 1115 LHVVGPNVNKGEDIQLLKSAYENFNQHEVLLA--------PLLSAGIFGADPIHSLRVCV 1166 +H VGP GE + K A + ++ P +S G++G + V + Sbjct 77 IHAVGPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPNISTGVYGFPKKLAAEVAL 136 Query 1167 DTVRT-----------NVYLAVFDKN---LYDKLVSS 1189 TVR + FD+ LY+KL++S Sbjct 137 YTVRKWAEEEYDTSIEEIRFVCFDEENLKLYNKLINS 173 >sp|Q3ZX83|TIG_DEHMC Trigger factor OS=Dehalococcoides mccartyi (strain CBDB1) OX=255470 GN=tig PE=3 SV=1 Length=447 Score = 36.6 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 57/115 (50%), Gaps = 9/115 (8%) Query 3926 DINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAY----EQAVANGDSEVVLKKLK 3981 +++++ E+ L + EF ++ S Q+ Y EQ VA S +VL KL Sbjct 308 ELDQIIEQQLQRLQSNVKSPEEFRAMLSQMTPEDMQQRYRPLAEQRVA---SSLVLGKLA 364 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQ--MYKQARSEDKRAKVTSAMQTMLF 4034 + N+ ++ + DA +++ + D+ + +Y Q+ + D+ ++ +A +TM F Sbjct 365 TTENLVPNDEEVDAEIEKLITDAGDKKEEEKALYNQSETRDRLIQLLTARKTMAF 419 >sp|P43349|TCTP_SOLTU Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN=TCTP PE=2 SV=2 Length=168 Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 13/99 (13%) Query 423 WVPRASA--NIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 WV + + NIG N + G EG++D +++ ++IV F+L E+ A F Sbjct 35 WVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKV-------VDIVDTFRLQEQPAFDKKQF 87 Query 481 SASTSAFVET----VKGLDYKAFKQIVESCGNFKVTKGK 515 +++ ++G +AFK+ +ES F ++K K Sbjct 88 VTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLK 126 >sp|B0C385|RPOC2_ACAM1 DNA-directed RNA polymerase subunit beta' OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpoC2 PE=3 SV=1 Length=1330 Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 12/82 (15%) Query 1045 IVEEAKKVKPTVVVNAANVYLKHGGGVAG--ALNKATNNAMQVESDDYI----------A 1092 +VEE +++ P VV + K GG V G + N+AT + + DD I A Sbjct 860 LVEEGQQIDPGAVVARTEIKAKQGGKVRGIRSGNEATRRILLMTDDDLITIETQGKATSA 919 Query 1093 TNGPLKVGGSCVLSGHNLAKHC 1114 + G L G V +G +A+ C Sbjct 920 SEGELLRAGDEVAAGVTVAESC 941 >sp|Q751L1|RL43_EREGS Large ribosomal subunit protein eL43 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RPL43 PE=3 SV=1 Length=92 Score = 33.1 bits (74), Expect = 9.5, Method: Composition-based stats. Identities = 19/52 (37%), Positives = 26/52 (50%), Gaps = 3/52 (6%) Query 506 CGNFKVTKGKAKKGAWNIGE-QKSILSPLYAFASEAARVVRSIFSRTLETAQ 556 CG V +G A G WN +K++ Y F++ AA VRS R E A+ Sbjct 42 CGKKAVKRGAA--GIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAE 91 >sp|Q5JER1|Y1890_THEKO Uncharacterized protein TK1890 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=TK1890 PE=4 SV=1 Length=180 Score = 34.7 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 74/159 (47%), Gaps = 32/159 (20%) Query 1057 VVNAANVYLKHGGGVAGALN-----------KATNNAMQVE-SDDYIATNGPLKVGGSCV 1104 +VNAAN YL+HGGGVA A+ + + AM+ + D+I +G + V + Sbjct 19 IVNAANRYLEHGGGVAYAIAKAAAGDPREYIRISKEAMREQLGKDHI-EHGEVVVTPAMR 77 Query 1105 LSGHNLAKHCLHVVGPNV----NKGEDIQLLKSAYENFNQHE-----VLLAPLLSAGIFG 1155 L H + ++ +H VGP ++ + +L K+ + E + P +SAGI+G Sbjct 78 LEKHGI-RYVIHTVGPYCGGIWDEDKKEKLRKAILGALRKAEELGVKTIAFPAVSAGIYG 136 Query 1156 A---DPIHSLRVCVDTVR------TNVYLAVFDKNLYDK 1185 + + + + +D VYL ++ + Y++ Sbjct 137 CPLEEVVKTFKEVIDEFEREAGSVERVYLVLYSEKDYER 175 >sp|Q8U0P9|Y1536_PYRFU Uncharacterized protein PF1536 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=PF1536 PE=4 SV=1 Length=183 Score = 35.0 bits (79), Expect = 10.0, Method: Composition-based stats. Identities = 44/165 (27%), Positives = 76/165 (46%), Gaps = 32/165 (19%) Query 1051 KVKPTVVVNAANVYLKHGGGVAGALN-----------KATNNAMQVE-SDDYIATNGPLK 1098 K + +VNAAN YL+HGGGVA A+ + + AM+ + D+I +G + Sbjct 11 KFRAEAIVNAANKYLEHGGGVAYAIAKAAAGDVREYIRISKEAMREQLGKDWI-DHGEVV 69 Query 1099 VGGSCVLSGHNLAKHCLHVVGP------NVNKGEDIQL-LKSAYENFNQHEV--LLAPLL 1149 V L N K+ +H VGP + +K ++L + A + ++ V + P + Sbjct 70 VTPPLQLE-KNGVKYVIHTVGPYCGGSWDEDKKSKLKLAILGALKKADELGVKSIAFPAI 128 Query 1150 SAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDK 1185 SAGI+G + V+ V+ V+L ++ + Y+K Sbjct 129 SAGIYGCPLEKVVETFVEVVKEFLPSAKSLREVFLVLYSQEDYEK 173 Lambda K H a alpha 0.320 0.135 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 542934664668 Results from round 2 Query= YP_009725295.1 orf1a polyprotein [Severe acute respiratory syndrome coronavirus 2] Length=4405 Score E Sequences producing significant alignments: (Bits) Value Sequences used in model and found again: sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp... 6156 0.0 sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 6152 0.0 sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi... 6110 0.0 sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 6100 0.0 sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H... 6084 0.0 sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2... 6083 0.0 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 6078 0.0 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 6072 0.0 sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R... 6066 0.0 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 6055 0.0 sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H... 4665 0.0 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 4660 0.0 sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H... 4355 0.0 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 4349 0.0 sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi... 3851 0.0 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 3844 0.0 sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H... 3744 0.0 sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1... 3742 0.0 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 3742 0.0 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 3740 0.0 sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru... 3674 0.0 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 3674 0.0 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 3669 0.0 sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus... 3669 0.0 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 3666 0.0 sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru... 3666 0.0 sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru... 3546 0.0 sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru... 3546 0.0 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 3541 0.0 sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 3541 0.0 sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus... 3519 0.0 sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus... 3516 0.0 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 3515 0.0 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 3513 0.0 sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus... 3509 0.0 sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus... 3508 0.0 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 3506 0.0 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 3506 0.0 sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus... 3505 0.0 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 3503 0.0 sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus... 3503 0.0 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 3501 0.0 sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious ... 2695 0.0 sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious b... 2695 0.0 sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 2687 0.0 sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 2687 0.0 sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious b... 2674 0.0 sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 2667 0.0 sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus... 2615 0.0 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 2613 0.0 sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5... 2612 0.0 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 2608 0.0 sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss... 2606 0.0 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 2602 0.0 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 2602 0.0 sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ... 2602 0.0 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 2599 0.0 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 2589 0.0 sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus... 2588 0.0 sp|A7MG20|YMDB_CROS8 O-acetyl-ADP-ribose deacetylase OS=Cronobact... 193 1e-54 sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobact... 191 3e-54 sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherich... 188 8e-53 sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobact... 187 1e-52 sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonell... 187 1e-52 sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonell... 187 1e-52 sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonell... 187 2e-52 sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonell... 187 2e-52 sp|B5RBF3|YMDB_SALG2 O-acetyl-ADP-ribose deacetylase OS=Salmonell... 185 5e-52 sp|A8AI35|YMDB_CITK8 O-acetyl-ADP-ribose deacetylase OS=Citrobact... 184 2e-51 sp|P0A8D6|YMDB_ECOLI O-acetyl-ADP-ribose deacetylase OS=Escherich... 183 3e-51 sp|P0A8D7|YMDB_ECOL6 O-acetyl-ADP-ribose deacetylase OS=Escherich... 183 3e-51 sp|P0A8D8|YMDB_ECO57 O-acetyl-ADP-ribose deacetylase OS=Escherich... 183 3e-51 sp|Q0T5Z6|YMDB_SHIF8 O-acetyl-ADP-ribose deacetylase OS=Shigella ... 182 9e-51 sp|A4W960|YMDB_ENT38 O-acetyl-ADP-ribose deacetylase OS=Enterobac... 179 1e-49 sp|D5CE05|YMDB_ENTCC O-acetyl-ADP-ribose deacetylase OS=Enterobac... 178 1e-49 sp|Q32E73|YMDB_SHIDS O-acetyl-ADP-ribose deacetylase OS=Shigella ... 177 3e-49 sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiell... 177 3e-49 sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiell... 177 3e-49 sp|E1SDF1|YMDB1_PANVC O-acetyl-ADP-ribose deacetylase 1 OS=Pantoe... 174 2e-48 sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=... 169 2e-46 sp|Q72M93|Y3295_LEPIC Macro domain-containing protein LIC_13295 O... 169 2e-46 sp|Q96XY5|Y2383_SULTO Uncharacterized protein STK_23830 OS=Sulfur... 166 4e-45 sp|Q97UU4|Y2899_SACS2 Uncharacterized protein SSO2899 OS=Saccharo... 161 1e-43 sp|Q8RB30|Y995_CALS4 Macro domain-containing protein TTE0995 OS=C... 161 2e-43 sp|Q8ZXT3|Y1111_PYRAE Uncharacterized protein PAE1111 OS=Pyrobacu... 160 4e-43 sp|E1PL40|YMDB2_PANVC O-acetyl-ADP-ribose deacetylase 2 OS=Pantoe... 159 7e-43 sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=... 158 3e-42 sp|Q8Q0F9|Y177_METMA Macro domain-containing protein MM_0177 OS=M... 157 7e-42 sp|Q4J9D2|Y1252_SULAC Uncharacterized protein Saci_1252 OS=Sulfol... 154 5e-41 sp|Q8Y2K1|Y334_RALN1 Macro domain-containing protein RSc0334 OS=R... 144 1e-37 sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=... 144 1e-37 sp|Q9WYX8|Y508_THEMA Uncharacterized protein TM_0508 OS=Thermotog... 156 2e-37 sp|Q8RHQ2|Y1951_FUSNN Uncharacterized protein FN1951 OS=Fusobacte... 137 2e-35 sp|Q460N5|PAR14_HUMAN Protein mono-ADP-ribosyltransferase PARP14 ... 141 1e-31 sp|Q2EMV9|PAR14_MOUSE Protein mono-ADP-ribosyltransferase PARP14 ... 139 5e-31 sp|Q8CAS9|PARP9_MOUSE Protein mono-ADP-ribosyltransferase PARP9 O... 137 6e-31 sp|P0C6F3|R1A_BEV Replicase polyprotein 1a OS=Berne virus OX=1115... 138 1e-30 sp|Q8IXQ6|PARP9_HUMAN Protein mono-ADP-ribosyltransferase PARP9 O... 137 1e-30 sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11... 138 2e-30 sp|Q8BCR0|POLN_RUBVN Non-structural polyprotein p200 OS=Rubella v... 128 1e-27 sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 OX=3... 126 7e-27 sp|P27282|POLN_EEVVT Polyprotein P1234 OS=Venezuelan equine encep... 126 7e-27 sp|P36328|POLN_EEVVP Polyprotein P1234 OS=Venezuelan equine encep... 126 7e-27 sp|P36327|POLN_EEVV3 Polyprotein P1234 OS=Venezuelan equine encep... 126 8e-27 sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX... 126 8e-27 sp|Q8V294|POLN_EEVVC Polyprotein P1234 OS=Venezuelan equine encep... 123 4e-26 sp|Q9WJC7|POLN_EEVVM Polyprotein P1234 OS=Venezuelan equine encep... 123 4e-26 Sequences not found previously or not previously below threshold: sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=C... 152 2e-40 sp|Q7MTZ7|MACRO_PORGI Macro domain-containing protein PG1779 OS=P... 145 4e-38 sp|Q8Y3S3|Y2759_LISMO Macro domain-containing protein lmo2759 OS=... 145 7e-38 sp|Q71W03|Y2748_LISMF Macro domain-containing protein LMOf2365_27... 144 1e-37 sp|Q926Y8|Y2902_LISIN Macro domain-containing protein lin2902 OS=... 144 2e-37 sp|Q9ZBG3|Y6450_STRCO Macro domain-containing protein SCO6450 OS=... 142 6e-37 sp|Q9KHE2|Y189_STRGR Macro domain-containing protein in non 5'reg... 142 6e-37 sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=P... 142 6e-37 sp|Q93SX7|Y189_ACISE Macro domain-containing protein OS=Acinetoba... 141 1e-36 sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=... 139 7e-36 sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=... 139 8e-36 sp|Q9EYI6|Y189_STRNO Macro domain-containing protein in sno 5'reg... 139 1e-35 sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=... 138 1e-35 sp|Q44020|YGB2_CUPNE Macro domain-containing protein in gbd 3'reg... 137 3e-35 sp|Q6PAV8|MACD2_XENLA ADP-ribose glycohydrolase MACROD2 OS=Xenopu... 145 3e-35 sp|Q97AU0|Y719_THEVO Uncharacterized protein TV0719 OS=Thermoplas... 136 1e-34 sp|Q985D2|Y7730_RHILO Macro domain-containing protein mll7730 OS=... 134 6e-34 sp|Q8K4G6|MACD1_RAT ADP-ribose glycohydrolase MACROD1 (Fragment) ... 134 3e-33 sp|Q9BQ69|MACD1_HUMAN ADP-ribose glycohydrolase MACROD1 OS=Homo s... 136 5e-33 sp|Q922B1|MACD1_MOUSE ADP-ribose glycohydrolase MACROD1 OS=Mus mu... 135 7e-33 sp|A1Z1Q3|MACD2_HUMAN ADP-ribose glycohydrolase MACROD2 OS=Homo s... 138 7e-33 sp|Q3UYG8|MACD2_MOUSE ADP-ribose glycohydrolase MACROD2 OS=Mus mu... 139 8e-33 sp|Q9RS39|Y2288_DEIRA Macro domain-containing protein DR_2288 OS=... 129 2e-32 sp|Q2KHU5|MACD1_BOVIN ADP-ribose glycohydrolase MACROD1 OS=Bos ta... 134 2e-32 sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermopla... 126 3e-31 sp|P13889|POLN_RUBVT Non-structural polyprotein p200 OS=Rubella v... 127 2e-27 sp|Q9V0Y3|Y656_PYRAB Uncharacterized protein PYRAB06560 OS=Pyroco... 112 2e-26 sp|O59182|Y1513_PYRHO Uncharacterized protein PH1513 OS=Pyrococcu... 111 4e-26 sp|Q6X2U2|POLN_RUBVC Non-structural polyprotein p200 OS=Rubella v... 123 5e-26 sp|Q99IE5|POLN_RUBVV Non-structural polyprotein p200 OS=Rubella v... 122 7e-26 sp|Q99IE7|POLN_RUBVO Non-structural polyprotein p200 OS=Rubella v... 122 7e-26 sp|P26627|R1AB_CVMJD Replicase polyprotein 1ab (Fragment) OS=Muri... 119 7e-26 sp|Q6X2U4|POLN_RUBVB Non-structural polyprotein p200 OS=Rubella v... 122 9e-26 sp|O40955|POLN_RUBVR Non-structural polyprotein p200 OS=Rubella v... 119 5e-25 sp|Q9J6K9|POLN_RUBVD Non-structural polyprotein p200 OS=Rubella v... 117 2e-24 sp|O28751|Y1521_ARCFU ADP-ribose glycohydrolase AF_1521 OS=Archae... 104 2e-23 sp|Q86500|POLN_RUBVM Non-structural polyprotein p200 OS=Rubella v... 110 5e-22 sp|Q8U0P9|Y1536_PYRFU Uncharacterized protein PF1536 OS=Pyrococcu... 97.1 4e-21 sp|P0DC29|ADPRH_STRPQ Protein-ADP-ribose hydrolase OS=Streptococc... 98.3 1e-20 sp|P0DC28|ADPRH_STRP3 Protein-ADP-ribose hydrolase OS=Streptococc... 98.3 1e-20 sp|Q99ZI6|ADPRH_STRP1 Protein-ADP-ribose hydrolase OS=Streptococc... 98.3 1e-20 sp|Q5JER1|Y1890_THEKO Uncharacterized protein TK1890 OS=Thermococ... 95.6 1e-20 sp|P0DN70|ADPRH_STRPG Protein-ADP-ribose hydrolase OS=Streptococc... 97.5 2e-20 sp|Q8P0X2|ADPRH_STRP8 Protein-ADP-ribose hydrolase OS=Streptococc... 97.5 2e-20 sp|Q5XC09|ADPRH_STRP6 Protein-ADP-ribose hydrolase OS=Streptococc... 97.5 2e-20 sp|Q8NYB7|ADPRH_STAAW Protein-ADP-ribose hydrolase OS=Staphylococ... 96.7 5e-20 sp|Q6GCE6|ADPRH_STAAS Protein-ADP-ribose hydrolase OS=Staphylococ... 96.7 5e-20 sp|Q5HIW9|ADPRH_STAAC Protein-ADP-ribose hydrolase OS=Staphylococ... 96.7 5e-20 sp|Q4QXJ8|POLN_EEEVF Polyprotein P1234 OS=Eastern equine encephal... 103 6e-20 sp|Q6GJZ1|ADPRH_STAAR Protein-ADP-ribose hydrolase OS=Staphylococ... 95.2 2e-19 sp|P67344|ADPRH_STAAN Protein-ADP-ribose hydrolase OS=Staphylococ... 94.4 3e-19 sp|P67343|ADPRH_STAAM Protein-ADP-ribose hydrolase OS=Staphylococ... 94.4 3e-19 sp|Q93RG0|ADPRH_TREMD Protein-ADP-ribose hydrolase OS=Treponema m... 92.9 8e-19 sp|P27283|POLN_SINDO Polyprotein P1234 OS=Sindbis virus subtype O... 99.4 9e-19 sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog OS=Nematostella vecte... 96.7 1e-18 sp|O67112|Y987_AQUAE Uncharacterized protein aq_987 OS=Aquifex ae... 89.4 1e-18 sp|P03317|POLN_SINDV Polyprotein P1234 OS=Sindbis virus OX=11034 ... 98.7 1e-18 sp|P13896|POLN_WEEV Polyprotein P1234 OS=Western equine encephali... 98.3 2e-18 sp|Q306W6|POLN_EEEV1 Polyprotein P1234 OS=Eastern equine encephal... 97.1 4e-18 sp|Q7TZB9|Y1934_MYCBO Uncharacterized protein Mb1934c OS=Mycobact... 92.5 6e-18 sp|P9WK29|Y1899_MYCTU Uncharacterized protein Rv1899c OS=Mycobact... 92.5 6e-18 sp|Q86924|POLN_AURAV Polyprotein P1234 OS=Aura virus OX=44158 PE=... 96.3 7e-18 sp|P9WK28|Y1899_MYCTO Uncharacterized protein MT1950 OS=Mycobacte... 92.5 8e-18 sp|Q306W8|POLN_EEEV8 Polyprotein P1234 OS=Eastern equine encephal... 94.8 2e-17 sp|Q8JUX6|POLN_CHIKS Polyprotein P1234 OS=Chikungunya virus (stra... 92.9 7e-17 sp|Q5XXP4|POLN_CHIK3 Polyprotein P1234 OS=Chikungunya virus (stra... 92.5 1e-16 sp|O93327|H2AY_CHICK Core histone macro-H2A.1 OS=Gallus gallus OX... 87.9 3e-16 sp|Q02874|H2AY_RAT Core histone macro-H2A.1 OS=Rattus norvegicus ... 87.9 3e-16 sp|O75367|H2AY_HUMAN Core histone macro-H2A.1 OS=Homo sapiens OX=... 87.5 3e-16 sp|O90370|POLN_ONNVI Polyprotein P1234 OS=O'nyong-nyong virus (st... 90.2 4e-16 sp|Q9QZQ8|H2AY_MOUSE Core histone macro-H2A.1 OS=Mus musculus OX=... 86.7 6e-16 sp|Q2KIX2|GDAP2_BOVIN Ganglioside-induced differentiation-associa... 87.9 7e-16 sp|O90368|POLN_ONNVS Polyprotein P1234 OS=O'nyong-nyong virus (st... 89.0 1e-15 sp|P13886|POLN_ONNVG Polyprotein P1234 OS=O'nyong-nyong virus (st... 89.0 1e-15 sp|Q5XGM5|GDAP2_XENLA Ganglioside-induced differentiation-associa... 85.9 3e-15 sp|Q9YBE9|Y1648_AERPE Uncharacterized protein APE_1648.1 OS=Aerop... 80.2 4e-15 sp|Q5CZL1|GDAP2_XENTR Ganglioside-induced differentiation-associa... 85.6 4e-15 sp|Q8QZ73|POLN_MAYAB Polyprotein P1234 OS=Mayaro virus (strain Br... 87.1 4e-15 sp|Q9DBL2|GDAP2_MOUSE Ganglioside-induced differentiation-associa... 85.6 4e-15 sp|Q9NXN4|GDAP2_HUMAN Ganglioside-induced differentiation-associa... 85.6 4e-15 sp|P87515|POLN_BFV Polyprotein P1234 OS=Barmah forest virus OX=11... 86.7 5e-15 sp|P13887|POLN_RRVN Polyprotein P1234 OS=Ross river virus (strain... 86.3 8e-15 sp|P13888|POLN_RRVT Polyprotein nsP1234 (Fragment) OS=Ross river ... 85.2 1e-14 sp|Q66H63|GDAP2_RAT Ganglioside-induced differentiation-associate... 83.2 2e-14 sp|Q8QL53|POLN_SLDV Polyprotein P1234 OS=Sleeping disease virus O... 81.7 2e-13 sp|Q66HX8|GDAP2_DANRE Ganglioside-induced differentiation-associa... 80.2 2e-13 sp|Q8JJX1|POLN_SPDV Polyprotein P1234 OS=Salmon pancreas disease ... 81.3 2e-13 sp|Q5Y389|POLN_GETV Polyprotein P1234 OS=Getah virus OX=59300 PE=... 81.3 2e-13 sp|Q9JGL0|POLN_SAGV Polyprotein P1234 OS=Sagiyama virus OX=59303 ... 80.9 3e-13 sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian hep... 80.5 4e-13 sp|Q4R678|GDAP2_MACFA Ganglioside-induced differentiation-associa... 77.5 1e-12 sp|Q460N3|PAR15_HUMAN Protein mono-ADP-ribosyltransferase PARP15 ... 75.5 9e-12 sp|Q7JUR6|GDAP2_DROME Protein GDAP2 homolog OS=Drosophila melanog... 69.8 3e-10 sp|Q8CCK0|H2AW_MOUSE Core histone macro-H2A.2 OS=Mus musculus OX=... 67.8 7e-10 sp|Q9P0M6|H2AW_HUMAN Core histone macro-H2A.2 OS=Homo sapiens OX=... 67.8 8e-10 sp|Q292F9|GDAP2_DROPS Protein GDAP2 homolog OS=Drosophila pseudoo... 68.2 1e-09 sp|Q9YLR1|POLN_HEVUS Non-structural polyprotein pORF1 OS=Hepatiti... 68.6 2e-09 sp|A0A0D2UG83|H2AY_CAPO3 Histone macroH2A1.1 OS=Capsaspora owczar... 66.3 3e-09 sp|Q81862|POLN_HEVCH Non-structural polyprotein pORF1 OS=Hepatiti... 64.4 3e-08 sp|P33424|POLN_HEVPA Non-structural polyprotein pORF1 OS=Hepatiti... 64.0 4e-08 sp|P29324|POLN_HEVBU Non-structural polyprotein pORF1 OS=Hepatiti... 64.0 4e-08 sp|Q6J8G2|POLN_HEVMG Non-structural polyprotein pORF1 OS=Hepatiti... 62.4 1e-07 sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus... 62.1 2e-07 sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir... 62.1 2e-07 sp|Q9WC28|POLN_HEVHY Non-structural polyprotein pORF1 OS=Hepatiti... 61.7 2e-07 sp|Q03495|POLN_HEVME Non-structural polyprotein pORF1 OS=Hepatiti... 61.3 2e-07 sp|Q04610|POLN_HEVMY Non-structural polyprotein pORF1 OS=Hepatiti... 60.5 5e-07 sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis... 60.1 5e-07 sp|Q9IVZ9|POLN_HEVCT Non-structural polyprotein pORF1 OS=Hepatiti... 60.1 5e-07 sp|Q54PT1|GDAP2_DICDI Protein GDAP2 homolog OS=Dictyostelium disc... 55.5 1e-05 sp|P08411|POLN_SFV Polyprotein P1234 OS=Semliki forest virus OX=1... 54.0 4e-05 sp|Q5HTX9|PGLB_CAMJR Undecaprenyl-diphosphooligosaccharide--prote... 45.1 0.019 sp|Q0P9C8|PGLB_CAMJE Undecaprenyl-diphosphooligosaccharide--prote... 44.7 0.021 sp|A8GUJ3|ATP6_RICB8 ATP synthase subunit a OS=Rickettsia bellii ... 41.6 0.094 sp|B9KDD4|PGLB_CAMLR Undecaprenyl-diphosphooligosaccharide--prote... 42.8 0.098 sp|Q1RGZ3|ATP6_RICBR ATP synthase subunit a OS=Rickettsia bellii ... 41.6 0.10 sp|Q5A1V3|POA1_CANAL ADP-ribose 1''-phosphate phosphatase OS=Cand... 40.1 0.11 sp|Q4FRM3|RS20_PSYA2 Small ribosomal subunit protein bS20 OS=Psyc... 37.4 0.29 sp|B0ULY1|ATP6_METS4 ATP synthase subunit a OS=Methylobacterium s... 40.1 0.32 sp|Q03QN6|TIG_LEVBA Trigger factor OS=Levilactobacillus brevis (s... 40.1 0.50 sp|Q11KH9|ATP6_CHESB ATP synthase subunit a OS=Chelativorans sp. ... 39.3 0.53 sp|Q03F26|TIG_PEDPA Trigger factor OS=Pediococcus pentosaceus (st... 39.7 0.64 sp|Q2KBW1|ATP6_RHIEC ATP synthase subunit a OS=Rhizobium etli (st... 38.9 0.74 sp|Q3KNA1|MRGB2_MOUSE Mas-related G-protein coupled receptor memb... 39.3 0.82 sp|Q91ZC6|MRGA6_MOUSE Mas-related G-protein coupled receptor memb... 38.6 1.1 sp|Q2FQC0|KUP_METHJ Probable potassium transport system protein K... 38.9 1.3 sp|P15576|NU1M_LEITA NADH-ubiquinone oxidoreductase chain 1 OS=Le... 38.2 1.5 sp|A1SSX2|RNFD_PSYIN Ion-translocating oxidoreductase complex sub... 38.6 1.5 sp|P12428|BROWN_DROME Protein brown OS=Drosophila melanogaster OX... 38.6 1.7 sp|Q9V4C8|HCF_DROME Host cell factor OS=Drosophila melanogaster O... 38.6 1.8 sp|F1QGD2|ZDH24_DANRE Probable palmitoyltransferase ZDHHC24 OS=Da... 37.8 1.8 sp|B3PRF6|ATP6_RHIE6 ATP synthase subunit a OS=Rhizobium etli (st... 37.4 2.0 sp|B5ZS16|ATP6_RHILW ATP synthase subunit a OS=Rhizobium legumino... 37.4 2.2 sp|Q1QA59|RS20_PSYCK Small ribosomal subunit protein bS20 OS=Psyc... 35.1 2.2 sp|Q49429|P200_MYCGE Protein P200 OS=Mycoplasma genitalium (strai... 38.2 2.3 sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 OS=Tr... 37.8 2.6 sp|B9JA28|ATP6_RHIR8 ATP synthase subunit a OS=Rhizobium rhizogen... 37.0 2.7 sp|C4XXB1|AIM21_CLAL4 Altered inheritance of mitochondria protein... 37.8 3.1 sp|Q68XQ1|ATP6_RICTY ATP synthase subunit a OS=Rickettsia typhi (... 37.0 3.1 sp|A5E287|POA1_LODEL ADP-ribose 1''-phosphate phosphatase OS=Lodd... 35.9 3.2 sp|Q67ES1|TR113_RAT Taste receptor type 2 member 113 OS=Rattus no... 37.0 3.3 sp|Q6CRE9|FYV8_KLULA Protein FYV8 OS=Kluyveromyces lactis (strain... 37.8 3.4 sp|Q00167|VG78_ICHVA Putative zinc-binding protein ORF78 OS=Ictal... 37.4 3.6 sp|Q8IRB5|CLSPN_DROME Claspin OS=Drosophila melanogaster OX=7227 ... 37.4 3.9 sp|P46565|SRG8_CAEEL Serpentine receptor class gamma-8 OS=Caenorh... 37.0 4.1 sp|A8GLV8|ATP6_RICAH ATP synthase subunit a OS=Rickettsia akari (... 36.3 4.5 sp|Q9Z1Q1|NEST_MESAU Nestin (Fragments) OS=Mesocricetus auratus O... 37.0 5.2 sp|Q58990|Y1595_METJA UPF0104 membrane protein MJ1595 OS=Methanoc... 36.6 5.2 sp|O74871|YCW3_SCHPO Uncharacterized protein C31H12.03c OS=Schizo... 36.3 5.9 sp|A8F0C9|ATP6_RICM5 ATP synthase subunit a OS=Rickettsia massili... 35.9 6.0 sp|Q37376|NU2M_ACACA NADH-ubiquinone oxidoreductase chain 2 OS=Ac... 36.6 6.1 sp|B5RRC2|MRAY_BORRA Phospho-N-acetylmuramoyl-pentapeptide-transf... 36.3 6.2 sp|Q7Z699|SPRE1_HUMAN Sprouty-related, EVH1 domain-containing pro... 36.6 6.7 sp|Q9M6N7|AMT2_ARATH Ammonium transporter 2 OS=Arabidopsis thalia... 36.3 7.0 sp|C3PM51|ATP6_RICAE ATP synthase subunit a OS=Rickettsia africae... 35.9 7.1 sp|P34338|YK14_CAEEL Uncharacterized protein C15H7.4 OS=Caenorhab... 36.3 7.4 sp|Q04654|ATP6_VICFA ATP synthase subunit a OS=Vicia faba OX=3906... 35.9 7.6 sp|Q91ZC7|MRGA5_MOUSE Mas-related G-protein coupled receptor memb... 35.9 8.0 sp|Q4UNH7|ATP6_RICFE ATP synthase subunit a OS=Rickettsia felis (... 35.5 8.3 sp|Q4WFQ4|ABCH_ASPFU ABC multidrug transporter H OS=Aspergillus f... 36.6 8.4 sp|Q12019|MDN1_YEAST Midasin OS=Saccharomyces cerevisiae (strain ... 36.6 8.7 sp|Q8JZW4|CPNE5_MOUSE Copine-5 OS=Mus musculus OX=10090 GN=Cpne5 ... 36.3 8.9 sp|Q92JP0|ATP6_RICCN ATP synthase subunit a OS=Rickettsia conorii... 35.5 9.2 sp|C4K0P3|ATP6_RICPU ATP synthase subunit a OS=Rickettsia peacock... 35.5 9.3 sp|Q9HCH3|CPNE5_HUMAN Copine-5 OS=Homo sapiens OX=9606 GN=CPNE5 P... 36.3 9.3 sp|Q6XL69|OPN4_RUTRU Melanopsin OS=Rutilus rutilus OX=48668 GN=op... 35.9 9.8 sp|D0E0C2|SCNA1_PERAM Sodium channel protein PaFPC1 OS=Periplanet... 36.3 9.9 >sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1 Length=4405 Score = 6156 bits (15971), Expect = 0.0, Method: Composition-based stats. Identities = 4405/4405 (100%), Positives = 4405/4405 (100%), Gaps = 0/4405 (0%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV Sbjct 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK Sbjct 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG Sbjct 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW Sbjct 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI Sbjct 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL Sbjct 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC Sbjct 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF Sbjct 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA Sbjct 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY Sbjct 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV Sbjct 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC Sbjct 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG Sbjct 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN 840 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN Sbjct 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN 840 Query 841 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW 900 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW Sbjct 841 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW 900 Query 901 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL 960 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL Sbjct 901 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL 960 Query 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV 1020 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV Sbjct 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV 1020 Query 1021 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN Sbjct 1021 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 Query 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ 1140 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ Sbjct 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ 1140 Query 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE 1200 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE Sbjct 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE 1200 Query 1201 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN 1260 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN Sbjct 1201 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN 1260 Query 1261 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV 1320 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV Sbjct 1261 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV 1320 Query 1321 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA 1380 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA Sbjct 1321 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA 1380 Query 1381 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND 1440 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND Sbjct 1381 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND 1440 Query 1441 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH 1500 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH Sbjct 1441 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH 1500 Query 1501 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL 1560 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL Sbjct 1501 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL 1560 Query 1561 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV Sbjct 1561 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 Query 1621 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL Sbjct 1621 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 Query 1681 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN 1740 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN Sbjct 1681 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN 1740 Query 1741 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ 1800 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ Sbjct 1741 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ 1800 Query 1801 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK 1860 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK Sbjct 1801 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK 1860 Query 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY Sbjct 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 Query 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK Sbjct 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 Query 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA Sbjct 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 Query 2041 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV Sbjct 2041 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 Query 2101 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC 2160 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC Sbjct 2101 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC 2160 Query 2161 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS Sbjct 2161 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 Query 2221 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT 2280 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT Sbjct 2221 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT 2280 Query 2281 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV 2340 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV Sbjct 2281 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV 2340 Query 2341 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV Sbjct 2341 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 Query 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA Sbjct 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 Query 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH Sbjct 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 Query 2521 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV Sbjct 2521 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 Query 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG 2640 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG Sbjct 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG 2640 Query 2641 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN 2700 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN Sbjct 2641 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN 2700 Query 2701 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL 2760 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL Sbjct 2701 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL 2760 Query 2761 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI 2820 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI Sbjct 2761 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI 2820 Query 2821 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD 2880 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD Sbjct 2821 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD 2880 Query 2881 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE 2940 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE Sbjct 2881 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE 2940 Query 2941 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST 3000 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST Sbjct 2941 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST 3000 Query 3001 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL 3060 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL Sbjct 3001 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL 3060 Query 3061 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV 3120 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV Sbjct 3061 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV 3120 Query 3121 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL 3180 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL Sbjct 3121 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL 3180 Query 3181 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND 3240 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND Sbjct 3181 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND 3240 Query 3241 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY 3300 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY Sbjct 3241 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY 3300 Query 3301 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK 3360 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK Sbjct 3301 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK 3360 Query 3361 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV 3420 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV Sbjct 3361 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV 3420 Query 3421 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR 3480 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR Sbjct 3421 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR 3480 Query 3481 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN 3540 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN Sbjct 3481 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN 3540 Query 3541 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW 3600 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW Sbjct 3541 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW 3600 Query 3601 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV 3660 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV Sbjct 3601 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV 3660 Query 3661 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK 3720 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK Sbjct 3661 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK 3720 Query 3721 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM 3780 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM Sbjct 3721 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM 3780 Query 3781 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL 3840 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL Sbjct 3781 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL 3840 Query 3841 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL 3900 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL Sbjct 3841 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL 3900 Query 3901 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA 3960 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA Sbjct 3901 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA 3960 Query 3961 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED 4020 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED Sbjct 3961 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED 4020 Query 4021 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY 4080 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY Sbjct 4021 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY 4080 Query 4081 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ 4140 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ Sbjct 4081 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ 4140 Query 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD Sbjct 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200 Query 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV 4260 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV Sbjct 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV 4260 Query 4261 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES 4320 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES Sbjct 4261 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES 4320 Query 4321 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG 4380 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG Sbjct 4321 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG 4380 Query 4381 CSCDQLREPMLQSADAQSFLNGFAV 4405 CSCDQLREPMLQSADAQSFLNGFAV Sbjct 4381 CSCDQLREPMLQSADAQSFLNGFAV 4405 >sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 6152 bits (15959), Expect = 0.0, Method: Composition-based stats. Identities = 4401/4401 (100%), Positives = 4401/4401 (100%), Gaps = 0/4401 (0%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV Sbjct 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK Sbjct 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG Sbjct 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW Sbjct 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI Sbjct 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL Sbjct 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC Sbjct 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF Sbjct 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA Sbjct 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY Sbjct 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV Sbjct 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC Sbjct 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG Sbjct 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN 840 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN Sbjct 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVN 840 Query 841 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW 900 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW Sbjct 841 ITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEW 900 Query 901 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL 960 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL Sbjct 901 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL 960 Query 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV 1020 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV Sbjct 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV 1020 Query 1021 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN Sbjct 1021 QTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 Query 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ 1140 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ Sbjct 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ 1140 Query 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE 1200 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE Sbjct 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVE 1200 Query 1201 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN 1260 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN Sbjct 1201 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDIN 1260 Query 1261 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV 1320 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV Sbjct 1261 GNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKV 1320 Query 1321 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA 1380 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA Sbjct 1321 PTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLA 1380 Query 1381 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND 1440 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND Sbjct 1381 HAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTLND 1440 Query 1441 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH 1500 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH Sbjct 1441 LNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPEEH 1500 Query 1501 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL 1560 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL Sbjct 1501 FIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLDGEVITFDNLKTLL 1560 Query 1561 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV Sbjct 1561 SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYV 1620 Query 1621 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL Sbjct 1621 LPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATAL 1680 Query 1681 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN 1740 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN Sbjct 1681 LTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHAN 1740 Query 1741 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ 1800 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ Sbjct 1741 LDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQ 1800 Query 1801 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK 1860 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK Sbjct 1801 ESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK 1860 Query 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY Sbjct 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 Query 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK Sbjct 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 Query 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA Sbjct 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 Query 2041 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV Sbjct 2041 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYV 2100 Query 2101 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC 2160 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC Sbjct 2101 DNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRC 2160 Query 2161 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS Sbjct 2161 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 Query 2221 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT 2280 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT Sbjct 2221 PNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIAT 2280 Query 2281 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV 2340 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV Sbjct 2281 YCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYV 2340 Query 2341 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV Sbjct 2341 LGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHV 2400 Query 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA Sbjct 2401 VDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCA 2460 Query 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH Sbjct 2461 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSH 2520 Query 2521 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV Sbjct 2521 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 Query 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG 2640 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG Sbjct 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG 2640 Query 2641 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN 2700 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN Sbjct 2641 FVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHIN 2700 Query 2701 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL 2760 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL Sbjct 2701 AQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL 2760 Query 2761 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI 2820 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI Sbjct 2761 KGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDI 2820 Query 2821 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD 2880 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD Sbjct 2821 ASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGD 2880 Query 2881 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE 2940 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE Sbjct 2881 FLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLE 2940 Query 2941 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST 3000 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST Sbjct 2941 GSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVST 3000 Query 3001 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL 3060 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL Sbjct 3001 SGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL 3060 Query 3061 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV 3120 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV Sbjct 3061 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV 3120 Query 3121 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL 3180 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL Sbjct 3121 SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAAL 3180 Query 3181 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND 3240 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND Sbjct 3181 CTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALND 3240 Query 3241 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY 3300 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY Sbjct 3241 FSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVY 3300 Query 3301 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK 3360 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK Sbjct 3301 CPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPK 3360 Query 3361 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV 3420 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV Sbjct 3361 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCV 3420 Query 3421 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR 3480 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR Sbjct 3421 SFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDR 3480 Query 3481 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN 3540 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN Sbjct 3481 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMN 3540 Query 3541 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW 3600 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW Sbjct 3541 GRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQW 3600 Query 3601 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV 3660 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV Sbjct 3601 SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWV 3660 Query 3661 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK 3720 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK Sbjct 3661 MRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYK 3720 Query 3721 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM 3780 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM Sbjct 3721 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM 3780 Query 3781 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL 3840 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL Sbjct 3781 LVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKL 3840 Query 3841 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL 3900 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL Sbjct 3841 NIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILL 3900 Query 3901 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA 3960 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA Sbjct 3901 AKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATA 3960 Query 3961 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED 4020 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED Sbjct 3961 QEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSED 4020 Query 4021 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY 4080 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY Sbjct 4021 KRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTY 4080 Query 4081 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ 4140 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ Sbjct 4081 KNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ 4140 Query 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD Sbjct 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200 Query 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV 4260 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV Sbjct 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV 4260 Query 4261 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES 4320 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES Sbjct 4261 PANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES 4320 Query 4321 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG 4380 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG Sbjct 4321 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYG 4380 Query 4381 CSCDQLREPMLQSADAQSFLN 4401 CSCDQLREPMLQSADAQSFLN Sbjct 4381 CSCDQLREPMLQSADAQSFLN 4401 >sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=1a PE=1 SV=1 Length=4382 Score = 6110 bits (15850), Expect = 0.0, Method: Composition-based stats. Identities = 3538/4408 (80%), Positives = 3935/4408 (89%), Gaps = 29/4408 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA + HGH +VELVAE++GIQYGRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYG DLKS+DLGDELGTDP ED+++NWNTKH SG REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A TRYVDNNFCGPDGYPL+CIKD LARAGK+ CTLSEQLD+I++KRGVYCCR+HEHEIAW Sbjct 181 AVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVASP ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + E+GPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+Q+S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIF+RTL+ A +S+ LQ+AA+TILDGIS+ SLRL+DAM++TSDL TN++++MAY Sbjct 541 AGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ TSQWL+N+ GT EKL+P+ +W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVC+NGLMLLEIKD E+YCAL+P ++ TNN F LKGGAP K VTFG+DTV EVQGYK+V Sbjct 781 TPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQ-YEYGTEDDYQGK 958 WS+AT+YLFD++GE +S MYCSFYPPDE+EE+ EEE T +EYGTEDDYQG Sbjct 901 WSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGL 960 Query 959 PLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 1018 PLEFGA++ ++ EEE+EEDWLDD ++Q+ Sbjct 961 PLEFGASAETVRVEEEEEEDWLDDTTEQSE------------------------IEPEPE 996 Query 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 VN F+GYLKLTDNV IK DIV+EA+ P V+VNAAN++LKHGGGVAGALNKA Sbjct 997 PTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKA 1056 Query 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 1138 TN AMQ ESDDYI NGPL VGGSC+LSGHNLAK CLHVVGPN+N GEDIQLLK+AYENF Sbjct 1057 TNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENF 1116 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 N ++LLAPLLSAGIFGA P+ SL+VCV TVRT VY+AV DK LY+++V +L+ + Sbjct 1117 NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRV 1176 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYID 1258 K E P + TE K V++ KIKAC++EVTTTLEETKFLT LLL+ D Sbjct 1177 EAPKQEEPPN--TEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFAD 1234 Query 1259 INGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALR 1318 ING L+ DS ++ D++FL+KDAPY+VGDV+ G +T VVIP+KKAGGTTEML++AL+ Sbjct 1235 INGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALK 1294 Query 1319 KVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM 1378 KVP D YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS N K+EILGTVSWNLREM Sbjct 1295 KVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREM 1354 Query 1379 LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTL 1438 LAHAEETRKLMP+C++ +AI++TIQRKYKGIKIQEG+VDYG RF+FYTSK VAS+I L Sbjct 1355 LAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKL 1414 Query 1439 NDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPE 1498 N LNE LVTMP+GYVTHG NLEEAAR MRSLK PA VSVSSPDAVT YNGYLTSSSKT E Sbjct 1415 NSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSE 1474 Query 1499 EHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEVITFDNLK 1557 EHF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY+T +P FHLDGEV++ D LK Sbjct 1475 EHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLK 1534 Query 1558 TLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKT 1617 +LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQFGPTYLDGADVTKIKPH +HEGKT Sbjct 1535 SLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKT 1594 Query 1618 FYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLA 1677 F+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNNCYL+ Sbjct 1595 FFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLS 1654 Query 1678 TALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQ 1737 + LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM++L Q Sbjct 1655 SVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQ 1714 Query 1738 HANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYL 1797 HANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTLSY+ K GV IPC CG+ AT+YL Sbjct 1715 HANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYL 1774 Query 1798 VQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSS 1857 VQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCGHY HIT+KETLY IDGA LTK S Sbjct 1775 VQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMS 1834 Query 1858 EYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPN 1917 EYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+PKLD YYKKDN+Y+TEQPIDLVP Sbjct 1835 EYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPT 1894 Query 1918 QPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTP 1977 QP PNASFDNFK C N KFADDLNQ+TG+ KPASREL VTFFPDLNGDVVAIDY+HY+ Sbjct 1895 QPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSA 1954 Query 1978 SFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMD 2037 SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLWSTKPV+TSNSF+VL ED QGMD Sbjct 1955 SFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMD 2014 Query 2038 NLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 2097 NLACE +P SEEVVENPTIQK+V+EC+VKTTEVVG++ILKP++ +K+T+E+GH DLMA Sbjct 2015 NLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMA 2074 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIV 2157 AYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVPW I Y KPFL + TT+N Sbjct 2075 AYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCA 2134 Query 2158 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 2217 R RV NYMPY FTLL QLCTFT+STNSRI+AS+PTTIAKN+VKSV K CL+A NY Sbjct 2135 KRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINY 2194 Query 2218 LKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVT 2277 +KSP FSKL I +W LLLS+CLGSLI TAA GVL+SN G PSYC G RE YLNS+NVT Sbjct 2195 VKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVT 2254 Query 2278 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 2337 +C GS PCS+CLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEW LAY+LFT+F Sbjct 2255 TMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKF 2314 Query 2338 FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 2397 FY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYY+WKSY Sbjct 2315 FYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSY 2374 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 VH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HNWNC+NCDT Sbjct 2375 VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDT 2434 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 2517 FC GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV VKNG++HLYFDKAGQKTYERH Sbjct 2435 FCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHP 2494 Query 2518 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV 2577 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES++KSASVYYSQLMCQPILLLDQALV Sbjct 2495 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALV 2554 Query 2578 SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAA 2637 SDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF+SAA Sbjct 2555 SDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAA 2614 Query 2638 RQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 2697 RQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLGACIDC+AR Sbjct 2615 RQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNAR 2674 Query 2698 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 2757 HINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV+TTK Sbjct 2675 HINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTK 2734 Query 2758 IALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVT 2817 I+LKGGKIV+ K ++K TL+ + A + Y++ PVH +S H +++EIIGYKAI GVT Sbjct 2735 ISLKGGKIVSTCFKLMLKATLLCVLAALVCYIVMPVHTLSIHDGYTNEIIGYKAIQDGVT 2794 Query 2818 RDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTT 2877 RDI STD CFANKHA FD WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGLPGT+LR Sbjct 2795 RDIISTDDCFANKHAGFDAWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTVLRAI 2854 Query 2878 NGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTN 2937 NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPVPYCYDTN Sbjct 2855 NGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTN 2914 Query 2938 VLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVC 2997 +LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCERSE G+C Sbjct 2915 LLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGIC 2974 Query 2998 VSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVV 3057 +STSGRWVLNN++YR+L GVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+AI+V Sbjct 2975 LSTSGRWVLNNEHYRALSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILV 3034 Query 3058 TCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLT 3117 TC AYYFM+FRR FGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYSV YLYLTFY T Sbjct 3035 TCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFT 3094 Query 3118 NDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEE 3177 NDVSFLAH+QW MF+P+VPFWIT Y+ CIS KH +WFF+NYL++RV+FNGV+FSTFEE Sbjct 3095 NDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEE 3154 Query 3178 AALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKA 3237 AALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCHLAKA Sbjct 3155 AALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKA 3214 Query 3238 LNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD 3297 LNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD Sbjct 3215 LNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD 3274 Query 3298 VVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTA 3357 VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LKVDT+ Sbjct 3275 TVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTS 3334 Query 3358 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDY 3417 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGFNIDY Sbjct 3335 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDY 3394 Query 3418 DCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVIN 3477 DCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAAVIN Sbjct 3395 DCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVIN 3454 Query 3478 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQN 3537 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKELLQN Sbjct 3455 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQN 3514 Query 3538 GMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQS 3597 GMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTSLL+LVQS Sbjct 3515 GMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQS 3574 Query 3598 TQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3657 TQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMVYMPA Sbjct 3575 TQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3634 Query 3658 SWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL 3717 SWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLLILMTARTVYDD ARRVWTLMNV+TL Sbjct 3635 SWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITL 3694 Query 3718 VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQ 3777 VYKVYYGNALDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITGNTLQ Sbjct 3695 VYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQ 3754 Query 3778 CIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDA 3837 CIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+SIDA Sbjct 3755 CIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDA 3814 Query 3838 FKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3897 FKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND Sbjct 3815 FKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3874 Query 3898 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAF 3957 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDIN+LCEEMLDNRATLQAIASEFSSLPSYAA+ Sbjct 3875 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQAIASEFSSLPSYAAY 3934 Query 3958 ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQAR 4017 ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQAR Sbjct 3935 ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQAR 3994 Query 4018 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDY 4077 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV+PDY Sbjct 3995 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDY 4054 Query 4078 NTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAV 4137 TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNSPNLAWPLIVTALRANSAV Sbjct 4055 GTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAV 4114 Query 4138 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFP 4197 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFP Sbjct 4115 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFP 4174 Query 4198 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA 4257 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA Sbjct 4175 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA 4234 Query 4258 TEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD 4317 TEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD Sbjct 4235 TEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD 4294 Query 4318 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWK 4377 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVCGMWK Sbjct 4295 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWK 4354 Query 4378 GYGCSCDQLREPMLQSADAQSFLNGFAV 4405 GYGCSCDQLREP++QSADA +FLNGFAV Sbjct 4355 GYGCSCDQLREPLMQSADASTFLNGFAV 4382 >sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 6100 bits (15824), Expect = 0.0, Method: Composition-based stats. Identities = 3534/4404 (80%), Positives = 3931/4404 (89%), Gaps = 29/4404 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA + HGH +VELVAE++GIQYGRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYG DLKS+DLGDELGTDP ED+++NWNTKH SG REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A TRYVDNNFCGPDGYPL+CIKD LARAGK+ CTLSEQLD+I++KRGVYCCR+HEHEIAW Sbjct 181 AVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVASP ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + E+GPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+Q+S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIF+RTL+ A +S+ LQ+AA+TILDGIS+ SLRL+DAM++TSDL TN++++MAY Sbjct 541 AGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ TSQWL+N+ GT EKL+P+ +W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVC+NGLMLLEIKD E+YCAL+P ++ TNN F LKGGAP K VTFG+DTV EVQGYK+V Sbjct 781 TPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQ-YEYGTEDDYQGK 958 WS+AT+YLFD++GE +S MYCSFYPPDE+EE+ EEE T +EYGTEDDYQG Sbjct 901 WSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGL 960 Query 959 PLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 1018 PLEFGA++ ++ EEE+EEDWLDD ++Q+ Sbjct 961 PLEFGASAETVRVEEEEEEDWLDDTTEQSE------------------------IEPEPE 996 Query 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 VN F+GYLKLTDNV IK DIV+EA+ P V+VNAAN++LKHGGGVAGALNKA Sbjct 997 PTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKA 1056 Query 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 1138 TN AMQ ESDDYI NGPL VGGSC+LSGHNLAK CLHVVGPN+N GEDIQLLK+AYENF Sbjct 1057 TNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENF 1116 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 N ++LLAPLLSAGIFGA P+ SL+VCV TVRT VY+AV DK LY+++V +L+ + Sbjct 1117 NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRV 1176 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYID 1258 K E P + TE K V++ KIKAC++EVTTTLEETKFLT LLL+ D Sbjct 1177 EAPKQEEPPN--TEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFAD 1234 Query 1259 INGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALR 1318 ING L+ DS ++ D++FL+KDAPY+VGDV+ G +T VVIP+KKAGGTTEML++AL+ Sbjct 1235 INGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALK 1294 Query 1319 KVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM 1378 KVP D YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS N K+EILGTVSWNLREM Sbjct 1295 KVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREM 1354 Query 1379 LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTL 1438 LAHAEETRKLMP+C++ +AI++TIQRKYKGIKIQEG+VDYG RF+FYTSK VAS+I L Sbjct 1355 LAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKL 1414 Query 1439 NDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPE 1498 N LNE LVTMP+GYVTHG NLEEAAR MRSLK PA VSVSSPDAVT YNGYLTSSSKT E Sbjct 1415 NSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSE 1474 Query 1499 EHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEVITFDNLK 1557 EHF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY+T +P FHLDGEV++ D LK Sbjct 1475 EHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLK 1534 Query 1558 TLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKT 1617 +LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQFGPTYLDGADVTKIKPH +HEGKT Sbjct 1535 SLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKT 1594 Query 1618 FYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLA 1677 F+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNNCYL+ Sbjct 1595 FFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLS 1654 Query 1678 TALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQ 1737 + LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM++L Q Sbjct 1655 SVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQ 1714 Query 1738 HANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYL 1797 HANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTLSY+ K GV IPC CG+ AT+YL Sbjct 1715 HANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYL 1774 Query 1798 VQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSS 1857 VQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCGHY HIT+KETLY IDGA LTK S Sbjct 1775 VQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMS 1834 Query 1858 EYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPN 1917 EYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+PKLD YYKKDN+Y+TEQPIDLVP Sbjct 1835 EYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPT 1894 Query 1918 QPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTP 1977 QP PNASFDNFK C N KFADDLNQ+TG+ KPASREL VTFFPDLNGDVVAIDY+HY+ Sbjct 1895 QPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSA 1954 Query 1978 SFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMD 2037 SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLWSTKPV+TSNSF+VL ED QGMD Sbjct 1955 SFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMD 2014 Query 2038 NLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 2097 NLACE +P SEEVVENPTIQK+V+EC+VKTTEVVG++ILKP++ +K+T+E+GH DLMA Sbjct 2015 NLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMA 2074 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIV 2157 AYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVPW I Y KPFL + TT+N Sbjct 2075 AYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCA 2134 Query 2158 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 2217 R RV NYMPY FTLL QLCTFT+STNSRI+AS+PTTIAKN+VKSV K CL+A NY Sbjct 2135 KRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINY 2194 Query 2218 LKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVT 2277 +KSP FSKL I +W LLLS+CLGSLI TAA GVL+SN G PSYC G RE YLNS+NVT Sbjct 2195 VKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVT 2254 Query 2278 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 2337 +C GS PCS+CLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEW LAY+LFT+F Sbjct 2255 TMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKF 2314 Query 2338 FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 2397 FY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYY+WKSY Sbjct 2315 FYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSY 2374 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 VH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HNWNC+NCDT Sbjct 2375 VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDT 2434 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 2517 FC GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV VKNG++HLYFDKAGQKTYERH Sbjct 2435 FCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHP 2494 Query 2518 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV 2577 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES++KSASVYYSQLMCQPILLLDQALV Sbjct 2495 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALV 2554 Query 2578 SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAA 2637 SDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF+SAA Sbjct 2555 SDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAA 2614 Query 2638 RQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 2697 RQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLGACIDC+AR Sbjct 2615 RQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNAR 2674 Query 2698 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 2757 HINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV+TTK Sbjct 2675 HINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTK 2734 Query 2758 IALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVT 2817 I+LKGGKIV+ K ++K TL+ + A + Y++ PVH +S H +++EIIGYKAI GVT Sbjct 2735 ISLKGGKIVSTCFKLMLKATLLCVLAALVCYIVMPVHTLSIHDGYTNEIIGYKAIQDGVT 2794 Query 2818 RDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTT 2877 RDI STD CFANKHA FD WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGLPGT+LR Sbjct 2795 RDIISTDDCFANKHAGFDAWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTVLRAI 2854 Query 2878 NGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTN 2937 NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPVPYCYDTN Sbjct 2855 NGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTN 2914 Query 2938 VLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVC 2997 +LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCERSE G+C Sbjct 2915 LLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGIC 2974 Query 2998 VSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVV 3057 +STSGRWVLNN++YR+L GVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+AI+V Sbjct 2975 LSTSGRWVLNNEHYRALSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILV 3034 Query 3058 TCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLT 3117 TC AYYFM+FRR FGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYSV YLYLTFY T Sbjct 3035 TCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFT 3094 Query 3118 NDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEE 3177 NDVSFLAH+QW MF+P+VPFWIT Y+ CIS KH +WFF+NYL++RV+FNGV+FSTFEE Sbjct 3095 NDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEE 3154 Query 3178 AALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKA 3237 AALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCHLAKA Sbjct 3155 AALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKA 3214 Query 3238 LNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD 3297 LNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD Sbjct 3215 LNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD 3274 Query 3298 VVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTA 3357 VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LKVDT+ Sbjct 3275 TVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTS 3334 Query 3358 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDY 3417 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGFNIDY Sbjct 3335 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDY 3394 Query 3418 DCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVIN 3477 DCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAAVIN Sbjct 3395 DCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVIN 3454 Query 3478 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQN 3537 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKELLQN Sbjct 3455 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQN 3514 Query 3538 GMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQS 3597 GMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTSLL+LVQS Sbjct 3515 GMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQS 3574 Query 3598 TQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3657 TQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMVYMPA Sbjct 3575 TQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3634 Query 3658 SWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL 3717 SWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLLILMTARTVYDD ARRVWTLMNV+TL Sbjct 3635 SWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITL 3694 Query 3718 VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQ 3777 VYKVYYGNALDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITGNTLQ Sbjct 3695 VYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQ 3754 Query 3778 CIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDA 3837 CIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+SIDA Sbjct 3755 CIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDA 3814 Query 3838 FKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3897 FKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND Sbjct 3815 FKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3874 Query 3898 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAF 3957 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDIN+LCEEMLDNRATLQAIASEFSSLPSYAA+ Sbjct 3875 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQAIASEFSSLPSYAAY 3934 Query 3958 ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQAR 4017 ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQAR Sbjct 3935 ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQAR 3994 Query 4018 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDY 4077 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV+PDY Sbjct 3995 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDY 4054 Query 4078 NTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAV 4137 TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNSPNLAWPLIVTALRANSAV Sbjct 4055 GTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAV 4114 Query 4138 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFP 4197 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFP Sbjct 4115 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFP 4174 Query 4198 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA 4257 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA Sbjct 4175 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA 4234 Query 4258 TEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD 4317 TEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD Sbjct 4235 TEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD 4294 Query 4318 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWK 4377 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVCGMWK Sbjct 4295 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWK 4354 Query 4378 GYGCSCDQLREPMLQSADAQSFLN 4401 GYGCSCDQLREP++QSADA +FLN Sbjct 4355 GYGCSCDQLREPLMQSADASTFLN 4378 >sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus HKU3 OX=442736 GN=1a PE=3 SV=1 Length=4376 Score = 6084 bits (15783), Expect = 0.0, Method: Composition-based stats. Identities = 3536/4408 (80%), Positives = 3924/4408 (89%), Gaps = 35/4408 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA + HGH +VELVAEL+GIQ+GRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SG REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 TRYVDNNFCGPDGYPLECIKD LARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVFSYVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIG NHTG+ GE E LN++LLEIL +E+VNINIVGDF+ NEE+AIILASF Sbjct 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SAS SAF+ETVKGLDYK+FK IVESCGN+KVT GK GAWNIG+Q+SIL+PL F S+A Sbjct 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIFSRTL+ A +S+ LQ+AA+T LDGIS+ SLRL+DAM++TSDL TN++VVMAY Sbjct 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ T QWL+N+ GT +KLKPV W+E K GVEFLRD WEI+KF+ T +++ Sbjct 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI IKE V+ F +VNK L +C D + I G KL+ALNLGE F+ S+GLYR+C Sbjct 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG+ T + +EEVVLK+G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVCINGLMLLE+++ E+YCAL+P ++ TNN F LKGGAP K VTFG+DTV+EVQGYK+V Sbjct 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLTP+GIDLDE Sbjct 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKP 959 WS+AT+YLFD++GE KL+S MYCSFYPPD EEE E E+ E + ++EYGTEDDY+G P Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPD--EEEDCEECEDEEETCEHEYGTEDDYKGLP 958 Query 960 LEFGATSAALQPEEEQEE-DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 1018 LEFGA++ EEE+EE DWLDD + Sbjct 959 LEFGASTETPHVEEEEEEEDWLDDAIEAEP---------------------------EPE 991 Query 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 + VN F GYLKLTDNV IK DIV+EA+ KPTV+VNAAN +LKHGGGVAGALNKA Sbjct 992 PLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKA 1051 Query 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 1138 TN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLHVVGPN+N GED+QLLK AYENF Sbjct 1052 TNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENF 1111 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 N +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLAV DK+LYD++V +L+ K Sbjct 1112 NSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKV 1171 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYID 1258 E PK E + +P E+ KIKAC++EVTTTLEETKFLT LLL+ D Sbjct 1172 ESPNKEEEPKLEEPKAV---QPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFAD 1228 Query 1259 INGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALR 1318 ING L+ DS ++ D++FL+KDAPYIVGDV+ G +T V+IP KK+GGTTEMLA+AL+ Sbjct 1229 INGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALK 1288 Query 1319 KVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM 1378 +VP YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS NEK+E+LGTVSWNLREM Sbjct 1289 EVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREM 1348 Query 1379 LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTL 1438 LAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QEG+VDYG RF+FYTSK VAS+I L Sbjct 1349 LAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKL 1408 Query 1439 NDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPE 1498 N LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VSVSSPDAVTAYNGYLTSSSKTPE Sbjct 1409 NSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPE 1468 Query 1499 EHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEVITFDNLK 1557 E+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY+T +P FHLDGEV+ D LK Sbjct 1469 EYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLK 1528 Query 1558 TLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKT 1617 +LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQQFGPTYLDGADVTKIKPH +HEGKT Sbjct 1529 SLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKT 1588 Query 1618 FYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLA 1677 F+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNNCYL+ Sbjct 1589 FFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLS 1648 Query 1678 TALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQ 1737 + LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM++L Q Sbjct 1649 SVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQ 1708 Query 1738 HANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYL 1797 HANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMGTLSY++ K GV IPC CG+ AT+YL Sbjct 1709 HANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYL 1768 Query 1798 VQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSS 1857 VQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQCGHY HIT+KETLY +DGA LTK S Sbjct 1769 VQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMS 1828 Query 1858 EYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPN 1917 EYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI+PKLD YYKK N+Y+TEQPIDLVP Sbjct 1829 EYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPT 1888 Query 1918 QPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTP 1977 QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL VTFFPDLNGDVVAIDY+HY+ Sbjct 1889 QPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYST 1948 Query 1978 SFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMD 2037 SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RCLWSTKPV+TSNSF+VL ED QGMD Sbjct 1949 SFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMD 2008 Query 2038 NLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 2097 NLACE SEEVVENPT+QK+++EC+VKTTEVVG++ILKP+ +K+T+E+GH DLMA Sbjct 2009 NLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIV 2157 AYV+ +S+TIKKPNELS LGLKTLATHG AA+NSVPW I Y KPFL + T+N + Sbjct 2069 AYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCI 2128 Query 2158 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 2217 +C+ RV +NYMPY TLL QLCTFT+STNSRIKAS+PTTIAKN+VKSV K CL+ NY Sbjct 2129 KKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINY 2188 Query 2218 LKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVT 2277 +KSP FSKL I++W LLLS+CLGSL Y TA LGV +S+LG+PSYC G RE Y+NS+NVT Sbjct 2189 VKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVT 2248 Query 2278 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 2337 +C G PCSVCLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEW LAY+LFT+F Sbjct 2249 TMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKF 2308 Query 2338 FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 2397 FY+LGL+AIMQ FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYYVWKSY Sbjct 2309 FYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSY 2368 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 VH++DGC SSTCMMCYKRNRATRVECTTIVNGV+RSFYVYANGG+GFCK HNWNC+NCDT Sbjct 2369 VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDT 2428 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 2517 FCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSVTVKNG++HLYFDKAGQKTYERH Sbjct 2429 FCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHP 2488 Query 2518 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV 2577 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES+AKSASVYYSQLMCQPILLLDQALV Sbjct 2489 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALV 2548 Query 2578 SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAA 2637 SDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF+SAA Sbjct 2549 SDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAA 2608 Query 2638 RQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 2697 RQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN+MLTYNKVENMTPRDLGACIDC+AR Sbjct 2609 RQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNAR 2668 Query 2698 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 2757 HINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV+TTK Sbjct 2669 HINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTK 2728 Query 2758 IALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVT 2817 I+LKGGK+V+ W K L+KVTL+ + A Y+I PVH +S H +++EIIGYKAI GVT Sbjct 2729 ISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVT 2788 Query 2818 RDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTT 2877 RDI STD CFANKHA FD+WFSQRGGSY NDK CP++AA+ITRE+GF+VPGLPGT+LR Sbjct 2789 RDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRAL 2848 Query 2878 NGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTN 2937 NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPVPYCYDTN Sbjct 2849 NGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTN 2908 Query 2938 VLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVC 2997 +LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCERSE GVC Sbjct 2909 LLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVC 2968 Query 2998 VSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVV 3057 +STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+AI+V Sbjct 2969 LSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILV 3028 Query 3058 TCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLT 3117 TC AYYFM+FRRAFGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYS+ YLYLTFY T Sbjct 3029 TCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFT 3088 Query 3118 NDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEE 3177 NDVSFLAH+QW MF+P+VPFWIT Y+ CIS KHF+WFFSNYLK+RV+FNGV+FSTFEE Sbjct 3089 NDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEE 3148 Query 3178 AALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKA 3237 AALCTFLLNKEMYL+LRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCHLAKA Sbjct 3149 AALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKA 3208 Query 3238 LNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD 3297 LNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD Sbjct 3209 LNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD 3268 Query 3298 VVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTA 3357 VYCPRHV+CT+EDMLNPNY+DLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LKVDT+ Sbjct 3269 TVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTS 3328 Query 3358 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDY 3417 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGFNIDY Sbjct 3329 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDY 3388 Query 3418 DCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVIN 3477 DCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAAVIN Sbjct 3389 DCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVIN 3448 Query 3478 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQN 3537 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKELLQN Sbjct 3449 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQN 3508 Query 3538 GMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQS 3597 GMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTSLL+LVQS Sbjct 3509 GMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQS 3568 Query 3598 TQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3657 TQWSLFFF+YENAFLPFA+GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMVYMPA Sbjct 3569 TQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3628 Query 3658 SWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL 3717 SWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLLILMTARTVYDD ARRVWTLMNV+TL Sbjct 3629 SWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITL 3688 Query 3718 VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQ 3777 VYKVYYGN+LDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITGNTLQ Sbjct 3689 VYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQ 3748 Query 3778 CIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDA 3837 CIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+SIDA Sbjct 3749 CIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDA 3808 Query 3838 FKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3897 FKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND Sbjct 3809 FKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3868 Query 3898 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAF 3957 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA+ Sbjct 3869 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAY 3928 Query 3958 ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQAR 4017 ATAQEAYEQAV+NGDSEVVLKKLKKSLNVAKSEFD DAAMQRKLEKMADQAMTQMYKQAR Sbjct 3929 ATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQAR 3988 Query 4018 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDY 4077 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV+PDY Sbjct 3989 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDY 4048 Query 4078 NTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAV 4137 TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNSPNLAWPLIVTALRANSAV Sbjct 4049 GTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAV 4108 Query 4138 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFP 4197 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN KGGRFVLALLSD QDLKWARFP Sbjct 4109 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFP 4168 Query 4198 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA 4257 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA Sbjct 4169 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA 4228 Query 4258 TEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD 4317 TEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD Sbjct 4229 TEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD 4288 Query 4318 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWK 4377 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVCGMWK Sbjct 4289 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWK 4348 Query 4378 GYGCSCDQLREPMLQSADAQSFLNGFAV 4405 GYGCSCDQLREPM+QSADA +FLNGFAV Sbjct 4349 GYGCSCDQLREPMMQSADASTFLNGFAV 4376 >sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 279/2005 OX=389167 GN=1a PE=3 SV=1 Length=4388 Score = 6083 bits (15780), Expect = 0.0, Method: Composition-based stats. Identities = 3524/4415 (80%), Positives = 3925/4415 (89%), Gaps = 37/4415 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESL G +EKTHVQLSLPVLQVRDVLVRGFGDSVEE L+EAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA+ HG+ +VELVAEL+GIQYGRSG TLGVLVPHVGE PVAYR Sbjct 61 LPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYG DLKS+DLG ELGTDP ED+++NWNTKH GV REL+RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A+TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 AFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIG +HTG+ G+ E LN++L+EIL +++VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SAST AFV+TVKGLDYK FK IVESCGNFKVT+G+AKKGAWNIG++KSIL+PLY F S+A Sbjct 481 SASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIF+R L+TA +S+ LQ+AAITILDGIS+ SLRLIDAM++TSDL TN+++VMAY Sbjct 541 AGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ +QWL+N+ GT +KLKPV W+E K G+EFLRD WEI+KF+ T +IV Sbjct 601 VTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + +KE V+ F ++NK L +C D +II GAKL+ LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPL+APKE+ F EG++ T +EEVVLK G+L+ LE P ++G Sbjct 721 IRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVC+NGLMLLE+KD E+YCAL+P ++ TNN F+LKGGAP K VTFG+DTV+EVQGYK+V Sbjct 781 TPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 KITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQ--YEYGTEDDYQG 957 WS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ + E+EE P +EYGTEDDY+G Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKG 960 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 PLEFGA++ QQ +++ + + Sbjct 961 LPLEFGASTE----------------IQQVDEEEEEDWLEEAIAAK-----------PEP 993 Query 1018 PVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNK 1077 + VN F+GYLKLTDNV IK DIV+EA+ KPTV+VNAANV+LKHGGGVAGALNK Sbjct 994 EPLPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNK 1053 Query 1078 ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYEN 1137 ATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK C+HVVGPN+N GED+QLLK+AY N Sbjct 1054 ATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYAN 1113 Query 1138 FNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK 1197 FN +VLLAPLLSAGIFGA P+ SL++CV+TVRT VY AV D++LYD +V +L+ K Sbjct 1114 FNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPK 1173 Query 1198 --QVEQKIAEIPKEEVKPFITESKPSVEQ----RKQDDKKIKACVEEVTTTLEETKFLTE 1251 Q+ E+ ++ +T+ +E+ K D K KA +EEV T+LEETKFLT Sbjct 1174 VETPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVKFKARIEEVNTSLEETKFLTS 1233 Query 1252 NLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTE 1311 LLL+ DING L+ DS ++ D+ FL+KDAPYIVGDV+ G +T V+IP KKAGGTTE Sbjct 1234 RLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTE 1293 Query 1312 MLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTV 1371 MLAKAL+KVP YITTYPGQG GYT+EEAKT L+KCKS FY+LPS N+K+EILGTV Sbjct 1294 MLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTV 1353 Query 1372 SWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTV 1431 SWNLREMLAHAEETRKLM +C++ KA++STI R+YKGIK+QEG+VDYG RF+FYTSK V Sbjct 1354 SWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPV 1413 Query 1432 ASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLT 1491 AS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VSVSSPDAVT YNGYLT Sbjct 1414 ASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLT 1473 Query 1492 SSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEV 1550 SSSKT EEHFIET+SLAG Y+DWSYSGQ T+LG+EFLKRGDK VY+T +P FHLDGEV Sbjct 1474 SSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEV 1533 Query 1551 ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPH 1610 + D LK+LLSLREVRTIKVFTTVDN NLHTQ+VDMSMTYGQQFGPTYLDGADVTKIKPH Sbjct 1534 LLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPH 1593 Query 1611 NSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWA 1670 HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQ+ GLTSIKWA Sbjct 1594 AKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWA 1653 Query 1671 DNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRE 1730 DNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AANFCALILAY N+TVGELGDVRE Sbjct 1654 DNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRE 1713 Query 1731 TMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCG 1790 TM++L QHANL+S KRVLNVVCKTCGQ+ TTL GVEAVMYMGTLSYE+ K GV IPC CG Sbjct 1714 TMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICG 1773 Query 1791 KQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDG 1850 + AT+YLVQQES FVMMSAPP++Y L+ G F CA+EYTG+YQCGHY H+T KETLY IDG Sbjct 1774 RDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDG 1833 Query 1851 ALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQ 1910 A LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV+ TEI PKLD YYKKDN+Y+TEQ Sbjct 1834 AYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQ 1893 Query 1911 PIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAI 1970 PIDLVP QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL VTFFPDLNGDVVAI Sbjct 1894 PIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAI 1953 Query 1971 DYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKS 2030 DY+HY+ SFKKGAKLLHKPI+WH+N TNK TYKPNTWC+RCLWSTKPVETSNSF+VL+ Sbjct 1954 DYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEV 2013 Query 2031 EDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEV 2090 ED QGMDNLACE P SEEVVENPTIQK+V+EC+VKT EVVG++ILKP+ +K+T+E+ Sbjct 2014 EDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQEL 2073 Query 2091 GHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVV 2150 GH DLMAAYV+ +S+TIKKPNELS LGL+TLATHG AA+NSVPW I Y KPFL + Sbjct 2074 GHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAA 2133 Query 2151 STTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFC 2210 TTTN + RC+ RV NYMPY TLL QLCTFTRSTNSRI+AS+PTTIAKN+VKSV K C Sbjct 2134 VTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLC 2193 Query 2211 LEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGY 2270 L+ NY+KSP FSKL I +W LLLS+CLGSLIY TAA GVL+SNLG+PSYC G RE Y Sbjct 2194 LDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESY 2253 Query 2271 LNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLA 2330 +NS+NVT +C GS CSVCL+GLDSLD+YP+LETIQ+TISS+K DLT+ GL AEWFLA Sbjct 2254 VNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLA 2313 Query 2331 YILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASF 2390 Y+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFA Sbjct 2314 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFC 2373 Query 2391 YYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNW 2450 YYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HNW Sbjct 2374 YYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNW 2433 Query 2451 NCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQ 2510 NC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+VDSV VKNG++HLYFDKAGQ Sbjct 2434 NCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQ 2493 Query 2511 KTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPIL 2570 KTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES+AKSASVYYSQLMCQPIL Sbjct 2494 KTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPIL 2553 Query 2571 LLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVL 2630 LLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VL Sbjct 2554 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 2613 Query 2631 STFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGA 2690 STF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLGA Sbjct 2614 STFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGA 2673 Query 2691 CIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQV 2750 CIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQV Sbjct 2674 CIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 2733 Query 2751 VNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYK 2810 VN +TTKI+LKGGKIV+ W K ++K TL+ + A Y+I PVH +S H +++EIIGYK Sbjct 2734 VNAITTKISLKGGKIVSTWFKLMLKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGYK 2793 Query 2811 AIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLP 2870 AI GVTRDI +TD CFANKHA FD+WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGLP Sbjct 2794 AIQDGVTRDIMATDDCFANKHAGFDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGLP 2853 Query 2871 GTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPV 2930 GT+LR NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPV Sbjct 2854 GTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPV 2913 Query 2931 PYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE 2990 PYCYDTN+LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCE Sbjct 2914 PYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCE 2973 Query 2991 RSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAG 3050 RSEAGVC+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAG Sbjct 2974 RSEAGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAG 3033 Query 3051 GIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYL 3110 GI+AI+VTC AYYFM+FRRAFGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYS+ YL Sbjct 3034 GIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYL 3093 Query 3111 YLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGV 3170 YLTFY TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KH +WFF+NYL++RV+FNGV Sbjct 3094 YLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGV 3153 Query 3171 SFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAA 3230 +FSTFEEAALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAA Sbjct 3154 TFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAA 3213 Query 3231 CCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTL 3290 CCHLAKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTL Sbjct 3214 CCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTL 3273 Query 3291 NGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVL 3350 NGLWLDD VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L Sbjct 3274 NGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLL 3333 Query 3351 KLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGS 3410 +LKVDT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN+TIKGSFLNGSCGS Sbjct 3334 RLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGS 3393 Query 3411 VGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAW 3470 VGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAW Sbjct 3394 VGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAW 3453 Query 3471 LYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAS 3530 LYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+ Sbjct 3454 LYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAA 3513 Query 3531 LKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTS 3590 LKELLQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTS Sbjct 3514 LKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTS 3573 Query 3591 LLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYF 3650 LL+LVQSTQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYF Sbjct 3574 LLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYF 3633 Query 3651 NMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWT 3710 NMVYMPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLL+LMTARTVYDD ARRVWT Sbjct 3634 NMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWT 3693 Query 3711 LMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFF 3770 LMNV+TLVYKVYYGN+LDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ F Sbjct 3694 LMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLF 3753 Query 3771 ITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLP 3830 ITGNTLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLP Sbjct 3754 ITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLP 3813 Query 3831 PKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQ 3890 PK+SIDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQ Sbjct 3814 PKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQ 3873 Query 3891 CVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSS 3950 CVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSS Sbjct 3874 CVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSS 3933 Query 3951 LPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMT 4010 LPSYAA+ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMT Sbjct 3934 LPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMT 3993 Query 4011 QMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKL 4070 QMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKL Sbjct 3994 QMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKL 4053 Query 4071 MVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTA 4130 MVV+PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNS NLAWPLIVTA Sbjct 4054 MVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVTA 4113 Query 4131 LRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQD 4190 LRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QD Sbjct 4114 LRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQD 4173 Query 4191 LKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATV 4250 LKWARFPKSDGTGTIYTELEPPCRFVTDTP+GPKVKYLYFIKGLNNLNRGMVLGSLAATV Sbjct 4174 LKWARFPKSDGTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATV 4233 Query 4251 RLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV 4310 RLQAGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV Sbjct 4234 RLQAGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV 4293 Query 4311 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 4370 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTVC Sbjct 4294 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVC 4353 Query 4371 TVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 TVCG WKGYGCSCDQLREPM+QSADA +FLNGFAV Sbjct 4354 TVCGTWKGYGCSCDQLREPMMQSADASTFLNGFAV 4388 >sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 6078 bits (15768), Expect = 0.0, Method: Composition-based stats. Identities = 3532/4404 (80%), Positives = 3920/4404 (89%), Gaps = 35/4404 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA + HGH +VELVAEL+GIQ+GRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SG REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 TRYVDNNFCGPDGYPLECIKD LARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVFSYVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIG NHTG+ GE E LN++LLEIL +E+VNINIVGDF+ NEE+AIILASF Sbjct 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SAS SAF+ETVKGLDYK+FK IVESCGN+KVT GK GAWNIG+Q+SIL+PL F S+A Sbjct 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIFSRTL+ A +S+ LQ+AA+T LDGIS+ SLRL+DAM++TSDL TN++VVMAY Sbjct 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ T QWL+N+ GT +KLKPV W+E K GVEFLRD WEI+KF+ T +++ Sbjct 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI IKE V+ F +VNK L +C D + I G KL+ALNLGE F+ S+GLYR+C Sbjct 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG+ T + +EEVVLK+G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVCINGLMLLE+++ E+YCAL+P ++ TNN F LKGGAP K VTFG+DTV+EVQGYK+V Sbjct 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLTP+GIDLDE Sbjct 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKP 959 WS+AT+YLFD++GE KL+S MYCSFYPPD EEE E E+ E + ++EYGTEDDY+G P Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPD--EEEDCEECEDEEETCEHEYGTEDDYKGLP 958 Query 960 LEFGATSAALQPEEEQEE-DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 1018 LEFGA++ EEE+EE DWLDD + Sbjct 959 LEFGASTETPHVEEEEEEEDWLDDAIEAEP---------------------------EPE 991 Query 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 + VN F GYLKLTDNV IK DIV+EA+ KPTV+VNAAN +LKHGGGVAGALNKA Sbjct 992 PLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKA 1051 Query 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 1138 TN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLHVVGPN+N GED+QLLK AYENF Sbjct 1052 TNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENF 1111 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 N +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLAV DK+LYD++V +L+ K Sbjct 1112 NSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKV 1171 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYID 1258 E PK E + +P E+ KIKAC++EVTTTLEETKFLT LLL+ D Sbjct 1172 ESPNKEEEPKLEEPKAV---QPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFAD 1228 Query 1259 INGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALR 1318 ING L+ DS ++ D++FL+KDAPYIVGDV+ G +T V+IP KK+GGTTEMLA+AL+ Sbjct 1229 INGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALK 1288 Query 1319 KVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREM 1378 +VP YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS NEK+E+LGTVSWNLREM Sbjct 1289 EVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREM 1348 Query 1379 LAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINTL 1438 LAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QEG+VDYG RF+FYTSK VAS+I L Sbjct 1349 LAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKL 1408 Query 1439 NDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTPE 1498 N LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VSVSSPDAVTAYNGYLTSSSKTPE Sbjct 1409 NSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPE 1468 Query 1499 EHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEVITFDNLK 1557 E+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY+T +P FHLDGEV+ D LK Sbjct 1469 EYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLK 1528 Query 1558 TLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKT 1617 +LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQQFGPTYLDGADVTKIKPH +HEGKT Sbjct 1529 SLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKT 1588 Query 1618 FYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLA 1677 F+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNNCYL+ Sbjct 1589 FFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLS 1648 Query 1678 TALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQ 1737 + LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM++L Q Sbjct 1649 SVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQ 1708 Query 1738 HANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYL 1797 HANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMGTLSY++ K GV IPC CG+ AT+YL Sbjct 1709 HANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYL 1768 Query 1798 VQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSS 1857 VQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQCGHY HIT+KETLY +DGA LTK S Sbjct 1769 VQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMS 1828 Query 1858 EYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPN 1917 EYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI+PKLD YYKK N+Y+TEQPIDLVP Sbjct 1829 EYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPT 1888 Query 1918 QPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTP 1977 QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL VTFFPDLNGDVVAIDY+HY+ Sbjct 1889 QPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYST 1948 Query 1978 SFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMD 2037 SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RCLWSTKPV+TSNSF+VL ED QGMD Sbjct 1949 SFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMD 2008 Query 2038 NLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 2097 NLACE SEEVVENPT+QK+++EC+VKTTEVVG++ILKP+ +K+T+E+GH DLMA Sbjct 2009 NLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIV 2157 AYV+ +S+TIKKPNELS LGLKTLATHG AA+NSVPW I Y KPFL + T+N + Sbjct 2069 AYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCI 2128 Query 2158 TRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNY 2217 +C+ RV +NYMPY TLL QLCTFT+STNSRIKAS+PTTIAKN+VKSV K CL+ NY Sbjct 2129 KKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINY 2188 Query 2218 LKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVT 2277 +KSP FSKL I++W LLLS+CLGSL Y TA LGV +S+LG+PSYC G RE Y+NS+NVT Sbjct 2189 VKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVT 2248 Query 2278 IATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRF 2337 +C G PCSVCLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEW LAY+LFT+F Sbjct 2249 TMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKF 2308 Query 2338 FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 2397 FY+LGL+AIMQ FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYYVWKSY Sbjct 2309 FYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSY 2368 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 VH++DGC SSTCMMCYKRNRATRVECTTIVNGV+RSFYVYANGG+GFCK HNWNC+NCDT Sbjct 2369 VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDT 2428 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 2517 FCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSVTVKNG++HLYFDKAGQKTYERH Sbjct 2429 FCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHP 2488 Query 2518 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV 2577 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES+AKSASVYYSQLMCQPILLLDQALV Sbjct 2489 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALV 2548 Query 2578 SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAA 2637 SDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF+SAA Sbjct 2549 SDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAA 2608 Query 2638 RQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSAR 2697 RQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN+MLTYNKVENMTPRDLGACIDC+AR Sbjct 2609 RQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNAR 2668 Query 2698 HINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTK 2757 HINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV+TTK Sbjct 2669 HINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTK 2728 Query 2758 IALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVT 2817 I+LKGGK+V+ W K L+KVTL+ + A Y+I PVH +S H +++EIIGYKAI GVT Sbjct 2729 ISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVT 2788 Query 2818 RDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTT 2877 RDI STD CFANKHA FD+WFSQRGGSY NDK CP++AA+ITRE+GF+VPGLPGT+LR Sbjct 2789 RDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRAL 2848 Query 2878 NGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTN 2937 NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPVPYCYDTN Sbjct 2849 NGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTN 2908 Query 2938 VLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVC 2997 +LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCERSE GVC Sbjct 2909 LLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVC 2968 Query 2998 VSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVV 3057 +STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+AI+V Sbjct 2969 LSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILV 3028 Query 3058 TCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLT 3117 TC AYYFM+FRRAFGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYS+ YLYLTFY T Sbjct 3029 TCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFT 3088 Query 3118 NDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEE 3177 NDVSFLAH+QW MF+P+VPFWIT Y+ CIS KHF+WFFSNYLK+RV+FNGV+FSTFEE Sbjct 3089 NDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEE 3148 Query 3178 AALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKA 3237 AALCTFLLNKEMYL+LRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCHLAKA Sbjct 3149 AALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKA 3208 Query 3238 LNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD 3297 LNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD Sbjct 3209 LNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD 3268 Query 3298 VVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTA 3357 VYCPRHV+CT+EDMLNPNY+DLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LKVDT+ Sbjct 3269 TVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTS 3328 Query 3358 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDY 3417 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGFNIDY Sbjct 3329 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDY 3388 Query 3418 DCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVIN 3477 DCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAAVIN Sbjct 3389 DCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVIN 3448 Query 3478 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQN 3537 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKELLQN Sbjct 3449 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQN 3508 Query 3538 GMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQS 3597 GMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTSLL+LVQS Sbjct 3509 GMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQS 3568 Query 3598 TQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3657 TQWSLFFF+YENAFLPFA+GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMVYMPA Sbjct 3569 TQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3628 Query 3658 SWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL 3717 SWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLLILMTARTVYDD ARRVWTLMNV+TL Sbjct 3629 SWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITL 3688 Query 3718 VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQ 3777 VYKVYYGN+LDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITGNTLQ Sbjct 3689 VYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQ 3748 Query 3778 CIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDA 3837 CIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+SIDA Sbjct 3749 CIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDA 3808 Query 3838 FKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3897 FKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND Sbjct 3809 FKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3868 Query 3898 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAF 3957 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA+ Sbjct 3869 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAY 3928 Query 3958 ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQAR 4017 ATAQEAYEQAV+NGDSEVVLKKLKKSLNVAKSEFD DAAMQRKLEKMADQAMTQMYKQAR Sbjct 3929 ATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQAR 3988 Query 4018 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDY 4077 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV+PDY Sbjct 3989 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDY 4048 Query 4078 NTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAV 4137 TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNSPNLAWPLIVTALRANSAV Sbjct 4049 GTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAV 4108 Query 4138 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFP 4197 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN KGGRFVLALLSD QDLKWARFP Sbjct 4109 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFP 4168 Query 4198 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA 4257 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA Sbjct 4169 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA 4228 Query 4258 TEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD 4317 TEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD Sbjct 4229 TEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD 4288 Query 4318 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWK 4377 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVCGMWK Sbjct 4289 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWK 4348 Query 4378 GYGCSCDQLREPMLQSADAQSFLN 4401 GYGCSCDQLREPM+QSADA +FLN Sbjct 4349 GYGCSCDQLREPMMQSADASTFLN 4372 >sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 6072 bits (15752), Expect = 0.0, Method: Composition-based stats. Identities = 3520/4411 (80%), Positives = 3921/4411 (89%), Gaps = 37/4411 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESL G +EKTHVQLSLPVLQVRDVLVRGFGDSVEE L+EAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQLEQPYVFIKRSDA+ HG+ +VELVAEL+GIQYGRSG TLGVLVPHVGE PVAYR Sbjct 61 LPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHSYG DLKS+DLG ELGTDP ED+++NWNTKH GV REL+RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A+TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 AFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASANIG +HTG+ G+ E LN++L+EIL +++VNINIVGDF LNEE+AIILASF Sbjct 421 AYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SAST AFV+TVKGLDYK FK IVESCGNFKVT+G+AKKGAWNIG++KSIL+PLY F S+A Sbjct 481 SASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIF+R L+TA +S+ LQ+AAITILDGIS+ SLRLIDAM++TSDL TN+++VMAY Sbjct 541 AGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ +QWL+N+ GT +KLKPV W+E K G+EFLRD WEI+KF+ T +IV Sbjct 601 VTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + +KE V+ F ++NK L +C D +II GAKL+ LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPL+APKE+ F EG++ T +EEVVLK G+L+ LE P ++G Sbjct 721 IRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVC+NGLMLLE+KD E+YCAL+P ++ TNN F+LKGGAP K VTFG+DTV+EVQGYK+V Sbjct 781 TPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 KITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQ--YEYGTEDDYQG 957 WS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ + E+EE P +EYGTEDDY+G Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKG 960 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 PLEFGA++ QQ +++ + + Sbjct 961 LPLEFGASTE----------------IQQVDEEEEEDWLEEAIAAK-----------PEP 993 Query 1018 PVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNK 1077 + VN F+GYLKLTDNV IK DIV+EA+ KPTV+VNAANV+LKHGGGVAGALNK Sbjct 994 EPLPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNK 1053 Query 1078 ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYEN 1137 ATN AMQ ESDDYI NGPL VGGSC+LSGHNLAK C+HVVGPN+N GED+QLLK+AY N Sbjct 1054 ATNGAMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYAN 1113 Query 1138 FNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK 1197 FN +VLLAPLLSAGIFGA P+ SL++CV+TVRT VY AV D++LYD +V +L+ K Sbjct 1114 FNSQDVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPK 1173 Query 1198 --QVEQKIAEIPKEEVKPFITESKPSVEQ----RKQDDKKIKACVEEVTTTLEETKFLTE 1251 Q+ E+ ++ +T+ +E+ K D K KA +EEV T+LEETKFLT Sbjct 1174 VETPTQENLELKEQPAVETLTQENLELEELPVIEKPVDVKFKARIEEVNTSLEETKFLTS 1233 Query 1252 NLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTE 1311 LLL+ DING L+ DS ++ D+ FL+KDAPYIVGDV+ G +T V+IP KKAGGTTE Sbjct 1234 RLLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTE 1293 Query 1312 MLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTV 1371 MLAKAL+KVP YITTYPGQG GYT+EEAKT L+KCKS FY+LPS N+K+EILGTV Sbjct 1294 MLAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTV 1353 Query 1372 SWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTV 1431 SWNLREMLAHAEETRKLM +C++ KA++STI R+YKGIK+QEG+VDYG RF+FYTSK V Sbjct 1354 SWNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPV 1413 Query 1432 ASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLT 1491 AS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VSVSSPDAVT YNGYLT Sbjct 1414 ASIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLT 1473 Query 1492 SSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEV 1550 SSSKT EEHFIET+SLAG Y+DWSYSGQ T+LG+EFLKRGDK VY+T +P FHLDGEV Sbjct 1474 SSSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEV 1533 Query 1551 ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPH 1610 + D LK+LLSLREVRTIKVFTTVDN NLHTQ+VDMSMTYGQQFGPTYLDGADVTKIKPH Sbjct 1534 LLLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPH 1593 Query 1611 NSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWA 1670 HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQ+ GLTSIKWA Sbjct 1594 AKHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWA 1653 Query 1671 DNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRE 1730 DNNCYL++ LL LQQIE+KFN PALQ+AYYRARAG+AANFCALILAY N+TVGELGDVRE Sbjct 1654 DNNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRE 1713 Query 1731 TMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCG 1790 TM++L QHANL+S KRVLNVVCKTCGQ+ TTL GVEAVMYMGTLSYE+ K GV IPC CG Sbjct 1714 TMTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICG 1773 Query 1791 KQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDG 1850 + AT+YLVQQES FVMMSAPP++Y L+ G F CA+EYTG+YQCGHY H+T KETLY IDG Sbjct 1774 RDATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDG 1833 Query 1851 ALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQ 1910 A LTK SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV+ TEI PKLD YYKKDN+Y+TEQ Sbjct 1834 AYLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQ 1893 Query 1911 PIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAI 1970 PIDLVP QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL VTFFPDLNGDVVAI Sbjct 1894 PIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAI 1953 Query 1971 DYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKS 2030 DY+HY+ SFKKGAKLLHKPI+WH+N TNK TYKPNTWC+RCLWSTKPVETSNSF+VL+ Sbjct 1954 DYRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEV 2013 Query 2031 EDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEV 2090 ED QGMDNLACE P SEEVVENPTIQK+V+EC+VKT EVVG++ILKP+ +K+T+E+ Sbjct 2014 EDTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQEL 2073 Query 2091 GHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVV 2150 GH DLMAAYV+ +S+TIKKPNELS LGL+TLATHG AA+NSVPW I Y KPFL + Sbjct 2074 GHEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAA 2133 Query 2151 STTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFC 2210 TTTN + RC+ RV NYMPY TLL QLCTFTRSTNSRI+AS+PTTIAKN+VKSV K C Sbjct 2134 VTTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLC 2193 Query 2211 LEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGY 2270 L+ NY+KSP FSKL I +W LLLS+CLGSLIY TAA GVL+SNLG+PSYC G RE Y Sbjct 2194 LDVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESY 2253 Query 2271 LNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLA 2330 +NS+NVT +C GS CSVCL+GLDSLD+YP+LETIQ+TISS+K DLT+ GL AEWFLA Sbjct 2254 VNSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLA 2313 Query 2331 YILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASF 2390 Y+LFT+FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFA Sbjct 2314 YMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFC 2373 Query 2391 YYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNW 2450 YYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HNW Sbjct 2374 YYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNW 2433 Query 2451 NCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQ 2510 NC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+VDSV VKNG++HLYFDKAGQ Sbjct 2434 NCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQ 2493 Query 2511 KTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPIL 2570 KTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES+AKSASVYYSQLMCQPIL Sbjct 2494 KTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPIL 2553 Query 2571 LLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVL 2630 LLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VL Sbjct 2554 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 2613 Query 2631 STFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGA 2690 STF+SAARQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLGA Sbjct 2614 STFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGA 2673 Query 2691 CIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQV 2750 CIDC+ARHINAQVAKSHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQV Sbjct 2674 CIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 2733 Query 2751 VNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYK 2810 VN +TTKI+LKGGKIV+ W K ++K TL+ + A Y+I PVH +S H +++EIIGYK Sbjct 2734 VNAITTKISLKGGKIVSTWFKLMLKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGYK 2793 Query 2811 AIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLP 2870 AI GVTRDI +TD CFANKHA FD+WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGLP Sbjct 2794 AIQDGVTRDIMATDDCFANKHAGFDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGLP 2853 Query 2871 GTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPV 2930 GT+LR NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPV Sbjct 2854 GTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPV 2913 Query 2931 PYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE 2990 PYCYDTN+LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCE Sbjct 2914 PYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCE 2973 Query 2991 RSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAG 3050 RSEAGVC+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAG Sbjct 2974 RSEAGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAG 3033 Query 3051 GIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYL 3110 GI+AI+VTC AYYFM+FRRAFGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYS+ YL Sbjct 3034 GIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYL 3093 Query 3111 YLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGV 3170 YLTFY TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KH +WFF+NYL++RV+FNGV Sbjct 3094 YLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGV 3153 Query 3171 SFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAA 3230 +FSTFEEAALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAA Sbjct 3154 TFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAA 3213 Query 3231 CCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTL 3290 CCHLAKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTL Sbjct 3214 CCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTL 3273 Query 3291 NGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVL 3350 NGLWLDD VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L Sbjct 3274 NGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLL 3333 Query 3351 KLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGS 3410 +LKVDT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN+TIKGSFLNGSCGS Sbjct 3334 RLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGS 3393 Query 3411 VGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAW 3470 VGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAW Sbjct 3394 VGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAW 3453 Query 3471 LYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAS 3530 LYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+ Sbjct 3454 LYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAA 3513 Query 3531 LKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTS 3590 LKELLQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTS Sbjct 3514 LKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTS 3573 Query 3591 LLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYF 3650 LL+LVQSTQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYF Sbjct 3574 LLILVQSTQWSLFFFVYENAFLPFTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYF 3633 Query 3651 NMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWT 3710 NMVYMPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLL+LMTARTVYDD ARRVWT Sbjct 3634 NMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWT 3693 Query 3711 LMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFF 3770 LMNV+TLVYKVYYGN+LDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ F Sbjct 3694 LMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLF 3753 Query 3771 ITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLP 3830 ITGNTLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLP Sbjct 3754 ITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLP 3813 Query 3831 PKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQ 3890 PK+SIDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQ Sbjct 3814 PKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQ 3873 Query 3891 CVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSS 3950 CVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSS Sbjct 3874 CVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSS 3933 Query 3951 LPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMT 4010 LPSYAA+ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMT Sbjct 3934 LPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMT 3993 Query 4011 QMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKL 4070 QMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKL Sbjct 3994 QMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKL 4053 Query 4071 MVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTA 4130 MVV+PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNS NLAWPLIVTA Sbjct 4054 MVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVTA 4113 Query 4131 LRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQD 4190 LRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QD Sbjct 4114 LRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQD 4173 Query 4191 LKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATV 4250 LKWARFPKSDGTGTIYTELEPPCRFVTDTP+GPKVKYLYFIKGLNNLNRGMVLGSLAATV Sbjct 4174 LKWARFPKSDGTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATV 4233 Query 4251 RLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV 4310 RLQAGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV Sbjct 4234 RLQAGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV 4293 Query 4311 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 4370 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTVC Sbjct 4294 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVC 4353 Query 4371 TVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 TVCG WKGYGCSCDQLREPM+QSADA +FLN Sbjct 4354 TVCGTWKGYGCSCDQLREPMMQSADASTFLN 4384 >sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus Rp3/2004 OX=349344 GN=1a PE=3 SV=1 Length=4380 Score = 6066 bits (15738), Expect = 0.0, Method: Composition-based stats. Identities = 3518/4409 (80%), Positives = 3929/4409 (89%), Gaps = 33/4409 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK GTCG+VE+EKGV Sbjct 1 MESLVLGINEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKSGTCGIVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQ EQPYVFIKRSDA+ HGH + ELVAEL+G+QYGRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQPEQPYVFIKRSDAQGTDHGHRVRELVAELDGVQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SGV REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGVLRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCR+H HEIAW Sbjct 181 ALTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCRDHGHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TCGYL Sbjct 301 RSVYPVATPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + E+GPEHS A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSAADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF+LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFQLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+ +S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPIKGAWNIGQHRSVLTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIFSRTL+ A +S+ LQ+AA+TILD IS+ SLRL+DAM++TS+L TN++++MAY Sbjct 541 AGVIRSIFSRTLDAANHSIPDLQRAAVTILDSISEQSLRLVDAMVYTSNLLTNSVIIMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ TSQWL+N+ T EKL+P+ W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLDTTVEKLRPIFAWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFVDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAVVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVCINGLMLLEIK E+YCAL+P ++ TNN F LKGGAPTK VTFG+DTV+EVQGYK+V Sbjct 781 TPVCINGLMLLEIKANEQYCALSPGLLATNNVFRLKGGAPTKGVTFGEDTVVEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEP--STQYEYGTEDDYQG 957 WS+AT+YLFD+SGE KL+S MYCSFYPPDE+E+ + EEEE + ++EYGTE+DY+G Sbjct 901 WSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYEEEEEVSERTCEHEYGTEEDYKG 960 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 PLEFGA++ +Q EE++EEDWLDD Sbjct 961 LPLEFGASTDIIQVEEQEEEDWLDDAV---------------------------EAEPEP 993 Query 1018 PVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNK 1077 + VN +GYLKLTDNV IK DIVEEA+ P V+VNAAN++LKHGGGVAGALNK Sbjct 994 EPLHEEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPMVIVNAANIHLKHGGGVAGALNK 1053 Query 1078 ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYEN 1137 ATN AMQ ESD YI NGPL VGGSC+LSGHNLAK CLHVVGPN+N GEDIQLLK+AYEN Sbjct 1054 ATNGAMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYEN 1113 Query 1138 FNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK 1197 FN ++LLAPLLSAGIFGA P+ SL++CV TVRT VY+ V DK LY+++V +L+ K Sbjct 1114 FNSQDILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYIVVNDKVLYEQVVMDYLDSLKPK 1173 Query 1198 QVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYI 1257 K +PK E + K V++ KIKAC++EVTTTLEETKFLT LLL+ Sbjct 1174 VEAPKQEVLPKAEYPK--VDEKSVVQKTIDVKPKIKACIDEVTTTLEETKFLTNKLLLFT 1231 Query 1258 DINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKAL 1317 DING L+ DS ++ D++FL+KDAPY+VGDV+ G +T VVIP+KKAGGTTEML++AL Sbjct 1232 DINGKLYQDSKNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRAL 1291 Query 1318 RKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLRE 1377 +KVP + YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS N K+EILGTVSWNLRE Sbjct 1292 KKVPINEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNAKEEILGTVSWNLRE 1351 Query 1378 MLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINT 1437 MLAHAEETRKLMPVC++ +AI++TIQRKYKGIKIQEG+VDYG RF+FYTSK VAS+I Sbjct 1352 MLAHAEETRKLMPVCMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITK 1411 Query 1438 LNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTP 1497 LN LNE LVTMP+GYVTHG NLEEAAR MRSLK PA VSVSSPDAVT YNGYLTSSSKT Sbjct 1412 LNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAIVSVSSPDAVTTYNGYLTSSSKTS 1471 Query 1498 EEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEVITFDNL 1556 E+HF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRG+K VY+T +P FHLDGEV+ D L Sbjct 1472 EDHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGEKIVYHTLESPVKFHLDGEVLPLDKL 1531 Query 1557 KTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGK 1616 K+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQ GPTYL+GADVTKIKPH +HEGK Sbjct 1532 KSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQLGPTYLEGADVTKIKPHVNHEGK 1591 Query 1617 TFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYL 1676 TF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNNCYL Sbjct 1592 TFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYL 1651 Query 1677 ATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLF 1736 ++ LL LQQIE+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM++L Sbjct 1652 SSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLL 1711 Query 1737 QHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKY 1796 QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTLSY+ K GV IPC CG+ AT+Y Sbjct 1712 QHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKMGVSIPCVCGRDATQY 1771 Query 1797 LVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKS 1856 LVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCGHY HIT+KETLY IDGA LTK Sbjct 1772 LVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKM 1831 Query 1857 SEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVP 1916 SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+PKLD YYKKDN+Y+TEQPIDL+P Sbjct 1832 SEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLIP 1891 Query 1917 NQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYT 1976 QP PNASFDNFK C N KFADDLNQ+TG+ KPASREL VTFFPDLNGDVVAIDY+HY+ Sbjct 1892 TQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYS 1951 Query 1977 PSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGM 2036 SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLWSTKPV+TSNSF+VL ED QGM Sbjct 1952 ASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGM 2011 Query 2037 DNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLM 2096 DNLACE +P EEVVENPTIQK+V+EC+VKTTEVVG++ILKP++ +K+T+E+ H DLM Sbjct 2012 DNLACESQQPTPEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELDHEDLM 2071 Query 2097 AAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNI 2156 AAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVPW I Y KPFL + TT+N Sbjct 2072 AAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWGKILAYVKPFLGQAAVTTSNC 2131 Query 2157 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 2216 R + R+ NYMPY TLL QLCTFT+STNSRI+AS+PTTIAKN+V+ + + CL+A N Sbjct 2132 AKRLVQRMFNNYMPYVLTLLFQLCTFTKSTNSRIRASLPTTIAKNSVRGIVRLCLDAGIN 2191 Query 2217 YLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNV 2276 Y+KSP FSKL I +W LLLS+CLGSLIY TAALGVL+SN G PSYC+G RE YLNS+NV Sbjct 2192 YVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAALGVLLSNFGAPSYCSGVRESYLNSSNV 2251 Query 2277 TIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTR 2336 T +C GS PCSVCLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEWF AY+LFT+ Sbjct 2252 TTMDFCEGSFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWFFAYMLFTK 2311 Query 2337 FFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKS 2396 FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYY+WKS Sbjct 2312 FFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKS 2371 Query 2397 YVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCD 2456 YVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HNWNC+NCD Sbjct 2372 YVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCD 2431 Query 2457 TFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERH 2516 TFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+VDSV VKNG++HLYFDKAGQKTYERH Sbjct 2432 TFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERH 2491 Query 2517 SLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 2576 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES+AKSASVYYSQLMCQPILLLDQAL Sbjct 2492 PLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQAL 2551 Query 2577 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 2636 VSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF+SA Sbjct 2552 VSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSA 2611 Query 2637 ARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSA 2696 +RQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLGACIDC+A Sbjct 2612 SRQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNA 2671 Query 2697 RHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTT 2756 RHINAQVA+SHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV+TT Sbjct 2672 RHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITT 2731 Query 2757 KIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGV 2816 KI+LKGGKIV+ W K ++K TL+ + A + Y++ PVH++S H +++EIIGYKAI GV Sbjct 2732 KISLKGGKIVSTWFKIMLKATLLCVLAALVCYIVMPVHILSVHGGYTNEIIGYKAIQDGV 2791 Query 2817 TRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 TRDI STD CFANKHA FD+WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGLPGT+LR Sbjct 2792 TRDIVSTDDCFANKHAGFDSWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTVLRA 2851 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 NGDFLHFLPRVFSAVGNICYTPSKLIEY+DF+TSACVLAAECTIFKDA GKPVPYCYDT Sbjct 2852 INGDFLHFLPRVFSAVGNICYTPSKLIEYSDFSTSACVLAAECTIFKDAMGKPVPYCYDT 2911 Query 2937 NVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGV 2996 N+LEGS++Y LRPDTRYVLMDGSIIQFPN YLEGSVRVVTTFD+EYCRHGTCERSEAG+ Sbjct 2912 NLLEGSISYSELRPDTRYVLMDGSIIQFPNAYLEGSVRVVTTFDAEYCRHGTCERSEAGI 2971 Query 2997 CVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIV 3056 C+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+AI+ Sbjct 2972 CLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAIL 3031 Query 3057 VTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYL 3116 VTC AYYFM+FRRAFGEY+HVVA N LFLMSFT+LCL P YSFLPGVYSV YLYLTFY Sbjct 3032 VTCAAYYFMKFRRAFGEYNHVVAANAPLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYF 3091 Query 3117 TNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFE 3176 TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KHF+WFF+NYL++RVVFNGV+FSTFE Sbjct 3092 TNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFNNYLRKRVVFNGVTFSTFE 3151 Query 3177 EAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAK 3236 EAALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCHLAK Sbjct 3152 EAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAK 3211 Query 3237 ALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLD 3296 ALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLD Sbjct 3212 ALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLD 3271 Query 3297 DVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDT 3356 D VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LKVDT Sbjct 3272 DTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDT 3331 Query 3357 ANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNID 3416 +NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGFNID Sbjct 3332 SNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNID 3391 Query 3417 YDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVI 3476 YDCVSFCYMHHMELPT VHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAAVI Sbjct 3392 YDCVSFCYMHHMELPTEVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVI 3451 Query 3477 NGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQ 3536 NGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKELLQ Sbjct 3452 NGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQ 3511 Query 3537 NGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQ 3596 NGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ KR +KGTHHW+LLT LTSLL+LVQ Sbjct 3512 NGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKRIVKGTHHWMLLTFLTSLLILVQ 3571 Query 3597 STQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP 3656 STQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMVYMP Sbjct 3572 STQWSLFFFVYENAFLPFTLGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMP 3631 Query 3657 ASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLT 3716 ASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLL+LMTARTVYDD ARRVWTLMNV+T Sbjct 3632 ASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLMNVIT 3691 Query 3717 LVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTL 3776 LVYKVYYGNALDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITGNTL Sbjct 3692 LVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTL 3751 Query 3777 QCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSID 3836 QCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+SID Sbjct 3752 QCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSID 3811 Query 3837 AFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHN 3896 AFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHN Sbjct 3812 AFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHN 3871 Query 3897 DILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA 3956 DILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA Sbjct 3872 DILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA 3931 Query 3957 FATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQA 4016 +ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDR+AAMQRKLEKMADQAMTQMYKQA Sbjct 3932 YATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRNAAMQRKLEKMADQAMTQMYKQA 3991 Query 4017 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPD 4076 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV+PD Sbjct 3992 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPD 4051 Query 4077 YNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSA 4136 Y TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+M+NS NLAWPLIVTALRANSA Sbjct 4052 YGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMENSSNLAWPLIVTALRANSA 4111 Query 4137 VKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARF 4196 VKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARF Sbjct 4112 VKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARF 4171 Query 4197 PKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGN 4256 PKSDGTGTIYTELEPPCRFVTDTPKGPKVKYL+FIKGLNNLNRGMVLGSLAATVRLQAGN Sbjct 4172 PKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLHFIKGLNNLNRGMVLGSLAATVRLQAGN 4231 Query 4257 ATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANM 4316 ATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANM Sbjct 4232 ATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANM 4291 Query 4317 DQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMW 4376 DQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVCGMW Sbjct 4292 DQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMW 4351 Query 4377 KGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 KGYGCSCDQLREPM+QSADA +FLNGFAV Sbjct 4352 KGYGCSCDQLREPMMQSADASTFLNGFAV 4380 >sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 6055 bits (15708), Expect = 0.0, Method: Composition-based stats. Identities = 3514/4405 (80%), Positives = 3925/4405 (89%), Gaps = 33/4405 (1%) Query 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK GTCG+VE+EKGV Sbjct 1 MESLVLGINEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKSGTCGIVELEKGV 60 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 LPQ EQPYVFIKRSDA+ HGH + ELVAEL+G+QYGRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQPEQPYVFIKRSDAQGTDHGHRVRELVAELDGVQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SGV REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGVLRELTRELNGG 180 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 A TRYVDNNFCGPDGYPLECIKDLLARAGK+ CTLSEQLD+I++KRGVYCCR+H HEIAW Sbjct 181 ALTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCRDHGHEIAW 240 Query 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 +TERS+KSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TCGYL Sbjct 301 RSVYPVATPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYL 360 Query 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 P NAVVK+ CPAC + E+GPEHS A+YHN S ++T LRKGGRT FGGCVF+YVGC+NK Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSAADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 AYWVPRASA+IG HTG+ G+ E LN++LLEIL +E+VNINIVGDF+LNEE+AIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFQLNEEVAIILASF 480 Query 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 SASTSAF++T+K LDYK+FK IVESCGN+KVTKGK KGAWNIG+ +S+L+PL F S+A Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPIKGAWNIGQHRSVLTPLCGFPSQA 540 Query 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 A V+RSIFSRTL+ A +S+ LQ+AA+TILD IS+ SLRL+DAM++TS+L TN++++MAY Sbjct 541 AGVIRSIFSRTLDAANHSIPDLQRAAVTILDSISEQSLRLVDAMVYTSNLLTNSVIIMAY 600 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 +TGG+VQ TSQWL+N+ T EKL+P+ W+E K GVEFL+D WEI+KF+ T +IV Sbjct 601 VTGGLVQQTSQWLSNLLDTTVEKLRPIFAWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 GQI + IK+ V+ F +VNK L +C D + I GAKL++LNLGE F+ SKGLYR+C Sbjct 661 KGQIQVASDNIKDCVKCFVDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 ++ +E+ LLMPLKAPKE+ FLEG++ T + +EEVVLK G+L+ LE P +VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAVVG 780 Query 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 TPVCINGLMLLEIK E+YCAL+P ++ TNN F LKGGAPTK VTFG+DTV+EVQGYK+V Sbjct 781 TPVCINGLMLLEIKANEQYCALSPGLLATNNVFRLKGGAPTKGVTFGEDTVVEVQGYKNV 840 Query 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 ITFELDER+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLT +GIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEP--STQYEYGTEDDYQG 957 WS+AT+YLFD+SGE KL+S MYCSFYPPDE+E+ + EEEE + ++EYGTE+DY+G Sbjct 901 WSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYEEEEEVSERTCEHEYGTEEDYKG 960 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 PLEFGA++ +Q EE++EEDWLDD Sbjct 961 LPLEFGASTDIIQVEEQEEEDWLDDAV---------------------------EAEPEP 993 Query 1018 PVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNK 1077 + VN +GYLKLTDNV IK DIVEEA+ P V+VNAAN++LKHGGGVAGALNK Sbjct 994 EPLHEEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPMVIVNAANIHLKHGGGVAGALNK 1053 Query 1078 ATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYEN 1137 ATN AMQ ESD YI NGPL VGGSC+LSGHNLAK CLHVVGPN+N GEDIQLLK+AYEN Sbjct 1054 ATNGAMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYEN 1113 Query 1138 FNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK 1197 FN ++LLAPLLSAGIFGA P+ SL++CV TVRT VY+ V DK LY+++V +L+ K Sbjct 1114 FNSQDILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYIVVNDKVLYEQVVMDYLDSLKPK 1173 Query 1198 QVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYI 1257 K +PK E + K V++ KIKAC++EVTTTLEETKFLT LLL+ Sbjct 1174 VEAPKQEVLPKAEYPK--VDEKSVVQKTIDVKPKIKACIDEVTTTLEETKFLTNKLLLFT 1231 Query 1258 DINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKAL 1317 DING L+ DS ++ D++FL+KDAPY+VGDV+ G +T VVIP+KKAGGTTEML++AL Sbjct 1232 DINGKLYQDSKNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRAL 1291 Query 1318 RKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLRE 1377 +KVP + YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS N K+EILGTVSWNLRE Sbjct 1292 KKVPINEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNAKEEILGTVSWNLRE 1351 Query 1378 MLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLINT 1437 MLAHAEETRKLMPVC++ +AI++TIQRKYKGIKIQEG+VDYG RF+FYTSK VAS+I Sbjct 1352 MLAHAEETRKLMPVCMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITK 1411 Query 1438 LNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSKTP 1497 LN LNE LVTMP+GYVTHG NLEEAAR MRSLK PA VSVSSPDAVT YNGYLTSSSKT Sbjct 1412 LNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAIVSVSSPDAVTTYNGYLTSSSKTS 1471 Query 1498 EEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYT-SNPTTFHLDGEVITFDNL 1556 E+HF+ET+SLAGSY+DWSYSGQ T+LG+EFLKRG+K VY+T +P FHLDGEV+ D L Sbjct 1472 EDHFVETVSLAGSYRDWSYSGQRTELGVEFLKRGEKIVYHTLESPVKFHLDGEVLPLDKL 1531 Query 1557 KTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGK 1616 K+LLSLREV+TIKVFTTVDN NLHTQ+VDMSMTYGQQ GPTYL+GADVTKIKPH +HEGK Sbjct 1532 KSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQLGPTYLEGADVTKIKPHVNHEGK 1591 Query 1617 TFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYL 1676 TF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNNCYL Sbjct 1592 TFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYL 1651 Query 1677 ATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLF 1736 ++ LL LQQIE+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM++L Sbjct 1652 SSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLL 1711 Query 1737 QHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKY 1796 QHANL+S KRVLNVVCK CGQ+ TTL GVEAVMYMGTLSY+ K GV IPC CG+ AT+Y Sbjct 1712 QHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKMGVSIPCVCGRDATQY 1771 Query 1797 LVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKS 1856 LVQQES FVMMSAPPA+Y+L+ GTF CA+EYTGNYQCGHY HIT+KETLY IDGA LTK Sbjct 1772 LVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKM 1831 Query 1857 SEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVP 1916 SEYKGP+TDVFYKE SYTTTIKPV+YKLDGV TEI+PKLD YYKKDN+Y+TEQPIDL+P Sbjct 1832 SEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLIP 1891 Query 1917 NQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYT 1976 QP PNASFDNFK C N KFADDLNQ+TG+ KPASREL VTFFPDLNGDVVAIDY+HY+ Sbjct 1892 TQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYS 1951 Query 1977 PSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGM 2036 SFKKGAKLLHKPIVWH+N AT K T+KPNTWC+RCLWSTKPV+TSNSF+VL ED QGM Sbjct 1952 ASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGM 2011 Query 2037 DNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLM 2096 DNLACE +P EEVVENPTIQK+V+EC+VKTTEVVG++ILKP++ +K+T+E+ H DLM Sbjct 2012 DNLACESQQPTPEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELDHEDLM 2071 Query 2097 AAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNI 2156 AAYV+N+S+TIKKPNELS LGLKT+ATHG+AA+NSVPW I Y KPFL + TT+N Sbjct 2072 AAYVENTSITIKKPNELSLALGLKTIATHGIAAINSVPWGKILAYVKPFLGQAAVTTSNC 2131 Query 2157 VTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFN 2216 R + R+ NYMPY TLL QLCTFT+STNSRI+AS+PTTIAKN+V+ + + CL+A N Sbjct 2132 AKRLVQRMFNNYMPYVLTLLFQLCTFTKSTNSRIRASLPTTIAKNSVRGIVRLCLDAGIN 2191 Query 2217 YLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNV 2276 Y+KSP FSKL I +W LLLS+CLGSLIY TAALGVL+SN G PSYC+G RE YLNS+NV Sbjct 2192 YVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAALGVLLSNFGAPSYCSGVRESYLNSSNV 2251 Query 2277 TIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTR 2336 T +C GS PCSVCLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEWF AY+LFT+ Sbjct 2252 TTMDFCEGSFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWFFAYMLFTK 2311 Query 2337 FFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKS 2396 FFY+LGL+AIMQ+FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYY+WKS Sbjct 2312 FFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKS 2371 Query 2397 YVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCD 2456 YVH++DGC SSTCMMCYKRNRATRVECTTIVNG++RSFYVYANGG+GFCK HNWNC+NCD Sbjct 2372 YVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCD 2431 Query 2457 TFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERH 2516 TFCAGSTFISDEVARDLSLQFKRPINPTDQSSY+VDSV VKNG++HLYFDKAGQKTYERH Sbjct 2432 TFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERH 2491 Query 2517 SLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQAL 2576 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ES+AKSASVYYSQLMCQPILLLDQAL Sbjct 2492 PLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQAL 2551 Query 2577 VSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISA 2636 VSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF+SA Sbjct 2552 VSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSA 2611 Query 2637 ARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSA 2696 +RQG VD+DV+TKDV+ECLKLSH SD+EVTGDSCNN+MLTYNKVENMTPRDLGACIDC+A Sbjct 2612 SRQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNA 2671 Query 2697 RHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTT 2756 RHINAQVA+SHN++LIWNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV+TT Sbjct 2672 RHINAQVARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITT 2731 Query 2757 KIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGV 2816 KI+LKGGKIV+ W K ++K TL+ + A + Y++ PVH++S H +++EIIGYKAI GV Sbjct 2732 KISLKGGKIVSTWFKIMLKATLLCVLAALVCYIVMPVHILSVHGGYTNEIIGYKAIQDGV 2791 Query 2817 TRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 TRDI STD CFANKHA FD+WFSQRGGSY NDK+CP++AA+ITRE+GF+VPGLPGT+LR Sbjct 2792 TRDIVSTDDCFANKHAGFDSWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTVLRA 2851 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 NGDFLHFLPRVFSAVGNICYTPSKLIEY+DF+TSACVLAAECTIFKDA GKPVPYCYDT Sbjct 2852 INGDFLHFLPRVFSAVGNICYTPSKLIEYSDFSTSACVLAAECTIFKDAMGKPVPYCYDT 2911 Query 2937 NVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGV 2996 N+LEGS++Y LRPDTRYVLMDGSIIQFPN YLEGSVRVVTTFD+EYCRHGTCERSEAG+ Sbjct 2912 NLLEGSISYSELRPDTRYVLMDGSIIQFPNAYLEGSVRVVTTFDAEYCRHGTCERSEAGI 2971 Query 2997 CVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIV 3056 C+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+AI+ Sbjct 2972 CLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAIL 3031 Query 3057 VTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYL 3116 VTC AYYFM+FRRAFGEY+HVVA N LFLMSFT+LCL P YSFLPGVYSV YLYLTFY Sbjct 3032 VTCAAYYFMKFRRAFGEYNHVVAANAPLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYF 3091 Query 3117 TNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFE 3176 TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KHF+WFF+NYL++RVVFNGV+FSTFE Sbjct 3092 TNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFNNYLRKRVVFNGVTFSTFE 3151 Query 3177 EAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAK 3236 EAALCTFLLNKEMYLKLRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCHLAK Sbjct 3152 EAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAK 3211 Query 3237 ALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLD 3296 ALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLD Sbjct 3212 ALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLD 3271 Query 3297 DVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDT 3356 D VYCPRHVICT+EDMLNPNYEDLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LKVDT Sbjct 3272 DTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDT 3331 Query 3357 ANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNID 3416 +NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGFNID Sbjct 3332 SNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNID 3391 Query 3417 YDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVI 3476 YDCVSFCYMHHMELPT VHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAAVI Sbjct 3392 YDCVSFCYMHHMELPTEVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVI 3451 Query 3477 NGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQ 3536 NGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKELLQ Sbjct 3452 NGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQ 3511 Query 3537 NGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQ 3596 NGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ KR +KGTHHW+LLT LTSLL+LVQ Sbjct 3512 NGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKRIVKGTHHWMLLTFLTSLLILVQ 3571 Query 3597 STQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP 3656 STQWSLFFF+YENAFLPF +GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMVYMP Sbjct 3572 STQWSLFFFVYENAFLPFTLGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMP 3631 Query 3657 ASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLT 3716 ASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLL+LMTARTVYDD ARRVWTLMNV+T Sbjct 3632 ASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLMNVIT 3691 Query 3717 LVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTL 3776 LVYKVYYGNALDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITGNTL Sbjct 3692 LVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTL 3751 Query 3777 QCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSID 3836 QCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+SID Sbjct 3752 QCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSID 3811 Query 3837 AFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHN 3896 AFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHN Sbjct 3812 AFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHN 3871 Query 3897 DILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA 3956 DILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA Sbjct 3872 DILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA 3931 Query 3957 FATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQA 4016 +ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDR+AAMQRKLEKMADQAMTQMYKQA Sbjct 3932 YATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRNAAMQRKLEKMADQAMTQMYKQA 3991 Query 4017 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPD 4076 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV+PD Sbjct 3992 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPD 4051 Query 4077 YNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSA 4136 Y TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+M+NS NLAWPLIVTALRANSA Sbjct 4052 YGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMENSSNLAWPLIVTALRANSA 4111 Query 4137 VKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARF 4196 VKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARF Sbjct 4112 VKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARF 4171 Query 4197 PKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGN 4256 PKSDGTGTIYTELEPPCRFVTDTPKGPKVKYL+FIKGLNNLNRGMVLGSLAATVRLQAGN Sbjct 4172 PKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLHFIKGLNNLNRGMVLGSLAATVRLQAGN 4231 Query 4257 ATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANM 4316 ATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANM Sbjct 4232 ATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANM 4291 Query 4317 DQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMW 4376 DQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVCGMW Sbjct 4292 DQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMW 4351 Query 4377 KGYGCSCDQLREPMLQSADAQSFLN 4401 KGYGCSCDQLREPM+QSADA +FLN Sbjct 4352 KGYGCSCDQLREPMMQSADASTFLN 4376 >sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus HKU5 OX=694008 GN=1a PE=3 SV=1 Length=4481 Score = 4665 bits (12100), Expect = 0.0, Method: Composition-based stats. Identities = 1496/4576 (33%), Positives = 2332/4576 (51%), Gaps = 297/4576 (6%) Query 9 NEKT--HVQLSLPVLQVRDVLV---RGFGDSVEEVLSEARQHLKDGTCGLV--EVEKGVL 61 EK HV L + D+++ F D E + L G+ L + KG + Sbjct 22 TEKRTDHVSLKASLCDAGDLVLKISPWFMDG-ESAYKHVSEQLSKGSKLLFVPQTLKGFI 80 Query 62 PQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETL-----GVLVPHVGEIPV 116 L P V++ MV +A G G TL G+ P ++ Sbjct 81 RHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQGKRVGMFFPFDADLVT 140 Query 117 AYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRE 176 + LLRK KG GG+ + D + PY D + ++ L+++ Sbjct 141 GEFQFLLRK---KGFGGNRFR------DAPWDYNWTPYSDLMDALEADPCGKYSQSLLKK 191 Query 177 LNGGAYTRYVDNNFCGPDGYPLECIKDLLARAG--KASCTLSEQLDFIDTKRGVYCCREH 234 L GG +T +D CG +G P+ L+A G K + +E D+ R + + Sbjct 192 LVGGDFTP-IDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDSDRYI-VFKNK 249 Query 235 EHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLD 294 + I W +R + +Y Q+ F + + DT + P F + S I+ I P + Sbjct 250 LYRIVWNVQRKDVAYSKQSAFTMNSIVQLDTME-DVPRHSFTIGSEIQVIAPSTAVQANG 308 Query 295 GFMGRIR---SVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTK 351 + R + Y + +E N + S + C CG+ SW TG+ V+ CG Sbjct 309 HLNLKQRLLYAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVQGFACDCGAHYCAN 368 Query 352 E-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT--IAFGG 408 + + G + +NAV+ CP + E +H+L + + K + G+T + +GG Sbjct 369 DVDLQSSGLVRKNAVLLTTCPCNKDGEC--KHTLPQLVSMMTDKCDVEVVGKTFILTYGG 426 Query 409 CVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIV 464 +++Y+GC +++PRA + + + G G + E L++ + IN V Sbjct 427 VIYAYMGCSGGTMHFIPRAKSCVSKI-GDAIFTGCTGTWSKVCETANLFLERAQHAINFV 485 Query 465 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIG 524 +F L E + +L+ ++S + + ++ + + G + VT G +G N+G Sbjct 486 NEFVLTETVVALLSGTTSSIEELRDLCRNATFEKVRDYLTPRG-WIVTMGSYIEGVINVG 544 Query 525 EQKSILSPLYA-----------FASEAARVVR--SIFSRTLETAQNSVRVLQKAAITILD 571 + L A F AA + S TL+ +S+ + I Sbjct 545 AAGVCNAALNAPFIVLSGLGESFKKVAATPWKLCSSLRETLDHYADSI-TYRVFPYDIPC 603 Query 572 GISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWL 631 ++ Y+ L+D + T + V Y+ V QLT+ +F + + + Sbjct 604 DVTDYTALLLDCAVLTGA---SAYFVARYVDEKVEQLTNL----VFSSCQSAVAAFVQAC 656 Query 632 EEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCAD 691 +K +F+ D + ++K +S V + ++ F +++K + L Sbjct 657 MSTYKATAKFISDMFTLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLLHT 716 Query 692 SIIIGGAKLKAL--NLGETFVTHSKGLYRKCVKSR---EETGLLMPLKAPKEIIFL---- 742 ++ G+KL ++ N ++ V S Y + R ++ L++P K+ I + Sbjct 717 TVSWAGSKLPSVVYNGRDSLVFPSGTYYCVSTQGRSLQDQFDLVIPGDLSKKQIGILEPT 776 Query 743 -EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEK--Y 799 T+ ++ T V + G L+P ++ + E V VG V I+ + + + + + Sbjct 777 PNSTTVDKKINTNVVEVVVGQLEPTKEHSPELV----VGDYVIISNKIFVRSVEDSETVF 832 Query 800 CALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKC 857 L + + F LKGGAP K V FG + E+ +SV++ +++ +D +L + Sbjct 833 YPLCTDGKIVPTLFRLKGGAPPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSEL 892 Query 858 SAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLA 917 + +TVE V +F VV D VI+ L + G DL++++ Y+++ G+ + Sbjct 893 ATFTVEKDLPVKDFVDVVKDEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWS 952 Query 918 SHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEE 977 S M S P +E EEE D + E E ++ ED+ + A A+ P E+ + Sbjct 953 STMTFSVNPVEEVEEECDDDYVEDEYLSEEMLVEEDEN-----SWAAAVEAVIPMEDVQL 1007 Query 978 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 1037 D L + + D +E T VEV +E + V EV S + + Sbjct 1008 DTLVAEIDVSEPADDVAEQAST----EEVEVPSACVLEASQVANAAEVESCEAEVSSSIP 1063 Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 ++ NAA A + A ++ + Sbjct 1064 LH--------------EDA--NAA-----------KANDCAEGMPALDSTETVSKLSVDT 1096 Query 1098 KVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGAD 1157 VG + + + + + ++ P Sbjct 1097 PVGDVTQDDATSSNATVIS---------------EDVHTATHSKGLVAVP-------EVV 1134 Query 1158 PIHSLRVCVDTVRTN---VYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPF 1214 P +L V+ +R+ + K +V + ++V++ AE P + K Sbjct 1135 PEKALGTSVERMRSTSEWTVVETSLKQETAVIVKN-DSSAKPQRVKKPKAENPLKNFKHI 1193 Query 1215 ITESKPSVEQ--RKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVS 1272 + + ++ + + C+ +L I + S LV Sbjct 1194 VLNNDVTLVFGDAIAVARATEDCIL--------VNAANTHLKHGGGIAAAIDRASGGLVQ 1245 Query 1273 DIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEMLA---KALRKVPTD 1323 ++ P VGD + +G A VV P +A ++L KA K P Sbjct 1246 AESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPL- 1304 Query 1324 NYITTYPGQGLN--------GYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNL 1375 ++ G+ Y + T ++ + + + + L Sbjct 1305 -VVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGW 1363 Query 1376 REMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLI 1435 R ++ +A+ +C + A ++ + + + VD G ++Y Y+SK + +I Sbjct 1364 RGIIRNAKSFGFTCFICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDII 1422 Query 1436 NTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSK 1495 N + + MP+GYVTHGL+L +A + ++ + VP ++S D V N + + + Sbjct 1423 TAANAC-KGICAMPIGYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQ 1479 Query 1496 TPEEHFIETISLAGSYKDWSY-SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVI 1551 TPE+ FI T+ G Y W +G+ G+ + L D+++ Y N + Sbjct 1480 TPEQSFINTVIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIAL 1539 Query 1552 TFDNLKTLLSLR-----EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTK 1606 FD+L+ + + + + V T+D +N T V++ + TY Q G + G+D++ Sbjct 1540 PFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISD 1599 Query 1607 IKPHNSHEGKTFYVLPNDD-TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLT 1665 P G+ Y+ N + E Y T D +FL RY S L KKWKY +G+ Sbjct 1600 TIPTEKMSGEAVYLADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVK 1659 Query 1666 SIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGE 1724 S+K NNCY+ +L L + E+KF PALQ AY + + G++ F ALI+AY + T GE Sbjct 1660 SLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGE 1719 Query 1725 LGDVRETMSYLFQHANLDS-CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGV 1783 D + + A L + K V C CG Q TT G++A +Y+G S ++ Sbjct 1720 PDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATH 1779 Query 1784 QIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTG-------NYQCGHY 1836 + C CG + LV+ +P++++S + + + +YT GHY Sbjct 1780 EECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHY 1839 Query 1837 KHITSKETL-YCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPK 1895 H+ K+ L Y D L+K+S+ K +TDV+Y + Y+ V Y LDG ++DP Sbjct 1840 LHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPD 1899 Query 1896 LDNYYKKDNSYFTEQP-IDLVPNQPYPNASFDNFKFVCDN-----IKFADDLNQLTGYK- 1948 L +Y KD YFT++P I+ P + + N V + + N L G+ Sbjct 1900 LSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDN 1959 Query 1949 -KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNT 2007 KP S++L +FFPD GDV+ +Y Y P +K GA L KPI+W N+ + A K N Sbjct 1960 SKPVSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNR 2019 Query 2008 WCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC-EDLKPVSE-EVVENPTIQKDVLECN 2065 +R ++ PV N + VL+ Q ++ A ED KP S +V E+ + +++C Sbjct 2020 ATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCK 2079 Query 2066 VKTTEVVGD-IILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLA 2123 V D + + + +G DL A YVD N L + K N S + + T+ Sbjct 2080 GLKKPFVKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVE 2139 Query 2124 THGLAAVNSVPWDT----IANYAKPFLNKVVSTTTNIVT---RCLNRVCTNYMP------ 2170 L+ + + T I A + S T N+ T + L R+ N + Sbjct 2140 KGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIG 2199 Query 2171 YFFTLLLQL----CTFTRSTN-SRIKASMPTTIAKNTVKS-VGKFCLEASFNYLKSPNFS 2224 F LL L TF +S N S +K + V + V K C A+++ L F Sbjct 2200 QGFALLKMLLILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVL-VVKFK 2258 Query 2225 KLINIIIWFLLLSVC------------------LGSLIYSTAALGVLM------SNLGMP 2260 ++ LL +C L S + A G+L S LG+ Sbjct 2259 RIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIH 2318 Query 2261 SYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLT 2319 S C G E Y N + + +C+ S C+ CL G DSL Y + + IQ ++S+ ++ Sbjct 2319 SLCDGMVEAYRN-VSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINID 2377 Query 2320 AFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPI 2377 V E+ LAY+L+T F VL L Q FFSY V++ S ++L+ V P+ Sbjct 2378 WVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPL 2437 Query 2378 SAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVY 2437 +VR+Y F A +++ + Y HV++GC + C++CYKRNR TRVE +T+V G +R+FY+ Sbjct 2438 LGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIV 2497 Query 2438 ANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVK 2497 ANGG FC HNWNCV+CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK Sbjct 2498 ANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVK 2557 Query 2498 NGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPINVIVFDGKSKCEESS 2553 + + L++ + G YER+ L +F NLD L+ G N +++D + +E+ Sbjct 2558 DSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENL 2617 Query 2554 AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLV 2613 A+SA VYYSQ++ +P+LL+D +V+ VGDS E+A KM D+YVN+F S F V +KL LV Sbjct 2618 ARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLV 2677 Query 2614 ATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNN 2672 ATA + + V+ TF AAR V+SDVET +V+ L+ +++ D+++T + NN Sbjct 2678 ATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNN 2737 Query 2673 YMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSA 2732 Y+ +Y K +++ DLG ID +A +N ++ N A IWN D+M LS+ L++QIR A Sbjct 2738 YVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIA 2797 Query 2733 AKKNNLPFKLTCATTRQVVNVVTTKIAL-KGGKIVNNWL--------KQLIKVTLVFLFV 2783 +K N+PF+LT + R N+++ K + K WL K VTLV + Sbjct 2798 CRKCNIPFRLTTSRLRSADNILSVKFSATKLSGGAPKWLLKLRDFTWKSYCVVTLVVFAM 2857 Query 2784 AAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQR-G 2842 A + YL P MS+ + I+ YK ++ G+ RDI +DTCFANK+ F WF++ G Sbjct 2858 AVLSYLCLPAFNMSQVSFHEDRILTYKVVENGIIRDITPSDTCFANKYQSFSKWFNEHYG 2917 Query 2843 GSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKL 2902 G + ND +CP+ AVI G VP LP + + F+ RVF++ N+CYTP+ Sbjct 2918 GLFNNDISCPVTVAVIAGVAGARVPNLPANVAWV-GRQIVLFVSRVFASSNNVCYTPTAE 2976 Query 2903 IEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-I 2961 I Y F+ S CVLA+ECT+F+DA GK PYCYD VL G+ AY+ ++P RY + D Sbjct 2977 IPYERFSDSGCVLASECTLFRDAEGKINPYCYDPTVLPGASAYDQMKPHVRYDMYDSDMY 3036 Query 2962 IQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGV 3021 I+FP E ++R+ T + YCR G+CE + GVC++T+G W + ND+Y + PGV+CG Sbjct 3037 IKFPEVVFESTLRITKTLATRYCRFGSCEDANEGVCITTNGSWAIYNDHYANKPGVYCGD 3096 Query 3022 DAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFN 3081 + +++ + L QP+ +S S+ G ++ I +T YY + +RA +Y+ Sbjct 3097 NYFDIVRRLGLSLFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVA 3156 Query 3082 TLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT 3141 L++ LC L Y+ +Y Y TFYLT + +F+ H+ W VMF +VP W+ Sbjct 3157 VAAALLNSLCLCFVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMV 3216 Query 3142 IAYIICISTKHFYWFFSNYLKRRV--VFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLL 3199 AYI+ + +H W + + K+ V +G +F++AA F++NK+ Y+ LR+ + Sbjct 3217 FAYIVGVCLRHLLWVMAYFSKKHVEVFTDGKLNCSFQDAAANIFVINKDTYVALRNSI-- 3274 Query 3200 PLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITS 3259 YNRYL+++NKYKY+SGAMDT SYREA+ HL KAL +S +GSDVL+QPP S+TS Sbjct 3275 TQDSYNRYLSMFNKYKYYSGAMDTASYREASAAHLCKALQVYSETGSDVLFQPPNCSVTS 3334 Query 3260 AVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYED 3319 +VLQSG KMA PSG VE CMVQVTCG+ TLNGLWLD+ V+CPRHV+C ++ + +PNY+ Sbjct 3335 SVLQSGLVKMAAPSGVVENCMVQVTCGSMTLNGLWLDNYVWCPRHVMCPADQLSDPNYDA 3394 Query 3320 LLIRKSNHNFLVQAG---NVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFS 3376 LL+ K+N +F+VQ LRV+GH+M +LKL V++ANP+TP Y F ++PG +FS Sbjct 3395 LLVSKTNLSFIVQKNVGAPANLRVVGHTMVGTLLKLTVESANPQTPAYTFTTVKPGASFS 3454 Query 3377 VLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHA 3436 VLACYNG P+GV+ MR N TIKGSFL GSCGSVG+ + + ++FCYMH MEL G H Sbjct 3455 VLACYNGRPTGVFMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHT 3514 Query 3437 GTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLV 3496 G +G YG F DRQ Q +D T+N++AWLYAA++NG WF+ T + FN Sbjct 3515 GCAFDGVMYGAFEDRQVHQVQLSDKYCTINIVAWLYAAILNGCNWFVKPNKTGIATFNEW 3574 Query 3497 AMKYNYE-PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFT 3555 AM + + VD+ L+ +TG++V + +++ L G G+TILG+++LEDEFT Sbjct 3575 AMSNQFTEFIGTQSVDM---LAHKTGVSVEQLLYAIQTL-HKGFQGKTILGNSMLEDEFT 3630 Query 3556 PFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFA 3615 P DV Q GV QS VKR G HWL T+L + + +Q T+++++ +L+E L Sbjct 3631 PDDVNMQVMGVVMQSGVKRISYGLVHWLFTTLLLAYVATLQLTKFTIWNYLFEVIPLQLT 3690 Query 3616 MGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLDMVD 3671 ++ + A M+ VKHKH FL LFLLP+ + Y N+VY P +S ++ + WL+ Sbjct 3691 PLVLCVMACVMLTVKHKHTFLTLFLLPTAICLTYANIVYEPQTPVSSALIAVANWLNPAS 3750 Query 3672 TSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAI 3731 + D +Y S L ++ R + + L + + Y G+ + Sbjct 3751 VYMRTTH-TDLGVYLSLCFALAVVVRRLYRPNASNLALALGSAMVWFYTYTTGDC-SSPL 3808 Query 3732 SMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCT 3791 + + ++TS+Y+ V + +A+ + Y P ++ ++L+Y +GYFCT Sbjct 3809 TYLMFLTTLTSDYTVTVFLAVNVAKFFARVVFLYAPHAGFIFPEVKLVLLMYLAVGYFCT 3868 Query 3792 CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKP 3851 YFG+F LLN R+ LGVYDY VSTQEFRY+ GL P+NS +A +LN+KL+G+GG P Sbjct 3869 VYFGVFSLLNLKLRVPLGVYDYTVSTQEFRYLTGNGLHAPRNSWEALRLNMKLIGIGGTP 3928 Query 3852 CIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKM 3911 CIK+A+VQSK++D+KCTSVVLLSVLQQL +E++SK WA CV+LHNDIL A D TEAF+ Sbjct 3929 CIKIASVQSKLTDLKCTSVVLLSVLQQLHLEANSKAWAHCVKLHNDILAATDPTEAFDNF 3988 Query 3912 VSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANG 3971 V L + L+S VD+ L ++LD+ + LQA SEFS L SYA AQ +Y++A+ +G Sbjct 3989 VCLFATLMSFSANVDLEALASDLLDHPSVLQATLSEFSHLASYAELEAAQSSYQKALNSG 4048 Query 3972 D-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQ 4030 D S VLK L+K++N+AK+ +++D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQ Sbjct 4049 DASPQVLKALQKAVNIAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQ 4108 Query 4031 TMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFT 4090 TMLF M++KLDND LN +I+NAR+GCVPL+++PL + KL VVIPD + + + Sbjct 4109 TMLFGMIKKLDNDVLNGVISNARNGCVPLSVVPLCASNKLRVVIPDITIWNKVVTWPSLS 4168 Query 4091 YASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR-ANSAVKLQNNELSPVAL 4149 YA ALW+I + + D ++V+ S+++ + + +L WPL++ R A+SAV LQNNE+ P L Sbjct 4169 YAGALWDISLINNVDGEVVKSSDVT-ETNESLTWPLVLECTRAASSAVTLQNNEIRPSGL 4227 Query 4150 RQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTEL 4209 + M +AG C + ++LAYY +G + ++ +LS+ LKWA+ DG + EL Sbjct 4228 KTMVVSAGIDHANC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRDG--FVNIEL 4284 Query 4210 EPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSF 4269 +PPC+F+ PKGP+V+YLYF+K LNNL+RG +LG +AATVRLQAG+ TE NS+VLS Sbjct 4285 QPPCKFLIAGPKGPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQAGSNTEFAINSSVLSA 4344 Query 4270 CAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLY 4329 F+VD KAY D++ +GG P+TNCVKML TGTG A++V PEAN DQ+++GGAS CLY Sbjct 4345 VTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPEANADQDTYGGASVCLY 4404 Query 4330 CRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREP 4389 CR HI+HP+ G C KGK+VQ+P DPVGF L+NT C VC W G+GC+CD LR Sbjct 4405 CRAHIEHPDVTGVCKFKGKFVQVPLH-IRDPVGFCLQNTPCNVCQFWIGHGCNCDALRGT 4463 Query 4390 MLQSADAQSFLNGFAV 4405 + + +FLN V Sbjct 4464 TIPQSKDSNFLNESGV 4479 >sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 4660 bits (12088), Expect = 0.0, Method: Composition-based stats. Identities = 1495/4572 (33%), Positives = 2331/4572 (51%), Gaps = 297/4572 (6%) Query 9 NEKT--HVQLSLPVLQVRDVLV---RGFGDSVEEVLSEARQHLKDGTCGLV--EVEKGVL 61 EK HV L + D+++ F D E + L G+ L + KG + Sbjct 22 TEKRTDHVSLKASLCDAGDLVLKISPWFMDG-ESAYKHVSEQLSKGSKLLFVPQTLKGFI 80 Query 62 PQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETL-----GVLVPHVGEIPV 116 L P V++ MV +A G G TL G+ P ++ Sbjct 81 RHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQGKRVGMFFPFDADLVT 140 Query 117 AYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRE 176 + LLRK KG GG+ + D + PY D + ++ L+++ Sbjct 141 GEFQFLLRK---KGFGGNRFR------DAPWDYNWTPYSDLMDALEADPCGKYSQSLLKK 191 Query 177 LNGGAYTRYVDNNFCGPDGYPLECIKDLLARAG--KASCTLSEQLDFIDTKRGVYCCREH 234 L GG +T +D CG +G P+ L+A G K + +E D+ R + + Sbjct 192 LVGGDFTP-IDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDSDRYI-VFKNK 249 Query 235 EHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLD 294 + I W +R + +Y Q+ F + + DT + P F + S I+ I P + Sbjct 250 LYRIVWNVQRKDVAYSKQSAFTMNSIVQLDTME-DVPRHSFTIGSEIQVIAPSTAVQANG 308 Query 295 GFMGRIR---SVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTK 351 + R + Y + +E N + S + C CG+ SW TG+ V+ CG Sbjct 309 HLNLKQRLLYAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVQGFACDCGAHYCAN 368 Query 352 E-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRT--IAFGG 408 + + G + +NAV+ CP + E +H+L + + K + G+T + +GG Sbjct 369 DVDLQSSGLVRKNAVLLTTCPCNKDGEC--KHTLPQLVSMMTDKCDVEVVGKTFILTYGG 426 Query 409 CVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIV 464 +++Y+GC +++PRA + + + G G + E L++ + IN V Sbjct 427 VIYAYMGCSGGTMHFIPRAKSCVSKI-GDAIFTGCTGTWSKVCETANLFLERAQHAINFV 485 Query 465 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIG 524 +F L E + +L+ ++S + + ++ + + G + VT G +G N+G Sbjct 486 NEFVLTETVVALLSGTTSSIEELRDLCRNATFEKVRDYLTPRG-WIVTMGSYIEGVINVG 544 Query 525 EQKSILSPLYA-----------FASEAARVVR--SIFSRTLETAQNSVRVLQKAAITILD 571 + L A F AA + S TL+ +S+ + I Sbjct 545 AAGVCNAALNAPFIVLSGLGESFKKVAATPWKLCSSLRETLDHYADSI-TYRVFPYDIPC 603 Query 572 GISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWL 631 ++ Y+ L+D + T + V Y+ V QLT+ +F + + + Sbjct 604 DVTDYTALLLDCAVLTGA---SAYFVARYVDEKVEQLTNL----VFSSCQSAVAAFVQAC 656 Query 632 EEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCAD 691 +K +F+ D + ++K +S V + ++ F +++K + L Sbjct 657 MSTYKATAKFISDMFTLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLLHT 716 Query 692 SIIIGGAKLKAL--NLGETFVTHSKGLYRKCVKSR---EETGLLMPLKAPKEIIFL---- 742 ++ G+KL ++ N ++ V S Y + R ++ L++P K+ I + Sbjct 717 TVSWAGSKLPSVVYNGRDSLVFPSGTYYCVSTQGRSLQDQFDLVIPGDLSKKQIGILEPT 776 Query 743 -EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEK--Y 799 T+ ++ T V + G L+P ++ + E V VG V I+ + + + + + Sbjct 777 PNSTTVDKKINTNVVEVVVGQLEPTKEHSPELV----VGDYVIISNKIFVRSVEDSETVF 832 Query 800 CALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKC 857 L + + F LKGGAP K V FG + E+ +SV++ +++ +D +L + Sbjct 833 YPLCTDGKIVPTLFRLKGGAPPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSEL 892 Query 858 SAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLA 917 + +TVE V +F VV D VI+ L + G DL++++ Y+++ G+ + Sbjct 893 ATFTVEKDLPVKDFVDVVKDEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWS 952 Query 918 SHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEE 977 S M S P +E EEE D + E E ++ ED+ + A A+ P E+ + Sbjct 953 STMTFSVNPVEEVEEECDDDYVEDEYLSEEMLVEEDEN-----SWAAAVEAVIPMEDVQL 1007 Query 978 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 1037 D L + + D +E T VEV +E + V EV S + + Sbjct 1008 DTLVAEIDVSEPADDVAEQAST----EEVEVPSACVLEASQVANAAEVESCEAEVSSSIP 1063 Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 ++ NAA A + A ++ + Sbjct 1064 LH--------------EDA--NAA-----------KANDCAEGMPALDSTETVSKLSVDT 1096 Query 1098 KVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGAD 1157 VG + + + + + ++ P Sbjct 1097 PVGDVTQDDATSSNATVIS---------------EDVHTATHSKGLVAVP-------EVV 1134 Query 1158 PIHSLRVCVDTVRTN---VYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPF 1214 P +L V+ +R+ + K +V + ++V++ AE P + K Sbjct 1135 PEKALGTSVERMRSTSEWTVVETSLKQETAVIVKN-DSSAKPQRVKKPKAENPLKNFKHI 1193 Query 1215 ITESKPSVEQ--RKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVS 1272 + + ++ + + C+ +L I + S LV Sbjct 1194 VLNNDVTLVFGDAIAVARATEDCIL--------VNAANTHLKHGGGIAAAIDRASGGLVQ 1245 Query 1273 DIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEMLA---KALRKVPTD 1323 ++ P VGD + +G A VV P +A ++L KA K P Sbjct 1246 AESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPL- 1304 Query 1324 NYITTYPGQGLN--------GYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNL 1375 ++ G+ Y + T ++ + + + + L Sbjct 1305 -VVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGW 1363 Query 1376 REMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLI 1435 R ++ +A+ +C + A ++ + + + VD G ++Y Y+SK + +I Sbjct 1364 RGIIRNAKSFGFTCFICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDII 1422 Query 1436 NTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSK 1495 N + + MP+GYVTHGL+L +A + ++ + VP ++S D V N + + + Sbjct 1423 TAANAC-KGICAMPIGYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQ 1479 Query 1496 TPEEHFIETISLAGSYKDWSY-SGQSTQLGI---EFLKRGDKSVYYTSNPTTFHLDGEVI 1551 TPE+ FI T+ G Y W +G+ G+ + L D+++ Y N + Sbjct 1480 TPEQSFINTVIANGGYHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNKFYVVKGQIAL 1539 Query 1552 TFDNLKTLLSLR-----EVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTK 1606 FD+L+ + + + + V T+D +N T V++ + TY Q G + G+D++ Sbjct 1540 PFDSLEKCRTYLTSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISD 1599 Query 1607 IKPHNSHEGKTFYVLPNDD-TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLT 1665 P G+ Y+ N + E Y T D +FL RY S L KKWKY +G+ Sbjct 1600 TIPTEKMSGEAVYLADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVK 1659 Query 1666 SIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGE 1724 S+K NNCY+ +L L + E+KF PALQ AY + + G++ F ALI+AY + T GE Sbjct 1660 SLKLNSNNCYVNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGE 1719 Query 1725 LGDVRETMSYLFQHANLDS-CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGV 1783 D + + A L + K V C CG Q TT G++A +Y+G S ++ Sbjct 1720 PDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATH 1779 Query 1784 QIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTG-------NYQCGHY 1836 + C CG + LV+ +P++++S + + + +YT GHY Sbjct 1780 EECCQCGDVRKRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHY 1839 Query 1837 KHITSKETL-YCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPK 1895 H+ K+ L Y D L+K+S+ K +TDV+Y + Y+ V Y LDG ++DP Sbjct 1840 LHVRVKDNLLYKYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPD 1899 Query 1896 LDNYYKKDNSYFTEQP-IDLVPNQPYPNASFDNFKFVCDN-----IKFADDLNQLTGYK- 1948 L +Y KD YFT++P I+ P + + N V + + N L G+ Sbjct 1900 LSAFYMKDGKYFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDN 1959 Query 1949 -KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNT 2007 KP S++L +FFPD GDV+ +Y Y P +K GA L KPI+W N+ + A K N Sbjct 1960 SKPVSKKLTYSFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNR 2019 Query 2008 WCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLAC-EDLKPVSE-EVVENPTIQKDVLECN 2065 +R ++ PV N + VL+ Q ++ A ED KP S +V E+ + +++C Sbjct 2020 ATLRQVYDIAPVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCK 2079 Query 2066 VKTTEVVGD-IILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSRVLGLKTLA 2123 V D + + + +G DL A YVD N L + K N S + + T+ Sbjct 2080 GLKKPFVKDGYSFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVE 2139 Query 2124 THGLAAVNSVPWDT----IANYAKPFLNKVVSTTTNIVT---RCLNRVCTNYMP------ 2170 L+ + + T I A + S T N+ T + L R+ N + Sbjct 2140 KGDLSVIAASGSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIG 2199 Query 2171 YFFTLLLQL----CTFTRSTN-SRIKASMPTTIAKNTVKS-VGKFCLEASFNYLKSPNFS 2224 F LL L TF +S N S +K + V + V K C A+++ L F Sbjct 2200 QGFALLKMLLILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVL-VVKFK 2258 Query 2225 KLINIIIWFLLLSVC------------------LGSLIYSTAALGVLM------SNLGMP 2260 ++ LL +C L S + A G+L S LG+ Sbjct 2259 RIDWKSTLRLLFLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIH 2318 Query 2261 SYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLT 2319 S C G E Y N + + +C+ S C+ CL G DSL Y + + IQ ++S+ ++ Sbjct 2319 SLCDGMVEAYRN-VSYDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINID 2377 Query 2320 AFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIINLVQMAPI 2377 V E+ LAY+L+T F VL L Q FFSY V++ S ++L+ V P+ Sbjct 2378 WVWFVMEFALAYVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPL 2437 Query 2378 SAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVY 2437 +VR+Y F A +++ + Y HV++GC + C++CYKRNR TRVE +T+V G +R+FY+ Sbjct 2438 LGLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIV 2497 Query 2438 ANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVK 2497 ANGG FC HNWNCV+CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK Sbjct 2498 ANGGTSFCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVK 2557 Query 2498 NGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPINVIVFDGKSKCEESS 2553 + + L++ + G YER+ L +F NLD L+ G N +++D + +E+ Sbjct 2558 DSVVQLHYSREGASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENL 2617 Query 2554 AKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLV 2613 A+SA VYYSQ++ +P+LL+D +V+ VGDS E+A KM D+YVN+F S F V +KL LV Sbjct 2618 ARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLV 2677 Query 2614 ATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNN 2672 ATA + + V+ TF AAR V+SDVET +V+ L+ +++ D+++T + NN Sbjct 2678 ATARDCVKRGDDFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNN 2737 Query 2673 YMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSA 2732 Y+ +Y K +++ DLG ID +A +N ++ N A IWN D+M LS+ L++QIR A Sbjct 2738 YVPSYIKPDSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIA 2797 Query 2733 AKKNNLPFKLTCATTRQVVNVVTTKIAL-KGGKIVNNWL--------KQLIKVTLVFLFV 2783 +K N+PF+LT + R N+++ K + K WL K VTLV + Sbjct 2798 CRKCNIPFRLTTSRLRSADNILSVKFSATKLSGGAPKWLLKLRDFTWKSYCVVTLVVFAM 2857 Query 2784 AAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQR-G 2842 A + YL P MS+ + I+ YK ++ G+ RDI +DTCFANK+ F WF++ G Sbjct 2858 AVLSYLCLPAFNMSQVSFHEDRILTYKVVENGIIRDITPSDTCFANKYQSFSKWFNEHYG 2917 Query 2843 GSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKL 2902 G + ND +CP+ AVI G VP LP + + F+ RVF++ N+CYTP+ Sbjct 2918 GLFNNDISCPVTVAVIAGVAGARVPNLPANVAWV-GRQIVLFVSRVFASSNNVCYTPTAE 2976 Query 2903 IEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-I 2961 I Y F+ S CVLA+ECT+F+DA GK PYCYD VL G+ AY+ ++P RY + D Sbjct 2977 IPYERFSDSGCVLASECTLFRDAEGKINPYCYDPTVLPGASAYDQMKPHVRYDMYDSDMY 3036 Query 2962 IQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGV 3021 I+FP E ++R+ T + YCR G+CE + GVC++T+G W + ND+Y + PGV+CG Sbjct 3037 IKFPEVVFESTLRITKTLATRYCRFGSCEDANEGVCITTNGSWAIYNDHYANKPGVYCGD 3096 Query 3022 DAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFN 3081 + +++ + L QP+ +S S+ G ++ I +T YY + +RA +Y+ Sbjct 3097 NYFDIVRRLGLSLFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVA 3156 Query 3082 TLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT 3141 L++ LC L Y+ +Y Y TFYLT + +F+ H+ W VMF +VP W+ Sbjct 3157 VAAALLNSLCLCFVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMV 3216 Query 3142 IAYIICISTKHFYWFFSNYLKRRV--VFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLL 3199 AYI+ + +H W + + K+ V +G +F++AA F++NK+ Y+ LR+ + Sbjct 3217 FAYIVGVCLRHLLWVMAYFSKKHVEVFTDGKLNCSFQDAAANIFVINKDTYVALRNSI-- 3274 Query 3200 PLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITS 3259 YNRYL+++NKYKY+SGAMDT SYREA+ HL KAL +S +GSDVL+QPP S+TS Sbjct 3275 TQDSYNRYLSMFNKYKYYSGAMDTASYREASAAHLCKALQVYSETGSDVLFQPPNCSVTS 3334 Query 3260 AVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYED 3319 +VLQSG KMA PSG VE CMVQVTCG+ TLNGLWLD+ V+CPRHV+C ++ + +PNY+ Sbjct 3335 SVLQSGLVKMAAPSGVVENCMVQVTCGSMTLNGLWLDNYVWCPRHVMCPADQLSDPNYDA 3394 Query 3320 LLIRKSNHNFLVQAG---NVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFS 3376 LL+ K+N +F+VQ LRV+GH+M +LKL V++ANP+TP Y F ++PG +FS Sbjct 3395 LLVSKTNLSFIVQKNVGAPANLRVVGHTMVGTLLKLTVESANPQTPAYTFTTVKPGASFS 3454 Query 3377 VLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHA 3436 VLACYNG P+GV+ MR N TIKGSFL GSCGSVG+ + + ++FCYMH MEL G H Sbjct 3455 VLACYNGRPTGVFMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHT 3514 Query 3437 GTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLV 3496 G +G YG F DRQ Q +D T+N++AWLYAA++NG WF+ T + FN Sbjct 3515 GCAFDGVMYGAFEDRQVHQVQLSDKYCTINIVAWLYAAILNGCNWFVKPNKTGIATFNEW 3574 Query 3497 AMKYNYE-PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFT 3555 AM + + VD+ L+ +TG++V + +++ L G G+TILG+++LEDEFT Sbjct 3575 AMSNQFTEFIGTQSVDM---LAHKTGVSVEQLLYAIQTL-HKGFQGKTILGNSMLEDEFT 3630 Query 3556 PFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFA 3615 P DV Q GV QS VKR G HWL T+L + + +Q T+++++ +L+E L Sbjct 3631 PDDVNMQVMGVVMQSGVKRISYGLVHWLFTTLLLAYVATLQLTKFTIWNYLFEVIPLQLT 3690 Query 3616 MGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLDMVD 3671 ++ + A M+ VKHKH FL LFLLP+ + Y N+VY P +S ++ + WL+ Sbjct 3691 PLVLCVMACVMLTVKHKHTFLTLFLLPTAICLTYANIVYEPQTPVSSALIAVANWLNPAS 3750 Query 3672 TSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAI 3731 + D +Y S L ++ R + + L + + Y G+ + Sbjct 3751 VYMRTTH-TDLGVYLSLCFALAVVVRRLYRPNASNLALALGSAMVWFYTYTTGDC-SSPL 3808 Query 3732 SMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCT 3791 + + ++TS+Y+ V + +A+ + Y P ++ ++L+Y +GYFCT Sbjct 3809 TYLMFLTTLTSDYTVTVFLAVNVAKFFARVVFLYAPHAGFIFPEVKLVLLMYLAVGYFCT 3868 Query 3792 CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKP 3851 YFG+F LLN R+ LGVYDY VSTQEFRY+ GL P+NS +A +LN+KL+G+GG P Sbjct 3869 VYFGVFSLLNLKLRVPLGVYDYTVSTQEFRYLTGNGLHAPRNSWEALRLNMKLIGIGGTP 3928 Query 3852 CIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKM 3911 CIK+A+VQSK++D+KCTSVVLLSVLQQL +E++SK WA CV+LHNDIL A D TEAF+ Sbjct 3929 CIKIASVQSKLTDLKCTSVVLLSVLQQLHLEANSKAWAHCVKLHNDILAATDPTEAFDNF 3988 Query 3912 VSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANG 3971 V L + L+S VD+ L ++LD+ + LQA SEFS L SYA AQ +Y++A+ +G Sbjct 3989 VCLFATLMSFSANVDLEALASDLLDHPSVLQATLSEFSHLASYAELEAAQSSYQKALNSG 4048 Query 3972 D-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQ 4030 D S VLK L+K++N+AK+ +++D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQ Sbjct 4049 DASPQVLKALQKAVNIAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQ 4108 Query 4031 TMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFT 4090 TMLF M++KLDND LN +I+NAR+GCVPL+++PL + KL VVIPD + + + Sbjct 4109 TMLFGMIKKLDNDVLNGVISNARNGCVPLSVVPLCASNKLRVVIPDITIWNKVVTWPSLS 4168 Query 4091 YASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR-ANSAVKLQNNELSPVAL 4149 YA ALW+I + + D ++V+ S+++ + + +L WPL++ R A+SAV LQNNE+ P L Sbjct 4169 YAGALWDISLINNVDGEVVKSSDVT-ETNESLTWPLVLECTRAASSAVTLQNNEIRPSGL 4227 Query 4150 RQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTEL 4209 + M +AG C + ++LAYY +G + ++ +LS+ LKWA+ DG + EL Sbjct 4228 KTMVVSAGIDHANC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRDG--FVNIEL 4284 Query 4210 EPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSF 4269 +PPC+F+ PKGP+V+YLYF+K LNNL+RG +LG +AATVRLQAG+ TE NS+VLS Sbjct 4285 QPPCKFLIAGPKGPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQAGSNTEFAINSSVLSA 4344 Query 4270 CAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLY 4329 F+VD KAY D++ +GG P+TNCVKML TGTG A++V PEAN DQ+++GGAS CLY Sbjct 4345 VTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPEANADQDTYGGASVCLY 4404 Query 4330 CRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREP 4389 CR HI+HP+ G C KGK+VQ+P DPVGF L+NT C VC W G+GC+CD LR Sbjct 4405 CRAHIEHPDVTGVCKFKGKFVQVPLH-IRDPVGFCLQNTPCNVCQFWIGHGCNCDALRGT 4463 Query 4390 MLQSADAQSFLN 4401 + + +FLN Sbjct 4464 TIPQSKDSNFLN 4475 >sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus HKU9 OX=694006 GN=1a PE=3 SV=1 Length=4248 Score = 4355 bits (11296), Expect = 0.0, Method: Composition-based stats. Identities = 1585/4471 (35%), Positives = 2372/4471 (53%), Gaps = 347/4471 (8%) Query 28 VRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV--LPQLEQPYVFIKRSDARTAPHG-HV 84 V G+ +EE L A+Q L+ LV V + P + V I S G Sbjct 29 VTGWDIPIEEALEYAKQQLRTPEPQLVFVPYYLSHAPGISGDRVVITDSIWYATNFGWQP 88 Query 85 MVELVAELEGIQYGRSGETLGVLVPH------VGEIPVAYRKVLLRKNGNKGAGGHSYGA 138 + EL + +G++YGR G T GVL+P +G+I + RK G G +S Sbjct 89 IRELAMDKDGVRYGRGG-THGVLLPMQDPSFIMGDIDIQIRKY--------GIGANSPPD 139 Query 139 DLKSFDLGDELGTD--PYEDFQENW-NTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 L +D + G D PY DF +N TK + ++ D +G Sbjct 140 VLPLWDGFSDPGPDVGPYLDFPDNCCPTKPKAKRGGDVYLS----------DQYGFDNNG 189 Query 196 YPLECIKDLLARAGKASCTLSEQLDFIDTKR--GVYCCREHEHEIAWYTERSEKSYELQT 253 +E + LL K+ TL + L + R Y + ++A R Q+ Sbjct 190 ILVEPVMKLLGVI-KSDFTLEQLLAALGKYRTEDGYDLPDGYVKVAIKVGRKAVPVLKQS 248 Query 254 PFEIKLAKKFDTFNGECPNFVFPLN--SIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNE 311 F + P + +P + S+++ +P + S+Y N Sbjct 249 IFTV-----VGVTEQLVPGYYYPFSTSSVVEHTKPTRGGPVGKTVEAVMLSLY---GTNN 300 Query 312 CNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCP 371 N +KC +C W + CG E + ++C V+K P Sbjct 301 YNPATPVARLKCSYCDYYGWTPLKDIGTVNCLCGAEF---QLTSSCVDAESAGVIK---P 354 Query 372 ACHNSEVGPEHSLAEYHNESGLKTILRKGGRT-IAFGGCVFSYVGCHNKCAYWVPRASAN 430 C + G++ I G RT ++FGG ++S +G N WVPRA + Sbjct 355 GC----------VMLLDKSPGMRLI--PGNRTYVSFGGAIWSPIGKVNGVTVWVPRAYSI 402 Query 431 IGCNHTGVVGEG-SEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSA--- 486 + H+G VG G + +N L+E L + I + D N A +A+ T A Sbjct 403 VAGEHSGAVGSGDTVAINKELVEYLIE---GIRVDADTLDNPTCATFIANLDCDTKAPVV 459 Query 487 -FVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVR 545 VE+++GL C K+ G E + L A+ + A Sbjct 460 HTVESLQGL-----------CLANKIMLGDKP---LPTDEFHPFIVGL-AYHVQRACWYG 504 Query 546 SIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGV 605 ++ SRT E ++ VR ++ +Q+ ++ + N V +AY TG V Sbjct 505 ALASRTFEAFRDFVRTEEER-------FAQFFGKVCAPI--------NGCVYLAYTTGRV 549 Query 606 VQLTSQWLTN------------IFGTVYEKLKPVLDWLEEKFKEGVEFLRDGW----EIV 649 ++ + N + V + LKP+L+W+ +K + + W E + Sbjct 550 TLFSAYQVLNTAIAKSKDAFGGVAAIVVDMLKPILEWVLKK----MSIAKGAWLPYAEGL 605 Query 650 KFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETF 709 + +V G+ + + L+ ++ S+ G K+ AL G + Sbjct 606 LALFKAQFTVVKGKFQFLRASLNSKCHSLCDLLTTIMSKLLTSVKWAGCKVDALYTGTYY 665 Query 710 VTHSKGLYRKCVKSREETGLLM-PLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQ 768 KG+ + + GLL+ P + E+ L+G+ LT+ L+ + + + Sbjct 666 YFSRKGVLTEVQLCAKRLGLLLTPKQQKMEVEVLDGDFDAPVTLTD---LELEECTGVLE 722 Query 769 PTSEAVEAPLV-GTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGD 827 A + LV GT V + + + +D Y + V F L+GG +KVTFGD Sbjct 723 EVFGASDVKLVKGTLVSLASKLFVRTEDGFLY-RYVKSGGVLGKAFRLRGGGVSKVTFGD 781 Query 828 DTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQP-- 885 + V + +VN ++++ E +D +L++ + + VE GT++ + ACVV AV + L Sbjct 782 EEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAVYERLSDLF 841 Query 886 --VSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP--PDEDEEEGDCEEEEF 941 L P I+L+++ + +++ + E L MY S P +DE D E+ Sbjct 842 SDCPAELRP--INLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDDEMVDDIED--- 896 Query 942 EPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTT 1001 ++ + ++ WL D+ G+ED Sbjct 897 --------------------------TVEQASDSDDQWLGDE---------GAEDCD--- 918 Query 1002 IQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAA 1061 TI +V M GY K+ ++VYIK ADIV+EA+ V+VNAA Sbjct 919 -NTIQDVDVATSMTTP-----------CGYTKIAEHVYIKCADIVQEARNYSYAVLVNAA 966 Query 1062 NVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH-CLHVVGP 1120 NV L HGGGVAGALN+ATNNAMQ ES +YI NG L+ GG +LS H LA H LHVVGP Sbjct 967 NVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGHVLLSSHGLASHGILHVVGP 1026 Query 1121 NVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDK 1180 + G+D+ LL + Y + + +L PL+SAGIFG SL V V Y+ V+D+ Sbjct 1027 DKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLVKNVACTTYVVVYDR 1086 Query 1181 NLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVT 1240 LY++ +++ ++ + Q + I E + + V+Q + V+ Sbjct 1087 QLYERALATSFDVPGPQSSVQHVPAIDWAEA---VEVQESIVDQVETPSLGAVDTVDSNA 1143 Query 1241 TT-LEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAV 1299 + L ET EN++ + PD +V DV + V Sbjct 1144 DSGLNETARSPENVVGSV-------PDD------------------VVADV-----ESCV 1173 Query 1300 VIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSI 1359 +++ + ++KV D Q TVE+ + +L Sbjct 1174 ----------RDLVRQVVKKVKRDKRPPPIVPQ----QTVEQQPQEISSPGDCNTVL--- 1216 Query 1360 ISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY- 1418 + VS + M+ +E L+PV ++ A + ++R +EG+ Sbjct 1217 --------VDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFSSN 1264 Query 1419 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS 1478 G FY Y+ + + LN L L+ +P G++ +G L +A MR L VP TV V Sbjct 1265 GYEFYGYSRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVVP 1324 Query 1479 SPDAVTAYNGYLT---SSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIE----FLKRG 1531 S +V Y Y S T + F+ I L G+ +DW + + + KRG Sbjct 1325 SESSVPLYRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDVLQTTCTVDRKVYKTICKRG 1383 Query 1532 DKSVYYTSNPTTFHLDGE-VITFDNLKTLLSLREVR------TIKVFTTVDNINLHTQVV 1584 + + + + + + G+ V+ F + + E + IKV TTVD IN T +V Sbjct 1384 NTYLCF-DDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLV 1442 Query 1585 DMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFL 1643 + +Y Q G + DG D + P + EG Y N + V A EYY D + + Sbjct 1443 STAQSYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNII 1502 Query 1644 GRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRAR 1703 R MS + W Y V+G + D+NCYL A+ LQ I++ F+ P + AY + Sbjct 1503 ARAMSIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVCRAYDALK 1562 Query 1704 AGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLK 1763 G +++A T G D +S + H + + +RV+ VC+ CG Q Sbjct 1563 GGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCGVSQMVFT 1621 Query 1764 GVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYEL-KHGTFT 1822 G +A + G++ + V + C CG+ A +Y+ +Q+SP+++MS P Q L G + Sbjct 1622 GTDACTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPLDTSGIWK 1681 Query 1823 CASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTY 1882 A + G GHY + + + D ++S+ K P TD+ Y S+T+ K TY Sbjct 1682 TAIVFRGPVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTSDSKVETY 1741 Query 1883 KLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKF-VCDNIKFADDL 1941 LDGV T IDP Y K+ + YFT PI++V P S+D F C N + A+ Sbjct 1742 YLDGVKRTTIDPDFSKYVKRGDYYFTTAPIEVV-AAPKLVTSYDGFYLSSCQNPQLAESF 1800 Query 1942 NQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKA 2001 N+ K +L +T +P++ GDVVAI + + G+ + KP+++ Sbjct 1801 NKAINATKTGPMKL-LTMYPNVAGDVVAISDDNVV-AHPYGSLHMGKPVLF--------- 1849 Query 2002 TYKPNTW-CIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENP-TIQK 2059 +PNTW + L ST V T N++DVL D PV+ E E P +++ Sbjct 1850 VTRPNTWKKLVPLLSTVVVNTPNTYDVLAV------------DPLPVNNETSEEPISVKA 1897 Query 2060 DVLECNVKTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVDN-SSLTIKKPNELSRVL 2117 + +K T V+ P N L +E TDL YV+ + K + LS+VL Sbjct 1898 PIPLYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKASHLSKVL 1957 Query 2118 GLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT--NIVTRCLNRV----------- 2164 GL+ + VN + + YA L V+T+ +VTR + + Sbjct 1958 GLRV--SDSSLHVNHLSKGVVYAYAATRLTTRVTTSLLGGLVTRSVRKTADFVRSTNPGS 2015 Query 2165 -CTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNF 2223 C + F+ L ++ + + IA NT V L + + ++ Sbjct 2016 KCVGLLCLFYQLFMRFWLLVKKPPI---VKVSGIIAYNTGCGVTTCVLNYLRSRCGNISW 2072 Query 2224 SKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYRE--GYLNSTNVTIATY 2281 S+L+ ++ + L + L GV +S PS T ++ G + + + Sbjct 2073 SRLLKLLRYMLYIWFVWTCLT----ICGVWLSEPYAPSLVTRFKYFLGIVMPCDYVLVNE 2128 Query 2282 CTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 +C++G+DSLD YP+L Q S ++ T ++ E F AY+L+T ++ Sbjct 2129 TGTGWLHHLCMAGMDSLD-YPALRMQQHRYGSP-YNYTYILMLLEAFFAYLLYTPALPIV 2186 Query 2342 GLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVV 2401 G+ A++ L Y + + NSWL+ + ++++ P ++M+RMYI A + +K ++HV Sbjct 2187 GILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGFLHVR 2245 Query 2402 DGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAG 2461 GCN+ C+MCYK+N A R+EC+T+VNGV+R FYV ANGG FC HNWNCV+CDT+ Sbjct 2246 YGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDTYTVD 2305 Query 2462 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHF 2521 STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ++YER + F Sbjct 2306 STFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYERFPMDAF 2365 Query 2522 VNLDNLRANNTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 N+ L + KG+ P NV+VFD ++ EE++ K+A++YY+QL C+PILL+D+ +V V Sbjct 2366 TNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRMVGVV 2425 Query 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG 2640 GD A +A MF+AY + +++ M+K+K L +TA +++ +++++VL F+ + R Sbjct 2426 GDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVFVGSTRAE 2485 Query 2641 FVD--SDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 D SDV+T D+V C++L HQ E T DS NN + TY K + ++ ++G + +A++ Sbjct 2486 AKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQFMTANAKY 2545 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 +NA +AK + LIW DF+ LSE +R+Q++ AA+K L +T ++ + V + T Sbjct 2546 VNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKADVPCMVTPF 2605 Query 2759 ALKGG-KIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVT 2817 + GG + + +W + LI V ++ + + ++ TP ++M ++ +K ID V Sbjct 2606 KIIGGHRRIVSWRRVLIHVFMLLVVLNPQWF--TPWYIMRP---IEYNVVDFKVIDNAVI 2660 Query 2818 RDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTT 2877 RDI S D CFANK + F+ W+S R GSY N + CP++ V++ VG +VPGLP LR Sbjct 2661 RDITSADQCFANKFSAFENWYSNRYGSYVNSRGCPMVVGVVSDIVGSLVPGLPARFLRVG 2720 Query 2878 NGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTN 2937 L + AVG++CYTP I Y F TSACVLAA CT+F ASG+ +PYC D Sbjct 2721 T-TLLPLVNYGLGAVGSVCYTPHYAINYDVFDTSACVLAATCTLFSSASGERMPYCADAA 2779 Query 2938 VLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGV 2996 +++ + Y+ L+P Y + S I+FP V +V T EYC+ G C+ SEAG+ Sbjct 2780 LIQNASRYDMLKPHVMYPFYEHSGYIRFPEVIS-AGVHIVRTMAMEYCKVGRCDVSEAGL 2838 Query 2997 CVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIV 3056 C+S RWV+NN Y+R GV+CG A +L NM P+ P+GA+DI+ SI+ G ++A+V Sbjct 2839 CMSLQPRWVVNNAYFRQQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGALLAVV 2898 Query 3057 VTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYL 3116 V+ YY +RFRRAFG+YS V+ N L F+++ VLCL Y LP +Y++++LY T Y Sbjct 2899 VSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYATCYF 2958 Query 3117 TNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFE 3176 +D++ + H+ +++MF +VP W+T+ YI+ + ++H WF S KR V ++F +F+ Sbjct 2959 GSDIACMMHVSFLIMFAGVVPLWVTVLYIVVVLSRHILWFASLCTKRTVQVGDLAFHSFQ 3018 Query 3177 EAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAK 3236 +AAL TF+L+KE++L+L+ ++ Y +YLA+YNKYKY+SG MDT +YREAAC HL Sbjct 3019 DAALQTFMLDKEVFLRLKREI--SSDAYFKYLAMYNKYKYYSGPMDTAAYREAACSHLVM 3076 Query 3237 ALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLD 3296 AL +SN G D +YQPP+ S+ SA LQ+G +MA PSG VE C+V+V G+ TLNG+WLD Sbjct 3077 ALEKYSNGGGDTIYQPPRCSVASAALQAGLTRMAHPSGLVEPCLVKVNYGSMTLNGIWLD 3136 Query 3297 DVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDT 3356 + V CPRHV+C+ +++ NP+Y L +R +N++F V +RVIGH+M+ +LKL VD Sbjct 3137 NFVICPRHVMCSRDELANPDYPRLSMRAANYDFHVSQNGHNIRVIGHTMEGSLLKLTVDV 3196 Query 3357 ANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNID 3416 NPKTP Y F+R+ GQ S+LACY+G P+GVY C +R N T++ SFL GSCGS GF ++ Sbjct 3197 NNPKTPAYSFIRVSTGQAMSLLACYDGLPTGVYTCTLRSNGTMRASFLCGSCGSPGFVMN 3256 Query 3417 YDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVI 3476 V FCY+H +ELP G H GTD G FYGPF D+Q Q A D TITVNVLAWLYAAV+ Sbjct 3257 GKEVQFCYLHQLELPNGTHTGTDFSGVFYGPFEDKQVPQLAAPDCTITVNVLAWLYAAVL 3316 Query 3477 NGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQ 3536 +G+ WFL + + + +FN A+KY + +T + + +L PL+A+TGI+V M ++LK LL Sbjct 3317 SGENWFLTKSSISPAEFNNCAVKYMCQSVTSESLQVLQPLAAKTGISVERMLSALKVLLS 3376 Query 3537 NGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQ 3596 G GRTI+GS LEDE TP+D+ RQ GV Q + + T W + + ++L+L+Q Sbjct 3377 AGFCGRTIMGSCSLEDEHTPYDIGRQMLGVKLQGKFQSMFRWTLQWFAIIFVLTILILLQ 3436 Query 3597 STQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP 3656 QW+ L LP + F + +KHKH +L ++LLP AY+N Y P Sbjct 3437 LAQWTFVGALPFTLLLPLIGFVAVCVGFVSLLIKHKHTYLTVYLLPVAMVTAYYNFQYTP 3496 Query 3657 ASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLT 3716 +++ + V+ D + V L++ R V D R+W + + Sbjct 3497 EGVQGYLLSLYNYVNPGRIDVIGTDLLTMLIISVACTLLSVRMVRTDAYSRIWYVCTAVG 3556 Query 3717 LVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTL 3776 +Y + G+A AIS ++SV +NY+GV ++ A+ +V++ P + Sbjct 3557 WLYNCWTGSADTVAISYLTFMVSVFTNYTGVACASLYAAQFMVWVLKFLDPTILLLYGRF 3616 Query 3777 QCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSID 3836 +C+++ Y +GY CTCYFG+F L+NR FR TLG Y+Y+VS+QE RYMNS GLLPP NS Sbjct 3617 RCVLVCYLLVGYLCTCYFGVFNLINRLFRCTLGNYEYVVSSQELRYMNSHGLLPPTNSWQ 3676 Query 3837 AFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHN 3896 A LNIKL G+GG P +V+T+QS M+D+KCTSVVLLSVLQQLRVESSSKLWA CV+LHN Sbjct 3677 ALMLNIKLAGIGGIPIYRVSTIQSNMTDLKCTSVVLLSVLQQLRVESSSKLWALCVKLHN 3736 Query 3897 DILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA 3956 +IL + TEAFE VSLLSVLLS+ GA+++++LC +L+N + LQA+ASEFS+L SY Sbjct 3737 EILASNSPTEAFEAFVSLLSVLLSLPGAINLDELCSSILENNSVLQAVASEFSNLSSYVD 3796 Query 3957 FATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQA 4016 + AQ+AY+ AVA G + LKK++NVAKS D+D A RKLE+M++ AMT MYKQA Sbjct 3797 YENAQKAYDTAVATGAPASTVNALKKAMNVAKSVLDKDVATTRKLERMSELAMTAMYKQA 3856 Query 4017 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPD 4076 R+ED+R+KVT+AMQTMLF M+R+LD+DAL+NI+NNAR+G VPL +IP T A KL++V+PD Sbjct 3857 RAEDRRSKVTAAMQTMLFNMIRRLDSDALSNILNNARNGVVPLGVIPRTAANKLLLVVPD 3916 Query 4077 YNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR--AN 4134 ++ Y T T TYA + W++ QV DAD K V ++I+ +NS NLAWPL+VTA R A Sbjct 3917 FSVYTATITMPTLTYAGSAWDVMQVADADGKTVNATDITRENSVNLAWPLVVTAQRQQAT 3976 Query 4135 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 S VKLQNNEL P +++M+ AG +QTAC D A+AYYN TK GR V+A+L+D L +A Sbjct 3977 SPVKLQNNELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDGLAFA 4035 Query 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 + KS G G + ELEPPC+F+ DTPKGP +KYLYF KGL NL RG VLG+LA TVRL A Sbjct 4036 KVEKSTGDGFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLHA 4095 Query 4255 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4314 G+ATEV +NS++LS C+F+VD YKDYL +GG PI NCVKML HTGTG AIT P+A Sbjct 4096 GSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPDA 4155 Query 4315 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCG 4374 N+DQESFGGASCCLYCRCHI+HP G C KGK+VQIP NDP+GF ++N VC VC Sbjct 4156 NIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVCN 4215 Query 4375 MWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 MW+GYGC C LRE LQ+ D + FLN V Sbjct 4216 MWQGYGCPCSSLREINLQARD-ECFLNESGV 4245 >sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 4349 bits (11280), Expect = 0.0, Method: Composition-based stats. Identities = 1584/4467 (35%), Positives = 2371/4467 (53%), Gaps = 347/4467 (8%) Query 28 VRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV--LPQLEQPYVFIKRSDARTAPHG-HV 84 V G+ +EE L A+Q L+ LV V + P + V I S G Sbjct 29 VTGWDIPIEEALEYAKQQLRTPEPQLVFVPYYLSHAPGISGDRVVITDSIWYATNFGWQP 88 Query 85 MVELVAELEGIQYGRSGETLGVLVPH------VGEIPVAYRKVLLRKNGNKGAGGHSYGA 138 + EL + +G++YGR G T GVL+P +G+I + RK G G +S Sbjct 89 IRELAMDKDGVRYGRGG-THGVLLPMQDPSFIMGDIDIQIRKY--------GIGANSPPD 139 Query 139 DLKSFDLGDELGTD--PYEDFQENW-NTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 L +D + G D PY DF +N TK + ++ D +G Sbjct 140 VLPLWDGFSDPGPDVGPYLDFPDNCCPTKPKAKRGGDVYLS----------DQYGFDNNG 189 Query 196 YPLECIKDLLARAGKASCTLSEQLDFIDTKR--GVYCCREHEHEIAWYTERSEKSYELQT 253 +E + LL K+ TL + L + R Y + ++A R Q+ Sbjct 190 ILVEPVMKLLGVI-KSDFTLEQLLAALGKYRTEDGYDLPDGYVKVAIKVGRKAVPVLKQS 248 Query 254 PFEIKLAKKFDTFNGECPNFVFPLN--SIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNE 311 F + P + +P + S+++ +P + S+Y N Sbjct 249 IFTV-----VGVTEQLVPGYYYPFSTSSVVEHTKPTRGGPVGKTVEAVMLSLY---GTNN 300 Query 312 CNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCP 371 N +KC +C W + CG E + ++C V+K P Sbjct 301 YNPATPVARLKCSYCDYYGWTPLKDIGTVNCLCGAEF---QLTSSCVDAESAGVIK---P 354 Query 372 ACHNSEVGPEHSLAEYHNESGLKTILRKGGRT-IAFGGCVFSYVGCHNKCAYWVPRASAN 430 C + G++ I G RT ++FGG ++S +G N WVPRA + Sbjct 355 GC----------VMLLDKSPGMRLI--PGNRTYVSFGGAIWSPIGKVNGVTVWVPRAYSI 402 Query 431 IGCNHTGVVGEG-SEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSA--- 486 + H+G VG G + +N L+E L + I + D N A +A+ T A Sbjct 403 VAGEHSGAVGSGDTVAINKELVEYLIE---GIRVDADTLDNPTCATFIANLDCDTKAPVV 459 Query 487 -FVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVR 545 VE+++GL C K+ G E + L A+ + A Sbjct 460 HTVESLQGL-----------CLANKIMLGDKP---LPTDEFHPFIVGL-AYHVQRACWYG 504 Query 546 SIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGV 605 ++ SRT E ++ VR ++ +Q+ ++ + N V +AY TG V Sbjct 505 ALASRTFEAFRDFVRTEEER-------FAQFFGKVCAPI--------NGCVYLAYTTGRV 549 Query 606 VQLTSQWLTN------------IFGTVYEKLKPVLDWLEEKFKEGVEFLRDGW----EIV 649 ++ + N + V + LKP+L+W+ +K + + W E + Sbjct 550 TLFSAYQVLNTAIAKSKDAFGGVAAIVVDMLKPILEWVLKK----MSIAKGAWLPYAEGL 605 Query 650 KFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETF 709 + +V G+ + + L+ ++ S+ G K+ AL G + Sbjct 606 LALFKAQFTVVKGKFQFLRASLNSKCHSLCDLLTTIMSKLLTSVKWAGCKVDALYTGTYY 665 Query 710 VTHSKGLYRKCVKSREETGLLM-PLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQ 768 KG+ + + GLL+ P + E+ L+G+ LT+ L+ + + + Sbjct 666 YFSRKGVLTEVQLCAKRLGLLLTPKQQKMEVEVLDGDFDAPVTLTD---LELEECTGVLE 722 Query 769 PTSEAVEAPLV-GTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGD 827 A + LV GT V + + + +D Y + V F L+GG +KVTFGD Sbjct 723 EVFGASDVKLVKGTLVSLASKLFVRTEDGFLY-RYVKSGGVLGKAFRLRGGGVSKVTFGD 781 Query 828 DTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQP-- 885 + V + +VN ++++ E +D +L++ + + VE GT++ + ACVV AV + L Sbjct 782 EEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAVYERLSDLF 841 Query 886 --VSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYP--PDEDEEEGDCEEEEF 941 L P I+L+++ + +++ + E L MY S P +DE D E+ Sbjct 842 SDCPAELRP--INLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDDEMVDDIED--- 896 Query 942 EPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTT 1001 ++ + ++ WL D+ G+ED Sbjct 897 --------------------------TVEQASDSDDQWLGDE---------GAEDCD--- 918 Query 1002 IQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAA 1061 TI +V M GY K+ ++VYIK ADIV+EA+ V+VNAA Sbjct 919 -NTIQDVDVATSMTTP-----------CGYTKIAEHVYIKCADIVQEARNYSYAVLVNAA 966 Query 1062 NVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH-CLHVVGP 1120 NV L HGGGVAGALN+ATNNAMQ ES +YI NG L+ GG +LS H LA H LHVVGP Sbjct 967 NVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGHVLLSSHGLASHGILHVVGP 1026 Query 1121 NVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDK 1180 + G+D+ LL + Y + + +L PL+SAGIFG SL V V Y+ V+D+ Sbjct 1027 DKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLVKNVACTTYVVVYDR 1086 Query 1181 NLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVT 1240 LY++ +++ ++ + Q + I E + + V+Q + V+ Sbjct 1087 QLYERALATSFDVPGPQSSVQHVPAIDWAEA---VEVQESIVDQVETPSLGAVDTVDSNA 1143 Query 1241 TT-LEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAV 1299 + L ET EN++ + PD +V DV + V Sbjct 1144 DSGLNETARSPENVVGSV-------PDD------------------VVADV-----ESCV 1173 Query 1300 VIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSI 1359 +++ + ++KV D Q TVE+ + +L Sbjct 1174 ----------RDLVRQVVKKVKRDKRPPPIVPQ----QTVEQQPQEISSPGDCNTVL--- 1216 Query 1360 ISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDY- 1418 + VS + M+ +E L+PV ++ A + ++R +EG+ Sbjct 1217 --------VDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFSSN 1264 Query 1419 GARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVS 1478 G FY Y+ + + LN L L+ +P G++ +G L +A MR L VP TV V Sbjct 1265 GYEFYGYSRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVVP 1324 Query 1479 SPDAVTAYNGYLT---SSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIE----FLKRG 1531 S +V Y Y S T + F+ I L G+ +DW + + + KRG Sbjct 1325 SESSVPLYRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDVLQTTCTVDRKVYKTICKRG 1383 Query 1532 DKSVYYTSNPTTFHLDGE-VITFDNLKTLLSLREVR------TIKVFTTVDNINLHTQVV 1584 + + + + + + G+ V+ F + + E + IKV TTVD IN T +V Sbjct 1384 NTYLCF-DDTNLYAITGDVVLKFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLV 1442 Query 1585 DMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFL 1643 + +Y Q G + DG D + P + EG Y N + V A EYY D + + Sbjct 1443 STAQSYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNII 1502 Query 1644 GRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRAR 1703 R MS + W Y V+G + D+NCYL A+ LQ I++ F+ P + AY + Sbjct 1503 ARAMSIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVCRAYDALK 1562 Query 1704 AGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLK 1763 G +++A T G D +S + H + + +RV+ VC+ CG Q Sbjct 1563 GGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCGVSQMVFT 1621 Query 1764 GVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYEL-KHGTFT 1822 G +A + G++ + V + C CG+ A +Y+ +Q+SP+++MS P Q L G + Sbjct 1622 GTDACTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPLDTSGIWK 1681 Query 1823 CASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTY 1882 A + G GHY + + + D ++S+ K P TD+ Y S+T+ K TY Sbjct 1682 TAIVFRGPVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTSDSKVETY 1741 Query 1883 KLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKF-VCDNIKFADDL 1941 LDGV T IDP Y K+ + YFT PI++V P S+D F C N + A+ Sbjct 1742 YLDGVKRTTIDPDFSKYVKRGDYYFTTAPIEVV-AAPKLVTSYDGFYLSSCQNPQLAESF 1800 Query 1942 NQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKA 2001 N+ K +L +T +P++ GDVVAI + + G+ + KP+++ Sbjct 1801 NKAINATKTGPMKL-LTMYPNVAGDVVAISDDNVV-AHPYGSLHMGKPVLF--------- 1849 Query 2002 TYKPNTW-CIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENP-TIQK 2059 +PNTW + L ST V T N++DVL D PV+ E E P +++ Sbjct 1850 VTRPNTWKKLVPLLSTVVVNTPNTYDVLAV------------DPLPVNNETSEEPISVKA 1897 Query 2060 DVLECNVKTTEVVGDIILKPANNS-LKITEEVGHTDLMAAYVDN-SSLTIKKPNELSRVL 2117 + +K T V+ P N L +E TDL YV+ + K + LS+VL Sbjct 1898 PIPLYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKASHLSKVL 1957 Query 2118 GLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT--NIVTRCLNRV----------- 2164 GL+ + VN + + YA L V+T+ +VTR + + Sbjct 1958 GLRV--SDSSLHVNHLSKGVVYAYAATRLTTRVTTSLLGGLVTRSVRKTADFVRSTNPGS 2015 Query 2165 -CTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNF 2223 C + F+ L ++ + + IA NT V L + + ++ Sbjct 2016 KCVGLLCLFYQLFMRFWLLVKKPPI---VKVSGIIAYNTGCGVTTCVLNYLRSRCGNISW 2072 Query 2224 SKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYRE--GYLNSTNVTIATY 2281 S+L+ ++ + L + L GV +S PS T ++ G + + + Sbjct 2073 SRLLKLLRYMLYIWFVWTCLT----ICGVWLSEPYAPSLVTRFKYFLGIVMPCDYVLVNE 2128 Query 2282 CTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 +C++G+DSLD YP+L Q S ++ T ++ E F AY+L+T ++ Sbjct 2129 TGTGWLHHLCMAGMDSLD-YPALRMQQHRYGSP-YNYTYILMLLEAFFAYLLYTPALPIV 2186 Query 2342 GLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVV 2401 G+ A++ L Y + + NSWL+ + ++++ P ++M+RMYI A + +K ++HV Sbjct 2187 GILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGFLHVR 2245 Query 2402 DGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAG 2461 GCN+ C+MCYK+N A R+EC+T+VNGV+R FYV ANGG FC HNWNCV+CDT+ Sbjct 2246 YGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDTYTVD 2305 Query 2462 STFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHF 2521 STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ++YER + F Sbjct 2306 STFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYERFPMDAF 2365 Query 2522 VNLDNLRANNTKGSLP-INVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDV 2580 N+ L + KG+ P NV+VFD ++ EE++ K+A++YY+QL C+PILL+D+ +V V Sbjct 2366 TNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRMVGVV 2425 Query 2581 GDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQG 2640 GD A +A MF+AY + +++ M+K+K L +TA +++ +++++VL F+ + R Sbjct 2426 GDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVFVGSTRAE 2485 Query 2641 FVD--SDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 D SDV+T D+V C++L HQ E T DS NN + TY K + ++ ++G + +A++ Sbjct 2486 AKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQFMTANAKY 2545 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 +NA +AK + LIW DF+ LSE +R+Q++ AA+K L +T ++ + V + T Sbjct 2546 VNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKADVPCMVTPF 2605 Query 2759 ALKGG-KIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVT 2817 + GG + + +W + LI V ++ + + ++ TP ++M ++ +K ID V Sbjct 2606 KIIGGHRRIVSWRRVLIHVFMLLVVLNPQWF--TPWYIMRP---IEYNVVDFKVIDNAVI 2660 Query 2818 RDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTT 2877 RDI S D CFANK + F+ W+S R GSY N + CP++ V++ VG +VPGLP LR Sbjct 2661 RDITSADQCFANKFSAFENWYSNRYGSYVNSRGCPMVVGVVSDIVGSLVPGLPARFLRVG 2720 Query 2878 NGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTN 2937 L + AVG++CYTP I Y F TSACVLAA CT+F ASG+ +PYC D Sbjct 2721 T-TLLPLVNYGLGAVGSVCYTPHYAINYDVFDTSACVLAATCTLFSSASGERMPYCADAA 2779 Query 2938 VLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGV 2996 +++ + Y+ L+P Y + S I+FP V +V T EYC+ G C+ SEAG+ Sbjct 2780 LIQNASRYDMLKPHVMYPFYEHSGYIRFPEVIS-AGVHIVRTMAMEYCKVGRCDVSEAGL 2838 Query 2997 CVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIV 3056 C+S RWV+NN Y+R GV+CG A +L NM P+ P+GA+DI+ SI+ G ++A+V Sbjct 2839 CMSLQPRWVVNNAYFRQQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGALLAVV 2898 Query 3057 VTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYL 3116 V+ YY +RFRRAFG+YS V+ N L F+++ VLCL Y LP +Y++++LY T Y Sbjct 2899 VSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYATCYF 2958 Query 3117 TNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFE 3176 +D++ + H+ +++MF +VP W+T+ YI+ + ++H WF S KR V ++F +F+ Sbjct 2959 GSDIACMMHVSFLIMFAGVVPLWVTVLYIVVVLSRHILWFASLCTKRTVQVGDLAFHSFQ 3018 Query 3177 EAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAK 3236 +AAL TF+L+KE++L+L+ ++ Y +YLA+YNKYKY+SG MDT +YREAAC HL Sbjct 3019 DAALQTFMLDKEVFLRLKREI--SSDAYFKYLAMYNKYKYYSGPMDTAAYREAACSHLVM 3076 Query 3237 ALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLD 3296 AL +SN G D +YQPP+ S+ SA LQ+G +MA PSG VE C+V+V G+ TLNG+WLD Sbjct 3077 ALEKYSNGGGDTIYQPPRCSVASAALQAGLTRMAHPSGLVEPCLVKVNYGSMTLNGIWLD 3136 Query 3297 DVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDT 3356 + V CPRHV+C+ +++ NP+Y L +R +N++F V +RVIGH+M+ +LKL VD Sbjct 3137 NFVICPRHVMCSRDELANPDYPRLSMRAANYDFHVSQNGHNIRVIGHTMEGSLLKLTVDV 3196 Query 3357 ANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNID 3416 NPKTP Y F+R+ GQ S+LACY+G P+GVY C +R N T++ SFL GSCGS GF ++ Sbjct 3197 NNPKTPAYSFIRVSTGQAMSLLACYDGLPTGVYTCTLRSNGTMRASFLCGSCGSPGFVMN 3256 Query 3417 YDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVI 3476 V FCY+H +ELP G H GTD G FYGPF D+Q Q A D TITVNVLAWLYAAV+ Sbjct 3257 GKEVQFCYLHQLELPNGTHTGTDFSGVFYGPFEDKQVPQLAAPDCTITVNVLAWLYAAVL 3316 Query 3477 NGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQ 3536 +G+ WFL + + + +FN A+KY + +T + + +L PL+A+TGI+V M ++LK LL Sbjct 3317 SGENWFLTKSSISPAEFNNCAVKYMCQSVTSESLQVLQPLAAKTGISVERMLSALKVLLS 3376 Query 3537 NGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQ 3596 G GRTI+GS LEDE TP+D+ RQ GV Q + + T W + + ++L+L+Q Sbjct 3377 AGFCGRTIMGSCSLEDEHTPYDIGRQMLGVKLQGKFQSMFRWTLQWFAIIFVLTILILLQ 3436 Query 3597 STQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP 3656 QW+ L LP + F + +KHKH +L ++LLP AY+N Y P Sbjct 3437 LAQWTFVGALPFTLLLPLIGFVAVCVGFVSLLIKHKHTYLTVYLLPVAMVTAYYNFQYTP 3496 Query 3657 ASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLT 3716 +++ + V+ D + V L++ R V D R+W + + Sbjct 3497 EGVQGYLLSLYNYVNPGRIDVIGTDLLTMLIISVACTLLSVRMVRTDAYSRIWYVCTAVG 3556 Query 3717 LVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTL 3776 +Y + G+A AIS ++SV +NY+GV ++ A+ +V++ P + Sbjct 3557 WLYNCWTGSADTVAISYLTFMVSVFTNYTGVACASLYAAQFMVWVLKFLDPTILLLYGRF 3616 Query 3777 QCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSID 3836 +C+++ Y +GY CTCYFG+F L+NR FR TLG Y+Y+VS+QE RYMNS GLLPP NS Sbjct 3617 RCVLVCYLLVGYLCTCYFGVFNLINRLFRCTLGNYEYVVSSQELRYMNSHGLLPPTNSWQ 3676 Query 3837 AFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHN 3896 A LNIKL G+GG P +V+T+QS M+D+KCTSVVLLSVLQQLRVESSSKLWA CV+LHN Sbjct 3677 ALMLNIKLAGIGGIPIYRVSTIQSNMTDLKCTSVVLLSVLQQLRVESSSKLWALCVKLHN 3736 Query 3897 DILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA 3956 +IL + TEAFE VSLLSVLLS+ GA+++++LC +L+N + LQA+ASEFS+L SY Sbjct 3737 EILASNSPTEAFEAFVSLLSVLLSLPGAINLDELCSSILENNSVLQAVASEFSNLSSYVD 3796 Query 3957 FATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQA 4016 + AQ+AY+ AVA G + LKK++NVAKS D+D A RKLE+M++ AMT MYKQA Sbjct 3797 YENAQKAYDTAVATGAPASTVNALKKAMNVAKSVLDKDVATTRKLERMSELAMTAMYKQA 3856 Query 4017 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPD 4076 R+ED+R+KVT+AMQTMLF M+R+LD+DAL+NI+NNAR+G VPL +IP T A KL++V+PD Sbjct 3857 RAEDRRSKVTAAMQTMLFNMIRRLDSDALSNILNNARNGVVPLGVIPRTAANKLLLVVPD 3916 Query 4077 YNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR--AN 4134 ++ Y T T TYA + W++ QV DAD K V ++I+ +NS NLAWPL+VTA R A Sbjct 3917 FSVYTATITMPTLTYAGSAWDVMQVADADGKTVNATDITRENSVNLAWPLVVTAQRQQAT 3976 Query 4135 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 S VKLQNNEL P +++M+ AG +QTAC D A+AYYN TK GR V+A+L+D L +A Sbjct 3977 SPVKLQNNELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDGLAFA 4035 Query 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 + KS G G + ELEPPC+F+ DTPKGP +KYLYF KGL NL RG VLG+LA TVRL A Sbjct 4036 KVEKSTGDGFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLHA 4095 Query 4255 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4314 G+ATEV +NS++LS C+F+VD YKDYL +GG PI NCVKML HTGTG AIT P+A Sbjct 4096 GSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPDA 4155 Query 4315 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCG 4374 N+DQESFGGASCCLYCRCHI+HP G C KGK+VQIP NDP+GF ++N VC VC Sbjct 4156 NIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVCN 4215 Query 4375 MWKGYGCSCDQLREPMLQSADAQSFLN 4401 MW+GYGC C LRE LQ+ D + FLN Sbjct 4216 MWQGYGCPCSSLREINLQARD-ECFLN 4241 >sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=1a PE=1 SV=1 Length=4391 Score = 3851 bits (9986), Expect = 0.0, Method: Composition-based stats. Identities = 1244/3390 (37%), Positives = 1879/3390 (55%), Gaps = 174/3390 (5%) Query 1156 ADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPF- 1214 +V + + + ++V E ++ + +++A + + + + Sbjct 1034 VPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQTQ 1093 Query 1215 -ITESKPSVEQRKQDDK----KIKACVEEVT----TTLEETKFLTENLLLYI-------- 1257 +T + +++ D + K E VT ++ K E++L+ Sbjct 1094 SVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHG 1153 Query 1258 -DINGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTT 1310 I G ++ S V ++ P VGD V+ +G A VV P +A Sbjct 1154 GGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDV 1213 Query 1311 EMLAK---ALRKVPTDNYITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSI 1359 +L+K A+ P +T G+ G Y + EAKT + ++ + S+ Sbjct 1214 SLLSKCYKAMNAYPL--VVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSL 1271 Query 1360 ISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYG 1419 + + L LR + A++ + VC + A ++ K + VD G Sbjct 1272 TIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-G 1330 Query 1420 ARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSS 1479 ++Y YTSK T+ ++ N + +++MPLGYV+HGL+L +A +R + VP +++ Sbjct 1331 VQYYCYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLAN 1389 Query 1480 PDAVTAYNGYLTSSSK--TPEEHFIETISLAGSYKDWSYS-GQSTQLGI---EFLKRGDK 1533 + L S P E FI+ + G Y W G+ + + L D+ Sbjct 1390 KEQ----EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLNKLLHWSDQ 1445 Query 1534 SVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRT-----IKVFTTVDNINLHTQVVDMSM 1588 ++ Y + + F+ L + + RT I+V TVD +N T V++ Sbjct 1446 TICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKN 1505 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYM 1647 TY Q G + +GAD++ P G + Y+ N +A E Y DP+FL R+ Sbjct 1506 TYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFY 1565 Query 1648 SALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGE 1706 S KWK + + S+K +DNNCYL ++TL + ++KF PALQ A+ + + G+ Sbjct 1566 SLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGD 1625 Query 1707 AANFCALILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGV 1765 + +F ALI+AY N T G D + + A L S + V C CG + L+G+ Sbjct 1626 STDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGL 1685 Query 1766 EAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGT---FT 1822 +A Y+G + E + + C CG + + +V+ +P++++S P + + T F Sbjct 1686 KACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFV 1745 Query 1823 CASEYTG-NYQCGHYKHITSKETLYC-IDGALLTKSSEYKGPITDVFYKENSYTTTIKPV 1880 + + G GHY H K L D ++K+S++K +TDV + Y++ V Sbjct 1746 AFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVV 1805 Query 1881 TYKLDGVVCTEIDPKLDNYYKKDNSYFT-EQPIDLVPNQPYPNASFDNFKFVCDNIKFAD 1939 Y LDG TE+DP L +Y KD YFT E P+ P + + N V + + Sbjct 1806 RYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGG 1865 Query 1940 D-----LNQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW 1992 D N L G+ KP +++ +F P +GDV+ ++ Y P +K GA KPI+W Sbjct 1866 DAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILW 1925 Query 1993 HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVV 2052 + + K N +R ++ P+E N F L E PV V Sbjct 1926 VNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVEST------------PVEPPTV 1973 Query 2053 ENPTIQKD--VLECNVKTTEVV-GDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIK 2108 + +Q++ +++C V ++ ++ + E + DL YVD + + Sbjct 1974 DVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQVIVL 2033 Query 2109 KPNELSRVLGLKTLATHGLAAV---NSVPWDTIANYAKPFLNK----VVSTTTNIVTRCL 2161 K N LS +L L T+ + + V S+ + F K T T V C+ Sbjct 2034 KDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAVGSCI 2093 Query 2162 NRV-------------CTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTT---IAKNTVKS 2205 V C +++ F L L + ++ + +K S T + N VK Sbjct 2094 KSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGNVVKQ 2153 Query 2206 VGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMS---------- 2255 ++ S + L+ ++ + +++ V L S+ + VL S Sbjct 2154 CCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFEDAQGL 2213 Query 2256 ---------NLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLE 2305 LG+ S C G Y + + + T+C S C+ CL DS+ YP+L+ Sbjct 2214 KKFYKEVRAYLGISSACDGLASAYR-ANSFDVPTFCANRSAMCNWCLISQDSITHYPALK 2272 Query 2306 TIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVH--FISNSW 2363 +Q +S + ++ E LAY+L+T F L LA + FF+ ++ + S ++ Sbjct 2273 MVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWRSYNY 2332 Query 2364 LMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVEC 2423 + L P++ +VRMY A + + K Y HV++GC + C++CYKRNR TRVE Sbjct 2333 AVSSAFWLFTHIPMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKRNRLTRVEA 2392 Query 2424 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 2483 +T+V G +R+FY+ ANGG FC+ HNWNCV+CDT G+TFI +EVA DL+ +RPIN Sbjct 2393 STVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTTALRRPINA 2452 Query 2484 TDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPIN 2539 TD+S Y VDSVTVK + + + GQ YER L F NLD L+ T G N Sbjct 2453 TDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKTTTGIPEYN 2512 Query 2540 VIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFS 2599 I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ VGDS+E+A KMFD++VN+F Sbjct 2513 FIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMFDSFVNSFV 2572 Query 2600 STFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLS 2658 S +NV +KL+ L++TA + + + +VL+TFI AAR V+SDVET ++V+ ++ + Sbjct 2573 SLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNEIVDSVQYA 2632 Query 2659 HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDF 2718 H+ DI++T +S NNY+ +Y K ++++ DLG+ IDC+A +N V ++ N A IWN + Sbjct 2633 HKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGACIWNAAAY 2692 Query 2719 MSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI-ALKGGKIVNNWL------- 2770 M LS+ L++QIR A +K NL F+LT + R N+++ + A K W Sbjct 2693 MKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFTANKIVGGAPTWFNALRDFT 2752 Query 2771 -KQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFAN 2829 K + T++ A + YL P M + I+ +K +D G+ RD+ D CFAN Sbjct 2753 LKGYVLATIIVFLCAVLMYLCLPTFSMVPVEFYEDRILDFKVLDNGIIRDVNPDDKCFAN 2812 Query 2830 KHADFDTWFSQR-GGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRV 2888 KH F W+ + GG Y N CPL AVI G +P +P T+ N + F+ RV Sbjct 2813 KHRSFTQWYHEHVGGVYDNSITCPLTVAVIAGVAGARIPDVPTTLAWV-NNQIIFFVSRV 2871 Query 2889 FSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESL 2948 F+ G++CYTP I Y F+ S C+L +ECT+F+DA G+ PYC+D VL G+ AY + Sbjct 2872 FANTGSVCYTPIDEIPYKSFSDSGCILPSECTMFRDAEGRMTPYCHDPTVLPGAFAYSQM 2931 Query 2949 RPDTRYVLMDGSI-IQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLN 3007 RP RY L DG++ I+FP E ++R+ T ++YCR G+CE ++ GVC++T+G W + Sbjct 2932 RPHVRYDLYDGNMFIKFPEVVFESTLRITRTLSTQYCRFGSCEYAQEGVCITTNGSWAIF 2991 Query 3008 NDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRF 3067 ND++ + PGV+CG D ++++ + L QPI ++ S+V G + +T L YY + Sbjct 2992 NDHHLNRPGVYCGSDFIDIVRRLAVSLFQPITYFQLTTSLVLGIGLCAFLTLLFYYINKV 3051 Query 3068 RRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQ 3127 +RAF +Y+ + +++ +C Y+ +Y Y TFY TN+ +F+ H+ Sbjct 3052 KRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVPYTALYYYATFYFTNEPAFIMHVS 3111 Query 3128 WMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV--VFNGVSFSTFEEAALCTFLL 3185 W +MF P+VP W+T Y + + +HF+W + + K+ V +G +F++AA F++ Sbjct 3112 WYIMFGPIVPIWMTCVYTVAMCFRHFFWVLAYFSKKHVEVFTDGKLNCSFQDAASNIFVI 3171 Query 3186 NKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSG 3245 NK+ Y LR+ L Y+R+L L+NKYKYFSGAM+T +YREAA CHLAKAL +S +G Sbjct 3172 NKDTYAALRNS--LTNDAYSRFLGLFNKYKYFSGAMETAAYREAAACHLAKALQTYSETG 3229 Query 3246 SDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHV 3305 SD+LYQPP SITS VLQSG KM+ PSG VE CMVQVTCG+ TLNGLWLD+ V+CPRHV Sbjct 3230 SDLLYQPPNCSITSGVLQSGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHV 3289 Query 3306 ICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPKTP 3362 +C ++ + +PNY+ LLI +NH+F VQ LRV+GH+MQ +LKL VD ANP TP Sbjct 3290 MCPADQLSDPNYDALLISMTNHSFSVQKHIGAPANLRVVGHAMQGTLLKLTVDVANPSTP 3349 Query 3363 KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSF 3422 Y F ++PG FSVLACYNG P+G + MRPN+TIKGSFL GSCGSVG+ + ++F Sbjct 3350 AYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGYTKEGSVINF 3409 Query 3423 CYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWF 3482 CYMH MEL G H G+ +G YG F+D+Q Q TD +VNV+AWLYAA++NG WF Sbjct 3410 CYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNGCAWF 3469 Query 3483 LNRFTTTLNDFNLVAMKYNYE-PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNG 3541 + T++ FN A+ + + VD+ L+ +TG+A+ + ++++L G G Sbjct 3470 VKPNRTSVVSFNEWALANQFTEFVGTQSVDM---LAVKTGVAIEQLLYAIQQLY-TGFQG 3525 Query 3542 RTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWS 3601 + ILGS +LEDEFTP DV Q GV QS V++ GT HWL T++++ ++++Q+T+++ Sbjct 3526 KQILGSTMLEDEFTPEDVNMQIMGVVMQSGVRKVTYGTAHWLFATLVSTYVIILQATKFT 3585 Query 3602 LFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----A 3657 L+ +L+E + AF M+ VKHKH FL LFLLP + Y N+VY P + Sbjct 3586 LWNYLFETIPTQLFPLLFVTMAFVMLLVKHKHTFLTLFLLPVAICLTYANIVYEPTTPIS 3645 Query 3658 SWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL 3717 S ++ + WL + + D +Y S ++L+++ R + L + + Sbjct 3646 SALIAVANWLAPTNAYMRTTH-TDIGVYISMSLVLVIVVKRLYNPSLSNFALALCSGVMW 3704 Query 3718 VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQ 3777 +Y G A I+ + ++TS+Y+ V + LA+ + Y P + ++ Sbjct 3705 LYTYSIGEA-SSPIAYLVFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVK 3763 Query 3778 CIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDA 3837 I+L+Y LG+ CTCYFG+F LLN R +GVYD+ VSTQEFR+M + L P+NS +A Sbjct 3764 MILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWEA 3823 Query 3838 FKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3897 LN KL+G+GG PCIKVA +QSK++D+KCTSVVLLSVLQQL +E++S+ WA CV+ HND Sbjct 3824 MALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKCHND 3883 Query 3898 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAF 3957 IL A D +EAFEK VSL + L++ G VD++ L ++ D + LQA SEFS L ++A Sbjct 3884 ILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIFDTPSVLQATLSEFSHLATFAEL 3943 Query 3958 ATAQEAYEQAVANGD-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQA 4016 AQ+AY++A+ +GD S VLK L+K++N+AK+ +++D A+ RKLE+MADQAMT MYKQA Sbjct 3944 EAAQKAYQEAMDSGDTSPQVLKALQKAVNIAKNAYEKDKAVARKLERMADQAMTSMYKQA 4003 Query 4017 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPD 4076 R+EDK+AK+ SAMQTMLF M++KLDND LN II+NAR+GC+PL++IPL + KL VVIPD Sbjct 4004 RAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPD 4063 Query 4077 YNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN-S 4135 + + + YA ALW+I + + D++IV+ S++ +D++ NL WPL++ RA+ S Sbjct 4064 FTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDV-VDSNENLTWPLVLECTRASTS 4122 Query 4136 AVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWAR 4195 AVKLQNNE+ P L+ M +AG QT C + ++LAYY +G + ++ALLSD LKWAR Sbjct 4123 AVKLQNNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYYEPVQGRKMLMALLSDNAYLKWAR 4181 Query 4196 FPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAG 4255 DG + EL+PPC+F+ PKGP+++YLYF+K LNNL+RG VLG +AATVRLQAG Sbjct 4182 VEGKDG--FVSVELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQAG 4239 Query 4256 NATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEAN 4315 + TE +NS+VLS F VD KAY D++ +GG P+TNCVKML TGTG AI+V PE+ Sbjct 4240 SNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPEST 4299 Query 4316 MDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGM 4375 DQE++GGAS CLYCR HI+HP+ G C KGK+VQIP C DPVGF L NT C VC Sbjct 4300 ADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVCQY 4359 Query 4376 WKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 W GYGC+CD LR+ L + +FLN V Sbjct 4360 WIGYGCNCDSLRQAALPQSKDSNFLNESGV 4389 Score = 955 bits (2468), Expect = 0.0, Method: Composition-based stats. Identities = 291/1279 (23%), Positives = 520/1279 (41%), Gaps = 136/1279 (11%) Query 11 KTHVQLSLPVLQVRDV---LVRGFGDSVEEVLSEARQHLKDGTCGLVEVEK--GVLPQLE 65 + HV L++P+ ++ L F D E + L L + G L Sbjct 26 QDHVSLTVPLCGSGNLVEKLSPWFMDG-ENAYEVVKAMLLKKEPLLYVPIRLAGHTRHLP 84 Query 66 QPYVFIKRSDARTAPHGHVMVELVAELEG-----IQYGRSGETLGVLVPHVGEIPVAYRK 120 P V++ MV +A + G+ +G+ P+ E+ + Sbjct 85 GPRVYLVERLIACEN--PFMVNQLAYSSSANGSLVGTTLQGKPIGMFFPYDIELVTGKQN 142 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 +LLRK G GG+ Y ++ + + +DF+ + K+ + L+++L GG Sbjct 143 ILLRKYGR---GGYHYTP--FHYERDNTSCPEWMDDFEADPKGKY----AQNLLKKLIGG 193 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKA-SCTLSEQLDFIDTKRGVYCCREHEHEIA 239 T VD CG DG P+ L+A+ G + + G + + + + Sbjct 194 DVTP-VDQYMCGVDGKPISAYAFLMAKDGITKLADVEADVAARADDEGFITLKNNLYRLV 252 Query 240 WYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGR 299 W+ ER + Y Q+ F I + D P F L I T+ PR + + + Sbjct 253 WHVERKDVPYPKQSIFTINSVVQKDGVENTPP-HYFTLGCKILTLTPRNKWSGVSDLSLK 311 Query 300 IRSVYPV---ASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GAT 355 + +Y S + S ++C CG SW TG+ ++ CG + Sbjct 312 QKLLYTFYGKESLENPTYIYHSAFIECGSCGNDSWLTGNAIQGFACGCGASYTANDVEVQ 371 Query 356 TCGYLPQNAVVKIYCPACHNSEVG--PEHSLAEYHNESG--LKTILRKGGRTIAFGGCVF 411 + G + NA++ CP +HS+A+ + I T+ FGG + Sbjct 372 SSGMIKPNALLCATCPFAKGDSCSSNCKHSVAQLVSYLSERCNVIADSKSFTLIFGGVAY 431 Query 412 SYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDF 467 +Y GC Y+VPRA + + + G G + + + L++ + ++N VG+F Sbjct 432 AYFGCEEGTMYFVPRAKSVVSRIGDSI-FTGCTGSWNKVTQIANMFLEQTQHSLNFVGEF 490 Query 468 KLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIG--- 524 +N+ + IL+ + + + +KG+ + + + VT G A N+G Sbjct 491 VVNDVVLAILSGTTTNVDKIRQLLKGVTLDKLRDYLADY-DVAVTAGPFMDNAINVGGTG 549 Query 525 -EQKSILSPLYAFAS--EAARVVRSIFSRTLETAQNSV------RVLQKAAITILDGISQ 575 + +I +P E+ + V +I + + ++++ + + + G+S Sbjct 550 LQYAAITAPYVVLTGLGESFKKVATIPYKVCNSVKDTLTYYAHSVLYRVFPYDMDSGVSS 609 Query 576 YSLRLIDAMMFTSDLATNNLVVMAYITGGVVQ-LTSQWLTNIFGTVYEKLKPVLDWLEEK 634 +S L D + + V Y ++Q T +++ I + + +LD E Sbjct 610 FSELLFDCV--------DLSVASTYFLVRLLQDKTGDFMSTIITSCQTAVSKLLDTCFEA 661 Query 635 FKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSII 694 + FL D + + A V ++ V+ L+NK + L + Sbjct 662 TEATFNFLLDLAGLFRIFLRNAYVYTSQGFVVVNGKVSTLVKQVLDLLNKGMQLLHTKVS 721 Query 695 IGGAKLKA-LNLGETFVTHSKGLYRKCVKSR-----EETGLLMPLKAPKEIIFLEGETLP 748 G+ + A + G + G Y CV ++ ++ +++P + K+ + L T Sbjct 722 WAGSNISAVIYSGRESLIFPSGTYY-CVTTKAKSVQQDLDVILPGEFSKKQLGLLQPTDN 780 Query 749 TEVLT-----EEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKY--CA 801 + ++ V G L+ + + +VG V I+ + + K+ + + Sbjct 781 STTVSVTVSSNMVETVVGQLEQTNMHSPDV----IVGDYVIISEKLFVRSKEEDGFAFYP 836 Query 802 LAPNMMVTNNTFTLKGGAP-TKVTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSA 859 N F LKGGAP KV FG D V EV +SV + + + +D +L + Sbjct 837 ACTNGHAVPTLFRLKGGAPVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRT 896 Query 860 YTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASH 919 + V+ + EFA VV + V L + + DLD++ A Y F+ G+ +S Sbjct 897 FVVDKSLSIEEFADVVKEQVSDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSST 956 Query 920 MYCSFYPPDEDEEEGD------------CEEEEFEPSTQYEYGTEDDY------QGKPL- 960 M S +P + DEE + C E + DD + PL Sbjct 957 MIFSLHPVECDEECSEVEASDLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLD 1016 Query 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQL-------- 1012 E + ++Q E + E ++D +Q + +T + VEV PQ+ Sbjct 1017 EAEDVTESVQEEAQPVEVPVEDIAQVVIADT----LQETPVVSDTVEVPPQVVKLPSEPQ 1072 Query 1013 -----------------------EMELTPVVQTIEVNSFS--GYLKLTDNVYIKNADIVE 1047 ++ + + V+ S + +T+ V I D ++ Sbjct 1073 TIQPEVKEVAPVYEADTEQTQSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQ 1132 Query 1048 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 1107 AK +V+VNAAN +LKHGGG+AGA+N A+ A+Q ESD+YI GPL+VG S +L G Sbjct 1133 VAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQG 1192 Query 1108 HNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVD 1167 H+LAK+ LHVVGP+ +D+ LL Y+ N + +++ PL+SAGIFG P S + Sbjct 1193 HSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIR 1252 Query 1168 TVRTNVYLAVFDKNLYDKL 1186 +T V + V +++Y L Sbjct 1253 EAKTRVLVVVNSQDVYKSL 1271 >sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 3844 bits (9969), Expect = 0.0, Method: Composition-based stats. Identities = 1242/3385 (37%), Positives = 1877/3385 (55%), Gaps = 174/3385 (5%) Query 1156 ADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPF- 1214 +V + + + ++V E ++ + +++A + + + + Sbjct 1034 VPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQTQ 1093 Query 1215 -ITESKPSVEQRKQDDK----KIKACVEEVT----TTLEETKFLTENLLLYI-------- 1257 +T + +++ D + K E VT ++ K E++L+ Sbjct 1094 SVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHG 1153 Query 1258 -DINGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTT 1310 I G ++ S V ++ P VGD V+ +G A VV P +A Sbjct 1154 GGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDV 1213 Query 1311 EMLAK---ALRKVPTDNYITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSI 1359 +L+K A+ P +T G+ G Y + EAKT + ++ + S+ Sbjct 1214 SLLSKCYKAMNAYPL--VVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSL 1271 Query 1360 ISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYG 1419 + + L LR + A++ + VC + A ++ K + VD G Sbjct 1272 TIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-G 1330 Query 1420 ARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSS 1479 ++Y YTSK T+ ++ N + +++MPLGYV+HGL+L +A +R + VP +++ Sbjct 1331 VQYYCYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLAN 1389 Query 1480 PDAVTAYNGYLTSSSK--TPEEHFIETISLAGSYKDWSYS-GQSTQLGI---EFLKRGDK 1533 + L S P E FI+ + G Y W G+ + + L D+ Sbjct 1390 KEQ----EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLNKLLHWSDQ 1445 Query 1534 SVYYTSNPTTFHLDGEVITFDNLKTLLSLREVRT-----IKVFTTVDNINLHTQVVDMSM 1588 ++ Y + + F+ L + + RT I+V TVD +N T V++ Sbjct 1446 TICYKDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKN 1505 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAF-EYYHTTDPSFLGRYM 1647 TY Q G + +GAD++ P G + Y+ N +A E Y DP+FL R+ Sbjct 1506 TYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFY 1565 Query 1648 SALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGE 1706 S KWK + + S+K +DNNCYL ++TL + ++KF PALQ A+ + + G+ Sbjct 1566 SLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGD 1625 Query 1707 AANFCALILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGV 1765 + +F ALI+AY N T G D + + A L S + V C CG + L+G+ Sbjct 1626 STDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGL 1685 Query 1766 EAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGT---FT 1822 +A Y+G + E + + C CG + + +V+ +P++++S P + + T F Sbjct 1686 KACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFV 1745 Query 1823 CASEYTG-NYQCGHYKHITSKETLYC-IDGALLTKSSEYKGPITDVFYKENSYTTTIKPV 1880 + + G GHY H K L D ++K+S++K +TDV + Y++ V Sbjct 1746 AFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVV 1805 Query 1881 TYKLDGVVCTEIDPKLDNYYKKDNSYFT-EQPIDLVPNQPYPNASFDNFKFVCDNIKFAD 1939 Y LDG TE+DP L +Y KD YFT E P+ P + + N V + + Sbjct 1806 RYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGG 1865 Query 1940 D-----LNQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW 1992 D N L G+ KP +++ +F P +GDV+ ++ Y P +K GA KPI+W Sbjct 1866 DAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILW 1925 Query 1993 HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVV 2052 + + K N +R ++ P+E N F L E PV V Sbjct 1926 VNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVEST------------PVEPPTV 1973 Query 2053 ENPTIQKD--VLECNVKTTEVV-GDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIK 2108 + +Q++ +++C V ++ ++ + E + DL YVD + + Sbjct 1974 DVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQVIVL 2033 Query 2109 KPNELSRVLGLKTLATHGLAAV---NSVPWDTIANYAKPFLNK----VVSTTTNIVTRCL 2161 K N LS +L L T+ + + V S+ + F K T T V C+ Sbjct 2034 KDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAVGSCI 2093 Query 2162 NRV-------------CTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTT---IAKNTVKS 2205 V C +++ F L L + ++ + +K S T + N VK Sbjct 2094 KSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGNVVKQ 2153 Query 2206 VGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMS---------- 2255 ++ S + L+ ++ + +++ V L S+ + VL S Sbjct 2154 CCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFEDAQGL 2213 Query 2256 ---------NLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLE 2305 LG+ S C G Y + + + T+C S C+ CL DS+ YP+L+ Sbjct 2214 KKFYKEVRAYLGISSACDGLASAYR-ANSFDVPTFCANRSAMCNWCLISQDSITHYPALK 2272 Query 2306 TIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVH--FISNSW 2363 +Q +S + ++ E LAY+L+T F L LA + FF+ ++ + S ++ Sbjct 2273 MVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWRSYNY 2332 Query 2364 LMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVEC 2423 + L P++ +VRMY A + + K Y HV++GC + C++CYKRNR TRVE Sbjct 2333 AVSSAFWLFTHIPMAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKRNRLTRVEA 2392 Query 2424 TTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINP 2483 +T+V G +R+FY+ ANGG FC+ HNWNCV+CDT G+TFI +EVA DL+ +RPIN Sbjct 2393 STVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTTALRRPINA 2452 Query 2484 TDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPIN 2539 TD+S Y VDSVTVK + + + GQ YER L F NLD L+ T G N Sbjct 2453 TDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKTTTGIPEYN 2512 Query 2540 VIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFS 2599 I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ VGDS+E+A KMFD++VN+F Sbjct 2513 FIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMFDSFVNSFV 2572 Query 2600 STFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLS 2658 S +NV +KL+ L++TA + + + +VL+TFI AAR V+SDVET ++V+ ++ + Sbjct 2573 SLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNEIVDSVQYA 2632 Query 2659 HQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDF 2718 H+ DI++T +S NNY+ +Y K ++++ DLG+ IDC+A +N V ++ N A IWN + Sbjct 2633 HKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGACIWNAAAY 2692 Query 2719 MSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI-ALKGGKIVNNWL------- 2770 M LS+ L++QIR A +K NL F+LT + R N+++ + A K W Sbjct 2693 MKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFTANKIVGGAPTWFNALRDFT 2752 Query 2771 -KQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFAN 2829 K + T++ A + YL P M + I+ +K +D G+ RD+ D CFAN Sbjct 2753 LKGYVLATIIVFLCAVLMYLCLPTFSMVPVEFYEDRILDFKVLDNGIIRDVNPDDKCFAN 2812 Query 2830 KHADFDTWFSQR-GGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRV 2888 KH F W+ + GG Y N CPL AVI G +P +P T+ N + F+ RV Sbjct 2813 KHRSFTQWYHEHVGGVYDNSITCPLTVAVIAGVAGARIPDVPTTLAWV-NNQIIFFVSRV 2871 Query 2889 FSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESL 2948 F+ G++CYTP I Y F+ S C+L +ECT+F+DA G+ PYC+D VL G+ AY + Sbjct 2872 FANTGSVCYTPIDEIPYKSFSDSGCILPSECTMFRDAEGRMTPYCHDPTVLPGAFAYSQM 2931 Query 2949 RPDTRYVLMDGSI-IQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLN 3007 RP RY L DG++ I+FP E ++R+ T ++YCR G+CE ++ GVC++T+G W + Sbjct 2932 RPHVRYDLYDGNMFIKFPEVVFESTLRITRTLSTQYCRFGSCEYAQEGVCITTNGSWAIF 2991 Query 3008 NDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRF 3067 ND++ + PGV+CG D ++++ + L QPI ++ S+V G + +T L YY + Sbjct 2992 NDHHLNRPGVYCGSDFIDIVRRLAVSLFQPITYFQLTTSLVLGIGLCAFLTLLFYYINKV 3051 Query 3068 RRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQ 3127 +RAF +Y+ + +++ +C Y+ +Y Y TFY TN+ +F+ H+ Sbjct 3052 KRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVPYTALYYYATFYFTNEPAFIMHVS 3111 Query 3128 WMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV--VFNGVSFSTFEEAALCTFLL 3185 W +MF P+VP W+T Y + + +HF+W + + K+ V +G +F++AA F++ Sbjct 3112 WYIMFGPIVPIWMTCVYTVAMCFRHFFWVLAYFSKKHVEVFTDGKLNCSFQDAASNIFVI 3171 Query 3186 NKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSG 3245 NK+ Y LR+ L Y+R+L L+NKYKYFSGAM+T +YREAA CHLAKAL +S +G Sbjct 3172 NKDTYAALRNS--LTNDAYSRFLGLFNKYKYFSGAMETAAYREAAACHLAKALQTYSETG 3229 Query 3246 SDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHV 3305 SD+LYQPP SITS VLQSG KM+ PSG VE CMVQVTCG+ TLNGLWLD+ V+CPRHV Sbjct 3230 SDLLYQPPNCSITSGVLQSGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHV 3289 Query 3306 ICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPKTP 3362 +C ++ + +PNY+ LLI +NH+F VQ LRV+GH+MQ +LKL VD ANP TP Sbjct 3290 MCPADQLSDPNYDALLISMTNHSFSVQKHIGAPANLRVVGHAMQGTLLKLTVDVANPSTP 3349 Query 3363 KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSF 3422 Y F ++PG FSVLACYNG P+G + MRPN+TIKGSFL GSCGSVG+ + ++F Sbjct 3350 AYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGYTKEGSVINF 3409 Query 3423 CYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWF 3482 CYMH MEL G H G+ +G YG F+D+Q Q TD +VNV+AWLYAA++NG WF Sbjct 3410 CYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNGCAWF 3469 Query 3483 LNRFTTTLNDFNLVAMKYNYE-PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNG 3541 + T++ FN A+ + + VD+ L+ +TG+A+ + ++++L G G Sbjct 3470 VKPNRTSVVSFNEWALANQFTEFVGTQSVDM---LAVKTGVAIEQLLYAIQQLY-TGFQG 3525 Query 3542 RTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWS 3601 + ILGS +LEDEFTP DV Q GV QS V++ GT HWL T++++ ++++Q+T+++ Sbjct 3526 KQILGSTMLEDEFTPEDVNMQIMGVVMQSGVRKVTYGTAHWLFATLVSTYVIILQATKFT 3585 Query 3602 LFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----A 3657 L+ +L+E + AF M+ VKHKH FL LFLLP + Y N+VY P + Sbjct 3586 LWNYLFETIPTQLFPLLFVTMAFVMLLVKHKHTFLTLFLLPVAICLTYANIVYEPTTPIS 3645 Query 3658 SWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL 3717 S ++ + WL + + D +Y S ++L+++ R + L + + Sbjct 3646 SALIAVANWLAPTNAYMRTTH-TDIGVYISMSLVLVIVVKRLYNPSLSNFALALCSGVMW 3704 Query 3718 VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQ 3777 +Y G A I+ + ++TS+Y+ V + LA+ + Y P + ++ Sbjct 3705 LYTYSIGEA-SSPIAYLVFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVK 3763 Query 3778 CIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDA 3837 I+L+Y LG+ CTCYFG+F LLN R +GVYD+ VSTQEFR+M + L P+NS +A Sbjct 3764 MILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWEA 3823 Query 3838 FKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3897 LN KL+G+GG PCIKVA +QSK++D+KCTSVVLLSVLQQL +E++S+ WA CV+ HND Sbjct 3824 MALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKCHND 3883 Query 3898 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAF 3957 IL A D +EAFEK VSL + L++ G VD++ L ++ D + LQA SEFS L ++A Sbjct 3884 ILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIFDTPSVLQATLSEFSHLATFAEL 3943 Query 3958 ATAQEAYEQAVANGD-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQA 4016 AQ+AY++A+ +GD S VLK L+K++N+AK+ +++D A+ RKLE+MADQAMT MYKQA Sbjct 3944 EAAQKAYQEAMDSGDTSPQVLKALQKAVNIAKNAYEKDKAVARKLERMADQAMTSMYKQA 4003 Query 4017 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPD 4076 R+EDK+AK+ SAMQTMLF M++KLDND LN II+NAR+GC+PL++IPL + KL VVIPD Sbjct 4004 RAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPD 4063 Query 4077 YNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN-S 4135 + + + YA ALW+I + + D++IV+ S++ +D++ NL WPL++ RA+ S Sbjct 4064 FTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDV-VDSNENLTWPLVLECTRASTS 4122 Query 4136 AVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWAR 4195 AVKLQNNE+ P L+ M +AG QT C + ++LAYY +G + ++ALLSD LKWAR Sbjct 4123 AVKLQNNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYYEPVQGRKMLMALLSDNAYLKWAR 4181 Query 4196 FPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAG 4255 DG + EL+PPC+F+ PKGP+++YLYF+K LNNL+RG VLG +AATVRLQAG Sbjct 4182 VEGKDG--FVSVELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQAG 4239 Query 4256 NATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEAN 4315 + TE +NS+VLS F VD KAY D++ +GG P+TNCVKML TGTG AI+V PE+ Sbjct 4240 SNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPEST 4299 Query 4316 MDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGM 4375 DQE++GGAS CLYCR HI+HP+ G C KGK+VQIP C DPVGF L NT C VC Sbjct 4300 ADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVCQY 4359 Query 4376 WKGYGCSCDQLREPMLQSADAQSFL 4400 W GYGC+CD LR+ L + +FL Sbjct 4360 WIGYGCNCDSLRQAALPQSKDSNFL 4384 Score = 955 bits (2468), Expect = 0.0, Method: Composition-based stats. Identities = 291/1279 (23%), Positives = 520/1279 (41%), Gaps = 136/1279 (11%) Query 11 KTHVQLSLPVLQVRDV---LVRGFGDSVEEVLSEARQHLKDGTCGLVEVEK--GVLPQLE 65 + HV L++P+ ++ L F D E + L L + G L Sbjct 26 QDHVSLTVPLCGSGNLVEKLSPWFMDG-ENAYEVVKAMLLKKEPLLYVPIRLAGHTRHLP 84 Query 66 QPYVFIKRSDARTAPHGHVMVELVAELEG-----IQYGRSGETLGVLVPHVGEIPVAYRK 120 P V++ MV +A + G+ +G+ P+ E+ + Sbjct 85 GPRVYLVERLIACEN--PFMVNQLAYSSSANGSLVGTTLQGKPIGMFFPYDIELVTGKQN 142 Query 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 +LLRK G GG+ Y ++ + + +DF+ + K+ + L+++L GG Sbjct 143 ILLRKYGR---GGYHYTP--FHYERDNTSCPEWMDDFEADPKGKY----AQNLLKKLIGG 193 Query 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKA-SCTLSEQLDFIDTKRGVYCCREHEHEIA 239 T VD CG DG P+ L+A+ G + + G + + + + Sbjct 194 DVTP-VDQYMCGVDGKPISAYAFLMAKDGITKLADVEADVAARADDEGFITLKNNLYRLV 252 Query 240 WYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGR 299 W+ ER + Y Q+ F I + D P F L I T+ PR + + + Sbjct 253 WHVERKDVPYPKQSIFTINSVVQKDGVENTPP-HYFTLGCKILTLTPRNKWSGVSDLSLK 311 Query 300 IRSVYPV---ASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKE-GAT 355 + +Y S + S ++C CG SW TG+ ++ CG + Sbjct 312 QKLLYTFYGKESLENPTYIYHSAFIECGSCGNDSWLTGNAIQGFACGCGASYTANDVEVQ 371 Query 356 TCGYLPQNAVVKIYCPACHNSEVG--PEHSLAEYHNESG--LKTILRKGGRTIAFGGCVF 411 + G + NA++ CP +HS+A+ + I T+ FGG + Sbjct 372 SSGMIKPNALLCATCPFAKGDSCSSNCKHSVAQLVSYLSERCNVIADSKSFTLIFGGVAY 431 Query 412 SYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVNINIVGDF 467 +Y GC Y+VPRA + + + G G + + + L++ + ++N VG+F Sbjct 432 AYFGCEEGTMYFVPRAKSVVSRIGDSI-FTGCTGSWNKVTQIANMFLEQTQHSLNFVGEF 490 Query 468 KLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIG--- 524 +N+ + IL+ + + + +KG+ + + + VT G A N+G Sbjct 491 VVNDVVLAILSGTTTNVDKIRQLLKGVTLDKLRDYLADY-DVAVTAGPFMDNAINVGGTG 549 Query 525 -EQKSILSPLYAFAS--EAARVVRSIFSRTLETAQNSV------RVLQKAAITILDGISQ 575 + +I +P E+ + V +I + + ++++ + + + G+S Sbjct 550 LQYAAITAPYVVLTGLGESFKKVATIPYKVCNSVKDTLTYYAHSVLYRVFPYDMDSGVSS 609 Query 576 YSLRLIDAMMFTSDLATNNLVVMAYITGGVVQ-LTSQWLTNIFGTVYEKLKPVLDWLEEK 634 +S L D + + V Y ++Q T +++ I + + +LD E Sbjct 610 FSELLFDCV--------DLSVASTYFLVRLLQDKTGDFMSTIITSCQTAVSKLLDTCFEA 661 Query 635 FKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSII 694 + FL D + + A V ++ V+ L+NK + L + Sbjct 662 TEATFNFLLDLAGLFRIFLRNAYVYTSQGFVVVNGKVSTLVKQVLDLLNKGMQLLHTKVS 721 Query 695 IGGAKLKA-LNLGETFVTHSKGLYRKCVKSR-----EETGLLMPLKAPKEIIFLEGETLP 748 G+ + A + G + G Y CV ++ ++ +++P + K+ + L T Sbjct 722 WAGSNISAVIYSGRESLIFPSGTYY-CVTTKAKSVQQDLDVILPGEFSKKQLGLLQPTDN 780 Query 749 TEVLT-----EEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKY--CA 801 + ++ V G L+ + + +VG V I+ + + K+ + + Sbjct 781 STTVSVTVSSNMVETVVGQLEQTNMHSPDV----IVGDYVIISEKLFVRSKEEDGFAFYP 836 Query 802 LAPNMMVTNNTFTLKGGAP-TKVTFGDDTVIEVQGYKSVNITFELDERIDKVL-NEKCSA 859 N F LKGGAP KV FG D V EV +SV + + + +D +L + Sbjct 837 ACTNGHAVPTLFRLKGGAPVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRT 896 Query 860 YTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASH 919 + V+ + EFA VV + V L + + DLD++ A Y F+ G+ +S Sbjct 897 FVVDKSLSIEEFADVVKEQVSDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSST 956 Query 920 MYCSFYPPDEDEEEGD------------CEEEEFEPSTQYEYGTEDDY------QGKPL- 960 M S +P + DEE + C E + DD + PL Sbjct 957 MIFSLHPVECDEECSEVEASDLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLD 1016 Query 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQL-------- 1012 E + ++Q E + E ++D +Q + +T + VEV PQ+ Sbjct 1017 EAEDVTESVQEEAQPVEVPVEDIAQVVIADT----LQETPVVSDTVEVPPQVVKLPSEPQ 1072 Query 1013 -----------------------EMELTPVVQTIEVNSFS--GYLKLTDNVYIKNADIVE 1047 ++ + + V+ S + +T+ V I D ++ Sbjct 1073 TIQPEVKEVAPVYEADTEQTQSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQ 1132 Query 1048 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 1107 AK +V+VNAAN +LKHGGG+AGA+N A+ A+Q ESD+YI GPL+VG S +L G Sbjct 1133 VAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQG 1192 Query 1108 HNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVD 1167 H+LAK+ LHVVGP+ +D+ LL Y+ N + +++ PL+SAGIFG P S + Sbjct 1193 HSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIR 1252 Query 1168 TVRTNVYLAVFDKNLYDKL 1186 +T V + V +++Y L Sbjct 1253 EAKTRVLVVVNSQDVYKSL 1271 >sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus HKU4 OX=694007 GN=1a PE=1 SV=1 Length=4434 Score = 3744 bits (9710), Expect = 0.0, Method: Composition-based stats. Identities = 1208/3262 (37%), Positives = 1796/3262 (55%), Gaps = 142/3262 (4%) Query 1259 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 1312 I G ++ S V + ++ + P VGD V+ +G A VV P + + Sbjct 1198 IAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAAL 1257 Query 1313 LAKALRKVPTDN-YITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIISNE 1363 L + + +T G+ Y + T + I ++ + Sbjct 1258 LKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPS 1317 Query 1364 KQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFY 1423 K + L R + A+ +C E A V ++ K + VD G +Y Sbjct 1318 KPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYY 1376 Query 1424 FYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAV 1483 Y+++ + +I N + + MP GYVTHGL+L ++ Y+R +KVP ++S + + Sbjct 1377 LYSARDALTDVIAAANGCS-GICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQI 1435 Query 1484 TAYNGYLTSSSKTPEEHFIETISLAGSYKDWSY-SGQSTQLGI---EFLKRGDKSVYYTS 1539 N + + +TPE FI ++ G Y W SG + + L +++ Y Sbjct 1436 PIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYAD 1493 Query 1540 NPTTFHLDGEVITFDNLKTLLSLREVR-----TIKVFTTVDNINLHTQVVDMSMTYGQQF 1594 N + + F +L+ + R I+V T+D +N T +++ + T+ +Q Sbjct 1494 NKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQL 1553 Query 1595 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD-TLRVEAFEYYHTTDPSFLGRYMSALNHT 1653 G T+ G D++ P G++ +V N + +V EYY T+D +FL RY S Sbjct 1554 GATFYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLV 1613 Query 1654 KKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEAANFCA 1712 ++WK+ +G+ S+K ++ NCY+ ++ + + ++KF PALQ+AY R + G+ +F A Sbjct 1614 QQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLA 1673 Query 1713 LILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYM 1771 LI+AY + T D + + L A L S K V C CG + G+ A +Y Sbjct 1674 LIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYA 1733 Query 1772 GTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHG--TFTCASEYTG 1829 G S E+ + C CG + LV+ +P++++S + + + G Sbjct 1734 GVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQG 1793 Query 1830 -NYQCGHYKHITSKETL-YCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGV 1887 GHY HI K+ L Y D LTK+S+ K +T V+Y YT V Y LDGV Sbjct 1794 VETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGV 1853 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQP-IDLVPNQPYPNASFDNFKFVCDNIKFADD-----L 1941 E++P L NYY KD Y+T +P I P P + + N V + D Sbjct 1854 TKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFF 1913 Query 1942 NQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATN 1999 N L G+ KP S++L + P+ +GDV+ ++ +Y P +KKG L KPI+W N + Sbjct 1914 NDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCD 1973 Query 2000 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 2059 A KPN +R L+ P+ N + VL+ +Q + E PV ++V P + Sbjct 1974 SALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLV-----EHNVPVVDDV---PITTR 2025 Query 2060 DVLECNVKTTE---VVGDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSR 2115 ++E K V G+ N + + + +G T+L A YVD N+ + + N S Sbjct 2026 KLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSS 2085 Query 2116 VLGLKTLATHGLAAVNSVPWDT----IANYAKPFLNKVVSTTTNIVTRCLNRVCTNY--- 2168 + L T+ + L V + T + A T T + Sbjct 2086 LFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKF 2145 Query 2169 -------------MPYFFTLLLQLCTFTRSTNSRIKAS---MPTTIAKNTVKSVGKFCLE 2212 + F L + I S + N VK G Sbjct 2146 VVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYY 2205 Query 2213 ASFNYLKSPNFSKLINI-------------IIWFLLLSVCLGSLIYSTAALGVLM----- 2254 K ++ + + I +L + L S + A G+L Sbjct 2206 MLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEV 2265 Query 2255 -SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITIS 2312 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+ Sbjct 2266 RSYLGIRTLCDGLVVEYRN-TSFDVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHIT 2324 Query 2313 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIIN 2370 S+ ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + Sbjct 2325 SYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFF 2384 Query 2371 LVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGV 2430 LV P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G Sbjct 2385 LVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGT 2444 Query 2431 RRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYI 2490 +R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y Sbjct 2445 KRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYY 2504 Query 2491 VDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPINVIVFDGK 2546 VDSV VK+ + L++++ G YER+ L +F NL+ L+ G N +++D Sbjct 2505 VDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTN 2564 Query 2547 SKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPM 2606 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V Sbjct 2565 DRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSR 2624 Query 2607 EKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEV 2665 +KL+ L+ TA + + NVL TF AAR V+SDVET VV+ L+ +H++DI++ Sbjct 2625 DKLEKLINTARDCVRRGDDFQNVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQL 2684 Query 2666 TGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQL 2725 T + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ Sbjct 2685 TTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSF 2744 Query 2726 RKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL-KGGKIVNNWL--------KQLIKV 2776 ++QIR A +K N+PF+LT + R N+++ K + K +WL K + Sbjct 2745 KRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATKIVGGAPSWLLRVRDLTVKGYCIL 2804 Query 2777 TLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDT 2836 TL VA + + P + ++ I+ YK I+ G+ RDIA D CFANK+ F Sbjct 2805 TLFVFTVAVLSWFCLPSYSIATVNFNDDRILTYKVIENGIVRDIAPNDVCFANKYGHFSK 2864 Query 2837 WFSQ-RGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNI 2895 WF++ GG Y N CP+ AVI G V +P + + F+ RVF A N+ Sbjct 2865 WFNENHGGVYRNSMDCPITIAVIAGVAGARVANVPANLAWV-GKQIVLFVSRVF-ANTNV 2922 Query 2896 CYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYV 2955 C+TP I Y F+ S CVL++ECT+F+DA G P+CYD VL G+ +Y ++P RY Sbjct 2923 CFTPINEIPYDTFSDSGCVLSSECTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRYD 2982 Query 2956 LMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSL 3014 + D I+FP +E ++R+ T ++YCR G+CE S AGVC+ST+G W L N Y + Sbjct 2983 MYDSDMYIKFPEVIVESTLRITKTLATQYCRFGSCEESAAGVCISTNGSWALYNQNYSTR 3042 Query 3015 PGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEY 3074 PG++CG D +++ + L QP+ +S S+ G ++ + +T YY + +RA +Y Sbjct 3043 PGIYCGDDYFDIVRRLAISLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADY 3102 Query 3075 SHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTP 3134 + + L++ LC L Y+ +Y Y TFYLT + +F+ HI W VMF Sbjct 3103 TQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGA 3162 Query 3135 LVPFWITIAYIICISTKHFYWFFSNYLKRRV--VFNGVSFSTFEEAALCTFLLNKEMYLK 3192 +VP W+ +Y + + +H +W + + K+ V +G +F++AA F++ K+ Y+ Sbjct 3163 VVPIWMLASYTVGVMLRHLFWVLAYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYVA 3222 Query 3193 LRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQP 3252 LR+ + + RYL+L+NKYKY+SGAMDT SYREA HL KAL +S +GSD+LYQP Sbjct 3223 LRNAI--TQDSFVRYLSLFNKYKYYSGAMDTASYREACAAHLCKALQTYSETGSDILYQP 3280 Query 3253 PQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDM 3312 P S+TS+VLQSG KM+ PSG VE C+VQVTCG+ TLNGLWLD+ V+CPRH++C ++ + Sbjct 3281 PNCSVTSSVLQSGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQL 3340 Query 3313 LNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRI 3369 +PNY+ LLI K+NH+F+VQ LRV+ HSM +LKL VD ANP TP Y F + Sbjct 3341 TDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTV 3400 Query 3370 QPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHME 3429 +PG +FSVLACYNG P+GV+ +R N TIKGSFL GSCGSVG+ + ++F YMH ME Sbjct 3401 KPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQME 3460 Query 3430 LPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTT 3489 L G H G+ +G YG F D+QT Q TD T+NV+AWLYAAV+NG +WF+ Sbjct 3461 LSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVG 3520 Query 3490 LNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSAL 3549 + +N A+ + + L+ +TG++V M A+++ L G G+TILG + Sbjct 3521 IVTYNEWALSNQFTEFVG--TQSIDMLAHRTGVSVEQMLAAIQSL-HAGFQGKTILGQST 3577 Query 3550 LEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYEN 3609 LEDEFTP DV Q GV QS VKR G HWL+ T + + + ++Q T+++++ +L+E Sbjct 3578 LEDEFTPDDVNMQVMGVVMQSGVKRISYGFIHWLISTFVLAYVSVMQLTKFTMWTYLFET 3637 Query 3610 AFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMT 3665 ++ A M VKHKH F+ LFLLP + Y N+VY P +S ++ + Sbjct 3638 IPTQMTPLLLGFMACVMFTVKHKHTFMSLFLLPVALCLTYANIVYEPQTLISSTLIAVAN 3697 Query 3666 WLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGN 3725 WL + D +Y S +L ++ R + L + + Y G+ Sbjct 3698 WLTPTSVYMRTTHF-DFGLYISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGD 3756 Query 3726 ALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCF 3785 I+ I ++TS+Y+ V + LA+ I + Y P ++ ++L+Y Sbjct 3757 H-SSPITYLMFITTLTSDYTITVFATVNLAKFISGLVFFYAPHLGFILPEVKLVLLIYLG 3815 Query 3786 LGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLL 3845 LGY CT YFG+F LLN R+ LGVYDY VSTQEFR++ GL P+NS +A LN KLL Sbjct 3816 LGYMCTMYFGVFSLLNLKLRVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLL 3875 Query 3846 GVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTT 3905 G+GG PCIKVATVQSK++D+KCTSVVLL+VLQQL +ES+SK W+ CV+LHN+IL A D T Sbjct 3876 GIGGTPCIKVATVQSKLTDLKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPT 3935 Query 3906 EAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYE 3965 EAFE+ V L + L+S VD++ L ++ +N + LQA +EFS L +YA TAQ +Y+ Sbjct 3936 EAFERFVCLFATLMSFSANVDLDALANDLFENSSVLQATLTEFSHLATYAELETAQSSYQ 3995 Query 3966 QAVANGD-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAK 4024 +A+ +GD S VLK L+K++NVAK+ +++D A+ RKLE+MA+QAMT MYKQAR+EDK+AK Sbjct 3996 KALNSGDASPQVLKALQKAVNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAK 4055 Query 4025 VTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTC 4084 + SAMQTMLF M++KLDND LN +I NAR+GCVPL+I+PL + KL VVIPD + + Sbjct 4056 IVSAMQTMLFGMIKKLDNDVLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVV 4115 Query 4085 DGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR-ANSAVKLQNNE 4143 + + +YA +LW+I + + D+++V+ +++ ++ + +L WPL++ R ++SAVKLQNNE Sbjct 4116 NWPSVSYAGSLWDITVINNVDNEVVKPTDV-VETNESLTWPLVIECSRSSSSAVKLQNNE 4174 Query 4144 LSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTG 4203 + P L+ M AG Q C + +A+AYY +G R V+ LLS+ LKWA+ DG Sbjct 4175 IHPKGLKTMVITAGVDQVNC-NSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKDG-- 4231 Query 4204 TIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPAN 4263 I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQAG TE +N Sbjct 4232 FINIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASN 4291 Query 4264 STVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGG 4323 STVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PEA DQE++GG Sbjct 4292 STVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGG 4351 Query 4324 ASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSC 4383 AS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC W GYGC+C Sbjct 4352 ASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGCNC 4410 Query 4384 DQLREPMLQSADAQSFLNGFAV 4405 D LR + + +FLN V Sbjct 4411 DALRNNTVPQSKDTNFLNESGV 4432 Score = 1031 bits (2665), Expect = 0.0, Method: Composition-based stats. Identities = 318/1335 (24%), Positives = 546/1335 (41%), Gaps = 194/1335 (15%) Query 8 FNEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEVLSEARQHLKD-GTCGLVEVE-KGV 60 +NEK HV ++P+ D+ L F D E ++ LK+ G V + + Sbjct 21 YNEKRSDHVACTVPLCDTDDMACKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRA 79 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGR-----SGETLGVLVPHVGEIP 115 + L P V++ H +V +A + + + + LG+ P+ + Sbjct 80 MKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDQVGAAMMRTTLNAKPLGMFFPYDSSLE 139 Query 116 VAYRKVLLRKNGNKGAGGHSYGADLKS---FDLGDELGTDPYEDFQENWNTKHSSGVTRE 172 LLRKNG G D K ++ D+L DP + +N Sbjct 140 TGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------ 187 Query 173 LMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKA--SCTLSEQLDFIDTKRGVYC 230 L+++L GG +D CG +G P+ ++A+ G + + +D+ R + Sbjct 188 LLKKLIGGDCIP-IDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDSDRFI-V 245 Query 231 CREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEK 290 + + + W R Y QT F I + D P F + S I + P ++ Sbjct 246 LNKKLYRVVWNVTRRNVPYPKQTAFTIVSVVQCDD-KDSVPEHTFTIGSQILMVSP-LKA 303 Query 291 KKLDGFMGRIRSVYPVAS---PNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTE 347 F + R +Y + + S + C+ CG +W TG+ ++ CG Sbjct 304 TNNKNFNLKQRLLYTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGAN 363 Query 348 NLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TI 404 + + G +P+NA+ CP +N HS A+ +N K + GG+ T+ Sbjct 364 YSANDVDLQSSGLVPRNALFLANCPCANNGAC--SHSAAQVYNILDGKACVEVGGKSFTL 421 Query 405 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVN 460 FGG V++Y+GC + Y+VPRA + + + G G D ++E L+K + + Sbjct 422 TFGGVVYAYMGCCDGTMYFVPRAKSCVSRI-GDAIFTGCTGTWDKVVETANLFLEKAQRS 480 Query 461 INIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKK 518 +N F L E ++LA S +TS F E +++++ + N F VT G + Sbjct 481 LNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIR 537 Query 519 GAWNIGEQ----KSILSPLYAFAS--EAARVVRSIF---SRTLETAQN---SVRVLQKAA 566 A NIG +I +P AF E+ + V +I L++A + S + + Sbjct 538 DAINIGANGVCNATINAPFIAFTGLGESFKKVSAIPWKICSNLKSALDYYSSNIMFRVFP 597 Query 567 ITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGT----VYE 622 I +S + L+D T V +Y V++ + + GT Sbjct 598 YDIPCDVSNFVELLLDCGKLT--------VATSYF---VLRYLDEKFDTVLGTVSSACQT 646 Query 623 KLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLV 682 L L+ + F+ D +++ K + V A+ + VQ ++ Sbjct 647 ALSSFLNACVAASRATAGFINDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIM 706 Query 683 NKFLALCADSIIIGGAKLKALNL-GETFVTHSKGLYRKCVKSRE-----ETGLLMPLKAP 736 +K + L ++ G KL A+ G + + G Y C+ ++ + L++P Sbjct 707 SKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYF-CLSTKAKTLQGQMNLVLPGDYN 765 Query 737 KEIIFL-----EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLL 791 K+ + + +T+ + V + G L+P T+E + +VG V ++ + + Sbjct 766 KKTLGILDPVPNADTIDVNANSTVVDVVHGQLEP----TNEHGPSMIVGNYVLVSDKLFV 821 Query 792 EIKDTEKYCALAPNMMVTNNTFTLKGGAP-TKVTFGDDTVIEVQGYKSVNITFELDERID 850 +D E Y L N V + F LKGG P KVTFGD +EV Y+SV+IT+++ +D Sbjct 822 RTEDEEFYP-LCTNGKVVSTLFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLD 880 Query 851 KVLNE-KCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFD 909 +L+ K + +TVE V +F V+ D V+ L P+ G D++++ Y+++ Sbjct 881 ALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYN 940 Query 910 ESGEFKLASHMYCSFYP--------------------PDEDEEEGDCEE----------- 938 + G+ +S+M S P P D+EE Sbjct 941 QDGDCAWSSNMTFSINPVEDVEEVEEFIEDDYLSDELPIADDEEAWARAVEEVMPLDDIL 1000 Query 939 ------------EEFEPSTQYEYGT-----------------------EDDYQGKPLEFG 963 E S + E E+D KP+ Sbjct 1001 VAEIELEEDPPLETALESVEAEVVETAEAQEPSVESIDSTPSTSTVVGENDLSVKPMSRV 1060 Query 964 ATSAALQPEEEQEEDWLDDDSQQTV------------------GQQDGSEDNQT------ 999 A + + E D V QD + +NQ Sbjct 1061 AETDDVLELETAVVGGPVSDVTAIVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVSDL 1120 Query 1000 ------TTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVK 1053 + + VQP+ +++ ++ S + + ++V + D ++ A + Sbjct 1121 QGNELLCSETKVEIVQPRQDLKPRRSRKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLP 1180 Query 1054 PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH 1113 ++VNAAN +LKHGGG+AG +NKA+ +Q ESD+YI+ NGPL VG S +L GH LA Sbjct 1181 KCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADA 1240 Query 1114 CLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNV 1173 LHVVGP+ ED LLK Y+ FN+H +++ PL+SAGIF DP S + V T Sbjct 1241 ILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLLANVTTTT 1300 Query 1174 YLAVFDKNLYDKLVS 1188 Y+ V ++++Y+ L + Sbjct 1301 YVVVNNEDIYNTLAT 1315 >sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 133/2005 OX=389230 GN=1a PE=3 SV=1 Length=4441 Score = 3742 bits (9704), Expect = 0.0, Method: Composition-based stats. Identities = 1205/3262 (37%), Positives = 1793/3262 (55%), Gaps = 142/3262 (4%) Query 1259 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 1312 I G ++ S V + ++ P VGD V+ +G A VV P + + Sbjct 1205 IAGAINKASGGDVQEESDEYISNSGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAAL 1264 Query 1313 LAKALRKVPTDN-YITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIISNE 1363 L + + +T G+ Y + T + I ++ + Sbjct 1265 LKRCYKTFNKHTIVVTPLISSGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPS 1324 Query 1364 KQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFY 1423 K + L R + A+ +C E A V ++ K + VD G +Y Sbjct 1325 KPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYY 1383 Query 1424 FYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAV 1483 Y+++ + +I N + MP GYVTHGL+L ++ Y+R +KVP ++S + + Sbjct 1384 LYSARDALTDVIAAANGC-PGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQI 1442 Query 1484 TAYNGYLTSSSKTPEEHFIETISLAGSYKDWSY-SGQSTQLGI---EFLKRGDKSVYYTS 1539 N + + +TPE FI ++ G Y W SG + + L +++ Y Sbjct 1443 PIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYAD 1500 Query 1540 NPTTFHLDGEVITFDNLKTLLSLREVR-----TIKVFTTVDNINLHTQVVDMSMTYGQQF 1594 N + + F +L+ + R I+V T+D +N T +++ + T+ +Q Sbjct 1501 NKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDATTFRKQL 1560 Query 1595 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD-TLRVEAFEYYHTTDPSFLGRYMSALNHT 1653 G T+ G D++ P G++ +V N + V EYY T+D +FL RY S Sbjct 1561 GATFYKGVDISDALPTVKMGGESLFVADNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLV 1620 Query 1654 KKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEAANFCA 1712 ++WK+ +G+ S+K ++ NCY+ ++ + + ++KF PALQ+AY R + G+ +F A Sbjct 1621 QQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLA 1680 Query 1713 LILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYM 1771 LI+AY + T D + + L A L S K V C CG + G+ A +Y Sbjct 1681 LIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYA 1740 Query 1772 GTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHG--TFTCASEYTG 1829 G S E+ + C CG + LV+ +P++++S + + + G Sbjct 1741 GVNSMEELQSVFNETCVCGSVKHRQLVEHSTPWLLVSGLNEVKVSTSTDPVYRAFNVFQG 1800 Query 1830 -NYQCGHYKHITSKETL-YCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGV 1887 GHY H+ K+ L Y D LTK+S+ K +T V+Y + YT V Y LDGV Sbjct 1801 VETSVGHYVHVRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGV 1860 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQP-IDLVPNQPYPNASFDNFKFVCDNIKFADD-----L 1941 E++P L NYY KD Y+T +P I P P + + N V + D Sbjct 1861 TKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFF 1920 Query 1942 NQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATN 1999 N L G+ KP S++L + P+ +GDV+ ++ +Y P +KKG L KPI+W N + Sbjct 1921 NDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCD 1980 Query 2000 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 2059 A KPN +R L+ P+ N + VL+ +Q + E PV E+V + Sbjct 1981 SALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLI-----EPNVPVVEDVS---ITTR 2032 Query 2060 DVLECNVKTTE---VVGDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSR 2115 ++E K V G+ N + + + +G T+L A YVD N+ + + N S Sbjct 2033 KLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSS 2092 Query 2116 VLGLKTLATHGLAAVNSVPWDT----IANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPY 2171 + L T+ + L V + T + A T T ++ + Sbjct 2093 LFKLHTVESGDLQIVANGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRSFCKF 2152 Query 2172 FFTL----------------LLQLCTFTRSTNSRIKAS---MPTTIAKNTVKSVGKFCLE 2212 + + S + N VK G Sbjct 2153 VVNYGVLQNMFLFLKMLFFLPFNYLWPKKQPTVDVGVSGLRTAGVVTTNIVKQCGTAAYY 2212 Query 2213 ASFNYLKSPNFSKLINI-------------IIWFLLLSVCLGSLIYSTAALGVLM----- 2254 K ++ + + I ++ + L S + A G+L Sbjct 2213 MLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVIFNQVLSSDVMLEDATGILAMYKEV 2272 Query 2255 -SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITIS 2312 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+ Sbjct 2273 RSYLGIRTLCDGLAVEYRN-TSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHIT 2331 Query 2313 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIIN 2370 S+ ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + Sbjct 2332 SYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFF 2391 Query 2371 LVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGV 2430 LV P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G Sbjct 2392 LVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGT 2451 Query 2431 RRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYI 2490 +R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y Sbjct 2452 KRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYY 2511 Query 2491 VDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPINVIVFDGK 2546 VDSV VK+ + L++++ G YER+ L +F NL+ L+ G N +++D Sbjct 2512 VDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTN 2571 Query 2547 SKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPM 2606 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V Sbjct 2572 DRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSR 2631 Query 2607 EKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEV 2665 +KL+ L+ TA + + VL TF AAR V+SDVET VV+ L+ +H++DI++ Sbjct 2632 DKLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQL 2691 Query 2666 TGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQL 2725 T + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ Sbjct 2692 TTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSF 2751 Query 2726 RKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL-KGGKIVNNWL--------KQLIKV 2776 ++QIR A +K N+PF+LT + R N+++ K + K +WL K + Sbjct 2752 KRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATKIVGGAPSWLLRVRDLTVKGYCIL 2811 Query 2777 TLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDT 2836 TL VA + + P + ++ I+ YK I+ G+ RDIA D CFANK+ F Sbjct 2812 TLFVFTVAVLSWFCLPSYSIATVNFNDDRILTYKVIENGIVRDIAPNDACFANKYGHFSK 2871 Query 2837 WFSQ-RGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNI 2895 WF++ GG Y N CP+ AVI G V +P T+ + F+ RVF A N+ Sbjct 2872 WFNENHGGVYRNSVDCPITIAVIAGVAGARVANVPATLAWV-GRQIVLFVSRVF-ANTNV 2929 Query 2896 CYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYV 2955 C+TP+ I Y F+ S CVL++ECT+F+DA G P+CYD VL G+ +Y ++P RY Sbjct 2930 CFTPTNEIPYDTFSDSGCVLSSECTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRYD 2989 Query 2956 LMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSL 3014 + D I+FP E ++R+ T ++YCR G+CE S AGVC+ST+G W L N Y + Sbjct 2990 MYDSDMYIKFPEVIFESTLRITKTLATQYCRFGSCEESAAGVCISTNGSWALYNQNYSTR 3049 Query 3015 PGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEY 3074 PG++CG D +++ + L QP+ +S S+ G ++ + +T YY + +RA +Y Sbjct 3050 PGIYCGDDYFDIVRRLAVSLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADY 3109 Query 3075 SHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTP 3134 + + L++ LC L Y+ +Y Y TFYLT + +F+ HI W VMF Sbjct 3110 TQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGT 3169 Query 3135 LVPFWITIAYIICISTKHFYWFFSNYLKRRV--VFNGVSFSTFEEAALCTFLLNKEMYLK 3192 +VP W+ +Y + + +H +W + + K+ V +G +F++AA F++ K+ Y+ Sbjct 3170 VVPIWMLASYTVGVMLRHLFWVLAYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYVA 3229 Query 3193 LRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQP 3252 LR+ + + RYL+L+NKYKY+SGAMDT SYREA HL KAL +S +GSD+LYQP Sbjct 3230 LRNAI--TQDSFVRYLSLFNKYKYYSGAMDTASYREACAAHLCKALQTYSETGSDILYQP 3287 Query 3253 PQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDM 3312 P S+TS+VLQSG KM+ PSG VE C+VQVTCG+ TLNGLWLD+ V+CPRH++C ++ + Sbjct 3288 PNCSVTSSVLQSGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQL 3347 Query 3313 LNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRI 3369 +PNY+ LLI K+NH+F+VQ LRV+ HSM +LKL VD ANP TP Y F + Sbjct 3348 TDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTV 3407 Query 3370 QPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHME 3429 +PG +FSVLACYNG P+GV+ +R N TIKGSFL GSCGSVG+ + ++F YMH ME Sbjct 3408 KPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVLNFVYMHQME 3467 Query 3430 LPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTT 3489 L G H G+ +G YG F D+QT Q TD T+NV+AWLYAAV+NG +WF+ Sbjct 3468 LSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVG 3527 Query 3490 LNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSAL 3549 + +N A+ + + L+ +TG++V M A+++ L G G+TILG + Sbjct 3528 IVTYNEWALSNQFTEFVG--TQSIDMLAHRTGVSVEQMLAAIQSL-HAGFQGKTILGQST 3584 Query 3550 LEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYEN 3609 LEDEFTP DV Q GV QS VKR G HWL+ T++ + + ++Q T+++++ +L+E Sbjct 3585 LEDEFTPDDVNMQVMGVVMQSGVKRISYGFMHWLMSTLVLAYVSVMQLTKFTMWTYLFET 3644 Query 3610 AFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMT 3665 + A M VKHKH FL LFLLP + Y N+VY P +S ++ + Sbjct 3645 IPTQMTPLLFGFMACVMFTVKHKHTFLSLFLLPVALCLTYANIVYEPQTLVSSTLIAVAN 3704 Query 3666 WLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGN 3725 WL + L D +Y S +L ++ R + L + + Y G+ Sbjct 3705 WLTPTSVYMRTTHL-DFGLYISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGD 3763 Query 3726 ALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCF 3785 I+ I ++TS+Y+ V + LA+ I + Y P ++ ++L+Y Sbjct 3764 H-SSPITYLMFITTLTSDYTITVFATVNLAKFISGLVFLYAPHLGFILPEVKLVLLIYLC 3822 Query 3786 LGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLL 3845 LGY CT YFG+F LLN R+ LGVYDY VSTQEFR++ GL P+NS +A LN KLL Sbjct 3823 LGYMCTMYFGVFSLLNLKLRVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLL 3882 Query 3846 GVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTT 3905 G+GG PCIKVATVQSK++D+KCTSVVLL+VLQQL +ES+SK W+ CV+LHN+IL A D T Sbjct 3883 GIGGTPCIKVATVQSKLTDLKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPT 3942 Query 3906 EAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYE 3965 EAFE+ V L + L+S VD++ L ++ +N + LQA +EFS L +YA TAQ +Y+ Sbjct 3943 EAFERFVCLFATLMSFSANVDLDALANDLFENSSVLQATLTEFSHLATYAELETAQSSYQ 4002 Query 3966 QAVANGD-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAK 4024 +A+ +GD S VLK L+K++NVAK+ +++D A+ RKLE+MA+QAMT MYKQAR+EDK+AK Sbjct 4003 KALNSGDASPQVLKALQKAVNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAK 4062 Query 4025 VTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTC 4084 + SAMQTMLF M++KLDND LN +I NAR+GCVPL+I+PL + KL VVIPD + + Sbjct 4063 IVSAMQTMLFGMIKKLDNDVLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVV 4122 Query 4085 DGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRA-NSAVKLQNNE 4143 + + +YA +LW++ + + D+++V+ +++ ++ + +L WPL++ RA +SAVKLQNNE Sbjct 4123 NWPSVSYAGSLWDVTVINNVDNEVVKPTDV-VETNESLTWPLVIECSRASSSAVKLQNNE 4181 Query 4144 LSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTG 4203 + P L+ M AG Q C+ +A+AYY +G R V+ LLS+ LKWA+ DG Sbjct 4182 IHPKGLKTMVVTAGIDQVNCS-SSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKDG-- 4238 Query 4204 TIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPAN 4263 I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQAG TE +N Sbjct 4239 FINIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASN 4298 Query 4264 STVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGG 4323 STVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PEA DQE++GG Sbjct 4299 STVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGG 4358 Query 4324 ASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSC 4383 AS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC W GYGC+C Sbjct 4359 ASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGCNC 4417 Query 4384 DQLREPMLQSADAQSFLNGFAV 4405 D LR + + +FLN V Sbjct 4418 DALRNNTVPQSKDTNFLNESGV 4439 Score = 1026 bits (2652), Expect = 0.0, Method: Composition-based stats. Identities = 316/1342 (24%), Positives = 542/1342 (40%), Gaps = 201/1342 (15%) Query 8 FNEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEVLSEARQHLKD-GTCGLVEVE-KGV 60 +NEK HV ++P+ D+ L F D E ++ LK+ G V + + Sbjct 21 YNEKRSDHVACTVPLCDTEDMASKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRA 79 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETL-----GVLVPHVGEIP 115 + L P V++ H +V +A + + TL G+ P+ + Sbjct 80 MKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLNVKPLGMFFPYDSSLE 139 Query 116 VAYRKVLLRKNGNKGAGGHSYGADLKS---FDLGDELGTDPYEDFQENWNTKHSSGVTRE 172 LLRKNG G D K ++ D+L DP + +N Sbjct 140 TGEHTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------ 187 Query 173 LMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKA--SCTLSEQLDFIDTKRGVYC 230 L+++L GG VD CG +G P+ ++A+ G + + +D+ R + Sbjct 188 LLKKLIGGDCIP-VDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDSDRFI-V 245 Query 231 CREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEK 290 + + + W R Y QT F + + D P F + S I + P ++ Sbjct 246 LNKKLYRVVWNVTRRNVPYSKQTAFTVVSVIQCDD-KESVPEHTFTIGSQILMVSP-LKA 303 Query 291 KKLDGFMGRIR---SVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTE 347 F + R + Y + + + S + C+ CG +W TG+ ++ CG Sbjct 304 TNNKNFNLKQRLLHTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGAN 363 Query 348 NLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TI 404 + + G +P+NA+ CP +N H+ A+ ++ K + GG+ T+ Sbjct 364 YSANDVDLQSSGLVPKNALFLANCPCANNGAC--SHNAAQVYSILDGKACVEVGGKSFTL 421 Query 405 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVN 460 FGG V++Y+GC + Y+VPRA + + + G G D ++E L+K + + Sbjct 422 TFGGVVYAYMGCCDGTMYFVPRAKSCVSRI-GDAIFTGCTGTWDKVVETANLFLEKAQHS 480 Query 461 INIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKK 518 +N F L E ++LA S +TS F E +++++ + N F VT G + Sbjct 481 LNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIR 537 Query 519 GAWNIGE----QKSILSPLYAFA--SEAARVVRSIF---SRTLETAQN---SVRVLQKAA 566 A NIG +I +P AF E+ + V +I L++A + S + + Sbjct 538 DAINIGANGVCNATINAPFIAFTGLGESFKKVAAIPWKICSNLKSALDYYCSNIMFRVFP 597 Query 567 ITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGT----VYE 622 I ++ + L+D T V +Y V++ + + GT Sbjct 598 YDIPCDVNDFVELLLDCGKLT--------VATSYF---VLRYLDEKFDTVLGTVSNACQT 646 Query 623 KLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLV 682 L L+ + F+ D +++ K + V A+ + VQ ++ Sbjct 647 ALSSFLNACVAASRATAGFISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIM 706 Query 683 NKFLALCADSIIIGGAKLKALNL-GETFVTHSKGLYRKCVKSR-----EETGLLMPLKAP 736 +K + L ++ G KL A+ G + + G Y C+ ++ ++ L++P Sbjct 707 SKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYF-CLSTKAKTLQDQMNLVLPGDYN 765 Query 737 KEIIFL-----EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLL 791 K+ + + +T+ + V + G L+P T+E + +VG V ++ + + Sbjct 766 KKTLGILDPVPNADTIDVTANSTVVDVVHGQLEP----TNEHGPSMIVGNYVLVSDKLFV 821 Query 792 EIKDTEKYCALAPNMMVTNNTFTLKGGAP-TKVTFGDDTVIEVQGYKSVNITFELDERID 850 D E Y L N V + F LKGG P KVTFGD +EV Y+SV+IT+++ +D Sbjct 822 RTDDEEFYP-LCINGKVVSTLFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLD 880 Query 851 KVL-NEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFD 909 +L + K + +TVE V +F V+ D V+ L P+ G D++++ Y+++ Sbjct 881 ALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYN 940 Query 910 ESGEFKLASHMYCSFYP--------------------PDEDEEEGDCEE-EEFEPSTQYE 948 + G+ +S+M S P P D+EE EE P Sbjct 941 QDGDCAWSSNMTFSINPVEDVEEVEEFIEDDYLSDELPIADDEEAWTRAVEEVMPLDDIL 1000 Query 949 YGTEDDYQGKPLEFGATSA-------------ALQPEEEQEEDWLDDDSQQTVGQQDGSE 995 + + PLE S ++ + QE DS + Sbjct 1001 VAEIELEEDLPLETALESVEAEVGESISDELCVVETAKAQEPSVESTDSTPSTSTVVSEN 1060 Query 996 DNQTTTIQTIVEVQPQLEMELTPV---------------------VQTIEVNSFSGYLKL 1034 D + + E LE+E V Q V+S + Sbjct 1061 DLSVKPMSRVAETGDVLEVETAVVGGPVSDVTASVVTNDIVSVEQAQQCGVSSLPIQDEA 1120 Query 1035 TDN------------------------------------------------VYIKNADIV 1046 ++N V + D + Sbjct 1121 SENQVHQVPDLQCTSETKVEIVQPRQDLRPRRLRKSKVDLSKYKHTVINNSVTLVLGDAI 1180 Query 1047 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 1106 + A + V+VNAAN +LKHGGG+AGA+NKA+ +Q ESD+YI+ +GPL VG S +L Sbjct 1181 QIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISNSGPLHVGDSVLLK 1240 Query 1107 GHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCV 1166 G+ LA L VVGP+ ED LLK Y+ FN+H +++ PL+S+GIF DP S + Sbjct 1241 GYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGIFSVDPKVSFEYLL 1300 Query 1167 DTVRTNVYLAVFDKNLYDKLVS 1188 V T Y+ V ++++Y+ L + Sbjct 1301 ANVTTTTYVVVNNEDIYNTLAT 1322 >sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 3742 bits (9704), Expect = 0.0, Method: Composition-based stats. Identities = 1207/3258 (37%), Positives = 1795/3258 (55%), Gaps = 142/3258 (4%) Query 1259 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 1312 I G ++ S V + ++ + P VGD V+ +G A VV P + + Sbjct 1198 IAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAAL 1257 Query 1313 LAKALRKVPTDN-YITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIISNE 1363 L + + +T G+ Y + T + I ++ + Sbjct 1258 LKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPS 1317 Query 1364 KQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFY 1423 K + L R + A+ +C E A V ++ K + VD G +Y Sbjct 1318 KPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYY 1376 Query 1424 FYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAV 1483 Y+++ + +I N + + MP GYVTHGL+L ++ Y+R +KVP ++S + + Sbjct 1377 LYSARDALTDVIAAANGCS-GICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQI 1435 Query 1484 TAYNGYLTSSSKTPEEHFIETISLAGSYKDWSY-SGQSTQLGI---EFLKRGDKSVYYTS 1539 N + + +TPE FI ++ G Y W SG + + L +++ Y Sbjct 1436 PIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYAD 1493 Query 1540 NPTTFHLDGEVITFDNLKTLLSLREVR-----TIKVFTTVDNINLHTQVVDMSMTYGQQF 1594 N + + F +L+ + R I+V T+D +N T +++ + T+ +Q Sbjct 1494 NKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQL 1553 Query 1595 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD-TLRVEAFEYYHTTDPSFLGRYMSALNHT 1653 G T+ G D++ P G++ +V N + +V EYY T+D +FL RY S Sbjct 1554 GATFYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLV 1613 Query 1654 KKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEAANFCA 1712 ++WK+ +G+ S+K ++ NCY+ ++ + + ++KF PALQ+AY R + G+ +F A Sbjct 1614 QQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLA 1673 Query 1713 LILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYM 1771 LI+AY + T D + + L A L S K V C CG + G+ A +Y Sbjct 1674 LIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYA 1733 Query 1772 GTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHG--TFTCASEYTG 1829 G S E+ + C CG + LV+ +P++++S + + + G Sbjct 1734 GVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQG 1793 Query 1830 -NYQCGHYKHITSKETL-YCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGV 1887 GHY HI K+ L Y D LTK+S+ K +T V+Y YT V Y LDGV Sbjct 1794 VETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGV 1853 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQP-IDLVPNQPYPNASFDNFKFVCDNIKFADD-----L 1941 E++P L NYY KD Y+T +P I P P + + N V + D Sbjct 1854 TKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFF 1913 Query 1942 NQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATN 1999 N L G+ KP S++L + P+ +GDV+ ++ +Y P +KKG L KPI+W N + Sbjct 1914 NDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCD 1973 Query 2000 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 2059 A KPN +R L+ P+ N + VL+ +Q + E PV ++V P + Sbjct 1974 SALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLV-----EHNVPVVDDV---PITTR 2025 Query 2060 DVLECNVKTTE---VVGDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSR 2115 ++E K V G+ N + + + +G T+L A YVD N+ + + N S Sbjct 2026 KLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSS 2085 Query 2116 VLGLKTLATHGLAAVNSVPWDT----IANYAKPFLNKVVSTTTNIVTRCLNRVCTNY--- 2168 + L T+ + L V + T + A T T + Sbjct 2086 LFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKF 2145 Query 2169 -------------MPYFFTLLLQLCTFTRSTNSRIKAS---MPTTIAKNTVKSVGKFCLE 2212 + F L + I S + N VK G Sbjct 2146 VVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYY 2205 Query 2213 ASFNYLKSPNFSKLINI-------------IIWFLLLSVCLGSLIYSTAALGVLM----- 2254 K ++ + + I +L + L S + A G+L Sbjct 2206 MLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEV 2265 Query 2255 -SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITIS 2312 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+ Sbjct 2266 RSYLGIRTLCDGLVVEYRN-TSFDVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHIT 2324 Query 2313 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIIN 2370 S+ ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + Sbjct 2325 SYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFF 2384 Query 2371 LVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGV 2430 LV P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G Sbjct 2385 LVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGT 2444 Query 2431 RRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYI 2490 +R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y Sbjct 2445 KRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYY 2504 Query 2491 VDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPINVIVFDGK 2546 VDSV VK+ + L++++ G YER+ L +F NL+ L+ G N +++D Sbjct 2505 VDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTN 2564 Query 2547 SKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPM 2606 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V Sbjct 2565 DRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSR 2624 Query 2607 EKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEV 2665 +KL+ L+ TA + + NVL TF AAR V+SDVET VV+ L+ +H++DI++ Sbjct 2625 DKLEKLINTARDCVRRGDDFQNVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQL 2684 Query 2666 TGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQL 2725 T + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ Sbjct 2685 TTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSF 2744 Query 2726 RKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL-KGGKIVNNWL--------KQLIKV 2776 ++QIR A +K N+PF+LT + R N+++ K + K +WL K + Sbjct 2745 KRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATKIVGGAPSWLLRVRDLTVKGYCIL 2804 Query 2777 TLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDT 2836 TL VA + + P + ++ I+ YK I+ G+ RDIA D CFANK+ F Sbjct 2805 TLFVFTVAVLSWFCLPSYSIATVNFNDDRILTYKVIENGIVRDIAPNDVCFANKYGHFSK 2864 Query 2837 WFSQ-RGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNI 2895 WF++ GG Y N CP+ AVI G V +P + + F+ RVF A N+ Sbjct 2865 WFNENHGGVYRNSMDCPITIAVIAGVAGARVANVPANLAWV-GKQIVLFVSRVF-ANTNV 2922 Query 2896 CYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYV 2955 C+TP I Y F+ S CVL++ECT+F+DA G P+CYD VL G+ +Y ++P RY Sbjct 2923 CFTPINEIPYDTFSDSGCVLSSECTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRYD 2982 Query 2956 LMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSL 3014 + D I+FP +E ++R+ T ++YCR G+CE S AGVC+ST+G W L N Y + Sbjct 2983 MYDSDMYIKFPEVIVESTLRITKTLATQYCRFGSCEESAAGVCISTNGSWALYNQNYSTR 3042 Query 3015 PGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEY 3074 PG++CG D +++ + L QP+ +S S+ G ++ + +T YY + +RA +Y Sbjct 3043 PGIYCGDDYFDIVRRLAISLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADY 3102 Query 3075 SHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTP 3134 + + L++ LC L Y+ +Y Y TFYLT + +F+ HI W VMF Sbjct 3103 TQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGA 3162 Query 3135 LVPFWITIAYIICISTKHFYWFFSNYLKRRV--VFNGVSFSTFEEAALCTFLLNKEMYLK 3192 +VP W+ +Y + + +H +W + + K+ V +G +F++AA F++ K+ Y+ Sbjct 3163 VVPIWMLASYTVGVMLRHLFWVLAYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYVA 3222 Query 3193 LRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQP 3252 LR+ + + RYL+L+NKYKY+SGAMDT SYREA HL KAL +S +GSD+LYQP Sbjct 3223 LRNAI--TQDSFVRYLSLFNKYKYYSGAMDTASYREACAAHLCKALQTYSETGSDILYQP 3280 Query 3253 PQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDM 3312 P S+TS+VLQSG KM+ PSG VE C+VQVTCG+ TLNGLWLD+ V+CPRH++C ++ + Sbjct 3281 PNCSVTSSVLQSGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQL 3340 Query 3313 LNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRI 3369 +PNY+ LLI K+NH+F+VQ LRV+ HSM +LKL VD ANP TP Y F + Sbjct 3341 TDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTV 3400 Query 3370 QPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHME 3429 +PG +FSVLACYNG P+GV+ +R N TIKGSFL GSCGSVG+ + ++F YMH ME Sbjct 3401 KPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQME 3460 Query 3430 LPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTT 3489 L G H G+ +G YG F D+QT Q TD T+NV+AWLYAAV+NG +WF+ Sbjct 3461 LSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVG 3520 Query 3490 LNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSAL 3549 + +N A+ + + L+ +TG++V M A+++ L G G+TILG + Sbjct 3521 IVTYNEWALSNQFTEFVG--TQSIDMLAHRTGVSVEQMLAAIQSL-HAGFQGKTILGQST 3577 Query 3550 LEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYEN 3609 LEDEFTP DV Q GV QS VKR G HWL+ T + + + ++Q T+++++ +L+E Sbjct 3578 LEDEFTPDDVNMQVMGVVMQSGVKRISYGFIHWLISTFVLAYVSVMQLTKFTMWTYLFET 3637 Query 3610 AFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMT 3665 ++ A M VKHKH F+ LFLLP + Y N+VY P +S ++ + Sbjct 3638 IPTQMTPLLLGFMACVMFTVKHKHTFMSLFLLPVALCLTYANIVYEPQTLISSTLIAVAN 3697 Query 3666 WLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGN 3725 WL + D +Y S +L ++ R + L + + Y G+ Sbjct 3698 WLTPTSVYMRTTHF-DFGLYISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGD 3756 Query 3726 ALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCF 3785 I+ I ++TS+Y+ V + LA+ I + Y P ++ ++L+Y Sbjct 3757 H-SSPITYLMFITTLTSDYTITVFATVNLAKFISGLVFFYAPHLGFILPEVKLVLLIYLG 3815 Query 3786 LGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLL 3845 LGY CT YFG+F LLN R+ LGVYDY VSTQEFR++ GL P+NS +A LN KLL Sbjct 3816 LGYMCTMYFGVFSLLNLKLRVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLL 3875 Query 3846 GVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTT 3905 G+GG PCIKVATVQSK++D+KCTSVVLL+VLQQL +ES+SK W+ CV+LHN+IL A D T Sbjct 3876 GIGGTPCIKVATVQSKLTDLKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPT 3935 Query 3906 EAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYE 3965 EAFE+ V L + L+S VD++ L ++ +N + LQA +EFS L +YA TAQ +Y+ Sbjct 3936 EAFERFVCLFATLMSFSANVDLDALANDLFENSSVLQATLTEFSHLATYAELETAQSSYQ 3995 Query 3966 QAVANGD-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAK 4024 +A+ +GD S VLK L+K++NVAK+ +++D A+ RKLE+MA+QAMT MYKQAR+EDK+AK Sbjct 3996 KALNSGDASPQVLKALQKAVNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAK 4055 Query 4025 VTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTC 4084 + SAMQTMLF M++KLDND LN +I NAR+GCVPL+I+PL + KL VVIPD + + Sbjct 4056 IVSAMQTMLFGMIKKLDNDVLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVV 4115 Query 4085 DGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALR-ANSAVKLQNNE 4143 + + +YA +LW+I + + D+++V+ +++ ++ + +L WPL++ R ++SAVKLQNNE Sbjct 4116 NWPSVSYAGSLWDITVINNVDNEVVKPTDV-VETNESLTWPLVIECSRSSSSAVKLQNNE 4174 Query 4144 LSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTG 4203 + P L+ M AG Q C + +A+AYY +G R V+ LLS+ LKWA+ DG Sbjct 4175 IHPKGLKTMVITAGVDQVNC-NSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKDG-- 4231 Query 4204 TIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPAN 4263 I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQAG TE +N Sbjct 4232 FINIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASN 4291 Query 4264 STVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGG 4323 STVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PEA DQE++GG Sbjct 4292 STVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGG 4351 Query 4324 ASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSC 4383 AS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC W GYGC+C Sbjct 4352 ASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGCNC 4410 Query 4384 DQLREPMLQSADAQSFLN 4401 D LR + + +FLN Sbjct 4411 DALRNNTVPQSKDTNFLN 4428 Score = 1031 bits (2665), Expect = 0.0, Method: Composition-based stats. Identities = 318/1335 (24%), Positives = 546/1335 (41%), Gaps = 194/1335 (15%) Query 8 FNEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEVLSEARQHLKD-GTCGLVEVE-KGV 60 +NEK HV ++P+ D+ L F D E ++ LK+ G V + + Sbjct 21 YNEKRSDHVACTVPLCDTDDMACKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRA 79 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGR-----SGETLGVLVPHVGEIP 115 + L P V++ H +V +A + + + + LG+ P+ + Sbjct 80 MKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDQVGAAMMRTTLNAKPLGMFFPYDSSLE 139 Query 116 VAYRKVLLRKNGNKGAGGHSYGADLKS---FDLGDELGTDPYEDFQENWNTKHSSGVTRE 172 LLRKNG G D K ++ D+L DP + +N Sbjct 140 TGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------ 187 Query 173 LMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKA--SCTLSEQLDFIDTKRGVYC 230 L+++L GG +D CG +G P+ ++A+ G + + +D+ R + Sbjct 188 LLKKLIGGDCIP-IDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDSDRFI-V 245 Query 231 CREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEK 290 + + + W R Y QT F I + D P F + S I + P ++ Sbjct 246 LNKKLYRVVWNVTRRNVPYPKQTAFTIVSVVQCDD-KDSVPEHTFTIGSQILMVSP-LKA 303 Query 291 KKLDGFMGRIRSVYPVAS---PNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTE 347 F + R +Y + + S + C+ CG +W TG+ ++ CG Sbjct 304 TNNKNFNLKQRLLYTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGAN 363 Query 348 NLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TI 404 + + G +P+NA+ CP +N HS A+ +N K + GG+ T+ Sbjct 364 YSANDVDLQSSGLVPRNALFLANCPCANNGAC--SHSAAQVYNILDGKACVEVGGKSFTL 421 Query 405 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVN 460 FGG V++Y+GC + Y+VPRA + + + G G D ++E L+K + + Sbjct 422 TFGGVVYAYMGCCDGTMYFVPRAKSCVSRI-GDAIFTGCTGTWDKVVETANLFLEKAQRS 480 Query 461 INIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKK 518 +N F L E ++LA S +TS F E +++++ + N F VT G + Sbjct 481 LNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIR 537 Query 519 GAWNIGEQ----KSILSPLYAFAS--EAARVVRSIF---SRTLETAQN---SVRVLQKAA 566 A NIG +I +P AF E+ + V +I L++A + S + + Sbjct 538 DAINIGANGVCNATINAPFIAFTGLGESFKKVSAIPWKICSNLKSALDYYSSNIMFRVFP 597 Query 567 ITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGT----VYE 622 I +S + L+D T V +Y V++ + + GT Sbjct 598 YDIPCDVSNFVELLLDCGKLT--------VATSYF---VLRYLDEKFDTVLGTVSSACQT 646 Query 623 KLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLV 682 L L+ + F+ D +++ K + V A+ + VQ ++ Sbjct 647 ALSSFLNACVAASRATAGFINDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIM 706 Query 683 NKFLALCADSIIIGGAKLKALNL-GETFVTHSKGLYRKCVKSRE-----ETGLLMPLKAP 736 +K + L ++ G KL A+ G + + G Y C+ ++ + L++P Sbjct 707 SKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYF-CLSTKAKTLQGQMNLVLPGDYN 765 Query 737 KEIIFL-----EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLL 791 K+ + + +T+ + V + G L+P T+E + +VG V ++ + + Sbjct 766 KKTLGILDPVPNADTIDVNANSTVVDVVHGQLEP----TNEHGPSMIVGNYVLVSDKLFV 821 Query 792 EIKDTEKYCALAPNMMVTNNTFTLKGGAP-TKVTFGDDTVIEVQGYKSVNITFELDERID 850 +D E Y L N V + F LKGG P KVTFGD +EV Y+SV+IT+++ +D Sbjct 822 RTEDEEFYP-LCTNGKVVSTLFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLD 880 Query 851 KVLNE-KCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFD 909 +L+ K + +TVE V +F V+ D V+ L P+ G D++++ Y+++ Sbjct 881 ALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYN 940 Query 910 ESGEFKLASHMYCSFYP--------------------PDEDEEEGDCEE----------- 938 + G+ +S+M S P P D+EE Sbjct 941 QDGDCAWSSNMTFSINPVEDVEEVEEFIEDDYLSDELPIADDEEAWARAVEEVMPLDDIL 1000 Query 939 ------------EEFEPSTQYEYGT-----------------------EDDYQGKPLEFG 963 E S + E E+D KP+ Sbjct 1001 VAEIELEEDPPLETALESVEAEVVETAEAQEPSVESIDSTPSTSTVVGENDLSVKPMSRV 1060 Query 964 ATSAALQPEEEQEEDWLDDDSQQTV------------------GQQDGSEDNQT------ 999 A + + E D V QD + +NQ Sbjct 1061 AETDDVLELETAVVGGPVSDVTAIVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVSDL 1120 Query 1000 ------TTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVK 1053 + + VQP+ +++ ++ S + + ++V + D ++ A + Sbjct 1121 QGNELLCSETKVEIVQPRQDLKPRRSRKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLP 1180 Query 1054 PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKH 1113 ++VNAAN +LKHGGG+AG +NKA+ +Q ESD+YI+ NGPL VG S +L GH LA Sbjct 1181 KCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADA 1240 Query 1114 CLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNV 1173 LHVVGP+ ED LLK Y+ FN+H +++ PL+SAGIF DP S + V T Sbjct 1241 ILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLLANVTTTT 1300 Query 1174 YLAVFDKNLYDKLVS 1188 Y+ V ++++Y+ L + Sbjct 1301 YVVVNNEDIYNTLAT 1315 >sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 3740 bits (9699), Expect = 0.0, Method: Composition-based stats. Identities = 1204/3258 (37%), Positives = 1792/3258 (55%), Gaps = 142/3258 (4%) Query 1259 INGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLTA-----VVIPTKKAGGTTEM 1312 I G ++ S V + ++ P VGD V+ +G A VV P + + Sbjct 1205 IAGAINKASGGDVQEESDEYISNSGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAAL 1264 Query 1313 LAKALRKVPTDN-YITTYPGQGLNG--------YTVEEAKTVLKKCKSAFYILPSIISNE 1363 L + + +T G+ Y + T + I ++ + Sbjct 1265 LKRCYKTFNKHTIVVTPLISSGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPS 1324 Query 1364 KQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFY 1423 K + L R + A+ +C E A V ++ K + VD G +Y Sbjct 1325 KPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVD-GVSYY 1383 Query 1424 FYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAV 1483 Y+++ + +I N + MP GYVTHGL+L ++ Y+R +KVP ++S + + Sbjct 1384 LYSARDALTDVIAAANGC-PGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQI 1442 Query 1484 TAYNGYLTSSSKTPEEHFIETISLAGSYKDWSY-SGQSTQLGI---EFLKRGDKSVYYTS 1539 N + + +TPE FI ++ G Y W SG + + L +++ Y Sbjct 1443 PIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYAD 1500 Query 1540 NPTTFHLDGEVITFDNLKTLLSLREVR-----TIKVFTTVDNINLHTQVVDMSMTYGQQF 1594 N + + F +L+ + R I+V T+D +N T +++ + T+ +Q Sbjct 1501 NKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDATTFRKQL 1560 Query 1595 GPTYLDGADVTKIKPHNSHEGKTFYVLPNDD-TLRVEAFEYYHTTDPSFLGRYMSALNHT 1653 G T+ G D++ P G++ +V N + V EYY T+D +FL RY S Sbjct 1561 GATFYKGVDISDALPTVKMGGESLFVADNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLV 1620 Query 1654 KKWKYPQVNGLTSIKWADNNCYLATALLTLQQI-ELKFNPPALQDAYYRARAGEAANFCA 1712 ++WK+ +G+ S+K ++ NCY+ ++ + + ++KF PALQ+AY R + G+ +F A Sbjct 1621 QQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLA 1680 Query 1713 LILAYCNKTVGELGDVRETMSYLFQHANLD-SCKRVLNVVCKTCGQQQTTLKGVEAVMYM 1771 LI+AY + T D + + L A L S K V C CG + G+ A +Y Sbjct 1681 LIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYA 1740 Query 1772 GTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHG--TFTCASEYTG 1829 G S E+ + C CG + LV+ +P++++S + + + G Sbjct 1741 GVNSMEELQSVFNETCVCGSVKHRQLVEHSTPWLLVSGLNEVKVSTSTDPVYRAFNVFQG 1800 Query 1830 -NYQCGHYKHITSKETL-YCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGV 1887 GHY H+ K+ L Y D LTK+S+ K +T V+Y + YT V Y LDGV Sbjct 1801 VETSVGHYVHVRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGV 1860 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQP-IDLVPNQPYPNASFDNFKFVCDNIKFADD-----L 1941 E++P L NYY KD Y+T +P I P P + + N V + D Sbjct 1861 TKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFF 1920 Query 1942 NQLTGYK--KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATN 1999 N L G+ KP S++L + P+ +GDV+ ++ +Y P +KKG L KPI+W N + Sbjct 1921 NDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCD 1980 Query 2000 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 2059 A KPN +R L+ P+ N + VL+ +Q + E PV E+V + Sbjct 1981 SALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLI-----EPNVPVVEDVS---ITTR 2032 Query 2060 DVLECNVKTTE---VVGDIILKPANNSLKITEEVGHTDLMAAYVD-NSSLTIKKPNELSR 2115 ++E K V G+ N + + + +G T+L A YVD N+ + + N S Sbjct 2033 KLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSS 2092 Query 2116 VLGLKTLATHGLAAVNSVPWDT----IANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPY 2171 + L T+ + L V + T + A T T ++ + Sbjct 2093 LFKLHTVESGDLQIVANGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRSFCKF 2152 Query 2172 FFTL----------------LLQLCTFTRSTNSRIKAS---MPTTIAKNTVKSVGKFCLE 2212 + + S + N VK G Sbjct 2153 VVNYGVLQNMFLFLKMLFFLPFNYLWPKKQPTVDVGVSGLRTAGVVTTNIVKQCGTAAYY 2212 Query 2213 ASFNYLKSPNFSKLINI-------------IIWFLLLSVCLGSLIYSTAALGVLM----- 2254 K ++ + + I ++ + L S + A G+L Sbjct 2213 MLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVIFNQVLSSDVMLEDATGILAMYKEV 2272 Query 2255 -SNLGMPSYCTGYREGYLNSTNVTIATYCTG-SIPCSVCLSGLDSLDTYPSLETIQITIS 2312 S LG+ + C G Y N T+ + +C+ S+ C CL G DSL Y +L+ +Q I+ Sbjct 2273 RSYLGIRTLCDGLAVEYRN-TSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHIT 2331 Query 2313 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFA--VHFISNSWLMWLIIN 2370 S+ ++ E+FLAY+L+T F VL L Q FF+Y + V++ + ++++ + Sbjct 2332 SYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFF 2391 Query 2371 LVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGV 2430 LV P+ +VR+Y F A +++ K Y HV++GC + C++CYKRNR TRVE +TIV G Sbjct 2392 LVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGT 2451 Query 2431 RRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYI 2490 +R+FY+ ANGG +C HNWNCV CDT G+TFI EVA DL+ +R I PTDQS Y Sbjct 2452 KRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYY 2511 Query 2491 VDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANN----TKGSLPINVIVFDGK 2546 VDSV VK+ + L++++ G YER+ L +F NL+ L+ G N +++D Sbjct 2512 VDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTN 2571 Query 2547 SKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPM 2606 + +E+ A+SA VYYSQ++C+P+LL+D LV+ VGDS E+A+KM D+++N+F S F+V Sbjct 2572 DRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSR 2631 Query 2607 EKLKTLVATAEAELAKNVSLDNVLSTFISAAR-QGFVDSDVETKDVVECLKLSHQSDIEV 2665 +KL+ L+ TA + + VL TF AAR V+SDVET VV+ L+ +H++DI++ Sbjct 2632 DKLEKLINTARDCVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQL 2691 Query 2666 TGDSCNNYMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQL 2725 T + NNY+ Y K +++ DLG ID A +N ++ N A +WN D+M LS+ Sbjct 2692 TTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSF 2751 Query 2726 RKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL-KGGKIVNNWL--------KQLIKV 2776 ++QIR A +K N+PF+LT + R N+++ K + K +WL K + Sbjct 2752 KRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATKIVGGAPSWLLRVRDLTVKGYCIL 2811 Query 2777 TLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDT 2836 TL VA + + P + ++ I+ YK I+ G+ RDIA D CFANK+ F Sbjct 2812 TLFVFTVAVLSWFCLPSYSIATVNFNDDRILTYKVIENGIVRDIAPNDACFANKYGHFSK 2871 Query 2837 WFSQ-RGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNI 2895 WF++ GG Y N CP+ AVI G V +P T+ + F+ RVF A N+ Sbjct 2872 WFNENHGGVYRNSVDCPITIAVIAGVAGARVANVPATLAWV-GRQIVLFVSRVF-ANTNV 2929 Query 2896 CYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYV 2955 C+TP+ I Y F+ S CVL++ECT+F+DA G P+CYD VL G+ +Y ++P RY Sbjct 2930 CFTPTNEIPYDTFSDSGCVLSSECTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRYD 2989 Query 2956 LMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSL 3014 + D I+FP E ++R+ T ++YCR G+CE S AGVC+ST+G W L N Y + Sbjct 2990 MYDSDMYIKFPEVIFESTLRITKTLATQYCRFGSCEESAAGVCISTNGSWALYNQNYSTR 3049 Query 3015 PGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEY 3074 PG++CG D +++ + L QP+ +S S+ G ++ + +T YY + +RA +Y Sbjct 3050 PGIYCGDDYFDIVRRLAVSLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADY 3109 Query 3075 SHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTP 3134 + + L++ LC L Y+ +Y Y TFYLT + +F+ HI W VMF Sbjct 3110 TQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGT 3169 Query 3135 LVPFWITIAYIICISTKHFYWFFSNYLKRRV--VFNGVSFSTFEEAALCTFLLNKEMYLK 3192 +VP W+ +Y + + +H +W + + K+ V +G +F++AA F++ K+ Y+ Sbjct 3170 VVPIWMLASYTVGVMLRHLFWVLAYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYVA 3229 Query 3193 LRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQP 3252 LR+ + + RYL+L+NKYKY+SGAMDT SYREA HL KAL +S +GSD+LYQP Sbjct 3230 LRNAI--TQDSFVRYLSLFNKYKYYSGAMDTASYREACAAHLCKALQTYSETGSDILYQP 3287 Query 3253 PQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDM 3312 P S+TS+VLQSG KM+ PSG VE C+VQVTCG+ TLNGLWLD+ V+CPRH++C ++ + Sbjct 3288 PNCSVTSSVLQSGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQL 3347 Query 3313 LNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRI 3369 +PNY+ LLI K+NH+F+VQ LRV+ HSM +LKL VD ANP TP Y F + Sbjct 3348 TDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTV 3407 Query 3370 QPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHME 3429 +PG +FSVLACYNG P+GV+ +R N TIKGSFL GSCGSVG+ + ++F YMH ME Sbjct 3408 KPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVLNFVYMHQME 3467 Query 3430 LPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTT 3489 L G H G+ +G YG F D+QT Q TD T+NV+AWLYAAV+NG +WF+ Sbjct 3468 LSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVG 3527 Query 3490 LNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSAL 3549 + +N A+ + + L+ +TG++V M A+++ L G G+TILG + Sbjct 3528 IVTYNEWALSNQFTEFVG--TQSIDMLAHRTGVSVEQMLAAIQSL-HAGFQGKTILGQST 3584 Query 3550 LEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYEN 3609 LEDEFTP DV Q GV QS VKR G HWL+ T++ + + ++Q T+++++ +L+E Sbjct 3585 LEDEFTPDDVNMQVMGVVMQSGVKRISYGFMHWLMSTLVLAYVSVMQLTKFTMWTYLFET 3644 Query 3610 AFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMT 3665 + A M VKHKH FL LFLLP + Y N+VY P +S ++ + Sbjct 3645 IPTQMTPLLFGFMACVMFTVKHKHTFLSLFLLPVALCLTYANIVYEPQTLVSSTLIAVAN 3704 Query 3666 WLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGN 3725 WL + L D +Y S +L ++ R + L + + Y G+ Sbjct 3705 WLTPTSVYMRTTHL-DFGLYISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGD 3763 Query 3726 ALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCF 3785 I+ I ++TS+Y+ V + LA+ I + Y P ++ ++L+Y Sbjct 3764 H-SSPITYLMFITTLTSDYTITVFATVNLAKFISGLVFLYAPHLGFILPEVKLVLLIYLC 3822 Query 3786 LGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLL 3845 LGY CT YFG+F LLN R+ LGVYDY VSTQEFR++ GL P+NS +A LN KLL Sbjct 3823 LGYMCTMYFGVFSLLNLKLRVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLL 3882 Query 3846 GVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTT 3905 G+GG PCIKVATVQSK++D+KCTSVVLL+VLQQL +ES+SK W+ CV+LHN+IL A D T Sbjct 3883 GIGGTPCIKVATVQSKLTDLKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPT 3942 Query 3906 EAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYE 3965 EAFE+ V L + L+S VD++ L ++ +N + LQA +EFS L +YA TAQ +Y+ Sbjct 3943 EAFERFVCLFATLMSFSANVDLDALANDLFENSSVLQATLTEFSHLATYAELETAQSSYQ 4002 Query 3966 QAVANGD-SEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAK 4024 +A+ +GD S VLK L+K++NVAK+ +++D A+ RKLE+MA+QAMT MYKQAR+EDK+AK Sbjct 4003 KALNSGDASPQVLKALQKAVNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAK 4062 Query 4025 VTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTC 4084 + SAMQTMLF M++KLDND LN +I NAR+GCVPL+I+PL + KL VVIPD + + Sbjct 4063 IVSAMQTMLFGMIKKLDNDVLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVV 4122 Query 4085 DGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRA-NSAVKLQNNE 4143 + + +YA +LW++ + + D+++V+ +++ ++ + +L WPL++ RA +SAVKLQNNE Sbjct 4123 NWPSVSYAGSLWDVTVINNVDNEVVKPTDV-VETNESLTWPLVIECSRASSSAVKLQNNE 4181 Query 4144 LSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTG 4203 + P L+ M AG Q C+ +A+AYY +G R V+ LLS+ LKWA+ DG Sbjct 4182 IHPKGLKTMVVTAGIDQVNCS-SSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKDG-- 4238 Query 4204 TIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPAN 4263 I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQAG TE +N Sbjct 4239 FINIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASN 4298 Query 4264 STVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGG 4323 STVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PEA DQE++GG Sbjct 4299 STVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGG 4358 Query 4324 ASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSC 4383 AS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC W GYGC+C Sbjct 4359 ASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGCNC 4417 Query 4384 DQLREPMLQSADAQSFLN 4401 D LR + + +FLN Sbjct 4418 DALRNNTVPQSKDTNFLN 4435 Score = 1026 bits (2653), Expect = 0.0, Method: Composition-based stats. Identities = 316/1342 (24%), Positives = 542/1342 (40%), Gaps = 201/1342 (15%) Query 8 FNEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEVLSEARQHLKD-GTCGLVEVE-KGV 60 +NEK HV ++P+ D+ L F D E ++ LK+ G V + + Sbjct 21 YNEKRSDHVACTVPLCDTEDMASKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRA 79 Query 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETL-----GVLVPHVGEIP 115 + L P V++ H +V +A + + TL G+ P+ + Sbjct 80 MKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLNVKPLGMFFPYDSSLE 139 Query 116 VAYRKVLLRKNGNKGAGGHSYGADLKS---FDLGDELGTDPYEDFQENWNTKHSSGVTRE 172 LLRKNG G D K ++ D+L DP + +N Sbjct 140 TGEHTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------ 187 Query 173 LMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKA--SCTLSEQLDFIDTKRGVYC 230 L+++L GG VD CG +G P+ ++A+ G + + +D+ R + Sbjct 188 LLKKLIGGDCIP-VDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDSDRFI-V 245 Query 231 CREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEK 290 + + + W R Y QT F + + D P F + S I + P ++ Sbjct 246 LNKKLYRVVWNVTRRNVPYSKQTAFTVVSVIQCDD-KESVPEHTFTIGSQILMVSP-LKA 303 Query 291 KKLDGFMGRIR---SVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTE 347 F + R + Y + + + S + C+ CG +W TG+ ++ CG Sbjct 304 TNNKNFNLKQRLLHTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGAN 363 Query 348 NLTKE-GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGR--TI 404 + + G +P+NA+ CP +N H+ A+ ++ K + GG+ T+ Sbjct 364 YSANDVDLQSSGLVPKNALFLANCPCANNGAC--SHNAAQVYSILDGKACVEVGGKSFTL 421 Query 405 AFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLE----ILQKEKVN 460 FGG V++Y+GC + Y+VPRA + + + G G D ++E L+K + + Sbjct 422 TFGGVVYAYMGCCDGTMYFVPRAKSCVSRI-GDAIFTGCTGTWDKVVETANLFLEKAQHS 480 Query 461 INIVGDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGN--FKVTKGKAKK 518 +N F L E ++LA S +TS F E +++++ + N F VT G + Sbjct 481 LNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGDYIR 537 Query 519 GAWNIGE----QKSILSPLYAFA--SEAARVVRSIF---SRTLETAQN---SVRVLQKAA 566 A NIG +I +P AF E+ + V +I L++A + S + + Sbjct 538 DAINIGANGVCNATINAPFIAFTGLGESFKKVAAIPWKICSNLKSALDYYCSNIMFRVFP 597 Query 567 ITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGT----VYE 622 I ++ + L+D T V +Y V++ + + GT Sbjct 598 YDIPCDVNDFVELLLDCGKLT--------VATSYF---VLRYLDEKFDTVLGTVSNACQT 646 Query 623 KLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLV 682 L L+ + F+ D +++ K + V A+ + VQ ++ Sbjct 647 ALSSFLNACVAASRATAGFISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIM 706 Query 683 NKFLALCADSIIIGGAKLKALNL-GETFVTHSKGLYRKCVKSR-----EETGLLMPLKAP 736 +K + L ++ G KL A+ G + + G Y C+ ++ ++ L++P Sbjct 707 SKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYF-CLSTKAKTLQDQMNLVLPGDYN 765 Query 737 KEIIFL-----EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLL 791 K+ + + +T+ + V + G L+P T+E + +VG V ++ + + Sbjct 766 KKTLGILDPVPNADTIDVTANSTVVDVVHGQLEP----TNEHGPSMIVGNYVLVSDKLFV 821 Query 792 EIKDTEKYCALAPNMMVTNNTFTLKGGAP-TKVTFGDDTVIEVQGYKSVNITFELDERID 850 D E Y L N V + F LKGG P KVTFGD +EV Y+SV+IT+++ +D Sbjct 822 RTDDEEFYP-LCINGKVVSTLFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLD 880 Query 851 KVL-NEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFD 909 +L + K + +TVE V +F V+ D V+ L P+ G D++++ Y+++ Sbjct 881 ALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYN 940 Query 910 ESGEFKLASHMYCSFYP--------------------PDEDEEEGDCEE-EEFEPSTQYE 948 + G+ +S+M S P P D+EE EE P Sbjct 941 QDGDCAWSSNMTFSINPVEDVEEVEEFIEDDYLSDELPIADDEEAWTRAVEEVMPLDDIL 1000 Query 949 YGTEDDYQGKPLEFGATSA-------------ALQPEEEQEEDWLDDDSQQTVGQQDGSE 995 + + PLE S ++ + QE DS + Sbjct 1001 VAEIELEEDLPLETALESVEAEVGESISDELCVVETAKAQEPSVESTDSTPSTSTVVSEN 1060 Query 996 DNQTTTIQTIVEVQPQLEMELTPV---------------------VQTIEVNSFSGYLKL 1034 D + + E LE+E V Q V+S + Sbjct 1061 DLSVKPMSRVAETGDVLEVETAVVGGPVSDVTASVVTNDIVSVEQAQQCGVSSLPIQDEA 1120 Query 1035 TDN------------------------------------------------VYIKNADIV 1046 ++N V + D + Sbjct 1121 SENQVHQVPDLQCTSETKVEIVQPRQDLRPRRLRKSKVDLSKYKHTVINNSVTLVLGDAI 1180 Query 1047 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 1106 + A + V+VNAAN +LKHGGG+AGA+NKA+ +Q ESD+YI+ +GPL VG S +L Sbjct 1181 QIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISNSGPLHVGDSVLLK 1240 Query 1107 GHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCV 1166 G+ LA L VVGP+ ED LLK Y+ FN+H +++ PL+S+GIF DP S + Sbjct 1241 GYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGIFSVDPKVSFEYLL 1300 Query 1167 DTVRTNVYLAVFDKNLYDKLVS 1188 V T Y+ V ++++Y+ L + Sbjct 1301 ANVTTTTYVVVNNEDIYNTLAT 1322 >sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus (strain A59) OX=11142 GN=1a PE=1 SV=1 Length=4468 Score = 3674 bits (9526), Expect = 0.0, Method: Composition-based stats. Identities = 1085/2986 (36%), Positives = 1620/2986 (54%), Gaps = 165/2986 (6%) Query 1513 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 1565 DW + + G+ +K G V + +G + + ++ LL+ Sbjct 1553 DWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIRALLA---- 1608 Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + V TVD +N + V +G+ G + DG +VTK++ ++GK F+ + Sbjct 1609 NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLS 1668 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A + D L +Y + L KW + K ++NNCY+ A L LQ Sbjct 1669 EADLVAVKDAFGFDEPQLLKYYTMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1727 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 + LKF Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1728 LSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT 1787 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 L VCK CG +Q KGV+AVM+ GTL +G I CTCG + + Q PF+ Sbjct 1788 CNLEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFL 1845 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ +TG GHY H+ K D + K SE KG TD Sbjct 1846 ICSNTPEGRKLPDDV-VAANIFTGG-SVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTD 1903 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--N 1922 Y +N T + T+ LD V C E P L YY + Y+T +PI + + + Sbjct 1904 CLYLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVD 1962 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I A+ LN G+ E K+T +P GDVV Y + Sbjct 1963 GVYTNFKLVGHSI--AEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSS 2020 Query 1982 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFDV---------- 2027 G KP+VW H + TY +P+ C ++ PV+ S D Sbjct 2021 GCITFGKPVVWLGHEEASLKSLTYFNRPSVVC-ENKFNVLPVDVSEPTDKGPVPAAVLVT 2079 Query 2028 -LKSEDAQGMDNLACEDLKP--------VSEEVVENPTIQK-DVLECNV----KTTEVVG 2073 + DA +A E V EV + P++ DV E + K +V G Sbjct 2080 GVPGADASAGAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEG 2139 Query 2074 DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSV 2133 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2140 SVVVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPT------------ 2187 Query 2134 PWDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLC 2180 + Y K + K+V+ ++ R + C + +F Sbjct 2188 ----VREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWI 2243 Query 2181 TFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIW 2232 F N+ K T +A K K C A N L++ N+S + ++W Sbjct 2244 KF----NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLW 2296 Query 2233 F--LLLSVCLGSLI---------YSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTI 2278 F L +V L + + + G+ + C Y+ GY +S Sbjct 2297 FNFLYANVILSDFYLPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS----- 2351 Query 2279 ATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFT 2335 +C GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T Sbjct 2352 --FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDY-ISLFKLVVELVIGYSLYT 2408 Query 2336 RFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYV 2393 FY L + MQL ++ F+ + W L + + M P ++R YI + Y V Sbjct 2409 VCFYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKV 2468 Query 2394 WKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCV 2453 + HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+ Sbjct 2469 YCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCL 2528 Query 2454 NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTY 2513 NC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y Sbjct 2529 NCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVY 2588 Query 2514 ERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLD 2573 + + S FV+++ L + KG +V+V + ++ +++ A+V+Y+Q + +P+L+++ Sbjct 2589 DDVNASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVE 2646 Query 2574 QALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTF 2633 + L++ V+ MFD YV++ + +V + L + V A L + V L+ V+ TF Sbjct 2647 KKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTF 2706 Query 2634 ISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACI 2692 I AR+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I Sbjct 2707 IGCARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLI 2766 Query 2693 DCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVN 2752 +A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V Sbjct 2767 QNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVP 2826 Query 2753 VVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAI 2812 ++TT +LKGG + + L+ L L+ V + + P + + K +K I Sbjct 2827 ILTTPFSLKGGAVFSRMLQWLFVANLICFIV---LWALMPTYAVHKSDMQLPLYASFKVI 2883 Query 2813 DGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLP 2870 D GV RD++ TD CFANK FD W+ G Y N KACP++ AVI +++G + +P Sbjct 2884 DNGVLRDVSVTDACFANKFNQFDQWYESTFGLAYYRNSKACPVVVAVIDQDIGHTLFNVP 2943 Query 2871 GTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPV 2930 T+LR LHF+ F+ CYTP I Y +F S CVL++ CT+ A G P Sbjct 2944 TTVLRY-GFHVLHFITHAFATDSVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPH 3002 Query 2931 PYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTC 2989 PYCY V+ + Y SL P RY L + I+FP EG VRVV T YCR G C Sbjct 3003 PYCYTGGVMHNASLYSSLAPHVRYNLASSNGYIRFPEVVSEGIVRVVRTRSMTYCRVGLC 3062 Query 2990 ERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVA 3049 E +E G+C + + WVLNN YYR++PG FCG +A +L+ + L++PI ++AS VA Sbjct 3063 EEAEEGICFNFNRSWVLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVA 3122 Query 3050 GGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIY 3109 G I+AI+V YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L +Y+ Y Sbjct 3123 GAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFY 3182 Query 3110 LYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNG 3169 Y T Y +++S + H+QW+VM+ ++P W I Y+ + + H W FS R++ Sbjct 3183 FYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCIIYVAVVVSNHALWLFS--YCRKIGTEV 3240 Query 3170 VSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREA 3229 S TFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREA Sbjct 3241 RSDGTFEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREA 3298 Query 3230 ACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTT 3288 AC LAKA+ F+ N+G+DVLYQPP S+T++ LQSG KM P+ KVE C+V VT G Sbjct 3299 ACSQLAKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVSPTSKVEPCIVSVTYGNM 3358 Query 3289 TLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNC 3348 TLNGLWLDD VYCPRHVIC+S DM +P+Y +LL R ++ +F V +G + L V+ + MQ C Sbjct 3359 TLNGLWLDDKVYCPRHVICSSADMTDPDYPNLLCRVTSSDFCVMSGRMSLTVMSYQMQGC 3418 Query 3349 VLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSC 3408 L L V NP TPKY F ++PG+TF+VLA YNG P G + +R + TIKGSFL GSC Sbjct 3419 QLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSC 3478 Query 3409 GSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVL 3468 GSVG+ + D V F YMH +EL TG H GTD GNFYGP+ D Q Q D T TVNV+ Sbjct 3479 GSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVV 3538 Query 3469 AWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMC 3528 AWLYAA+ N WF+ + +L +FN+ AM + + D V L L++ TG+ V + Sbjct 3539 AWLYAAIFNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQVL 3596 Query 3529 ASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTIL 3588 A++K L +G G+ ILGS +LEDE TP DV +Q +GV QS R IKGT W+L + Sbjct 3597 AAIKRL-HSGFQGKQILGSCVLEDE-TPSDVYQQLAGVKLQSKRTRVIKGTCCWILASTF 3654 Query 3589 TSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVA 3648 ++ +W++F ++ + L + + +FAM+ +KHKH +L ++++P L T Sbjct 3655 LFCSIISAFVKWTMFMYVTTH-MLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTFY 3713 Query 3649 YFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRV 3708 +V S+ WL ++ + + + +V ++ +T R++ D + Sbjct 3714 TNYLVVYKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIM 3773 Query 3709 WTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPI 3768 + + +++LV Y+G L++ + ++ + S+ Y+ + A+ ++ + + Sbjct 3774 FLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTYTWTTMLSLATAK-VIAKWLAVNVL 3830 Query 3769 FFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGL 3828 +F ++ ++L Y +GY C CY+G+ LLN FR+ LGVY+Y +S QE RYMN+ GL Sbjct 3831 YFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGL 3890 Query 3829 LPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLW 3888 PP+NS +A LN KLLG+GG P I+V+ +QS+++DVKC +VVLL+ LQ L + S+SKLW Sbjct 3891 RPPRNSFEALMLNFKLLGIGGVPVIEVSQIQSRLTDVKCANVVLLNCLQHLHIASNSKLW 3950 Query 3889 AQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQ 3942 C LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + + LQ Sbjct 3951 QYCSTLHNEILATSDLSMAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDNTVLQ 4010 Query 3943 AIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKL 4001 A+ SEF ++ S+ + A++ ++A A+G + + +K+L+K+ N+AKS ++RD A+ RKL Sbjct 4011 ALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARKL 4070 Query 4002 EKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNI 4061 E+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN Sbjct 4071 ERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNA 4130 Query 4062 IPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPN 4121 IP T+ L +++PD + D TYA +W IQ + DAD + QL+EI +++ Sbjct 4131 IPSLTSNTLTIIVPDKQVFDQVVDNVYVTYAGNVWHIQFIQDADGAVKQLNEIDVNS--- 4187 Query 4122 LAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGR 4179 WPL++ A R N S V LQNNEL P LR +G+ T YYNTT G+ Sbjct 4188 -TWPLVIAANRHNEVSTVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGTGK 4244 Query 4180 FVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNR 4239 V A+LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L R Sbjct 4245 IVYAILSDCDGLKYTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLAR 4303 Query 4240 GMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLC 4299 G V+G+L++TVRLQAG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKMLC Sbjct 4304 GWVVGTLSSTVRLQAGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLC 4363 Query 4300 THTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCAND 4359 H GTG AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P D Sbjct 4364 DHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKD 4422 Query 4360 PVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 PV + L + VC VCG W+ CSC QS D +FLNGF V Sbjct 4423 PVSYVLTHDVCQVCGFWRDGSCSCVGTG-SQFQSKDT-NFLNGFGV 4466 Score = 631 bits (1628), Expect = 7e-180, Method: Composition-based stats. Identities = 234/1128 (21%), Positives = 404/1128 (36%), Gaps = 202/1128 (18%) Query 2 ESLVPGFNEKTHVQLS---LPVLQ-------VRDVLVRGFGDSVEEVLSEARQHLKDGTC 51 E V G HV+++ LP L+ +RD+ V + ++V + L+ G+ Sbjct 46 EPKVKGKTLVNHVRVNCSRLPALECCVQSAIIRDIFV---DEDPQKVEASTMMALQFGSA 102 Query 52 GLVEVEK----------GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQY 97 LV+ K GVLP+ +F + T HV L + +G+ Sbjct 103 VLVKPSKRLSIQAWTNLGVLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCL 162 Query 98 GRSGETLGVLVPHVGEIPVAYRK------VLLRKNGNKGA---GGHSYGADLKSFDLGDE 148 G +G +G VP V IP ++ +LLRK GNKG+ G + +D E Sbjct 163 G-NGRFIGWFVP-VTAIPEYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVE 220 Query 149 LGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARA 208 D E+ N K+S L++ G +VD C G C+ L Sbjct 221 ---DACEEVHLNPKGKYSCK-AYALLKGYRGVKPILFVDQYGCDYTG----CLAKGLEDY 272 Query 209 GKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKS-YELQTPFEIKLAKKFDTFN 267 G TLSE + R + E +AW+ +R ++ LQT ++ Sbjct 273 GDL--TLSEMKELFPVWRDSL---DSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPT 327 Query 268 GEC---------PNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLS 318 + P + N+I+K + PR+ + L Y EC + Sbjct 328 EDVVDGDVVVREPAHLLAANAIVKRL-PRLVETMLYTDSSVTEFCY-KTKLCECGFITQF 385 Query 319 TLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTKE-GATTCGYLPQNAVVKIYCPACH 374 + C D C W G+ + C + E A + G +P+ V+ Sbjct 386 GYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVL-------- 437 Query 375 NSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANI--- 431 + + ++ G + FG V+ + C W+P +++ Sbjct 438 ---------FTQSTDTVNRESFKLYGHAVVPFGSAVY-WSPCPG---MWLPVIWSSVKSY 484 Query 432 -GCNHTGVVGEG-SEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVE 489 G +TGVVG D + L + V + G+ E+ AI+ Sbjct 485 SGLTYTGVVGCKAIVQETDAICRSLYMDYVQ-HKCGNL---EQRAIL------------- 527 Query 490 TVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFS 549 GLD +Q++ + G++ + +L + F R+ F+ Sbjct 528 ---GLDDVYHRQLLVNRGDYSL-----------------LLENVDLFVKR-----RAEFA 562 Query 550 RTLETAQNSVRVLQKAAITILDGISQYSLRLIDA-MMFTSDLA------TNNLVVMAYIT 602 T + + L +LDG+ S LI + FTS + T+ + MA + Sbjct 563 CKFATCGDGLVPL------LLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLF 616 Query 603 GGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRD------GWEIVKFISTCA 656 V++ ++++ + G + + K + + K E + D GW + ++ Sbjct 617 MHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVN--G 674 Query 657 CEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSII---IGGAKLKALNLGETFVTHS 713 V ++T +E+ E V+ F F + DS+ + G + + S Sbjct 675 LFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGS 734 Query 714 KGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEA 773 K +Y + + +MP+ E L GE P + V + L Sbjct 735 K-VYEVVQ--KSLSAYVMPVGC-SEATCLVGEIEPAVFEDDVVDVVKAPLT-----YQGC 785 Query 774 VEAPLVGTPVCINGLMLLEIKDTEKYCALAPN-MMVTNNTFTLKGGAPTKVTFGDD-TVI 831 + P +CI + + + Y + N + + A KV F D V Sbjct 786 CKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCAGKKVEFNDKPKVR 845 Query 832 EVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE--- 888 ++ + + ITF LD D VL++ CS + V+ ++E VV DAV TL P E Sbjct 846 KIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDV 905 Query 889 LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYE 948 + T + LD + YLFDE G+ +A MYCSF PD++ DC + + + + Sbjct 906 IGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDE----DCVAADVVDADENQ 961 Query 949 YGTEDDYQGKPLEFGATSAALQPEEEQEED-----WLDDDSQQTVGQQDGSEDNQTTTIQ 1003 +D +A+ + QEED ++ DS+ V E+ Sbjct 962 DDDAED------------SAVLVADTQEEDGVAKGQVEADSEICVAHTGSQEE------- 1002 Query 1004 TIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKK 1051 + E + EV S + + AD V+ Sbjct 1003 -LAEPDAVGSQTPIASAEETEVGEASDREGIAEAKATVCADAVDACPD 1049 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 65/252 (26%), Positives = 116/252 (46%), Gaps = 18/252 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV D+++ + V V+VN AN + HG GVAGA+ + +A E+ D + Sbjct 1319 CITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVK 1378 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLLS 1150 G +VG +G L K L++VGP+ + LL+ AY++ N+ + ++ L+S Sbjct 1379 AQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLIS 1438 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1439 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQLAKNLCR 1498 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 +VK F+T + S+ ++C L+E + L ++ L ++ N + Sbjct 1499 DVK-FVTNACSSLFS--------ESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1549 Query 1264 HPDSATLVSDID 1275 P LV+ D Sbjct 1550 LPTDWRLVNKFD 1561 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 58/149 (39%), Gaps = 16/149 (11%) Query 1663 GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTV 1722 G S NC+L + L+ +Q + L+F +Q + +AG F ++ K++ Sbjct 1110 GFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI 1169 Query 1723 GEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFK 1780 G V + + S K N C C + L+G++A+ + G + Sbjct 1170 ILPQGGYVADFAYFFLSQ---CSFKAYANWRCLECDM-ELKLQGLDAMFFYGDV------ 1219 Query 1781 KGVQIPCTCGKQATKYLVQQESPFVMMSA 1809 V C CG T L+ + P+ + Sbjct 1220 --VSHMCKCGNSMT--LLSADIPYTLHFG 1244 >sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 3674 bits (9526), Expect = 0.0, Method: Composition-based stats. Identities = 1082/2982 (36%), Positives = 1617/2982 (54%), Gaps = 165/2982 (6%) Query 1513 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 1565 DW + + G+ +K G V + +G + + ++ LL+ Sbjct 1553 DWRLVNKFDSVDGVRTIKYFECPGGIFVSSQGKKFGYVQNGSFKEASVSQIRALLA---- 1608 Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + V TVD +N + V +G+ G + DG +VTK++ ++GK F+ + Sbjct 1609 NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLS 1668 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A + D L +Y + L KW + K ++NNCY+ A L LQ Sbjct 1669 EADLVAVKDAFGFDEPQLLKYYTMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1727 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 + LKF Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1728 LSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT 1787 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 L VCK CG +Q KGV+AVM+ GTL +G I CTCG + + Q PF+ Sbjct 1788 CNLEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFL 1845 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ +TG GHY H+ K D + K SE KG TD Sbjct 1846 ICSNTPEGRKLPDDV-VAANIFTGG-SVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTD 1903 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP--N 1922 Y +N T + T+ LD V C E P L YY + Y+T +PI + + + Sbjct 1904 CLYLKNLKQTFSSVLTTFYLDDVKCVEYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVD 1962 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I A+ LN G+ E K+T +P GDVV Y + Sbjct 1963 GVYTNFKLVGHSI--AEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSS 2020 Query 1982 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFDV---------- 2027 G KP+VW H + TY +P+ C ++ PV+ S D Sbjct 2021 GCITFGKPVVWLGHEEASLKSLTYFNRPSVVC-ENKFNVLPVDVSEPTDKGPVPAAVLVT 2079 Query 2028 -LKSEDAQGMDNLACEDLKP--------VSEEVVENPTIQK-DVLECNV----KTTEVVG 2073 + DA +A E V EV + P++ DV E + K +V G Sbjct 2080 GVPGADASAGAGIAKEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEG 2139 Query 2074 DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSV 2133 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2140 SVVVNDPTSETKVVKSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPT------------ 2187 Query 2134 PWDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLC 2180 + Y K + K+V+ ++ R + C + +F Sbjct 2188 ----VREYVKWGMGKIVTPAKLLLLRDEKQEFVAPKVVKAKAIACYCAVKWFLLYCFSWI 2243 Query 2181 TFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIW 2232 F N+ K T +A K K C A N L++ N+S + ++W Sbjct 2244 KF----NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVATVFLLW 2296 Query 2233 F--LLLSVCLGSLI---------YSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTI 2278 F L +V L + + + G+ + C Y+ GY +S Sbjct 2297 FNFLYANVILSDFYLPNIGPLPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS----- 2351 Query 2279 ATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFT 2335 +C GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T Sbjct 2352 --FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRLSFDY-ISLFKLVVELVIGYSLYT 2408 Query 2336 RFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYV 2393 FY L + MQL ++ F+ + W L + + M P ++R YI + Y V Sbjct 2409 VCFYPLFVLIGMQLLTTWLPEFFMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKV 2468 Query 2394 WKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCV 2453 + HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+ Sbjct 2469 YCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCL 2528 Query 2454 NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTY 2513 NC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ GQ+ Y Sbjct 2529 NCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVY 2588 Query 2514 ERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLD 2573 + + S FV+++ L + KG +V+V + ++ +++ A+V+Y+Q + +P+L+++ Sbjct 2589 DDVNASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVE 2646 Query 2574 QALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTF 2633 + L++ V+ MFD YV++ + +V + L + V A L + V L+ V+ TF Sbjct 2647 KKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTF 2706 Query 2634 ISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACI 2692 I AR+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I Sbjct 2707 IGCARRKCAIDSDVETKSITKSVMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLI 2766 Query 2693 DCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVN 2752 +A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V Sbjct 2767 QNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVP 2826 Query 2753 VVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAI 2812 ++TT +LKGG + + L+ L L+ V + + P + + K +K I Sbjct 2827 ILTTPFSLKGGAVFSRMLQWLFVANLICFIV---LWALMPTYAVHKSDMQLPLYASFKVI 2883 Query 2813 DGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLP 2870 D GV RD++ TD CFANK FD W+ G Y N KACP++ AVI +++G + +P Sbjct 2884 DNGVLRDVSVTDACFANKFNQFDQWYESTFGLAYYRNSKACPVVVAVIDQDIGHTLFNVP 2943 Query 2871 GTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPV 2930 T+LR LHF+ F+ CYTP I Y +F S CVL++ CT+ A G P Sbjct 2944 TTVLRY-GFHVLHFITHAFATDSVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPH 3002 Query 2931 PYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTC 2989 PYCY V+ + Y SL P RY L + I+FP EG VRVV T YCR G C Sbjct 3003 PYCYTGGVMHNASLYSSLAPHVRYNLASSNGYIRFPEVVSEGIVRVVRTRSMTYCRVGLC 3062 Query 2990 ERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVA 3049 E +E G+C + + WVLNN YYR++PG FCG +A +L+ + L++PI ++AS VA Sbjct 3063 EEAEEGICFNFNRSWVLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVA 3122 Query 3050 GGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIY 3109 G I+AI+V YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L +Y+ Y Sbjct 3123 GAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFY 3182 Query 3110 LYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNG 3169 Y T Y +++S + H+QW+VM+ ++P W I Y+ + + H W FS R++ Sbjct 3183 FYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCIIYVAVVVSNHALWLFS--YCRKIGTEV 3240 Query 3170 VSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREA 3229 S TFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREA Sbjct 3241 RSDGTFEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREA 3298 Query 3230 ACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTT 3288 AC LAKA+ F+ N+G+DVLYQPP S+T++ LQSG KM P+ KVE C+V VT G Sbjct 3299 ACSQLAKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVSPTSKVEPCIVSVTYGNM 3358 Query 3289 TLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNC 3348 TLNGLWLDD VYCPRHVIC+S DM +P+Y +LL R ++ +F V +G + L V+ + MQ C Sbjct 3359 TLNGLWLDDKVYCPRHVICSSADMTDPDYPNLLCRVTSSDFCVMSGRMSLTVMSYQMQGC 3418 Query 3349 VLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSC 3408 L L V NP TPKY F ++PG+TF+VLA YNG P G + +R + TIKGSFL GSC Sbjct 3419 QLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSC 3478 Query 3409 GSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVL 3468 GSVG+ + D V F YMH +EL TG H GTD GNFYGP+ D Q Q D T TVNV+ Sbjct 3479 GSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVV 3538 Query 3469 AWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMC 3528 AWLYAA+ N WF+ + +L +FN+ AM + + D V L L++ TG+ V + Sbjct 3539 AWLYAAIFNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQVL 3596 Query 3529 ASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTIL 3588 A++K L +G G+ ILGS +LEDE TP DV +Q +GV QS R IKGT W+L + Sbjct 3597 AAIKRL-HSGFQGKQILGSCVLEDE-TPSDVYQQLAGVKLQSKRTRVIKGTCCWILASTF 3654 Query 3589 TSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVA 3648 ++ +W++F ++ + L + + +FAM+ +KHKH +L ++++P L T Sbjct 3655 LFCSIISAFVKWTMFMYVTTH-MLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTFY 3713 Query 3649 YFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRV 3708 +V S+ WL ++ + + + +V ++ +T R++ D + Sbjct 3714 TNYLVVYKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIM 3773 Query 3709 WTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPI 3768 + + +++LV Y+G L++ + ++ + S+ Y+ + A+ ++ + + Sbjct 3774 FLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTYTWTTMLSLATAK-VIAKWLAVNVL 3830 Query 3769 FFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGL 3828 +F ++ ++L Y +GY C CY+G+ LLN FR+ LGVY+Y +S QE RYMN+ GL Sbjct 3831 YFTDVPQIKLVLLSYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGL 3890 Query 3829 LPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLW 3888 PP+NS +A LN KLLG+GG P I+V+ +QS+++DVKC +VVLL+ LQ L + S+SKLW Sbjct 3891 RPPRNSFEALMLNFKLLGIGGVPVIEVSQIQSRLTDVKCANVVLLNCLQHLHIASNSKLW 3950 Query 3889 AQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQ 3942 C LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + + LQ Sbjct 3951 QYCSTLHNEILATSDLSMAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDNTVLQ 4010 Query 3943 AIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKL 4001 A+ SEF ++ S+ + A++ ++A A+G + + +K+L+K+ N+AKS ++RD A+ RKL Sbjct 4011 ALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARKL 4070 Query 4002 EKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNI 4061 E+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN Sbjct 4071 ERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNA 4130 Query 4062 IPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPN 4121 IP T+ L +++PD + D TYA +W IQ + DAD + QL+EI +++ Sbjct 4131 IPSLTSNTLTIIVPDKQVFDQVVDNVYVTYAGNVWHIQFIQDADGAVKQLNEIDVNS--- 4187 Query 4122 LAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGR 4179 WPL++ A R N S V LQNNEL P LR +G+ T YYNTT G+ Sbjct 4188 -TWPLVIAANRHNEVSTVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGTGK 4244 Query 4180 FVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNR 4239 V A+LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L R Sbjct 4245 IVYAILSDCDGLKYTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLAR 4303 Query 4240 GMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLC 4299 G V+G+L++TVRLQAG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKMLC Sbjct 4304 GWVVGTLSSTVRLQAGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLC 4363 Query 4300 THTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCAND 4359 H GTG AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P D Sbjct 4364 DHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKD 4422 Query 4360 PVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 PV + L + VC VCG W+ CSC QS D +FLN Sbjct 4423 PVSYVLTHDVCQVCGFWRDGSCSCVGTG-SQFQSKDT-NFLN 4462 Score = 632 bits (1631), Expect = 4e-180, Method: Composition-based stats. Identities = 234/1128 (21%), Positives = 404/1128 (36%), Gaps = 202/1128 (18%) Query 2 ESLVPGFNEKTHVQLS---LPVLQ-------VRDVLVRGFGDSVEEVLSEARQHLKDGTC 51 E V G HV+++ LP L+ +RD+ V + ++V + L+ G+ Sbjct 46 EPKVKGKTLVNHVRVNCSRLPALECCVQSAIIRDIFV---DEDPQKVEASTMMALQFGSA 102 Query 52 GLVEVEK----------GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQY 97 LV+ K GVLP+ +F + T HV L + +G+ Sbjct 103 VLVKPSKRLSIQAWTNLGVLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCL 162 Query 98 GRSGETLGVLVPHVGEIPVAYRK------VLLRKNGNKGA---GGHSYGADLKSFDLGDE 148 G +G +G VP V IP ++ +LLRK GNKG+ G + +D E Sbjct 163 G-NGRFIGWFVP-VTAIPEYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVE 220 Query 149 LGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARA 208 D E+ N K+S L++ G +VD C G C+ L Sbjct 221 ---DACEEVHLNPKGKYSCK-AYALLKGYRGVKPILFVDQYGCDYTG----CLAKGLEDY 272 Query 209 GKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKS-YELQTPFEIKLAKKFDTFN 267 G TLSE + R + E +AW+ +R ++ LQT ++ Sbjct 273 GDL--TLSEMKELFPVWRDSL---DSEVLVAWHVDRDPRAAMRLQTLATVRCIDYVGQPT 327 Query 268 GEC---------PNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLS 318 + P + N+I+K + PR+ + L Y EC + Sbjct 328 EDVVDGDVVVREPAHLLAANAIVKRL-PRLVETMLYTDSSVTEFCY-KTKLCECGFITQF 385 Query 319 TLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTKE-GATTCGYLPQNAVVKIYCPACH 374 + C D C W G+ + C + E A + G +P+ V+ Sbjct 386 GYVDCCGDTCDFRGWVAGNMMDGFPCPGCTKNYMPWELEAQSSGVIPEGGVL-------- 437 Query 375 NSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANI--- 431 + + ++ G + FG V+ + C W+P +++ Sbjct 438 ---------FTQSTDTVNRESFKLYGHAVVPFGSAVY-WSPCPG---MWLPVIWSSVKSY 484 Query 432 -GCNHTGVVGEG-SEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVE 489 G +TGVVG D + L + V + G+ E+ AI+ Sbjct 485 SGLTYTGVVGCKAIVQETDAICRSLYMDYVQ-HKCGNL---EQRAIL------------- 527 Query 490 TVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSIFS 549 GLD +Q++ + G++ + +L + F R+ F+ Sbjct 528 ---GLDDVYHRQLLVNRGDYSL-----------------LLENVDLFVKR-----RAEFA 562 Query 550 RTLETAQNSVRVLQKAAITILDGISQYSLRLIDA-MMFTSDLA------TNNLVVMAYIT 602 T + + L +LDG+ S LI + FTS + T+ + MA + Sbjct 563 CKFATCGDGLVPL------LLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLF 616 Query 603 GGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRD------GWEIVKFISTCA 656 V++ ++++ + G + + K + + K E + D GW + ++ Sbjct 617 MHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQLVN--G 674 Query 657 CEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSII---IGGAKLKALNLGETFVTHS 713 V ++T +E+ E V+ F F + DS+ + G + + S Sbjct 675 LFAVANGVITFVQEVPELVKNFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGS 734 Query 714 KGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEA 773 K +Y + + +MP+ E L GE P + V + L Sbjct 735 K-VYEVVQ--KSLSAYVMPVGC-SEATCLVGEIEPAVFEDDVVDVVKAPLT-----YQGC 785 Query 774 VEAPLVGTPVCINGLMLLEIKDTEKYCALAPN-MMVTNNTFTLKGGAPTKVTFGDD-TVI 831 + P +CI + + + Y + N + + A KV F D V Sbjct 786 CKPPTSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCAGKKVEFNDKPKVR 845 Query 832 EVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE--- 888 ++ + + ITF LD D VL++ CS + V+ ++E VV DAV TL P E Sbjct 846 KIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDV 905 Query 889 LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYE 948 + T + LD + YLFDE G+ +A MYCSF PD++ DC + + + + Sbjct 906 IGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDE----DCVAADVVDADENQ 961 Query 949 YGTEDDYQGKPLEFGATSAALQPEEEQEED-----WLDDDSQQTVGQQDGSEDNQTTTIQ 1003 +D +A+ + QEED ++ DS+ V E+ Sbjct 962 DDDAED------------SAVLVADTQEEDGVAKGQVEADSEICVAHTGSQEE------- 1002 Query 1004 TIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKK 1051 + E + EV S + + AD V+ Sbjct 1003 -LAEPDAVGSQTPIASAEETEVGEASDREGIAEAKATVCADAVDACPD 1049 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 65/252 (26%), Positives = 116/252 (46%), Gaps = 18/252 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV D+++ + V V+VN AN + HG GVAGA+ + +A E+ D + Sbjct 1319 CITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVK 1378 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLLS 1150 G +VG +G L K L++VGP+ + LL+ AY++ N+ + ++ L+S Sbjct 1379 AQGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLIS 1438 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1439 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSLQLAKNLCR 1498 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 +VK F+T + S+ ++C L+E + L ++ L ++ N + Sbjct 1499 DVK-FVTNACSSLFS--------ESCFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1549 Query 1264 HPDSATLVSDID 1275 P LV+ D Sbjct 1550 LPTDWRLVNKFD 1561 Score = 46.7 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 58/149 (39%), Gaps = 16/149 (11%) Query 1663 GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTV 1722 G S NC+L + L+ +Q + L+F +Q + +AG F ++ K++ Sbjct 1110 GFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI 1169 Query 1723 GEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFK 1780 G V + + S K N C C + L+G++A+ + G + Sbjct 1170 ILPQGGYVADFAYFFLSQ---CSFKAYANWRCLECDM-ELKLQGLDAMFFYGDV------ 1219 Query 1781 KGVQIPCTCGKQATKYLVQQESPFVMMSA 1809 V C CG T L+ + P+ + Sbjct 1220 --VSHMCKCGNSMT--LLSADIPYTLHFG 1244 >sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 3669 bits (9515), Expect = 0.0, Method: Composition-based stats. Identities = 1084/2982 (36%), Positives = 1620/2982 (54%), Gaps = 164/2982 (5%) Query 1513 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 1565 DW + + G+ +K G+ V + +G +V + ++ LL+ Sbjct 1500 DWRLVNKFDSVDGVRTVKYFECPGEIFVSSQGKKFGYVQNGSFKVASVSQIRALLA---- 1555 Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1556 NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLS 1615 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A D L +Y + L KW + K ++NNCY+ A L LQ Sbjct 1616 AADLVAVTDAFGFDEPQLLKYYNMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1674 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 + LKF+ Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1675 LSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSGAT 1734 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 VCK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF+ Sbjct 1735 CDFEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYTIACTCGNKLV-HCTQLNVPFL 1792 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1793 ICSNKPEGKKLPDDV-VAANIFTGG-SLGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTD 1850 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPN-- 1922 Y +N T + K T+ LD V C E +P L YY + Y+T +PI + + Sbjct 1851 CLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYT-KPIIKAQFRTFEKVE 1909 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I A+ N G+ E K+T +P GDVV Y + Sbjct 1910 GVYTNFKLVGHSI--AEKFNAKLGFDCNSPFTEYKITEWPTATGDVVLASDDLYVSRYSG 1967 Query 1982 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD-------VLKS 2030 G KP++W H + TY +P+ C ++ PV+ S D VL + Sbjct 1968 GCVTFGKPVIWLGHEEASLKSLTYFNRPSVVC-ENKFNVLPVDVSEPTDKGPVPAAVLVT 2026 Query 2031 EDAQGM---DNLACEDLKPVSEEVVENPTI---------QKDVLECNV----KTTEVVGD 2074 G A E S+ VV+ DV E + K +V Sbjct 2027 GALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVEDS 2086 Query 2075 IILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVP 2134 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2087 VVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELSRLVNSPT------------- 2133 Query 2135 WDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLCT 2181 + Y K + K+V ++ R + C + + +FF Sbjct 2134 ---VREYVKWGMTKIVIPAKLVLLRDEKQEFVAPKVVKAKVIACYSAVKWFFLYCFSWIK 2190 Query 2182 FTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIWF 2233 F N+ K T +A K C A N L++ N++ + ++WF Sbjct 2191 F----NTDNKVIYTTEVAS---KLTFNLCCLAFKNALQTFNWNVVSRGFFLVATVFLLWF 2243 Query 2234 --LLLSVCLGSLI---------YSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIA 2279 L +V L + + + + G+ + C Y+ GY +S Sbjct 2244 NFLYANVILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFTLCDLYQVSDVGYRSS------ 2297 Query 2280 TYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTR 2336 +C GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T Sbjct 2298 -FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDY-ISLFKLVVELVIGYSLYTV 2355 Query 2337 FFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVW 2394 FY L MQL ++ F+ + W + + M P ++R YI + Y ++ Sbjct 2356 CFYPLFGLIGMQLLTTWLPEFFMLETMHWSARFFVFVANMLPAFTLLRFYIVVTAMYKIF 2415 Query 2395 KSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVN 2454 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+N Sbjct 2416 CLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTGFCAKHQWNCLN 2475 Query 2455 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYE 2514 C F G+TFI+ E A DLS + KRP+NPTD + Y+V V S+ L++++ GQ+ Y+ Sbjct 2476 CSAFGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYD 2535 Query 2515 RHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQ 2574 S S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P+LL+++ Sbjct 2536 DVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLLVEK 2593 Query 2575 ALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFI 2634 L++ V+ MFD YV++ +V + L + V A L + V L+ V+ TFI Sbjct 2594 KLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFI 2653 Query 2635 SAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACID 2693 AR+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I Sbjct 2654 GCARRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQ 2713 Query 2694 CSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNV 2753 +A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V + Sbjct 2714 NNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPI 2773 Query 2754 VTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAID 2813 +TT +LKGG + + L+ L V L+ V + + P + + K +K ID Sbjct 2774 LTTPFSLKGGAVFSKVLQWLFVVNLICFIV---LWALMPTYAVHKSDMQLPLYASFKVID 2830 Query 2814 GGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPG 2871 GV RD+ TD CFANK FD W+ G Y N +ACP++ AVI +++G+ + +P Sbjct 2831 NGVLRDVTVTDACFANKFIQFDQWYESTFGLVYYRNSRACPVVVAVIDQDIGYTLFNVPT 2890 Query 2872 TILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVP 2931 +LR LHF+ F+ CYTP I Y +F S CVL++ CT+ A G P P Sbjct 2891 KVLRY-GFHVLHFITHAFATDSVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHP 2949 Query 2932 YCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCE 2990 YCY ++ + Y+SL P RY L + + I+FP EG VR+V T YCR G CE Sbjct 2950 YCYTEGIMHNASLYDSLAPHVRYNLANSNGYIRFPEVVSEGIVRIVRTRSMTYCRVGLCE 3009 Query 2991 RSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAG 3050 +E GVC + + WVLNN YYR++PG FCG +A +L+ + L++PI ++AS VAG Sbjct 3010 DAEEGVCFNFNSSWVLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAG 3069 Query 3051 GIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYL 3110 I+AI+V YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L +Y+ Y Sbjct 3070 AILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYF 3129 Query 3111 YLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGV 3170 Y T Y +++S + H+QW+VM+ ++P W I Y+ + + H W FS R++ Sbjct 3130 YTTLYFPSEISVVMHLQWLVMYGAIMPLWFCIIYVAVVVSNHALWLFS--YCRKLGTEVR 3187 Query 3171 SFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAA 3230 S TFEE +L TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAA Sbjct 3188 SDGTFEEMSLTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAA 3245 Query 3231 CCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTT 3289 C LAKA+ F+ N+G+DVLYQPP S+T++ LQSG KM FP+ KVE C+V VT G T Sbjct 3246 CSQLAKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVFPTSKVEPCVVSVTYGNMT 3305 Query 3290 LNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCV 3349 LNGLWLDD VYCPRHVIC+S DM +P+Y +LL R + +F V +G + L V+ + MQ + Sbjct 3306 LNGLWLDDKVYCPRHVICSSADMTDPDYSNLLCRVISSDFCVMSGRMSLTVMSYQMQGSL 3365 Query 3350 LKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCG 3409 L L V NP TPKY F ++PG+TF+VLA YNG G + MR ++TIKGSFL GSCG Sbjct 3366 LVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGKSQGAFHVTMRSSYTIKGSFLCGSCG 3425 Query 3410 SVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLA 3469 SVG+ + D V F YMH +EL TG H GTD GNFYGP+ D Q Q D T TVNV+A Sbjct 3426 SVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVA 3485 Query 3470 WLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA 3529 WLYAA++N WF+ + +L +FN+ AM + + D V L L++ TG+ V + A Sbjct 3486 WLYAAILNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQILA 3543 Query 3530 SLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILT 3589 ++K L +G G+ ILGS +LEDE TP DV +Q +GV QS R +KGT W+L + L Sbjct 3544 AIKRLY-SGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQSKRTRVVKGTCCWILASTLL 3602 Query 3590 SLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAY 3649 ++ +W++F ++ + L + + +FAM+ VKHKH +L +F++P L T+ Y Sbjct 3603 FCSIISAFVKWTMFMYVTTH-MLGVTLCALCFVSFAMLLVKHKHLYLTMFIMPVLCTLFY 3661 Query 3650 FN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRV 3708 N +V S+ WL ++ + + + +V ++ +T R++ D + Sbjct 3662 TNYLVVYKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVM 3721 Query 3709 WTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPI 3768 + + +++LV Y+G L++ + ++ + S+ Y+ + A+ ++ + + Sbjct 3722 FLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTYTWTTMLSLATAK-VIAKWLAVNVL 3778 Query 3769 FFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGL 3828 +F ++ ++L Y +GY C CY+G+ LLN FR+ LGVY+Y +S QE RYMN+ GL Sbjct 3779 YFTDVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGL 3838 Query 3829 LPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLW 3888 PP+NS +A LN KLLG+GG P I+V+ +QS+++DVKC +VVLL+ LQ L + SSSKLW Sbjct 3839 RPPRNSFEALVLNFKLLGIGGVPVIEVSQIQSRLTDVKCVNVVLLNCLQHLHIASSSKLW 3898 Query 3889 AQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQ 3942 C LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + + LQ Sbjct 3899 QYCSTLHNEILATSDLSVAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDSTVLQ 3958 Query 3943 AIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKL 4001 A+ SEF ++ S+ + A++ ++A A+G + + +K+L+K+ N+AKS ++RD A+ RKL Sbjct 3959 ALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARKL 4018 Query 4002 EKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNI 4061 E+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN Sbjct 4019 ERMADLALTNMYKEARINDKKSKVVSALQTMLFSMIRKLDNQALNSILDNAVKGCVPLNA 4078 Query 4062 IPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPN 4121 IP T+ L +++PD + D TYA +W IQ + DAD + QL+EI + N Sbjct 4079 IPSLTSNTLTIIVPDKQVFDQVVDNVYVTYAGNVWHIQSIQDADGAVKQLNEIDV----N 4134 Query 4122 LAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGR 4179 + WPL++ A R N S+V LQNNEL P LR +G+ T YYNTT G+ Sbjct 4135 ITWPLVIAANRHNEVSSVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGMGK 4192 Query 4180 FVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNR 4239 V A+LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L R Sbjct 4193 IVYAILSDCDGLKYTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLAR 4251 Query 4240 GMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLC 4299 G V+G+L++TVRLQAG ATE +NS + S CAF+VD K Y DY+ GG P+TNCVKMLC Sbjct 4252 GWVVGTLSSTVRLQAGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLC 4311 Query 4300 THTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCAND 4359 H GTG AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P D Sbjct 4312 DHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKD 4370 Query 4360 PVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 PV + L + VC VCG W+ CSC QS D +FLN Sbjct 4371 PVSYVLTHDVCQVCGFWRDGSCSCVGTG-SQFQSKDT-NFLN 4410 Score = 624 bits (1609), Expect = 2e-177, Method: Composition-based stats. Identities = 227/1099 (21%), Positives = 389/1099 (35%), Gaps = 194/1099 (18%) Query 2 ESLVPGFNEKTHVQLS---LPVLQ-------VRDVLVRGFGDSVEEVLSEARQHLKDGTC 51 E G HV++ LP L+ +RD+ V + V + L+ G+ Sbjct 46 EPKTKGKTLINHVRVDCSRLPALECCVQSAIIRDIFV---DEDPLNVEASTMMALQFGSA 102 Query 52 GLVEVEK----------GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQY 97 LV+ K GVLP+ +F + T HV +L + +G+ Sbjct 103 VLVKPSKRLSIQAWAKLGVLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCL 162 Query 98 GRSGETLGVLVPHVGEIPVAYRK------VLLRKNGNKGA---GGHSYGADLKSFDLGDE 148 G +G +G VP V IP ++ +LLRK GNKG+ G + +D E Sbjct 163 G-NGRFIGWFVP-VTAIPAYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVE 220 Query 149 LGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARA 208 D E+ N K+S L++ G ++D C G + L Sbjct 221 ---DACEEVHLNPKGKYSRK-AYALLKGYRGVKSILFLDQYGCDYTGR----LAKGLEDY 272 Query 209 GKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKS-YELQTPFEIKLAKKF---- 263 G CTL E + ++E +AW+ +R ++ LQT I+ Sbjct 273 GD--CTLEEMKELFPVWCDSL---DNEVVVAWHVDRDPRAVMRLQTLATIRSIGYVGQPT 327 Query 264 -DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLS 318 D +G+ P + N+I+K + PR+ + L Y +C + Sbjct 328 EDLVDGDVVVREPAHLLAANAIVKRL-PRLVETMLYTDSSVTEFCY-KTKLCDCGFITQF 385 Query 319 TLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTKE-GATTCGYLPQNAVVKIYCPACH 374 + C D C W G+ + C + E A + G +P+ V+ Sbjct 386 GYVDCCGDACDFRGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVL-------- 437 Query 375 NSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVF--SYVGCHNKCAYWVPRASANIG 432 + + ++ G + FG V+ Y G W+P +++ Sbjct 438 ---------FTQSTDTVNRESFKLYGHAVVPFGSAVYWSPYPG------MWLPVIWSSVK 482 Query 433 C----NHTGVVGEG-SEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAF 487 +TGVVG D + L + V + G+ E+ AI+ Sbjct 483 SYADLTYTGVVGCKAIVQETDAICRSLYMDYVQ-HKCGNL---EQRAIL----------- 527 Query 488 VETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSI 547 GLD +Q++ + G++ + +L + F R+ Sbjct 528 -----GLDDVYHRQLLVNRGDYSL-----------------LLENVDLFVKR-----RAE 560 Query 548 FSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDA-MMFTSDLA------TNNLVVMAY 600 F+ T + + L +LDG+ S LI + FTS + T+ + MA Sbjct 561 FACKFATCGDGLVPL------LLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMAL 614 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRD------GWEIVKFIST 654 + V++ ++++ + G + + K + + K E + D GW + ++ Sbjct 615 LFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWLCYQLVN- 673 Query 655 CACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSII---IGGAKLKALNLGETFVT 711 V +T ++ E V+ F F + DS+ + G + + Sbjct 674 -GLFAVANGGITFLSDVPELVKNFVDKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLA 732 Query 712 HSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS 771 K +Y + + +MP+ E L GE P V + V + L Sbjct 733 GCK-VYEVVQ--KRLSAYVMPVGCN-EATCLVGEIEPAVVEDDVVDVVKAPLT-----YQ 783 Query 772 EAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPN-MMVTNNTFTLKGGAPTKVTFGDD-T 829 + P +C+ + + + Y + N + + A KV F D Sbjct 784 GCCKPPTSFEKICVVDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCAGKKVEFNDKPK 843 Query 830 VIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE- 888 V E+ + + I F LD D VL++ CS + V+ ++E VV DAV TL P E Sbjct 844 VKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEH 903 Query 889 --LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQ 946 + T + L+ + YLFDE GE +A MYCSF PD++ DC + + + Sbjct 904 DVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDE----DCVAADVVDADE 959 Query 947 YEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIV 1006 + DD +A + QEED + Q V + D D V Sbjct 960 NQGDDADD------------SAALVTDTQEEDGV-AKGQVGVAESDARLDQVEAFDIEKV 1006 Query 1007 EVQPQLEMELTPVVQTIEV 1025 E E+ + Sbjct 1007 EDPILNELSAELNAPADKT 1025 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 115/252 (46%), Gaps = 18/252 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA + E+ D + Sbjct 1266 CITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVK 1325 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLLS 1150 G +VG +G NL K L++VGP+ + L+ AY++ N+ + ++ L+S Sbjct 1326 NQGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLIS 1385 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + V NV L +K+ +D + + K + ++A+ Sbjct 1386 AGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVIEKCQVTSIAGTKALSLQLAKNLCR 1445 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 +VK F T + S+ +C L+E + L ++ L ++ + + Sbjct 1446 DVK-FETNACDSLFSD--------SCFVSSYDVLQEVELLRHDIQLDDDARVFVQAHMDN 1496 Query 1264 HPDSATLVSDID 1275 P LV+ D Sbjct 1497 LPADWRLVNKFD 1508 Score = 46.3 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 45/239 (19%), Positives = 82/239 (34%), Gaps = 28/239 (12%) Query 1574 VDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDT-LRVEAF 1632 D + V S Q + D+ K++ +E P D T V AF Sbjct 978 EDGVAKGQVGVAESDARLDQV-----EAFDIEKVEDPILNELSAELNAPADKTYEDVLAF 1032 Query 1633 EYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNP 1692 + + L + + +K G S NC+L + L+ +Q + L+F Sbjct 1033 DAIY---SEALSAFYAVPGDETHFKVC---GFYSPAIERTNCWLRSTLIVMQSLPLEFKD 1086 Query 1693 PALQDAYYRARAGEAANFCALILAYCNKTVGEL--GDVRETMSYLFQHANLDSCKRVLNV 1750 +Q + ++ F ++ K++ G V + + S K N Sbjct 1087 LEMQKLWLSYKSSYNKEFVDKLVKSVPKSIILPQGGYVADFAYFFLSQ---CSFKAYANW 1143 Query 1751 VCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSA 1809 C C L+G++A+ + G + V C CG T L+ + P+ + Sbjct 1144 RCLKCDM-DLKLQGLDAMFFYGDV--------VSHVCKCGTGMT--LLSADIPYTLHFG 1191 >sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus (strain 2) OX=76344 GN=1a PE=3 SV=1 Length=4416 Score = 3669 bits (9514), Expect = 0.0, Method: Composition-based stats. Identities = 1087/2986 (36%), Positives = 1623/2986 (54%), Gaps = 164/2986 (5%) Query 1513 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 1565 DW + + G+ +K G+ V + +G +V + ++ LL+ Sbjct 1500 DWRLVNKFDSVDGVRTVKYFECPGEIFVSSQGKKFGYVQNGSFKVASVSQIRALLA---- 1555 Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1556 NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLS 1615 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A D L +Y + L KW + K ++NNCY+ A L LQ Sbjct 1616 AADLVAVTDAFGFDEPQLLKYYNMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1674 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 + LKF+ Q+A+ R+G+ F +L+LA + E D + M + + A+L Sbjct 1675 LSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSGAT 1734 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 VCK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF+ Sbjct 1735 CDFEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYTIACTCGNKLV-HCTQLNVPFL 1792 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1793 ICSNKPEGKKLPDDV-VAANIFTGG-SLGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTD 1850 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPN-- 1922 Y +N T + K T+ LD V C E +P L YY + Y+T +PI + + Sbjct 1851 CLYLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYT-KPIIKAQFRTFEKVE 1909 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I A+ N G+ E K+T +P GDVV Y + Sbjct 1910 GVYTNFKLVGHSI--AEKFNAKLGFDCNSPFTEYKITEWPTATGDVVLASDDLYVSRYSG 1967 Query 1982 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD-------VLKS 2030 G KP++W H + TY +P+ C ++ PV+ S D VL + Sbjct 1968 GCVTFGKPVIWLGHEEASLKSLTYFNRPSVVC-ENKFNVLPVDVSEPTDKGPVPAAVLVT 2026 Query 2031 EDAQGM---DNLACEDLKPVSEEVVENPTI---------QKDVLECNV----KTTEVVGD 2074 G A E S+ VV+ DV E + K +V Sbjct 2027 GALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVEDS 2086 Query 2075 IILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVP 2134 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2087 VVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELSRLVNSPT------------- 2133 Query 2135 WDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTLLLQLCT 2181 + Y K + K+V ++ R + C + + +FF Sbjct 2134 ---VREYVKWGMTKIVIPAKLVLLRDEKQEFVAPKVVKAKVIACYSAVKWFFLYCFSWIK 2190 Query 2182 FTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN--------IIIWF 2233 F N+ K T +A K C A N L++ N++ + ++WF Sbjct 2191 F----NTDNKVIYTTEVAS---KLTFNLCCLAFKNALQTFNWNVVSRGFFLVATVFLLWF 2243 Query 2234 --LLLSVCLGSLI---------YSTAALGVLMSNLGMPSYCTGYRE---GYLNSTNVTIA 2279 L +V L + + + + G+ + C Y+ GY +S Sbjct 2244 NFLYANVILSDFYLPNIGFFPTFVGQIVAWVKTTFGIFTLCDLYQVSDVGYRSS------ 2297 Query 2280 TYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLAYILFTR 2336 +C GS+ C +C SG D LD Y ++ +Q + SF + ++ F LV E + Y L+T Sbjct 2298 -FCNGSMVCELCFSGFDMLDNYDAINVVQHVVDRRVSFDY-ISLFKLVVELVIGYSLYTV 2355 Query 2337 FFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVW 2394 FY L MQL ++ F+ + W + + M P ++R YI + Y ++ Sbjct 2356 CFYPLFGLIGMQLLTTWLPEFFMLETMHWSARFFVFVANMLPAFTLLRFYIVVTAMYKIF 2415 Query 2395 KSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVN 2454 HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNC+N Sbjct 2416 CLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTGFCAKHQWNCLN 2475 Query 2455 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYE 2514 C F G+TFI+ E A DLS + KRP+NPTD + Y+V V S+ L++++ GQ+ Y+ Sbjct 2476 CSAFGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYD 2535 Query 2515 RHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQ 2574 S S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P+LL+++ Sbjct 2536 DVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLLVEK 2593 Query 2575 ALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFI 2634 L++ V+ MFD YV++ +V + L + V A L + V L+ V+ TFI Sbjct 2594 KLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFI 2653 Query 2635 SAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACID 2693 AR+ +DSDVETK + + + + + ++ T +SCNN + TY K + + DLG I Sbjct 2654 GCARRKCAIDSDVETKSITKSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQ 2713 Query 2694 CSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNV 2753 +A+H+ A VAK+ N+A IW+V F LS L+ ++R A K L KLT V + Sbjct 2714 NNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPI 2773 Query 2754 VTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAID 2813 +TT +LKGG + + L+ L V L+ V + + P + + K +K ID Sbjct 2774 LTTPFSLKGGAVFSKVLQWLFVVNLICFIV---LWALMPTYAVHKSDMQLPLYASFKVID 2830 Query 2814 GGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPG 2871 GV RD+ TD CFANK FD W+ G Y N +ACP++ AVI +++G+ + +P Sbjct 2831 NGVLRDVTVTDACFANKFIQFDQWYESTFGLVYYRNSRACPVVVAVIDQDIGYTLFNVPT 2890 Query 2872 TILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVP 2931 +LR LHF+ F+ CYTP I Y +F S CVL++ CT+ A G P P Sbjct 2891 KVLRY-GFHVLHFITHAFATDSVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHP 2949 Query 2932 YCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYCRHGTCE 2990 YCY ++ + Y+SL P RY L + + I+FP EG VR+V T YCR G CE Sbjct 2950 YCYTEGIMHNASLYDSLAPHVRYNLANSNGYIRFPEVVSEGIVRIVRTRSMTYCRVGLCE 3009 Query 2991 RSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAG 3050 +E GVC + + WVLNN YYR++PG FCG +A +L+ + L++PI ++AS VAG Sbjct 3010 DAEEGVCFNFNSSWVLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAG 3069 Query 3051 GIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYL 3110 I+AI+V YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L +Y+ Y Sbjct 3070 AILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYF 3129 Query 3111 YLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGV 3170 Y T Y +++S + H+QW+VM+ ++P W I Y+ + + H W FS R++ Sbjct 3130 YTTLYFPSEISVVMHLQWLVMYGAIMPLWFCIIYVAVVVSNHALWLFS--YCRKLGTEVR 3187 Query 3171 SFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAA 3230 S TFEE +L TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAA Sbjct 3188 SDGTFEEMSLTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAA 3245 Query 3231 CCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTT 3289 C LAKA+ F+ N+G+DVLYQPP S+T++ LQSG KM FP+ KVE C+V VT G T Sbjct 3246 CSQLAKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVFPTSKVEPCVVSVTYGNMT 3305 Query 3290 LNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCV 3349 LNGLWLDD VYCPRHVIC+S DM +P+Y +LL R + +F V +G + L V+ + MQ + Sbjct 3306 LNGLWLDDKVYCPRHVICSSADMTDPDYSNLLCRVISSDFCVMSGRMSLTVMSYQMQGSL 3365 Query 3350 LKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCG 3409 L L V NP TPKY F ++PG+TF+VLA YNG G + MR ++TIKGSFL GSCG Sbjct 3366 LVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGKSQGAFHVTMRSSYTIKGSFLCGSCG 3425 Query 3410 SVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLA 3469 SVG+ + D V F YMH +EL TG H GTD GNFYGP+ D Q Q D T TVNV+A Sbjct 3426 SVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVA 3485 Query 3470 WLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA 3529 WLYAA++N WF+ + +L +FN+ AM + + D V L L++ TG+ V + A Sbjct 3486 WLYAAILNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQILA 3543 Query 3530 SLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILT 3589 ++K L +G G+ ILGS +LEDE TP DV +Q +GV QS R +KGT W+L + L Sbjct 3544 AIKRLY-SGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQSKRTRVVKGTCCWILASTLL 3602 Query 3590 SLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAY 3649 ++ +W++F ++ + L + + +FAM+ VKHKH +L +F++P L T+ Y Sbjct 3603 FCSIISAFVKWTMFMYVTTH-MLGVTLCALCFVSFAMLLVKHKHLYLTMFIMPVLCTLFY 3661 Query 3650 FN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRV 3708 N +V S+ WL ++ + + + +V ++ +T R++ D + Sbjct 3662 TNYLVVYKQSFRGLAYAWLSHFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVM 3721 Query 3709 WTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPI 3768 + + +++LV Y+G L++ + ++ + S+ Y+ + A+ ++ + + Sbjct 3722 FLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTYTWTTMLSLATAK-VIAKWLAVNVL 3778 Query 3769 FFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGL 3828 +F ++ ++L Y +GY C CY+G+ LLN FR+ LGVY+Y +S QE RYMN+ GL Sbjct 3779 YFTDVPQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGL 3838 Query 3829 LPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLW 3888 PP+NS +A LN KLLG+GG P I+V+ +QS+++DVKC +VVLL+ LQ L + SSSKLW Sbjct 3839 RPPRNSFEALVLNFKLLGIGGVPVIEVSQIQSRLTDVKCVNVVLLNCLQHLHIASSSKLW 3898 Query 3889 AQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQ 3942 C LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + + LQ Sbjct 3899 QYCSTLHNEILATSDLSVAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDSTVLQ 3958 Query 3943 AIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKL 4001 A+ SEF ++ S+ + A++ ++A A+G + + +K+L+K+ N+AKS ++RD A+ RKL Sbjct 3959 ALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARKL 4018 Query 4002 EKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNI 4061 E+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN Sbjct 4019 ERMADLALTNMYKEARINDKKSKVVSALQTMLFSMIRKLDNQALNSILDNAVKGCVPLNA 4078 Query 4062 IPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPN 4121 IP T+ L +++PD + D TYA +W IQ + DAD + QL+EI + N Sbjct 4079 IPSLTSNTLTIIVPDKQVFDQVVDNVYVTYAGNVWHIQSIQDADGAVKQLNEIDV----N 4134 Query 4122 LAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGR 4179 + WPL++ A R N S+V LQNNEL P LR +G+ T YYNTT G+ Sbjct 4135 ITWPLVIAANRHNEVSSVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGMGK 4192 Query 4180 FVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNR 4239 V A+LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L R Sbjct 4193 IVYAILSDCDGLKYTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLAR 4251 Query 4240 GMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLC 4299 G V+G+L++TVRLQAG ATE +NS + S CAF+VD K Y DY+ GG P+TNCVKMLC Sbjct 4252 GWVVGTLSSTVRLQAGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLC 4311 Query 4300 THTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCAND 4359 H GTG AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P D Sbjct 4312 DHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKD 4370 Query 4360 PVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 PV + L + VC VCG W+ CSC QS D +FLNGF V Sbjct 4371 PVSYVLTHDVCQVCGFWRDGSCSCVGTG-SQFQSKDT-NFLNGFGV 4414 Score = 622 bits (1605), Expect = 3e-177, Method: Composition-based stats. Identities = 227/1099 (21%), Positives = 389/1099 (35%), Gaps = 194/1099 (18%) Query 2 ESLVPGFNEKTHVQLS---LPVLQ-------VRDVLVRGFGDSVEEVLSEARQHLKDGTC 51 E G HV++ LP L+ +RD+ V + V + L+ G+ Sbjct 46 EPKTKGKTLINHVRVDCSRLPALECCVQSAIIRDIFV---DEDPLNVEASTMMALQFGSA 102 Query 52 GLVEVEK----------GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQY 97 LV+ K GVLP+ +F + T HV +L + +G+ Sbjct 103 VLVKPSKRLSIQAWAKLGVLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCL 162 Query 98 GRSGETLGVLVPHVGEIPVAYRK------VLLRKNGNKGA---GGHSYGADLKSFDLGDE 148 G +G +G VP V IP ++ +LLRK GNKG+ G + +D E Sbjct 163 G-NGRFIGWFVP-VTAIPAYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVE 220 Query 149 LGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARA 208 D E+ N K+S L++ G ++D C G + L Sbjct 221 ---DACEEVHLNPKGKYSRK-AYALLKGYRGVKSILFLDQYGCDYTGR----LAKGLEDY 272 Query 209 GKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKS-YELQTPFEIKLAKKF---- 263 G CTL E + ++E +AW+ +R ++ LQT I+ Sbjct 273 GD--CTLEEMKELFPVWCDSL---DNEVVVAWHVDRDPRAVMRLQTLATIRSIGYVGQPT 327 Query 264 -DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLS 318 D +G+ P + N+I+K + PR+ + L Y +C + Sbjct 328 EDLVDGDVVVREPAHLLAANAIVKRL-PRLVETMLYTDSSVTEFCY-KTKLCDCGFITQF 385 Query 319 TLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTKE-GATTCGYLPQNAVVKIYCPACH 374 + C D C W G+ + C + E A + G +P+ V+ Sbjct 386 GYVDCCGDACDFRGWVPGNMMDGFLCPGCSKSYMPWELEAQSSGVIPKGGVL-------- 437 Query 375 NSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVF--SYVGCHNKCAYWVPRASANIG 432 + + ++ G + FG V+ Y G W+P +++ Sbjct 438 ---------FTQSTDTVNRESFKLYGHAVVPFGSAVYWSPYPG------MWLPVIWSSVK 482 Query 433 C----NHTGVVGEG-SEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAF 487 +TGVVG D + L + V + G+ E+ AI+ Sbjct 483 SYADLTYTGVVGCKAIVQETDAICRSLYMDYVQ-HKCGNL---EQRAIL----------- 527 Query 488 VETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEAARVVRSI 547 GLD +Q++ + G++ + +L + F R+ Sbjct 528 -----GLDDVYHRQLLVNRGDYSL-----------------LLENVDLFVKR-----RAE 560 Query 548 FSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDA-MMFTSDLA------TNNLVVMAY 600 F+ T + + L +LDG+ S LI + FTS + T+ + MA Sbjct 561 FACKFATCGDGLVPL------LLDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMAL 614 Query 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRD------GWEIVKFIST 654 + V++ ++++ + G + + K + + K E + D GW + ++ Sbjct 615 LFMHDVKVATKYVKKVTGKLAVRFKALGVAVVRKITEWFDLAVDTAASAAGWLCYQLVN- 673 Query 655 CACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSII---IGGAKLKALNLGETFVT 711 V +T ++ E V+ F F + DS+ + G + + Sbjct 674 -GLFAVANGGITFLSDVPELVKNFVDKFKVFFKVLIDSMSVSVLSGLTVVKTASNRVCLA 732 Query 712 HSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS 771 K +Y + + +MP+ E L GE P V + V + L Sbjct 733 GCK-VYEVVQ--KRLSAYVMPVGCN-EATCLVGEIEPAVVEDDVVDVVKAPLT-----YQ 783 Query 772 EAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPN-MMVTNNTFTLKGGAPTKVTFGDD-T 829 + P +C+ + + + Y + N + + A KV F D Sbjct 784 GCCKPPTSFEKICVVDKLYMAKCGDQFYPVVVDNDTIGVLDQCWRFPCAGKKVEFNDKPK 843 Query 830 VIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE- 888 V E+ + + I F LD D VL++ CS + V+ ++E VV DAV TL P E Sbjct 844 VKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEH 903 Query 889 --LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQ 946 + T + L+ + YLFDE GE +A MYCSF PD++ DC + + + Sbjct 904 DVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPDDE----DCVAADVVDADE 959 Query 947 YEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIV 1006 + DD +A + QEED + Q V + D D V Sbjct 960 NQGDDADD------------SAALVTDTQEEDGV-AKGQVGVAESDARLDQVEAFDIEKV 1006 Query 1007 EVQPQLEMELTPVVQTIEV 1025 E E+ + Sbjct 1007 EDPILNELSAELNAPADKT 1025 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 115/252 (46%), Gaps = 18/252 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA + E+ D + Sbjct 1266 CITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVK 1325 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLLS 1150 G +VG +G NL K L++VGP+ + L+ AY++ N+ + ++ L+S Sbjct 1326 NQGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLIS 1385 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + V NV L +K+ +D + + K + ++A+ Sbjct 1386 AGIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVIEKCQVTSIAGTKALSLQLAKNLCR 1445 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 +VK F T + S+ +C L+E + L ++ L ++ + + Sbjct 1446 DVK-FETNACDSLFSD--------SCFVSSYDVLQEVELLRHDIQLDDDARVFVQAHMDN 1496 Query 1264 HPDSATLVSDID 1275 P LV+ D Sbjct 1497 LPADWRLVNKFD 1508 Score = 46.3 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 45/239 (19%), Positives = 82/239 (34%), Gaps = 28/239 (12%) Query 1574 VDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDT-LRVEAF 1632 D + V S Q + D+ K++ +E P D T V AF Sbjct 978 EDGVAKGQVGVAESDARLDQV-----EAFDIEKVEDPILNELSAELNAPADKTYEDVLAF 1032 Query 1633 EYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNP 1692 + + L + + +K G S NC+L + L+ +Q + L+F Sbjct 1033 DAIY---SEALSAFYAVPGDETHFKVC---GFYSPAIERTNCWLRSTLIVMQSLPLEFKD 1086 Query 1693 PALQDAYYRARAGEAANFCALILAYCNKTVGEL--GDVRETMSYLFQHANLDSCKRVLNV 1750 +Q + ++ F ++ K++ G V + + S K N Sbjct 1087 LEMQKLWLSYKSSYNKEFVDKLVKSVPKSIILPQGGYVADFAYFFLSQ---CSFKAYANW 1143 Query 1751 VCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSA 1809 C C L+G++A+ + G + V C CG T L+ + P+ + Sbjct 1144 RCLKCDM-DLKLQGLDAMFFYGDV--------VSHVCKCGTGMT--LLSADIPYTLHFG 1191 >sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 3666 bits (9507), Expect = 0.0, Method: Composition-based stats. Identities = 1075/2989 (36%), Positives = 1612/2989 (54%), Gaps = 172/2989 (6%) Query 1513 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 1565 DW + + G+ +K G+ V + +G + + ++ LL+ Sbjct 1552 DWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLA---- 1607 Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1608 NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLS 1667 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A + D L +Y S L KW + K ++NNCY+ A L LQ Sbjct 1668 AADLAAVKDAFGFDEPQLLQYYSMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1726 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 + LKF + R+G+ F +L+LA + E D + + + A+L Sbjct 1727 LSLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGAT 1786 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 L +CK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF+ Sbjct 1787 CDLEFICK-CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLV-HCTQFNVPFL 1844 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1845 ICSNTPEGKKLPDDV-VAANIFTGG-SVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTD 1902 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPN-- 1922 Y +N T + TY LD V C P L YY + Y+T +PI + + Sbjct 1903 CLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVE 1961 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I A+ LN G+ E K+T +P GDVV Y + Sbjct 1962 GVYTNFKLVGHDI--AEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSG 2019 Query 1982 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD----------- 2026 G KP++W H + TY +P+ C ++ PV+ S D Sbjct 2020 GCVTFGKPVIWRGHEEASLKSLTYFNRPSVVC-ENKFNVLPVDVSEPTDRRPVPSAVLVT 2078 Query 2027 ---------VLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVG---- 2073 + +E + AC V +++V + V VK ++ G Sbjct 2079 GAASGADASAISTEPGTAKEQKACAS-DSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKP 2137 Query 2074 -----DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLA 2128 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2138 VKWNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPT------- 2190 Query 2129 AVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTL 2175 + Y K ++K++ ++ R + C + +F Sbjct 2191 ---------VREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLY 2241 Query 2176 LLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN------- 2228 F N+ K T +A K K C A N L++ N+S + Sbjct 2242 CFSWIKF----NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVAT 2294 Query 2229 -IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNS 2273 ++WF L +V L ++ + + + G+ + C Y+ GY +S Sbjct 2295 VFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSS 2354 Query 2274 TNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLA 2330 +C GS+ C +C SG D LD Y S+ +Q + SF + ++ F LV E + Sbjct 2355 -------FCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDY-ISLFKLVVELVIG 2406 Query 2331 YILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFA 2388 Y L+T FY L + MQL ++ F+ + W L + + M P ++R YI Sbjct 2407 YSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVT 2466 Query 2389 SFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLH 2448 + Y V+ HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H Sbjct 2467 AMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKH 2526 Query 2449 NWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKA 2508 WNC+NC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ Sbjct 2527 QWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERD 2586 Query 2509 GQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQP 2568 GQ+ Y+ S S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P Sbjct 2587 GQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRP 2644 Query 2569 ILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDN 2628 +L++++ L++ V+ MFD YV + +V + L + V A L + V L+ Sbjct 2645 MLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQ 2704 Query 2629 VLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRD 2687 V+ TF+ AR+ +DSDVETK + + + + + +EVT +SCNN + TY K + + D Sbjct 2705 VMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAAD 2764 Query 2688 LGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATT 2747 LG I +A+H+ + VAK+ N+A IW+V F LS L+ ++R A K L KLT Sbjct 2765 LGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQ 2824 Query 2748 RQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEII 2807 V ++TT +LKGG + + L+ L L+ V + + P + + K Sbjct 2825 EANVPILTTPFSLKGGAVFSRVLQWLFVANLICFIV---LWALMPTYAVHKSDMQLPLYA 2881 Query 2808 GYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFV 2865 +K ID GV RD++ TD CFANK FD W+ G Y N KACP++ AVI +++G Sbjct 2882 SFKVIDNGVLRDVSVTDACFANKFNQFDQWYESTFGLVYYRNSKACPVVVAVIDQDIGHT 2941 Query 2866 VPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDA 2925 + +P +LR LHF+ F+ CYTP I Y +F S CVL++ CT+ A Sbjct 2942 LFNVPTKVLRY-GFHVLHFITHAFATDRVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHA 3000 Query 2926 SGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYC 2984 G P PYCY V+ + Y SL P RY L + I+FP EG VRVV T YC Sbjct 3001 DGTPHPYCYTEGVMHNASLYSSLVPHVRYNLASSNGYIRFPEVVSEGIVRVVRTRSMTYC 3060 Query 2985 RHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDIS 3044 R G CE +E G+C + + WVLNN YYR++PG FCG +A +L+ + L+QPI ++ Sbjct 3061 RVGLCEEAEEGICFNFNSSWVLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVQPIDFFALT 3120 Query 3045 ASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGV 3104 AS VAG I+AI+V YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L + Sbjct 3121 ASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCL 3180 Query 3105 YSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRR 3164 Y+ Y Y T Y +++S + H+QW+VM+ ++P W I Y+ + + H W FS R+ Sbjct 3181 YACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCITYVAVVVSNHALWLFS--YCRK 3238 Query 3165 VVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 3224 + + S TFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT Sbjct 3239 IGTDVRSDGTFEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTA 3296 Query 3225 SYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQV 3283 +YREAAC LAKA+ F+ N+G+DVLYQPP S+T++ LQSG KM P+ KVE C+V V Sbjct 3297 TYREAACSQLAKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVSPTSKVEPCVVSV 3356 Query 3284 TCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH 3343 T G TLNGLWLDD VYCPRHVIC+S DM +P+Y +LL R ++ +F V + + L V+ + Sbjct 3357 TYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYPNLLCRVTSSDFCVMSDRMSLTVMSY 3416 Query 3344 SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSF 3403 MQ +L L V NP TPKY F ++PG+TF+VLA YNG P G + MR + TIKGSF Sbjct 3417 QMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGRPQGAFHVVMRSSHTIKGSF 3476 Query 3404 LNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI 3463 L GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ D Q Q D T Sbjct 3477 LCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQ 3536 Query 3464 TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIA 3523 TVNV+AWLYAA++N WF+ + +L +FN+ AM + + D V L L++ TG+ Sbjct 3537 TVNVVAWLYAAILNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVT 3594 Query 3524 VLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWL 3583 V + A++K L +G G+ ILGS +LEDE TP DV +Q +GV QS R IKGT W+ Sbjct 3595 VEQVLAAIKRL-HSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQSKRTRVIKGTCCWI 3653 Query 3584 LLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPS 3643 L + ++ +W++F ++ + L + + FAM+ +KHKH +L ++++P Sbjct 3654 LASTFLFCSIISAFVKWTMFMYVTTH-MLGVTLCALCFVIFAMLLIKHKHLYLTMYIMPV 3712 Query 3644 LATVAYFNMVY--MPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVY 3701 L T+ Y N + S+ WL ++ + + + +V ++ +T R++ Sbjct 3713 LCTLFYTNYLVVGYKQSFRGLAYAWLSYFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSIN 3772 Query 3702 DDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFM 3761 D ++ + +++LV Y+G L++ + ++ + S+ Y+ + A+ ++ Sbjct 3773 HDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTYTWTTMLSLATAK-VIAK 3829 Query 3762 CVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFR 3821 + ++F ++ ++L Y +GY C CY+G+ LLN FR+ LGVY+Y +S QE R Sbjct 3830 WLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR 3889 Query 3822 YMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRV 3881 YMN+ GL PP+NS +A LN KLLG+GG P I+V+ +QS+++DVKC +VVLL+ LQ L + Sbjct 3890 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQSRLTDVKCANVVLLNCLQHLHI 3949 Query 3882 ESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEML 3935 S+SKLW C LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + Sbjct 3950 ASNSKLWQYCSTLHNEILATSDLSVAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYV 4009 Query 3936 DNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRD 3994 + LQA+ SEF ++ S+ + A++ ++A A+G + + +K+L+K+ N+AKS ++RD Sbjct 4010 RDNTVLQALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERD 4069 Query 3995 AAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARD 4054 A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA Sbjct 4070 RAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVK 4129 Query 4055 GCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEI 4114 GCVPLN IP T+ L +++PD + D TYA +W IQ + DAD + QL+EI Sbjct 4130 GCVPLNAIPPLTSNTLTIIVPDKQVFDQVVDNVYVTYAPNVWHIQSIQDADGAVKQLNEI 4189 Query 4115 SMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYY 4172 +++ WPL+++A R N S V LQNNEL P LR +G+ YY Sbjct 4190 DVNS----TWPLVISANRHNEVSTVVLQNNELMPQKLRTQVVNSGSDMNCNIPTQ--CYY 4243 Query 4173 NTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIK 4232 NTT G+ V A+LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+K Sbjct 4244 NTTGTGKIVYAILSDCDGLKYTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVK 4302 Query 4233 GLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPIT 4292 G N L RG V+G+L++TVRLQAG ATE +NS +LS CAF+VD K Y DY+ GG P+T Sbjct 4303 GCNTLARGWVVGTLSSTVRLQAGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVT 4362 Query 4293 NCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQI 4352 NCVKMLC H GTG AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+ Sbjct 4363 NCVKMLCDHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQV 4422 Query 4353 PTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 P DPV + L + VC VCG W+ CSC QS D +FLN Sbjct 4423 PLG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVGTG-SQFQSKDT-NFLN 4468 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 248/1140 (22%), Positives = 410/1140 (36%), Gaps = 227/1140 (20%) Query 2 ESLVPGFNEKTHVQLS---LPVLQ-------VRDVLVRGFGDSVEEVLSEARQHLKDGTC 51 E V G HV++ LP L+ +RD+ V + ++V + L+ G+ Sbjct 46 EPKVKGKTLVNHVRVDCSRLPALECCVQSAIIRDIFV---DEDPQKVEASTMMALQFGSA 102 Query 52 GLVEVEK----------GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQY 97 LV+ K GVLP+ +F + T HV +L + +G+ Sbjct 103 VLVKPSKRLSVQAWAKLGVLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCL 162 Query 98 GRSGETLGVLVPHVGEIPVAYRK------VLLRKNGNKGA---GGHSYGADLKSFDLGDE 148 G +G +G VP V IP ++ +LLRK GNKG+ G + +D E Sbjct 163 G-NGRFIGWFVP-VTAIPEYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVE 220 Query 149 LGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARA 208 D E+ N K+S L+R G +VD C G C+ L Sbjct 221 ---DACEEVHLNPRGKYSCK-AYALLRGYRGVKPILFVDQYGCDYTG----CLAKGLEDY 272 Query 209 GKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKS-YELQTPFEIKLAKKF---- 263 G TLSE + R ++E +AW+ +R ++ LQT ++ + Sbjct 273 GDL--TLSEMKELSPVWRDSL---DNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPI 327 Query 264 -DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLS 318 D +G+ P + N+I+K + PR+ + L Y +S E C Sbjct 328 EDMVDGDVVMREPAHLLAPNAIVKRL-PRLVETML----------YTDSSVTE---FCYK 373 Query 319 TLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPAC----- 373 T + CD CG + Q G +V + CG G++P N + CP C Sbjct 374 TKL-CD-CGFIT-QFG-YVDCCGDTCGFR----------GWVPGNMMDGFPCPGCCKSYM 419 Query 374 ------HNSEVGPEHSL--AEYHNESGLKTILRKGGRTIAFGGCVF--SYVGCHNKCAYW 423 +S V PE + + + ++ G + FGG + Y G W Sbjct 420 PWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPG------MW 473 Query 424 VPRASANIGC----NHTGVVGEG-SEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILA 478 +P +++ +TGVVG D + L + V + G+ E+ AI+ Sbjct 474 LPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRFLYMDYVQ-HKCGNL---EQRAIL-- 527 Query 479 SFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFAS 538 GLD +Q++ + G++ + +L + F Sbjct 528 --------------GLDDVYHRQLLVNRGDYSL-----------------LLENVDLFVK 556 Query 539 EAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDA-MMFTSDLAT----- 592 R+ F+ T + + L +LDG+ S LI + FTS + Sbjct 557 R-----RAEFACKFATCGDGLVPL------LLDGLVPRSYYLIKSGQAFTSLMVNFSREV 605 Query 593 -NNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRD------G 645 + + MA + V++ ++++ + G V + K + + K E + D G Sbjct 606 VDMCMDMALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVRKITEWFDLAVDTAASAAG 665 Query 646 WEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSII---IGGAKLKA 702 W + ++ V ++T +E+ E V+ F F + DS+ + G + Sbjct 666 WLCYQLVN--GLFAVANGVITFIQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVK 723 Query 703 LNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGD 762 + SK +Y + +MP+ E L GE P + V + Sbjct 724 TASNRVCLAGSK-VYEVVQ--KSLPAYIMPVGC-SEATCLVGEIEPAVFEDDVVDVVKAP 779 Query 763 LQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPN-MMVTNNTFTLKGGAPT 821 L + P +CI + + + Y + N + + A Sbjct 780 LT-----YQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCAGK 834 Query 822 KVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVI 880 KV F D V EV + + I F LD D VL++ CS + V+ ++E VV DAV Sbjct 835 KVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVE 894 Query 881 KTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 937 TL P E + T + L+ YLFDE GE +AS MYCSF PDED C Sbjct 895 STLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED-----CV 949 Query 938 EEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL------DDDSQQTVGQQ 991 + + + + A + + QEED + DS+ V Sbjct 950 ATDVVYADENQDDD------------ADDPVVLVADTQEEDGVAREQVDSADSEICVAHT 997 Query 992 DGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKK 1051 G E + E + EV + + AD ++ Sbjct 998 GGQE---------MTEPDVVGSQTPIASAEETEVGEACDREGIAEVKATVCADALDACPD 1048 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 68/252 (27%), Positives = 117/252 (46%), Gaps = 18/252 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA A E+ D + Sbjct 1318 CITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVK 1377 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 G +VGG +G L K L++VGP+ E LL+ AY++ N+ + ++ L+S Sbjct 1378 AQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLIS 1437 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1438 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQLAKNLCR 1497 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 +VK F+T + S+ ++ L+E + L ++ L ++ N + Sbjct 1498 DVK-FVTNACSSLFS--------ESSFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1548 Query 1264 HPDSATLVSDID 1275 P LV+ D Sbjct 1549 LPTDWRLVNKFD 1560 Score = 51.3 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 23/205 (11%) Query 1603 DVTKIKPHNSHEGKTFYVLPNDDT-LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQV 1661 D+ K++ E +T P D T V AF+ + L + + + +K Sbjct 1054 DIEKVEDSILSELQTELNAPADKTYEDVLAFDAIY---SETLSAFYAVPSDETHFKVC-- 1108 Query 1662 NGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKT 1721 G S NC+L + L+ +Q + L+F +Q + +AG F ++ K+ Sbjct 1109 -GFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKS 1167 Query 1722 VGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQF 1779 + G V + + S K N C CG + L+G++AV + G + Sbjct 1168 IILPQGGYVADFAYFFLSQ---CSFKVHANWRCLKCGM-ELKLQGLDAVFFYGDV----- 1218 Query 1780 KKGVQIPCTCGKQATKYLVQQESPF 1804 V C CG T L+ + P+ Sbjct 1219 ---VSHMCKCGNSMT--LLSADIPY 1238 >sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM) OX=11144 GN=1a PE=1 SV=1 Length=4474 Score = 3666 bits (9506), Expect = 0.0, Method: Composition-based stats. Identities = 1078/2993 (36%), Positives = 1615/2993 (54%), Gaps = 172/2993 (6%) Query 1513 DWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDG--EVITFDNLKTLLSLREV 1565 DW + + G+ +K G+ V + +G + + ++ LL+ Sbjct 1552 DWRLVNKFDSVDGVRTIKYFECPGEVFVSSQGKKFGYVQNGSFKEASVSQIRALLA---- 1607 Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + V TVD +N + V +G+ G + DG +VTK++ H+GK F+ Sbjct 1608 NKVDVLCTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLS 1667 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 + A + D L +Y S L KW + K ++NNCY+ A L LQ Sbjct 1668 AADLAAVKDAFGFDEPQLLQYYSMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQH 1726 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 + LKF + R+G+ F +L+LA + E D + + + A+L Sbjct 1727 LSLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGAT 1786 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFV 1805 L +CK CG +Q KGV+AVM+ GTL KG I CTCG + + Q PF+ Sbjct 1787 CDLEFICK-CGVKQEQRKGVDAVMHFGTLDKSGLVKGYNIACTCGDKLV-HCTQFNVPFL 1844 Query 1806 MMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD 1865 + S P +L A+ +TG GHY H+ K D ++K SE KG TD Sbjct 1845 ICSNTPEGKKLPDDV-VAANIFTGG-SVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTD 1902 Query 1866 VFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYPN-- 1922 Y +N T + TY LD V C P L YY + Y+T +PI + + Sbjct 1903 CLYLKNLKQTFSSVLTTYYLDDVKCVAYKPDLSQYYCESGKYYT-KPIIKAQFRTFEKVE 1961 Query 1923 ASFDNFKFVCDNIKFADDLNQLTGYK-KPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 + NFK V +I A+ LN G+ E K+T +P GDVV Y + Sbjct 1962 GVYTNFKLVGHDI--AEKLNAKLGFDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSG 2019 Query 1982 GAKLLHKPIVW--HVNNATNKATY--KPNTWCIRCLWSTKPVETSNSFD----------- 2026 G KP++W H + TY +P+ C ++ PV+ S D Sbjct 2020 GCVTFGKPVIWRGHEEASLKSLTYFNRPSVVC-ENKFNVLPVDVSEPTDRRPVPSAVLVT 2078 Query 2027 ---------VLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVG---- 2073 + +E + AC V +++V + V VK ++ G Sbjct 2079 GAASGADASAISTEPGTAKEQKACAS-DSVEDQIVMEAQKKSSVTTVAVKEVKLNGVKKP 2137 Query 2074 -----DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLA 2128 +++ + K+ + + D+ ++ + NELSR++ T Sbjct 2138 VKWNCSVVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWTANELSRLINSPT------- 2190 Query 2129 AVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNR-------------VCTNYMPYFFTL 2175 + Y K ++K++ ++ R + C + +F Sbjct 2191 ---------VREYVKWGMSKLIIPANLLLLRDEKQEFVAPKVVKAKAIACYGAVKWFLLY 2241 Query 2176 LLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLIN------- 2228 F N+ K T +A K K C A N L++ N+S + Sbjct 2242 CFSWIKF----NTDNKVIYTTEVAS---KLTFKLCCLAFKNALQTFNWSVVSRGFFLVAT 2294 Query 2229 -IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLGMPSYCTGYRE---GYLNS 2273 ++WF L +V L ++ + + + G+ + C Y+ GY +S Sbjct 2295 VFLLWFNFLYANVILSDFYLPNIGPLPMFVGQIVAWVKTTFGVLTICDFYQVTDLGYRSS 2354 Query 2274 TNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS---SFKWDLTAFGLVAEWFLA 2330 +C GS+ C +C SG D LD Y S+ +Q + SF + ++ F LV E + Sbjct 2355 -------FCNGSMVCELCFSGFDMLDNYESINVVQHVVDRRVSFDY-ISLFKLVVELVIG 2406 Query 2331 YILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFA 2388 Y L+T FY L + MQL ++ F+ + W L + + M P ++R YI Sbjct 2407 YSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANMLPAFTLLRFYIVVT 2466 Query 2389 SFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLH 2448 + Y V+ HV+ GC+ C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H Sbjct 2467 AMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKH 2526 Query 2449 NWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKA 2508 WNC+NC+++ G+TFI+ E A DLS + KRP+NPTD + Y V V S+ L++++ Sbjct 2527 QWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLFYERD 2586 Query 2509 GQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQP 2568 GQ+ Y+ S S FV+++ L + KG +V+V + ++ +++ +A+V+Y+Q + +P Sbjct 2587 GQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRP 2644 Query 2569 ILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDN 2628 +L++++ L++ V+ MFD YV + +V + L + V A L + V L+ Sbjct 2645 MLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTSFVNAAHNSLKEGVQLEQ 2704 Query 2629 VLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRD 2687 V+ TF+ AR+ +DSDVETK + + + + + +EVT +SCNN + TY K + + D Sbjct 2705 VMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAGVEVTDESCNNLVPTYVKSDTIVAAD 2764 Query 2688 LGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATT 2747 LG I +A+H+ + VAK+ N+A IW+V F LS L+ ++R A K L KLT Sbjct 2765 LGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQ 2824 Query 2748 RQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEII 2807 V ++TT +LKGG + + L+ L L+ V + + P + + K Sbjct 2825 EANVPILTTPFSLKGGAVFSRVLQWLFVANLICFIV---LWALMPTYAVHKSDMQLPLYA 2881 Query 2808 GYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFV 2865 +K ID GV RD++ TD CFANK FD W+ G Y N KACP++ AVI +++G Sbjct 2882 SFKVIDNGVLRDVSVTDACFANKFNQFDQWYESTFGLVYYRNSKACPVVVAVIDQDIGHT 2941 Query 2866 VPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDA 2925 + +P +LR LHF+ F+ CYTP I Y +F S CVL++ CT+ A Sbjct 2942 LFNVPTKVLRY-GFHVLHFITHAFATDRVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHA 3000 Query 2926 SGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDSEYC 2984 G P PYCY V+ + Y SL P RY L + I+FP EG VRVV T YC Sbjct 3001 DGTPHPYCYTEGVMHNASLYSSLVPHVRYNLASSNGYIRFPEVVSEGIVRVVRTRSMTYC 3060 Query 2985 RHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDIS 3044 R G CE +E G+C + + WVLNN YYR++PG FCG +A +L+ + L+QPI ++ Sbjct 3061 RVGLCEEAEEGICFNFNSSWVLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVQPIDFFALT 3120 Query 3045 ASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGV 3104 AS VAG I+AI+V YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L + Sbjct 3121 ASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCL 3180 Query 3105 YSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRR 3164 Y+ Y Y T Y +++S + H+QW+VM+ ++P W I Y+ + + H W FS R+ Sbjct 3181 YACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCITYVAVVVSNHALWLFS--YCRK 3238 Query 3165 VVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 3224 + + S TFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT Sbjct 3239 IGTDVRSDGTFEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTA 3296 Query 3225 SYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQV 3283 +YREAAC LAKA+ F+ N+G+DVLYQPP S+T++ LQSG KM P+ KVE C+V V Sbjct 3297 TYREAACSQLAKAMETFNHNNGNDVLYQPPTASVTTSFLQSGIVKMVSPTSKVEPCVVSV 3356 Query 3284 TCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGH 3343 T G TLNGLWLDD VYCPRHVIC+S DM +P+Y +LL R ++ +F V + + L V+ + Sbjct 3357 TYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYPNLLCRVTSSDFCVMSDRMSLTVMSY 3416 Query 3344 SMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSF 3403 MQ +L L V NP TPKY F ++PG+TF+VLA YNG P G + MR + TIKGSF Sbjct 3417 QMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNGRPQGAFHVVMRSSHTIKGSF 3476 Query 3404 LNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI 3463 L GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ D Q Q D T Sbjct 3477 LCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQ 3536 Query 3464 TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIA 3523 TVNV+AWLYAA++N WF+ + +L +FN+ AM + + D V L L++ TG+ Sbjct 3537 TVNVVAWLYAAILNRCNWFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVT 3594 Query 3524 VLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWL 3583 V + A++K L +G G+ ILGS +LEDE TP DV +Q +GV QS R IKGT W+ Sbjct 3595 VEQVLAAIKRL-HSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQSKRTRVIKGTCCWI 3653 Query 3584 LLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPS 3643 L + ++ +W++F ++ + L + + FAM+ +KHKH +L ++++P Sbjct 3654 LASTFLFCSIISAFVKWTMFMYVTTH-MLGVTLCALCFVIFAMLLIKHKHLYLTMYIMPV 3712 Query 3644 LATVAYFNMVY--MPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVY 3701 L T+ Y N + S+ WL ++ + + + +V ++ +T R++ Sbjct 3713 LCTLFYTNYLVVGYKQSFRGLAYAWLSYFVPAVDYTYMDEVLYGVVLLVAMVFVTMRSIN 3772 Query 3702 DDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFM 3761 D ++ + +++LV Y+G L++ + ++ + S+ Y+ + A+ ++ Sbjct 3773 HDVFSTMFLVGRLVSLVSMWYFGANLEEEVLLF--LTSLFGTYTWTTMLSLATAK-VIAK 3829 Query 3762 CVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFR 3821 + ++F ++ ++L Y +GY C CY+G+ LLN FR+ LGVY+Y +S QE R Sbjct 3830 WLAVNVLYFTDIPQIKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELR 3889 Query 3822 YMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRV 3881 YMN+ GL PP+NS +A LN KLLG+GG P I+V+ +QS+++DVKC +VVLL+ LQ L + Sbjct 3890 YMNANGLRPPRNSFEALMLNFKLLGIGGVPVIEVSQIQSRLTDVKCANVVLLNCLQHLHI 3949 Query 3882 ESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEML 3935 S+SKLW C LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + Sbjct 3950 ASNSKLWQYCSTLHNEILATSDLSVAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYV 4009 Query 3936 DNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRD 3994 + LQA+ SEF ++ S+ + A++ ++A A+G + + +K+L+K+ N+AKS ++RD Sbjct 4010 RDNTVLQALQSEFVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERD 4069 Query 3995 AAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARD 4054 A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA Sbjct 4070 RAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVK 4129 Query 4055 GCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEI 4114 GCVPLN IP T+ L +++PD + D TYA +W IQ + DAD + QL+EI Sbjct 4130 GCVPLNAIPPLTSNTLTIIVPDKQVFDQVVDNVYVTYAPNVWHIQSIQDADGAVKQLNEI 4189 Query 4115 SMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYY 4172 +++ WPL+++A R N S V LQNNEL P LR +G+ YY Sbjct 4190 DVNS----TWPLVISANRHNEVSTVVLQNNELMPQKLRTQVVNSGSDMNCNIPTQ--CYY 4243 Query 4173 NTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIK 4232 NTT G+ V A+LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+K Sbjct 4244 NTTGTGKIVYAILSDCDGLKYTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVK 4302 Query 4233 GLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPIT 4292 G N L RG V+G+L++TVRLQAG ATE +NS +LS CAF+VD K Y DY+ GG P+T Sbjct 4303 GCNTLARGWVVGTLSSTVRLQAGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVT 4362 Query 4293 NCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQI 4352 NCVKMLC H GTG AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+ Sbjct 4363 NCVKMLCDHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQV 4422 Query 4353 PTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 P DPV + L + VC VCG W+ CSC QS D +FLNGF V Sbjct 4423 PLG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVGTG-SQFQSKDT-NFLNGFGV 4472 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 248/1140 (22%), Positives = 410/1140 (36%), Gaps = 227/1140 (20%) Query 2 ESLVPGFNEKTHVQLS---LPVLQ-------VRDVLVRGFGDSVEEVLSEARQHLKDGTC 51 E V G HV++ LP L+ +RD+ V + ++V + L+ G+ Sbjct 46 EPKVKGKTLVNHVRVDCSRLPALECCVQSAIIRDIFV---DEDPQKVEASTMMALQFGSA 102 Query 52 GLVEVEK----------GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQY 97 LV+ K GVLP+ +F + T HV +L + +G+ Sbjct 103 VLVKPSKRLSVQAWAKLGVLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCL 162 Query 98 GRSGETLGVLVPHVGEIPVAYRK------VLLRKNGNKGA---GGHSYGADLKSFDLGDE 148 G +G +G VP V IP ++ +LLRK GNKG+ G + +D E Sbjct 163 G-NGRFIGWFVP-VTAIPEYAKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVE 220 Query 149 LGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARA 208 D E+ N K+S L+R G +VD C G C+ L Sbjct 221 ---DACEEVHLNPRGKYSCK-AYALLRGYRGVKPILFVDQYGCDYTG----CLAKGLEDY 272 Query 209 GKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKS-YELQTPFEIKLAKKF---- 263 G TLSE + R ++E +AW+ +R ++ LQT ++ + Sbjct 273 GDL--TLSEMKELSPVWRDSL---DNEVVVAWHVDRDPRAVMRLQTLATVRSIEYVGQPI 327 Query 264 -DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLS 318 D +G+ P + N+I+K + PR+ + L Y +S E C Sbjct 328 EDMVDGDVVMREPAHLLAPNAIVKRL-PRLVETML----------YTDSSVTE---FCYK 373 Query 319 TLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPAC----- 373 T + CD CG + Q G +V + CG G++P N + CP C Sbjct 374 TKL-CD-CGFIT-QFG-YVDCCGDTCGFR----------GWVPGNMMDGFPCPGCCKSYM 419 Query 374 ------HNSEVGPEHSL--AEYHNESGLKTILRKGGRTIAFGGCVF--SYVGCHNKCAYW 423 +S V PE + + + ++ G + FGG + Y G W Sbjct 420 PWELEAQSSGVIPEGGVLFTQSTDTVNRESFKLYGHAVVPFGGAAYWSPYPG------MW 473 Query 424 VPRASANIGC----NHTGVVGEG-SEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILA 478 +P +++ +TGVVG D + L + V + G+ E+ AI+ Sbjct 474 LPVIWSSVKSYSYLTYTGVVGCKAIVQETDAICRFLYMDYVQ-HKCGNL---EQRAIL-- 527 Query 479 SFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFAS 538 GLD +Q++ + G++ + +L + F Sbjct 528 --------------GLDDVYHRQLLVNRGDYSL-----------------LLENVDLFVK 556 Query 539 EAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDA-MMFTSDLAT----- 592 R+ F+ T + + L +LDG+ S LI + FTS + Sbjct 557 R-----RAEFACKFATCGDGLVPL------LLDGLVPRSYYLIKSGQAFTSLMVNFSREV 605 Query 593 -NNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRD------G 645 + + MA + V++ ++++ + G V + K + + K E + D G Sbjct 606 VDMCMDMALLFMHDVKVATKYVKKVTGKVAVRFKALGIAVVRKITEWFDLAVDTAASAAG 665 Query 646 WEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSII---IGGAKLKA 702 W + ++ V ++T +E+ E V+ F F + DS+ + G + Sbjct 666 WLCYQLVN--GLFAVANGVITFIQEVPELVKNFVDKFKTFFKVLIDSMSVSILSGLTVVK 723 Query 703 LNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGD 762 + SK +Y + +MP+ E L GE P + V + Sbjct 724 TASNRVCLAGSK-VYEVVQ--KSLPAYIMPVGC-SEATCLVGEIEPAVFEDDVVDVVKAP 779 Query 763 LQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPN-MMVTNNTFTLKGGAPT 821 L + P +CI + + + Y + N + + A Sbjct 780 LT-----YQGCCKPPSSFEKICIVDKLYMAKCGDQFYPVVVDNDTVGVLDQCWRFPCAGK 834 Query 822 KVTFGDD-TVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVI 880 KV F D V EV + + I F LD D VL++ CS + V+ ++E VV DAV Sbjct 835 KVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVE 894 Query 881 KTLQPVSE---LLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 937 TL P E + T + L+ YLFDE GE +AS MYCSF PDED C Sbjct 895 STLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED-----CV 949 Query 938 EEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL------DDDSQQTVGQQ 991 + + + + A + + QEED + DS+ V Sbjct 950 ATDVVYADENQDDD------------ADDPVVLVADTQEEDGVAREQVDSADSEICVAHT 997 Query 992 DGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKK 1051 G E + E + EV + + AD ++ Sbjct 998 GGQE---------MTEPDVVGSQTPIASAEETEVGEACDREGIAEVKATVCADALDACPD 1048 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 68/252 (27%), Positives = 117/252 (46%), Gaps = 18/252 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV D+++ ++V V+VN AN + HG GVAGA+ KA A E+ D + Sbjct 1318 CITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVK 1377 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 G +VGG +G L K L++VGP+ E LL+ AY++ N+ + ++ L+S Sbjct 1378 AQGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLIS 1437 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + V NV L +++ +D + + K + ++A+ Sbjct 1438 AGIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVIEKCQVTSVAGTKALSFQLAKNLCR 1497 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 +VK F+T + S+ ++ L+E + L ++ L ++ N + Sbjct 1498 DVK-FVTNACSSLFS--------ESSFVSSYDVLQEVEALRHDIQLDDDARVFVQANMDC 1548 Query 1264 HPDSATLVSDID 1275 P LV+ D Sbjct 1549 LPTDWRLVNKFD 1560 Score = 51.3 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 23/205 (11%) Query 1603 DVTKIKPHNSHEGKTFYVLPNDDT-LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQV 1661 D+ K++ E +T P D T V AF+ + L + + + +K Sbjct 1054 DIEKVEDSILSELQTELNAPADKTYEDVLAFDAIY---SETLSAFYAVPSDETHFKVC-- 1108 Query 1662 NGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKT 1721 G S NC+L + L+ +Q + L+F +Q + +AG F ++ K+ Sbjct 1109 -GFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKS 1167 Query 1722 VGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQF 1779 + G V + + S K N C CG + L+G++AV + G + Sbjct 1168 IILPQGGYVADFAYFFLSQ---CSFKVHANWRCLKCGM-ELKLQGLDAVFFYGDV----- 1218 Query 1780 KKGVQIPCTCGKQATKYLVQQESPF 1804 V C CG T L+ + P+ Sbjct 1219 ---VSHMCKCGNSMT--LLSADIPY 1238 >sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1 Length=4383 Score = 3546 bits (9194), Expect = 0.0, Method: Composition-based stats. Identities = 1070/2922 (37%), Positives = 1628/2922 (56%), Gaps = 117/2922 (4%) Query 1531 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 1588 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 1648 +G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 NFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 1708 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 1709 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 1768 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 1769 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1828 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1829 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1887 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1946 E P L YY Y+T++ I + + NFK + I D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTI--CDILNAKLG 1939 Query 1947 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 2003 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 2004 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 2063 ++ + N FDVLK +D +++ D K E+ I L Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAK-------ESKEINIIKLS 2042 Query 2064 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 2122 K +V +I+ + +K + + D+ ++ ++ N+LS + + T+ Sbjct 2043 GVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANDLSMAVNVPTIR 2102 Query 2123 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 2179 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFGW 2155 Query 2180 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 2237 + + K T +A + + +F K ++ II I+ L + Sbjct 2156 IKIS----ADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFN 2211 Query 2238 VCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 ++I+S L + S + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 2342 GLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 +Q+ ++ F+ ++ W + L+++L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRH 2387 Query 2400 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 2459 V GC+ C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYK 2447 Query 2460 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 2519 G+TFI+ E A DLS + KRPI PTD + + V V + L++++ GQ+TY+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNAS 2507 Query 2520 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 2579 FV+ NL + KG ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLITT 2565 Query 2580 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 2639 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARK 2625 Query 2640 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKH 2685 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 + VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPF 2745 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTR 2818 +LKGG + + ++ ++LV + + P + + K YK +D GV R Sbjct 2746 SLKGGAVFSYFVYVCFLLSLVCFI---GLWCLMPTYTVHKSDFQLPVYTSYKVLDNGVIR 2802 Query 2819 DIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 D++ D CFANK FD W+ G Y+N ACP++ AV+ +++G V +P +LR Sbjct 2803 DVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDLGSTVFNVPTKVLRY 2862 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 LHF+ SA G CYTP I Y++F S CVL++ CT+F A G P PYCY Sbjct 2863 -GYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTE 2921 Query 2937 NVLEGSVAYESLRPDTRYVLMDG-SIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAG 2995 +++ + Y SL P RY L + I+FP EG VR+V T YCR G CE ++ G Sbjct 2922 GLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMSYCRVGLCEEADEG 2981 Query 2996 VCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAI 3055 +C + +G WVLNNDYYRSLPG FCG D +L+ +F L QP+ L ++AS +AG I+A+ Sbjct 2982 ICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAV 3041 Query 3056 VVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFY 3115 +V + YY ++ +RAFG+Y+ +V N +++ ++F +L + VY L VY++ Y Y T Y Sbjct 3042 IVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLY 3101 Query 3116 LTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTF 3175 +++S + H+QW+VM+ ++P W + YI + + H +W F+ RR+ + S TF Sbjct 3102 FPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFA--YCRRLGTSVRSDGTF 3159 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 EE AL TF++ K+ Y KL++ L +NRYL+LYNKY+Y+SG MDT +YREAAC LA Sbjct 3160 EEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLA 3217 Query 3236 KALNDF-SNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 KA++ F +N+GSDVLYQPP S++++ LQSG KM P+ KVE C+V VT G TLNGLW Sbjct 3218 KAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLW 3277 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 LDD VYCPRHVIC++ DM NP+Y +LL R ++ +F V + L V+ + MQ C+L L V Sbjct 3278 LDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTV 3337 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 N +TPKY F ++PG+TF+VLA YNG P G + MR ++TIKGSFL GSCGSVG+ Sbjct 3338 TLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYV 3397 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 + DCV F YMH +EL TG H GTD G+FYGP+ D Q Q D +VN +AWLYAA Sbjct 3398 LMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAA 3457 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 ++N WF+ ++ DFN+ A+ + + D V + L++ TG+++ + A++K L Sbjct 3458 ILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV--IDALASMTGVSLETLLAAIKRL 3515 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 +NG GR I+GS EDE TP DV +Q +G+ QS R +KG W++ + ++ Sbjct 3516 -KNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCII 3574 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-MV 3653 +W++F ++ N L + + + AM+ VKHKH +L ++++P L T+ Y N +V Sbjct 3575 TAFVKWTMFMYVTTN-MLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLV 3633 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVL-LILMTARTVYDDGARRVWTLM 3712 ++ + WL S+ + D V+Y +++ ++ +T R++ D + + Sbjct 3634 VYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVG 3692 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 V+++V Y G+ L++ I + ++ S+ Y+ M A+ ++ V ++F Sbjct 3693 RVISVVSLWYMGSNLEEEILL--MLASLFGTYTWTTALSMAAAK-VIAKWVAVNVLYFTD 3749 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++ +++ Y F+GY +CY+GLF L+N FR+ LGVY+Y +S QE RYMN+ GL PPK Sbjct 3750 IPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPK 3809 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS +A LN KLLG+GG P I+V+ QSK++DVKC +VVLL+ LQ L V S+SKLW C Sbjct 3810 NSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCS 3869 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIAS 3946 LHN+IL D AFEK+ LL VL + AVD I ++C++ + LQA+ S Sbjct 3870 TLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQS 3929 Query 3947 EFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMA 4005 EF ++ S+ + A++ ++A ++G + + LK+L+K+ N+AKS ++RD A+ RKLE+MA Sbjct 3930 EFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMA 3989 Query 4006 DQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLT 4065 D A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP Sbjct 3990 DLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSL 4049 Query 4066 TAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWP 4125 A L +++PD + Y D TYA +W+IQ + D+D QL+EIS D + WP Sbjct 4050 AANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCN----WP 4105 Query 4126 LIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLA 4183 L++ A R N SA LQNNEL P L+ +G QT T YYN + G+ V A Sbjct 4106 LVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYA 4163 Query 4184 LLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4243 +LSD+ LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+ Sbjct 4164 ILSDVDGLKYTKILKDDGN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVV 4222 Query 4244 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTG 4303 G++++TVRLQAG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H G Sbjct 4223 GTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAG 4282 Query 4304 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4363 TG AITV P+A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4283 TGMAITVKPDATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSY 4341 Query 4364 TLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 L + VC VCG W+ CSC + +QS D +FLNGF V Sbjct 4342 VLTHDVCQVCGFWRDGSCSCVST-DTTVQSKDT-NFLNGFGV 4381 Score = 612 bits (1578), Expect = 5e-174, Method: Composition-based stats. Identities = 221/1075 (21%), Positives = 387/1075 (36%), Gaps = 175/1075 (16%) Query 43 RQHLKDGTCGLVEVE----------KGVLPQLEQPYVFIKRSDA---RTAPHGHVMVEL- 88 + L+ LV +G P +F +RS R A + HV +L Sbjct 94 QDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLY 153 Query 89 VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKNGNKGA-------GGHS 135 + + G+ +G +G+ +G ++P + +PV RK + LRK G KGA GG Sbjct 154 MIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFE 211 Query 136 YGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 + + K D D + +P F L+R G YVD C G Sbjct 212 HVYNFKVEDAYDLVHDEPKGKFS---------KKAYALIRGYRGVKPLLYVDQYGCDYTG 262 Query 196 YP---LECIKDLLARAGKASCTL-SEQLDFIDTKRGVYCCREHEHEIAWYTERSEK-SYE 250 LE D + KA + S++L F + +AW+ R + Sbjct 263 GLADGLEAYADKTLQEMKALFPIWSQELPF-------------DVTVAWHVVRDPRYVMR 309 Query 251 LQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFM---- 297 LQ+ I+ D +G P V+ +SII + + L M Sbjct 310 LQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSII------LRQHNLVDIMSCFY 363 Query 298 ----GRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCEF-CGTENLT 350 + + Y V +C + + C D C W G+ + CG T Sbjct 364 MEADAVVNAFYGV-DLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYET 422 Query 351 KEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGC 409 + + G LP N V+ A + G + S Y G + FGGC Sbjct 423 GDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVVYFGGC 469 Query 410 VFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEGSEGLNDNL-LEILQKEKVNINIV 464 V+ + N W+P +++ G +TGVVG + NL + L + V + Sbjct 470 VY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQ-HKC 524 Query 465 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNI- 523 G+ E + + S L+ +K ++E+ F + + K + + Sbjct 525 GNLHQRELLGV---------SDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVC 575 Query 524 --GEQKSILSPLY-----------AFASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 570 G +L L AF A ++ ++ S++ E S+ L AAI L Sbjct 576 ADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAVVSKSKELLDVSLDSLS-AAIHYL 634 Query 571 DGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDW 630 + +++D SD T+ +V + T+ L VL Sbjct 635 NS------KIVDLAQHFSDFGTS-------FVSKIVHFFKTFTTSTALAFAWVLFHVLHG 681 Query 631 LEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCA 690 + + F+++ I ++ S V + AK + +S++ F + Sbjct 682 AYIVVESDIYFVKN---IPRYAS-----AVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGR 733 Query 691 DSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMP---LKAPKEIIFLEGETL 747 I + G+K+ + G + HS L + L MP KA ++ I+L+G Sbjct 734 RRICLSGSKIYEVERG---LLHSSQL------PLDVYDLTMPSQVQKAKQKPIYLKGSGS 784 Query 748 PTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMM 807 + V + T L P E P V +CI + + + Y + + Sbjct 785 DFSLADSVVEVVTTSLTPC-----GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHV 839 Query 808 VTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELG 865 + A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ Sbjct 840 GLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDT 899 Query 866 TEVNEFACVVADAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYC 922 ++ EF VV DA+ + L P EL + L + + +LFDE+GE LAS +YC Sbjct 900 VDMEEFYAVVVDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYC 959 Query 923 SFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDD 982 +F P++D+ + EE + + T + ++ E+ ++ + Sbjct 960 AFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 1019 Query 983 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 1037 S V + D I + + T + ++V +N Sbjct 1020 TSDSQVEEDVEMSDF-ADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNN 1073 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 110/251 (44%), Gaps = 17/251 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + T V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 1264 HPDSATLVSDI 1274 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 1717 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 N V + G V + + L + V C C LKG++A+ + G + Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYGDV 1172 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1834 V C CG+ L+ + PF A + LK F Y+ Sbjct 1173 --------VSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1835 HYKHITSKETLYCIDG 1850 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1 Length=4383 Score = 3546 bits (9194), Expect = 0.0, Method: Composition-based stats. Identities = 1070/2922 (37%), Positives = 1629/2922 (56%), Gaps = 117/2922 (4%) Query 1531 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 1588 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 1648 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 1708 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 1709 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 1768 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 1769 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1828 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1829 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1887 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1946 E +P L YY Y+T++ I + + NFK + I D LN G Sbjct 1882 KKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTI--CDILNAKLG 1939 Query 1947 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 2003 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 2004 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 2063 ++ + N FDVLK +D +++ D K E+ I L Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAK-------ESKEINIIKLS 2042 Query 2064 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 2122 K +V +I+ + +K + + D+ ++ ++ N LS + + T+ Sbjct 2043 GVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIR 2102 Query 2123 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 2179 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFGW 2155 Query 2180 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 2237 + + K T +A + + +F K ++ II I+ L + Sbjct 2156 IKIS----ADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFN 2211 Query 2238 VCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 ++I+S L + S + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 2342 GLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 +Q+ ++ F+ ++ W + L+++L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRH 2387 Query 2400 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 2459 V GC+ C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYK 2447 Query 2460 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 2519 G+TFI+ E A DLS + KRPI PTD + + V V + L++++ GQ+TY+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNAS 2507 Query 2520 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 2579 FV+ NL + KG ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLITT 2565 Query 2580 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 2639 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARK 2625 Query 2640 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKH 2685 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 + VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPF 2745 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTR 2818 +LKGG + + ++ ++LV + + P + + K YK +D GV R Sbjct 2746 SLKGGAVFSYFVYVCFLLSLVCFI---GLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIR 2802 Query 2819 DIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 D++ D CFANK FD W+ G Y+N ACP++ AV+ +++G V +P +LR Sbjct 2803 DVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDLGSTVFNVPTKVLRY 2862 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 LHF+ SA G CYTP I Y++F S CVL++ CT+F A G P PYCY Sbjct 2863 -GYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTE 2921 Query 2937 NVLEGSVAYESLRPDTRYVLMDG-SIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAG 2995 +++ + Y SL P RY L + I+FP EG VR+V T YCR G CE ++ G Sbjct 2922 GLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMSYCRVGLCEEADEG 2981 Query 2996 VCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAI 3055 +C + +G WVLNNDYYRSLPG FCG D +L+ +F L QP+ L ++AS +AG I+A+ Sbjct 2982 ICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAV 3041 Query 3056 VVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFY 3115 +V + YY ++ +RAFG+Y+ +V N +++ ++F +L + VY L VY++ Y Y T Y Sbjct 3042 IVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLY 3101 Query 3116 LTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTF 3175 +++S + H+QW+VM+ ++P W + YI + + H +W F+ RR+ + S TF Sbjct 3102 FPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFA--YCRRLGTSVRSDGTF 3159 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 EE AL TF++ K+ Y KL++ L +NRYL+LYNKY+Y+SG MDT +YREAAC LA Sbjct 3160 EEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLA 3217 Query 3236 KALNDF-SNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 KA++ F +N+GSDVLYQPP S++++ LQSG KM P+ KVE C+V VT G TLNGLW Sbjct 3218 KAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLW 3277 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 LDD VYCPRHVIC++ DM NP+Y +LL R ++ +F V + L V+ + MQ C+L L V Sbjct 3278 LDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTV 3337 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 N +TPKY F ++PG+TF+VLA YNG P G + MR ++TIKGSFL GSCGSVG+ Sbjct 3338 TLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYV 3397 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 + DCV F YMH +EL TG H GTD G+FYGP+ D Q Q D +VN +AWLYAA Sbjct 3398 LMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAA 3457 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 ++N WF+ ++ DFN+ A+ + + D V + L++ TG+++ + A++K L Sbjct 3458 ILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV--IDALASMTGVSLETLLAAIKRL 3515 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 +NG GR I+GS EDE TP DV +Q +G+ QS R +KG W++ + ++ Sbjct 3516 -KNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCII 3574 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-MV 3653 +W++F ++ N L + + + AM+ VKHKH +L ++++P L T+ Y N +V Sbjct 3575 TAFVKWTMFMYVTTN-MLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLV 3633 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVL-LILMTARTVYDDGARRVWTLM 3712 ++ + WL S+ + D V+Y +++ ++ +T R++ D + + Sbjct 3634 VYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVG 3692 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 V+++V Y G+ L++ I + ++ S+ Y+ M A+ ++ V ++F Sbjct 3693 RVISVVSLWYMGSNLEEEILL--MLASLFGTYTWTTALSMAAAK-VIAKWVAVNVLYFTD 3749 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++ +++ Y F+GY +CY+GLF L+N FR+ LGVY+Y +S QE RYMN+ GL PPK Sbjct 3750 IPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPK 3809 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS +A LN KLLG+GG P I+V+ QSK++DVKC +VVLL+ LQ L V S+SKLW C Sbjct 3810 NSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCS 3869 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIAS 3946 LHN+IL D AFEK+ LL VL + AVD I ++C++ + LQA+ S Sbjct 3870 TLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQS 3929 Query 3947 EFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMA 4005 EF ++ S+ + A++ ++A ++G + + LK+L+K+ N+AKS ++RD A+ RKLE+MA Sbjct 3930 EFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMA 3989 Query 4006 DQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLT 4065 D A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP Sbjct 3990 DLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSL 4049 Query 4066 TAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWP 4125 A L +++PD + Y D TYA +W+IQ + D+D QL+EIS D + WP Sbjct 4050 AANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCN----WP 4105 Query 4126 LIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLA 4183 L++ A R N SA LQNNEL P L+ +G QT T YYN + G+ V A Sbjct 4106 LVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYA 4163 Query 4184 LLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4243 +LSD+ LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+ Sbjct 4164 ILSDVDGLKYTKILKDDGN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVV 4222 Query 4244 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTG 4303 G++++TVRLQAG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H G Sbjct 4223 GTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAG 4282 Query 4304 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4363 TG AITV P+A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4283 TGMAITVKPDATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSY 4341 Query 4364 TLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 L + VC VCG W+ CSC + +QS D +FLNGF V Sbjct 4342 VLTHDVCQVCGFWRDGSCSCVST-DTTVQSKDT-NFLNGFGV 4381 Score = 612 bits (1578), Expect = 4e-174, Method: Composition-based stats. Identities = 221/1075 (21%), Positives = 387/1075 (36%), Gaps = 175/1075 (16%) Query 43 RQHLKDGTCGLVEVE----------KGVLPQLEQPYVFIKRSDA---RTAPHGHVMVEL- 88 + L+ LV +G P +F +RS R A + HV +L Sbjct 94 QDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLY 153 Query 89 VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKNGNKGA-------GGHS 135 + + G+ +G +G+ +G ++P + +PV RK + LRK G KGA GG Sbjct 154 MIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFE 211 Query 136 YGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 + + K D D + +P F L+R G YVD C G Sbjct 212 HVYNFKVEDAYDLVHDEPKGKFS---------KKAYALIRGYRGVKPLLYVDQYGCDYTG 262 Query 196 YP---LECIKDLLARAGKASCTL-SEQLDFIDTKRGVYCCREHEHEIAWYTERSEK-SYE 250 LE D + KA + S++L F + +AW+ R + Sbjct 263 GLADGLEAYADKTLQEMKALFPIWSQELPF-------------DVTVAWHVVRDPRYVMR 309 Query 251 LQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFM---- 297 LQ+ I+ D +G P V+ +SII + + L M Sbjct 310 LQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSII------LRQHNLVDIMSCFY 363 Query 298 ----GRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCEF-CGTENLT 350 + + Y V +C + + C D C W G+ + CG T Sbjct 364 MEADAVVNAFYGV-DLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYET 422 Query 351 KEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGC 409 + + G LP N V+ A + G + S Y G + FGGC Sbjct 423 GDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVVYFGGC 469 Query 410 VFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEGSEGLNDNL-LEILQKEKVNINIV 464 V+ + N W+P +++ G +TGVVG + NL + L + V + Sbjct 470 VY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQ-HKC 524 Query 465 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNI- 523 G+ E + + S L+ +K ++E+ F + + K + + Sbjct 525 GNLHQRELLGV---------SDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVC 575 Query 524 --GEQKSILSPLY-----------AFASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 570 G +L L AF A ++ ++ S++ E S+ L AAI L Sbjct 576 ADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAVVSKSKELLDVSLDSLS-AAIHYL 634 Query 571 DGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDW 630 + +++D SD T+ +V + T+ L VL Sbjct 635 NS------KIVDLAQHFSDFGTS-------FVSKIVHFFKTFTTSTALAFAWVLFHVLHG 681 Query 631 LEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCA 690 + + F+++ I ++ S V + AK + +S++ F + Sbjct 682 AYIVVESDIYFVKN---IPRYAS-----AVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGR 733 Query 691 DSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMP---LKAPKEIIFLEGETL 747 I + G+K+ + G + HS L + L MP KA ++ I+L+G Sbjct 734 RRICLSGSKIYEVERG---LLHSSQL------PLDVYDLTMPSQVQKAKQKPIYLKGSGS 784 Query 748 PTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMM 807 + V + T L P E P V +CI + + + Y + + Sbjct 785 DFSLADSVVEVVTTSLTPC-----GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHV 839 Query 808 VTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELG 865 + A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ Sbjct 840 GLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDT 899 Query 866 TEVNEFACVVADAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYC 922 ++ EF VV DA+ + L P EL + L + + +LFDE+GE LAS +YC Sbjct 900 VDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYC 959 Query 923 SFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDD 982 +F P++D+ + EE + + T + ++ E+ ++ + Sbjct 960 AFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 1019 Query 983 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 1037 S V + D I + + T + ++V +N Sbjct 1020 TSDSQVEEDVEMSDF-ADLESVIQDYENVCFEFYTTEPEFVKVLDLYVPKATRNN 1073 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 110/251 (44%), Gaps = 17/251 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + T V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 1264 HPDSATLVSDI 1274 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 1717 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 N V + G V + + L + V C C LKG++A+ + G + Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYGDV 1172 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1834 V C CG+ L+ + PF A + LK F Y+ Sbjct 1173 --------VSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1835 HYKHITSKETLYCIDG 1850 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 3541 bits (9182), Expect = 0.0, Method: Composition-based stats. Identities = 1067/2918 (37%), Positives = 1625/2918 (56%), Gaps = 117/2918 (4%) Query 1531 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 1588 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 1648 +G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 NFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 1708 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 1709 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 1768 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 1769 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1828 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1829 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1887 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1946 E P L YY Y+T++ I + + NFK + I D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTI--CDILNAKLG 1939 Query 1947 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 2003 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 2004 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 2063 ++ + N FDVLK +D +++ D K E+ I L Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAK-------ESKEINIIKLS 2042 Query 2064 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 2122 K +V +I+ + +K + + D+ ++ ++ N+LS + + T+ Sbjct 2043 GVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANDLSMAVNVPTIR 2102 Query 2123 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 2179 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFGW 2155 Query 2180 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 2237 + + K T +A + + +F K ++ II I+ L + Sbjct 2156 IKIS----ADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFN 2211 Query 2238 VCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 ++I+S L + S + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 2342 GLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 +Q+ ++ F+ ++ W + L+++L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRH 2387 Query 2400 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 2459 V GC+ C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYK 2447 Query 2460 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 2519 G+TFI+ E A DLS + KRPI PTD + + V V + L++++ GQ+TY+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNAS 2507 Query 2520 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 2579 FV+ NL + KG ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLITT 2565 Query 2580 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 2639 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARK 2625 Query 2640 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKH 2685 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 + VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPF 2745 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTR 2818 +LKGG + + ++ ++LV + + P + + K YK +D GV R Sbjct 2746 SLKGGAVFSYFVYVCFLLSLVCFI---GLWCLMPTYTVHKSDFQLPVYTSYKVLDNGVIR 2802 Query 2819 DIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 D++ D CFANK FD W+ G Y+N ACP++ AV+ +++G V +P +LR Sbjct 2803 DVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDLGSTVFNVPTKVLRY 2862 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 LHF+ SA G CYTP I Y++F S CVL++ CT+F A G P PYCY Sbjct 2863 -GYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTE 2921 Query 2937 NVLEGSVAYESLRPDTRYVLMDG-SIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAG 2995 +++ + Y SL P RY L + I+FP EG VR+V T YCR G CE ++ G Sbjct 2922 GLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMSYCRVGLCEEADEG 2981 Query 2996 VCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAI 3055 +C + +G WVLNNDYYRSLPG FCG D +L+ +F L QP+ L ++AS +AG I+A+ Sbjct 2982 ICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAV 3041 Query 3056 VVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFY 3115 +V + YY ++ +RAFG+Y+ +V N +++ ++F +L + VY L VY++ Y Y T Y Sbjct 3042 IVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLY 3101 Query 3116 LTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTF 3175 +++S + H+QW+VM+ ++P W + YI + + H +W F+ RR+ + S TF Sbjct 3102 FPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFA--YCRRLGTSVRSDGTF 3159 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 EE AL TF++ K+ Y KL++ L +NRYL+LYNKY+Y+SG MDT +YREAAC LA Sbjct 3160 EEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLA 3217 Query 3236 KALNDF-SNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 KA++ F +N+GSDVLYQPP S++++ LQSG KM P+ KVE C+V VT G TLNGLW Sbjct 3218 KAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLW 3277 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 LDD VYCPRHVIC++ DM NP+Y +LL R ++ +F V + L V+ + MQ C+L L V Sbjct 3278 LDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTV 3337 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 N +TPKY F ++PG+TF+VLA YNG P G + MR ++TIKGSFL GSCGSVG+ Sbjct 3338 TLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYV 3397 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 + DCV F YMH +EL TG H GTD G+FYGP+ D Q Q D +VN +AWLYAA Sbjct 3398 LMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAA 3457 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 ++N WF+ ++ DFN+ A+ + + D V + L++ TG+++ + A++K L Sbjct 3458 ILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV--IDALASMTGVSLETLLAAIKRL 3515 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 +NG GR I+GS EDE TP DV +Q +G+ QS R +KG W++ + ++ Sbjct 3516 -KNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCII 3574 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-MV 3653 +W++F ++ N L + + + AM+ VKHKH +L ++++P L T+ Y N +V Sbjct 3575 TAFVKWTMFMYVTTN-MLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLV 3633 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVL-LILMTARTVYDDGARRVWTLM 3712 ++ + WL S+ + D V+Y +++ ++ +T R++ D + + Sbjct 3634 VYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVG 3692 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 V+++V Y G+ L++ I + ++ S+ Y+ M A+ ++ V ++F Sbjct 3693 RVISVVSLWYMGSNLEEEILL--MLASLFGTYTWTTALSMAAAK-VIAKWVAVNVLYFTD 3749 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++ +++ Y F+GY +CY+GLF L+N FR+ LGVY+Y +S QE RYMN+ GL PPK Sbjct 3750 IPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPK 3809 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS +A LN KLLG+GG P I+V+ QSK++DVKC +VVLL+ LQ L V S+SKLW C Sbjct 3810 NSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCS 3869 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIAS 3946 LHN+IL D AFEK+ LL VL + AVD I ++C++ + LQA+ S Sbjct 3870 TLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQS 3929 Query 3947 EFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMA 4005 EF ++ S+ + A++ ++A ++G + + LK+L+K+ N+AKS ++RD A+ RKLE+MA Sbjct 3930 EFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMA 3989 Query 4006 DQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLT 4065 D A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP Sbjct 3990 DLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSL 4049 Query 4066 TAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWP 4125 A L +++PD + Y D TYA +W+IQ + D+D QL+EIS D + WP Sbjct 4050 AANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCN----WP 4105 Query 4126 LIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLA 4183 L++ A R N SA LQNNEL P L+ +G QT T YYN + G+ V A Sbjct 4106 LVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYA 4163 Query 4184 LLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4243 +LSD+ LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+ Sbjct 4164 ILSDVDGLKYTKILKDDGN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVV 4222 Query 4244 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTG 4303 G++++TVRLQAG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H G Sbjct 4223 GTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAG 4282 Query 4304 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4363 TG AITV P+A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4283 TGMAITVKPDATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSY 4341 Query 4364 TLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 L + VC VCG W+ CSC + +QS D +FLN Sbjct 4342 VLTHDVCQVCGFWRDGSCSCVST-DTTVQSKDT-NFLN 4377 Score = 613 bits (1580), Expect = 4e-174, Method: Composition-based stats. Identities = 226/1061 (21%), Positives = 385/1061 (36%), Gaps = 176/1061 (17%) Query 43 RQHLKDGTCGLVEVE----------KGVLPQLEQPYVFIKRSDA---RTAPHGHVMVEL- 88 + L+ LV +G P +F +RS R A + HV +L Sbjct 94 QDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLY 153 Query 89 VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKNGNKGA-------GGHS 135 + + G+ +G +G+ +G ++P + +PV RK + LRK G KGA GG Sbjct 154 MIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFE 211 Query 136 YGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 + + K D D + +P F L+R G YVD C G Sbjct 212 HVYNFKVEDAYDLVHDEPKGKFS---------KKAYALIRGYRGVKPLLYVDQYGCDYTG 262 Query 196 YP---LECIKDLLARAGKASCTL-SEQLDFIDTKRGVYCCREHEHEIAWYTERSEK-SYE 250 LE D + KA + S++L F + +AW+ R + Sbjct 263 GLADGLEAYADKTLQEMKALFPIWSQELPF-------------DVTVAWHVVRDPRYVMR 309 Query 251 LQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFM---- 297 LQ+ I+ D +G P V+ +SII + + L M Sbjct 310 LQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSII------LRQHNLVDIMSCFY 363 Query 298 ----GRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCEF-CGTENLT 350 + + Y V +C + + C D C W G+ + CG T Sbjct 364 MEADAVVNAFYGV-DLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYET 422 Query 351 KEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGC 409 + + G LP N V+ A + G + S Y G + FGGC Sbjct 423 GDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVVYFGGC 469 Query 410 VFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEGSEGLNDNL-LEILQKEKVNINIV 464 V+ + N W+P +++ G +TGVVG + NL + L + V + Sbjct 470 VY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQ-HKC 524 Query 465 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNI- 523 G+ E + + S L+ +K ++E+ F + + K + + Sbjct 525 GNLHQRELLGV---------SDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVC 575 Query 524 --GEQKSILSPLY-----------AFASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 570 G +L L AF A ++ ++ S++ E S+ L AAI L Sbjct 576 ADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAVVSKSKELLDVSLDSLS-AAIHYL 634 Query 571 DGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDW 630 + +++D SD T+ +V + T+ L VL Sbjct 635 NS------KIVDLAQHFSDFGTS-------FVSKIVHFFKTFTTSTALAFAWVLFHVLHG 681 Query 631 LEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCA 690 + + F+++ I ++ S V + AK + +S++ F + Sbjct 682 AYIVVESDIYFVKN---IPRYAS-----AVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGR 733 Query 691 DSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMP---LKAPKEIIFLEGETL 747 I + G+K+ + G + HS L + L MP KA ++ I+L+G Sbjct 734 RRICLSGSKIYEVERG---LLHSSQL------PLDVYDLTMPSQVQKAKQKPIYLKGSGS 784 Query 748 PTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMM 807 + V + T L P E P V +CI + + + Y + + Sbjct 785 DFSLADSVVEVVTTSLTPC-----GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHV 839 Query 808 VTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELG 865 + A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ Sbjct 840 GLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDT 899 Query 866 TEVNEFACVVADAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYC 922 ++ EF VV DA+ + L P EL + L + + +LFDE+GE LAS +YC Sbjct 900 VDMEEFYAVVVDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYC 959 Query 923 SFYPPDEDE--EEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL 980 +F P++D+ EE EE++ E T E +S L+ + Sbjct 960 AFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 1019 Query 981 DDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 1021 DSQ + + + IQ V + V+ Sbjct 1020 TSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPEFVK 1060 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 110/251 (44%), Gaps = 17/251 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + T V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 1264 HPDSATLVSDI 1274 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 1717 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 N V + G V + + L + V C C LKG++A+ + G + Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYGDV 1172 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1834 V C CG+ L+ + PF A + LK F Y+ Sbjct 1173 --------VSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1835 HYKHITSKETLYCIDG 1850 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 3541 bits (9181), Expect = 0.0, Method: Composition-based stats. Identities = 1067/2918 (37%), Positives = 1626/2918 (56%), Gaps = 117/2918 (4%) Query 1531 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 1588 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 1648 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 1708 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 1709 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 1768 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 1769 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1828 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1829 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1887 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1946 E +P L YY Y+T++ I + + NFK + I D LN G Sbjct 1882 KKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTI--CDILNAKLG 1939 Query 1947 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 2003 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 2004 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 2063 ++ + N FDVLK +D +++ D K E+ I L Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAK-------ESKEINIIKLS 2042 Query 2064 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 2122 K +V +I+ + +K + + D+ ++ ++ N LS + + T+ Sbjct 2043 GVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRYVVRTANALSMAVNVPTIR 2102 Query 2123 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 2179 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFGW 2155 Query 2180 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 2237 + + K T +A + + +F K ++ II I+ L + Sbjct 2156 IKIS----ADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFN 2211 Query 2238 VCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 ++I+S L + S + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 2342 GLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 +Q+ ++ F+ ++ W + L+++L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFILFRH 2387 Query 2400 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 2459 V GC+ C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYK 2447 Query 2460 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 2519 G+TFI+ E A DLS + KRPI PTD + + V V + L++++ GQ+TY+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYERDGQRTYDDVNAS 2507 Query 2520 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 2579 FV+ NL + KG ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLITT 2565 Query 2580 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 2639 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARK 2625 Query 2640 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKH 2685 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 + VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPF 2745 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTR 2818 +LKGG + + ++ ++LV + + P + + K YK +D GV R Sbjct 2746 SLKGGAVFSYFVYVCFLLSLVCFI---GLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIR 2802 Query 2819 DIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 D++ D CFANK FD W+ G Y+N ACP++ AV+ +++G V +P +LR Sbjct 2803 DVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDLGSTVFNVPTKVLRY 2862 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 LHF+ SA G CYTP I Y++F S CVL++ CT+F A G P PYCY Sbjct 2863 -GYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTE 2921 Query 2937 NVLEGSVAYESLRPDTRYVLMDG-SIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAG 2995 +++ + Y SL P RY L + I+FP EG VR+V T YCR G CE ++ G Sbjct 2922 GLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMSYCRVGLCEEADEG 2981 Query 2996 VCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAI 3055 +C + +G WVLNNDYYRSLPG FCG D +L+ +F L QP+ L ++AS +AG I+A+ Sbjct 2982 ICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAV 3041 Query 3056 VVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFY 3115 +V + YY ++ +RAFG+Y+ +V N +++ ++F +L + VY L VY++ Y Y T Y Sbjct 3042 IVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLY 3101 Query 3116 LTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTF 3175 +++S + H+QW+VM+ ++P W + YI + + H +W F+ RR+ + S TF Sbjct 3102 FPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFA--YCRRLGTSVRSDGTF 3159 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 EE AL TF++ K+ Y KL++ L +NRYL+LYNKY+Y+SG MDT +YREAAC LA Sbjct 3160 EEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLA 3217 Query 3236 KALNDF-SNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 KA++ F +N+GSDVLYQPP S++++ LQSG KM P+ KVE C+V VT G TLNGLW Sbjct 3218 KAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLW 3277 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 LDD VYCPRHVIC++ DM NP+Y +LL R ++ +F V + L V+ + MQ C+L L V Sbjct 3278 LDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTV 3337 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 N +TPKY F ++PG+TF+VLA YNG P G + MR ++TIKGSFL GSCGSVG+ Sbjct 3338 TLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYV 3397 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 + DCV F YMH +EL TG H GTD G+FYGP+ D Q Q D +VN +AWLYAA Sbjct 3398 LMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAA 3457 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 ++N WF+ ++ DFN+ A+ + + D V + L++ TG+++ + A++K L Sbjct 3458 ILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV--IDALASMTGVSLETLLAAIKRL 3515 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 +NG GR I+GS EDE TP DV +Q +G+ QS R +KG W++ + ++ Sbjct 3516 -KNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCII 3574 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-MV 3653 +W++F ++ N L + + + AM+ VKHKH +L ++++P L T+ Y N +V Sbjct 3575 TAFVKWTMFMYVTTN-MLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLV 3633 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVL-LILMTARTVYDDGARRVWTLM 3712 ++ + WL S+ + D V+Y +++ ++ +T R++ D + + Sbjct 3634 VYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVG 3692 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 V+++V Y G+ L++ I + ++ S+ Y+ M A+ ++ V ++F Sbjct 3693 RVISVVSLWYMGSNLEEEILL--MLASLFGTYTWTTALSMAAAK-VIAKWVAVNVLYFTD 3749 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++ +++ Y F+GY +CY+GLF L+N FR+ LGVY+Y +S QE RYMN+ GL PPK Sbjct 3750 IPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPK 3809 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS +A LN KLLG+GG P I+V+ QSK++DVKC +VVLL+ LQ L V S+SKLW C Sbjct 3810 NSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCS 3869 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIAS 3946 LHN+IL D AFEK+ LL VL + AVD I ++C++ + LQA+ S Sbjct 3870 TLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQS 3929 Query 3947 EFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMA 4005 EF ++ S+ + A++ ++A ++G + + LK+L+K+ N+AKS ++RD A+ RKLE+MA Sbjct 3930 EFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMA 3989 Query 4006 DQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLT 4065 D A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP Sbjct 3990 DLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSL 4049 Query 4066 TAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWP 4125 A L +++PD + Y D TYA +W+IQ + D+D QL+EIS D + WP Sbjct 4050 AANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCN----WP 4105 Query 4126 LIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLA 4183 L++ A R N SA LQNNEL P L+ +G QT T YYN + G+ V A Sbjct 4106 LVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYA 4163 Query 4184 LLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4243 +LSD+ LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+ Sbjct 4164 ILSDVDGLKYTKILKDDGN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVV 4222 Query 4244 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTG 4303 G++++TVRLQAG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H G Sbjct 4223 GTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAG 4282 Query 4304 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4363 TG AITV P+A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4283 TGMAITVKPDATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSY 4341 Query 4364 TLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 L + VC VCG W+ CSC + +QS D +FLN Sbjct 4342 VLTHDVCQVCGFWRDGSCSCVST-DTTVQSKDT-NFLN 4377 Score = 613 bits (1580), Expect = 4e-174, Method: Composition-based stats. Identities = 226/1061 (21%), Positives = 385/1061 (36%), Gaps = 176/1061 (17%) Query 43 RQHLKDGTCGLVEVE----------KGVLPQLEQPYVFIKRSDA---RTAPHGHVMVEL- 88 + L+ LV +G P +F +RS R A + HV +L Sbjct 94 QDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLY 153 Query 89 VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKNGNKGA-------GGHS 135 + + G+ +G +G+ +G ++P + +PV RK + LRK G KGA GG Sbjct 154 MIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFE 211 Query 136 YGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 + + K D D + +P F L+R G YVD C G Sbjct 212 HVYNFKVEDAYDLVHDEPKGKFS---------KKAYALIRGYRGVKPLLYVDQYGCDYTG 262 Query 196 YP---LECIKDLLARAGKASCTL-SEQLDFIDTKRGVYCCREHEHEIAWYTERSEK-SYE 250 LE D + KA + S++L F + +AW+ R + Sbjct 263 GLADGLEAYADKTLQEMKALFPIWSQELPF-------------DVTVAWHVVRDPRYVMR 309 Query 251 LQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFM---- 297 LQ+ I+ D +G P V+ +SII + + L M Sbjct 310 LQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSII------LRQHNLVDIMSCFY 363 Query 298 ----GRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCEF-CGTENLT 350 + + Y V +C + + C D C W G+ + CG T Sbjct 364 MEADAVVNAFYGV-DLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYET 422 Query 351 KEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGC 409 + + G LP N V+ A + G + S Y G + FGGC Sbjct 423 GDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVVYFGGC 469 Query 410 VFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEGSEGLNDNL-LEILQKEKVNINIV 464 V+ + N W+P +++ G +TGVVG + NL + L + V + Sbjct 470 VY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQ-HKC 524 Query 465 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNI- 523 G+ E + + S L+ +K ++E+ F + + K + + Sbjct 525 GNLHQRELLGV---------SDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVC 575 Query 524 --GEQKSILSPLY-----------AFASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 570 G +L L AF A ++ ++ S++ E S+ L AAI L Sbjct 576 ADGFMPFLLDDLVPRAYYLAVSGQAFCDYADKICHAVVSKSKELLDVSLDSLS-AAIHYL 634 Query 571 DGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDW 630 + +++D SD T+ +V + T+ L VL Sbjct 635 NS------KIVDLAQHFSDFGTS-------FVSKIVHFFKTFTTSTALAFAWVLFHVLHG 681 Query 631 LEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCA 690 + + F+++ I ++ S V + AK + +S++ F + Sbjct 682 AYIVVESDIYFVKN---IPRYAS-----AVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGR 733 Query 691 DSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMP---LKAPKEIIFLEGETL 747 I + G+K+ + G + HS L + L MP KA ++ I+L+G Sbjct 734 RRICLSGSKIYEVERG---LLHSSQL------PLDVYDLTMPSQVQKAKQKPIYLKGSGS 784 Query 748 PTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMM 807 + V + T L P E P V +CI + + + Y + + Sbjct 785 DFSLADSVVEVVTTSLTPC-----GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHV 839 Query 808 VTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELG 865 + A +VTF + TV E+ K++ + +ELD+ + +LN C + V+ Sbjct 840 GLLDQAWRVPCAGRRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDT 899 Query 866 TEVNEFACVVADAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYC 922 ++ EF VV DA+ + L P EL + L + + +LFDE+GE LAS +YC Sbjct 900 VDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYC 959 Query 923 SFYPPDEDE--EEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL 980 +F P++D+ EE EE++ E T E +S L+ + Sbjct 960 AFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 1019 Query 981 DDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 1021 DSQ + + + IQ V + V+ Sbjct 1020 TSDSQVEEDVEMSDFADLESVIQDYENVCFEFYTTEPEFVK 1060 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 110/251 (44%), Gaps = 17/251 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + T V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 1264 HPDSATLVSDI 1274 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 1717 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 N V + G V + + L + V C C LKG++A+ + G + Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYGDV 1172 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1834 V C CG+ L+ + PF A + LK F Y+ Sbjct 1173 --------VSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1835 HYKHITSKETLYCIDG 1850 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus (strain Quebec) OX=11133 GN=1a PE=3 SV=1 Length=4383 Score = 3519 bits (9124), Expect = 0.0, Method: Composition-based stats. Identities = 1064/2922 (36%), Positives = 1619/2922 (55%), Gaps = 117/2922 (4%) Query 1531 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 1588 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 1648 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 1708 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 1709 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 1768 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 1769 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1828 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1829 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1887 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1946 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDILNAKLG 1939 Query 1947 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 2003 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 2004 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 2063 ++ + N FDVLK +D +++ D K E I L Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAK-------EPKEINIIKLS 2042 Query 2064 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 2122 K +V +I+ + +K + + D+ ++ ++ N LSR + + T+ Sbjct 2043 GVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTIR 2102 Query 2123 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 2179 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFGW 2155 Query 2180 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 2237 + + K T +A + + +F K ++ II I+ L + Sbjct 2156 IKIS----ADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFN 2211 Query 2238 VCLGSLIY--------------STAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 ++I+ + + + + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 2342 GLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 +Q+ ++ + ++ W + L+++L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELLMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRH 2387 Query 2400 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 2459 V GC+ S C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYK 2447 Query 2460 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 2519 G+TFI+ E A DLS + KRPI PTD + + V V + L++D+ GQ+TY+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNAS 2507 Query 2520 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 2579 FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKILITT 2565 Query 2580 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 2639 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARK 2625 Query 2640 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKH 2685 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 + VAK ++ IW+V F LS + +++ A K L +LT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLELTYNKQMANVSVLTTPF 2745 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTR 2818 +LKGG + + ++ ++LV + + P + + K YK +D GV R Sbjct 2746 SLKGGAVFSYFVYVCFVLSLVCFI---GLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIR 2802 Query 2819 DIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 D++ D CFANK FD W+ G Y+N ACP++ AV+ ++ G V +P +LR Sbjct 2803 DVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDFGSTVFNVPTKVLRY 2862 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 LHF+ SA G CYTP I Y++F S CVL++ CT+F A G P PYCY Sbjct 2863 -GYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTD 2921 Query 2937 NVLEGSVAYESLRPDTRYVLMDG-SIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAG 2995 +++ + Y SL P RY L + I+ P EG VR+V T YCR G CE ++ G Sbjct 2922 GLMQNASLYSSLVPHVRYNLANAKGFIRLPEVLREGLVRIVRTRSMSYCRVGLCEEADEG 2981 Query 2996 VCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAI 3055 +C + +G WVLNNDYYRSLPG FCG D +L+ +F L QP+ L ++AS +AG I+A+ Sbjct 2982 ICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAV 3041 Query 3056 VVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFY 3115 +V YY ++ +RAFG+Y+ +V N +++ ++F +L + VY L VY++ Y Y T Y Sbjct 3042 IVVLGFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLY 3101 Query 3116 LTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTF 3175 +++S + H+QW+VM+ ++P W + YI + + H +W FS R++ + S TF Sbjct 3102 FPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFS--YCRQLGTSVRSDGTF 3159 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 EE AL TF++ K+ Y KL++ L +NRYL+LYNKY+Y+SG MDT +YREAAC LA Sbjct 3160 EEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLA 3217 Query 3236 KALNDF-SNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 KA++ F +N+GSDVLYQPP S++++ LQSG KM P+ KVE C+V VT G TLNGLW Sbjct 3218 KAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLW 3277 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 LDD VYCPRHVIC++ DM NP+Y +LL R ++ +F V + L V+ + MQ C+L L V Sbjct 3278 LDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTV 3337 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 N +TPKY F ++PG+TF+VLA YNG P G + MR ++TIKGSFL GSCGSVG+ Sbjct 3338 TLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYV 3397 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 I DCV F YMH +EL TG H GTD G+FYGP+ D Q Q D +VN +AWLYAA Sbjct 3398 IMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAA 3457 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 ++N WF+ ++ DFN+ A+ + + D V + L++ TG+++ + A++K L Sbjct 3458 ILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV--IDALASMTGVSLETLLAAIKRL 3515 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 +NG GR I+GS EDE TP DV +Q +G+ QS R +KG W++ + ++ Sbjct 3516 -KNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCII 3574 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-MV 3653 +W++F ++ N L + + + AM+ VKHKH +L ++++P L T+ Y N +V Sbjct 3575 TAFVKWTMFMYVTTN-MLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLV 3633 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVL-LILMTARTVYDDGARRVWTLM 3712 ++ + WL S+ + D V+Y +++ ++ +T R++ D + + Sbjct 3634 VYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVG 3692 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 V+++V Y G+ L++ I + ++ S+ Y+ M A+ ++ V ++F Sbjct 3693 RVISVVSLWYMGSNLEEEILL--MLASLFGTYTWTTALSMAAAK-VIAKWVAVNVLYFTD 3749 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++ +++ Y F+GY +CY+GLF L+N FR+ LGVY+Y +S QE RYMN+ GL PPK Sbjct 3750 IPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPK 3809 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS +A LN KLLG+GG P I+V+ QSK++DVKC + LL+ LQ L V S+SKLW C Sbjct 3810 NSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANGGLLNCLQHLHVASNSKLWQYCS 3869 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIAS 3946 LHN+IL D AFEK+ LL VL + AVD I ++C++ + LQA+ S Sbjct 3870 TLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQS 3929 Query 3947 EFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMA 4005 EF ++ S+ + A++ ++A ++G + + LK+L+K+ N+AKS ++RD A+ RKLE+MA Sbjct 3930 EFVNMASFVEYEVAKKNLDEACSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMA 3989 Query 4006 DQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLT 4065 D A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP Sbjct 3990 DLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSL 4049 Query 4066 TAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWP 4125 A L +++PD + Y D TYA +W+IQ + D+D QL EIS D + WP Sbjct 4050 AANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLHEISDDCN----WP 4105 Query 4126 LIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLA 4183 L++ A R N SA LQNNEL P L+ +G QT T YYN + G+ V A Sbjct 4106 LVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSYNGKIVYA 4163 Query 4184 LLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4243 +LSD+ LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+ Sbjct 4164 ILSDVDGLKYTKILKDDGN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVV 4222 Query 4244 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTG 4303 G++++TVRLQAG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H G Sbjct 4223 GTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAG 4282 Query 4304 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4363 TG AITV P+A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4283 TGMAITVKPDATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSY 4341 Query 4364 TLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 L + VC VCG W+ CSC + +QS D +FLNGF V Sbjct 4342 VLTHDVCQVCGFWRDGSCSCVST-DTTVQSKDT-NFLNGFGV 4381 Score = 602 bits (1552), Expect = 4e-171, Method: Composition-based stats. Identities = 226/1061 (21%), Positives = 380/1061 (36%), Gaps = 176/1061 (17%) Query 43 RQHLKDGTCGLVEVE----------KGVLPQLEQPYVFIKRSDA---RTAPHGHVMVEL- 88 + L+ LV +G P +F +RS R A + HV +L Sbjct 94 QDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLY 153 Query 89 VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKNGNKGA-------GGHS 135 + + G+ +G +G+ +G ++P + +PV RK + LRK G KGA GG Sbjct 154 MIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIAPWVMYLRKCGEKGAYIKDYKRGGFE 211 Query 136 YGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 + + K D D + +P F L+R G YVD C G Sbjct 212 HVYNFKVEDAYDLVHDEPKGKFS---------KKAYALIRGYRGVKPLLYVDQYGCDYTG 262 Query 196 YP---LECIKDLLARAGKASCTL-SEQLDFIDTKRGVYCCREHEHEIAWYTERSEK-SYE 250 LE D + KA + S++L F + +AW+ R + Sbjct 263 GLADGLEAYADKTLQEMKALFPIWSQELPF-------------DVTVAWHVVRDPRYVMR 309 Query 251 LQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFM---- 297 LQ+ I+ D +G P V+ +SII + + L M Sbjct 310 LQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSII------LRQHNLVDIMSCFY 363 Query 298 ----GRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCEF-CGTENLT 350 + + Y V +C + + C D C W G+ + CG T Sbjct 364 MEADAVVNAFYGV-DLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYET 422 Query 351 KEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGC 409 + + G LP N V+ A + G + S Y G + FGGC Sbjct 423 GDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVVYFGGC 469 Query 410 VFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEGSEGLNDNL-LEILQKEKVNINIV 464 V+ + N W+P +++ G +TGVVG + NL + L + V + Sbjct 470 VY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQ-HKC 524 Query 465 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNI- 523 G+ E + + S L+ +K ++E+ F + + K + + Sbjct 525 GNLHQRELLGV---------SDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVC 575 Query 524 --GEQKSILSPLY-----------AFASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 570 G +L L AF A ++ ++ S++ E SV L AAI L Sbjct 576 ADGFMPFLLDDLVPRAYYLAVSGQAFCDYAGKICHAVVSKSKELLDVSVDSL-GAAIHYL 634 Query 571 DGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDW 630 + +++D SD T+ +V + T+ L VL Sbjct 635 NS------KIVDLAQHFSDFGTS-------FVSKIVHFFKTFTTSTALAFAWVLFHVLHG 681 Query 631 LEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCA 690 + + F ++ I ++ S V + AK +S++ F + Sbjct 682 AYIVVESDIYFGKN---IPRYAS-----AVAQAFRSGAKVGLDSLRVTFIDGLSCFKIGR 733 Query 691 DSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMP---LKAPKEIIFLEGETL 747 I + G+K+ + G + HS L + L MP K ++ I+L+G Sbjct 734 RRICLSGSKIYEVERG---LLHSSQL------PLDVYDLTMPSQVQKTKQKGIYLKGSGS 784 Query 748 PTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMM 807 + V + T L P E P V +CI + + + Y + + Sbjct 785 DFSLADSVVEVVTTSLTPC-----GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHV 839 Query 808 VTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELG 865 + A VTF + TV E+ K++ + +ELD+ + +LN C + V+ Sbjct 840 GLLDQAWRVPCAGRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDT 899 Query 866 TEVNEFACVVADAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYC 922 ++ EF VV DA+ + L P EL + L + + +LFDE+GE LA +YC Sbjct 900 VDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYC 959 Query 923 SFYPPDEDE--EEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL 980 +F P++D+ EE EE++ E T E +S L+ + Sbjct 960 AFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 1019 Query 981 DDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 1021 DSQ Q + + IQ V + V+ Sbjct 1020 TSDSQVEEDVQMSDFGDLESVIQDYENVCFEFYTTEPEFVK 1060 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 111/251 (44%), Gaps = 17/251 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + T + V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 1264 HPDSATLVSDI 1274 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 1717 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 N V + G V + + L + V C C LKG++A+ + G + Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYGDV 1172 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1834 V C CG+ L+ + PF A + LK F Y+ Sbjct 1173 --------VSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1835 HYKHITSKETLYCIDG 1850 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus (strain Mebus) OX=11132 GN=1a PE=3 SV=1 Length=4383 Score = 3516 bits (9118), Expect = 0.0, Method: Composition-based stats. Identities = 1066/2922 (36%), Positives = 1620/2922 (55%), Gaps = 117/2922 (4%) Query 1531 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 1588 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 1648 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 1708 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 1709 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 1768 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 1769 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1828 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1829 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1887 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1946 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDILNAKLG 1939 Query 1947 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 2003 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 2004 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 2063 ++ + N FDVLK +D +++ D K E I L Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAK-------EPKEINIIKLS 2042 Query 2064 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 2122 K +V +I+ + +K + + D+ ++ ++ N LSR + + T+ Sbjct 2043 GVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTIR 2102 Query 2123 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 2179 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFGW 2155 Query 2180 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 2237 + + K T +A + + +F K ++ II I+ L + Sbjct 2156 IKIS----ADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFN 2211 Query 2238 VCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 ++I+S L + + + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 2342 GLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 +Q+ ++ F+ ++ W + L+++L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRH 2387 Query 2400 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 2459 V GC+ S C+ CYKRNR+ RV+C+TIV G+ R + ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDAMANGGTGFCSKHQWNCIDCDSYK 2447 Query 2460 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 2519 G+TFI+ E A DLS + KRPI PTD + + V V + L++D+ GQ+TY+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNAS 2507 Query 2520 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 2579 FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLITT 2565 Query 2580 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 2639 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARK 2625 Query 2640 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKH 2685 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 + VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPF 2745 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTR 2818 +LKGG + + ++ ++LV + + P + + K YK +D GV R Sbjct 2746 SLKGGAVFSYFVYVCFVLSLVCFI---GLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIR 2802 Query 2819 DIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 D++ D CFANK FD W+ G Y+N ACP++ AV+ ++ G V +P +LR Sbjct 2803 DVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDFGSTVFNVPTKVLRY 2862 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 LHF+ SA G CYTP I Y++F S CVL++ CT+F A G P PYCY Sbjct 2863 -GYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTD 2921 Query 2937 NVLEGSVAYESLRPDTRYVLMDG-SIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAG 2995 +++ + Y SL P RY L + I+FP EG VR+V T YCR G CE ++ G Sbjct 2922 GLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMPYCRVGLCEEADEG 2981 Query 2996 VCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAI 3055 +C + +G WVLNNDYYRSLPG FCG D +L+ +F L QP+ L ++AS +AG I+A+ Sbjct 2982 ICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAV 3041 Query 3056 VVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFY 3115 +V + YY ++ +RAFG+Y+ +V N +++ ++F +L + VY L VY++ Y Y T Y Sbjct 3042 IVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLY 3101 Query 3116 LTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTF 3175 +++S + H+QW+VM+ ++P W + YI + + H +W FS R++ + S TF Sbjct 3102 FPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFS--YCRQLGTSVRSDGTF 3159 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 EE AL TF++ K+ Y KL++ L +NRYL+LYNKY+Y+SG MDT +YREAAC LA Sbjct 3160 EEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLA 3217 Query 3236 KALNDF-SNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 KA++ F +N+GSDVLYQPP S++++ LQSG KM P+ KVE C+V VT G TLNGLW Sbjct 3218 KAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLW 3277 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 L D VYCPRHVIC++ DM NP+Y +LL R ++ +F V + L V+ + MQ C+L L V Sbjct 3278 LGDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTV 3337 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 N +TPKY F ++PG+TF+VLA YNG P G + MR ++TIKGSFL GSCGSV + Sbjct 3338 TLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVVYV 3397 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 I DCV F YMH +EL TG H GTD G+FYGP+ D Q Q D +VN +AWLYAA Sbjct 3398 IMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAA 3457 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 ++N WF+ ++ DFN+ A+ + + D V + L++ TG+++ + A++K L Sbjct 3458 ILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV--IDALASMTGVSLETLLAAIKHL 3515 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 +NG GR I+GS EDE TP DV +Q +G+ QS R +KG W++ + ++ Sbjct 3516 -KNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCII 3574 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-MV 3653 +W++F ++ N L + + + M+ VKHKH +L ++++P L T+ Y N +V Sbjct 3575 TAFVKWTMFMYVTTN-MLSITFCALCVISLTMLLVKHKHLYLTMYIIPVLFTLLYNNYLV 3633 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVL-LILMTARTVYDDGARRVWTLM 3712 ++ + WL S+ + D V+Y +++ ++ +T R++ + + Sbjct 3634 VYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGMLLLIGMVFVTLRSINQYLFSFIMFVG 3692 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 V+++V Y G+ L++ I + ++ S+ Y+ M A+ ++ V ++F Sbjct 3693 RVISVVSLWYMGSNLEEEILL--MLASLFGTYTWTTALSMAAAK-VIAKWVAVNVLYFTD 3749 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++ +++ Y F+GY +CY+GLF L+N FR+ LGVY+Y +S QE RYMN+ GL PPK Sbjct 3750 IPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPK 3809 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS +A LN KLLG+GG P I+V+ QSK++DVKC +VVLL+ LQ L V S+SKLW C Sbjct 3810 NSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCS 3869 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIAS 3946 LHN+IL D AFEK+ LL VL + AVD I ++C++ + LQA+ S Sbjct 3870 TLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQS 3929 Query 3947 EFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMA 4005 EF ++ S+ + A++ ++A ++G + + LK+L+K+ N+AKS ++RD A+ RKLE+MA Sbjct 3930 EFVNMASFVEYEVAKKNLDEACSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMA 3989 Query 4006 DQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLT 4065 D A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP Sbjct 3990 DLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSL 4049 Query 4066 TAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWP 4125 A L +++PD + Y D TYA +W+IQ + D+D QL EIS D + WP Sbjct 4050 AANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLHEISDDCN----WP 4105 Query 4126 LIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLA 4183 L++ A R N SA LQNNEL P L+ +G QT T YYN + G+ V A Sbjct 4106 LVIIANRHNEVSATALQNNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSYNGKIVYA 4163 Query 4184 LLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4243 +LSD+ LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+ Sbjct 4164 ILSDVDGLKYTKILKDDGN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVV 4222 Query 4244 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTG 4303 G++++TVRLQAG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H G Sbjct 4223 GTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAG 4282 Query 4304 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4363 TG AITV P+A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4283 TGMAITVKPDATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSY 4341 Query 4364 TLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 L + VC VCG W+ CSC + +QS D +FLNGF V Sbjct 4342 VLTHDVCQVCGFWRDGSCSCVST-DTTVQSKDT-NFLNGFGV 4381 Score = 609 bits (1570), Expect = 4e-173, Method: Composition-based stats. Identities = 225/1061 (21%), Positives = 382/1061 (36%), Gaps = 176/1061 (17%) Query 43 RQHLKDGTCGLVEVE----------KGVLPQLEQPYVFIKRSDA---RTAPHGHVMVEL- 88 + L+ LV +G P +F +RS R A + HV +L Sbjct 94 QDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLY 153 Query 89 VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKNGNKGA-------GGHS 135 + + G+ +G +G+ +G ++P + +PV RK + LRK G KGA GG Sbjct 154 MIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFE 211 Query 136 YGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 + + K D D + +P F L+R G YVD C G Sbjct 212 HVYNFKVEDAYDLVHDEPKGKFS---------KKAYALIRGYRGVKPLLYVDQYGCDYTG 262 Query 196 YP---LECIKDLLARAGKASCTL-SEQLDFIDTKRGVYCCREHEHEIAWYTERSEK-SYE 250 LE D + KA + S++L F + +AW+ R + Sbjct 263 GLADGLEAYADKTLQEMKALFPIWSQELPF-------------DVTVAWHVVRDPRYVMR 309 Query 251 LQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFM---- 297 LQ+ I+ D +G P V+ +SII + + L M Sbjct 310 LQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSII------LRQHNLVDIMSCFY 363 Query 298 ----GRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCEF-CGTENLT 350 + + Y V +C + + C D C W G+ + CG T Sbjct 364 MEADAVVNAFYGV-DLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYET 422 Query 351 KEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGC 409 + + G LP N V+ A + G + S Y G + FGGC Sbjct 423 GDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVVYFGGC 469 Query 410 VFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEGSEGLNDNL-LEILQKEKVNINIV 464 V+ + N W+P +++ G +TGVVG + NL + L + V + Sbjct 470 VY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQ-HKC 524 Query 465 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNI- 523 G+ E + + S L+ +K ++E+ F + + K + + Sbjct 525 GNLHQRELLGV---------SDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVC 575 Query 524 --GEQKSILSPLY-----------AFASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 570 G +L L AF A ++ ++ S++ E S+ L AAI L Sbjct 576 ADGFMPFLLDDLVPRAYYLAVSGQAFCDYAGKICHAVVSKSKELLDVSLDSL-GAAIHYL 634 Query 571 DGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDW 630 + +++D SD T+ +V + T+ L VL Sbjct 635 NS------KIVDLAQHFSDFGTS-------FVSKIVHFFKTFTTSTALAFAWVLFHVLHG 681 Query 631 LEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCA 690 + + F+++ I ++ S V + AK + +S++ F + Sbjct 682 AYIVVESDIYFVKN---IPRYAS-----AVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGR 733 Query 691 DSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMP---LKAPKEIIFLEGETL 747 I + G+K+ + G + HS L + L MP K ++ I+L+G Sbjct 734 RRICLSGSKIYEVERG---LLHSSQL------PLDVYDLTMPSQVQKTKQKPIYLKGSGS 784 Query 748 PTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMM 807 + V + T L P E P V +CI + + + Y + + Sbjct 785 DFSLADSVVEVVTTSLTPC-----GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHV 839 Query 808 VTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELG 865 + A VTF + TV E+ K++ + +ELD+ + +LN C + V+ Sbjct 840 GLLDQAWRVPCAGRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDT 899 Query 866 TEVNEFACVVADAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYC 922 ++ EF VV DA+ + L P EL + L + + +LFDE+GE LA +YC Sbjct 900 VDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYC 959 Query 923 SFYPPDEDE--EEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL 980 +F P++D+ EE EE++ E T E +S L+ + Sbjct 960 AFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 1019 Query 981 DDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 1021 DSQ Q + + IQ V + V+ Sbjct 1020 TSDSQVEEDVQMSDFVDLESVIQDYENVCFEFYTTEPEFVK 1060 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 111/251 (44%), Gaps = 17/251 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + T + V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 1264 HPDSATLVSDI 1274 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 1717 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 N V + G V + + L + V C C LKG++A+ + G + Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYGDV 1172 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1834 V C CG+ L+ + PF A + LK F Y+ Sbjct 1173 --------VSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1835 HYKHITSKETLYCIDG 1850 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 3515 bits (9115), Expect = 0.0, Method: Composition-based stats. Identities = 1061/2918 (36%), Positives = 1616/2918 (55%), Gaps = 117/2918 (4%) Query 1531 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 1588 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 1648 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 1708 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 1709 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 1768 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 1769 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1828 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1829 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1887 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1946 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDILNAKLG 1939 Query 1947 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 2003 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 2004 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 2063 ++ + N FDVLK +D +++ D K E I L Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAK-------EPKEINIIKLS 2042 Query 2064 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 2122 K +V +I+ + +K + + D+ ++ ++ N LSR + + T+ Sbjct 2043 GVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTIR 2102 Query 2123 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 2179 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFGW 2155 Query 2180 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 2237 + + K T +A + + +F K ++ II I+ L + Sbjct 2156 IKIS----ADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFN 2211 Query 2238 VCLGSLIY--------------STAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 ++I+ + + + + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 2342 GLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 +Q+ ++ + ++ W + L+++L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELLMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRH 2387 Query 2400 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 2459 V GC+ S C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYK 2447 Query 2460 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 2519 G+TFI+ E A DLS + KRPI PTD + + V V + L++D+ GQ+TY+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNAS 2507 Query 2520 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 2579 FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKILITT 2565 Query 2580 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 2639 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARK 2625 Query 2640 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKH 2685 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 + VAK ++ IW+V F LS + +++ A K L +LT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLELTYNKQMANVSVLTTPF 2745 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTR 2818 +LKGG + + ++ ++LV + + P + + K YK +D GV R Sbjct 2746 SLKGGAVFSYFVYVCFVLSLVCFI---GLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIR 2802 Query 2819 DIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 D++ D CFANK FD W+ G Y+N ACP++ AV+ ++ G V +P +LR Sbjct 2803 DVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDFGSTVFNVPTKVLRY 2862 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 LHF+ SA G CYTP I Y++F S CVL++ CT+F A G P PYCY Sbjct 2863 -GYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTD 2921 Query 2937 NVLEGSVAYESLRPDTRYVLMDG-SIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAG 2995 +++ + Y SL P RY L + I+ P EG VR+V T YCR G CE ++ G Sbjct 2922 GLMQNASLYSSLVPHVRYNLANAKGFIRLPEVLREGLVRIVRTRSMSYCRVGLCEEADEG 2981 Query 2996 VCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAI 3055 +C + +G WVLNNDYYRSLPG FCG D +L+ +F L QP+ L ++AS +AG I+A+ Sbjct 2982 ICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAV 3041 Query 3056 VVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFY 3115 +V YY ++ +RAFG+Y+ +V N +++ ++F +L + VY L VY++ Y Y T Y Sbjct 3042 IVVLGFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLY 3101 Query 3116 LTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTF 3175 +++S + H+QW+VM+ ++P W + YI + + H +W FS R++ + S TF Sbjct 3102 FPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFS--YCRQLGTSVRSDGTF 3159 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 EE AL TF++ K+ Y KL++ L +NRYL+LYNKY+Y+SG MDT +YREAAC LA Sbjct 3160 EEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLA 3217 Query 3236 KALNDF-SNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 KA++ F +N+GSDVLYQPP S++++ LQSG KM P+ KVE C+V VT G TLNGLW Sbjct 3218 KAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLW 3277 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 LDD VYCPRHVIC++ DM NP+Y +LL R ++ +F V + L V+ + MQ C+L L V Sbjct 3278 LDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTV 3337 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 N +TPKY F ++PG+TF+VLA YNG P G + MR ++TIKGSFL GSCGSVG+ Sbjct 3338 TLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYV 3397 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 I DCV F YMH +EL TG H GTD G+FYGP+ D Q Q D +VN +AWLYAA Sbjct 3398 IMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAA 3457 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 ++N WF+ ++ DFN+ A+ + + D V + L++ TG+++ + A++K L Sbjct 3458 ILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV--IDALASMTGVSLETLLAAIKRL 3515 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 +NG GR I+GS EDE TP DV +Q +G+ QS R +KG W++ + ++ Sbjct 3516 -KNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCII 3574 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-MV 3653 +W++F ++ N L + + + AM+ VKHKH +L ++++P L T+ Y N +V Sbjct 3575 TAFVKWTMFMYVTTN-MLSITFCALCVISLAMLLVKHKHLYLTMYIIPVLFTLLYNNYLV 3633 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVL-LILMTARTVYDDGARRVWTLM 3712 ++ + WL S+ + D V+Y +++ ++ +T R++ D + + Sbjct 3634 VYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGMLLLIGMVFVTLRSINHDLFSFIMFVG 3692 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 V+++V Y G+ L++ I + ++ S+ Y+ M A+ ++ V ++F Sbjct 3693 RVISVVSLWYMGSNLEEEILL--MLASLFGTYTWTTALSMAAAK-VIAKWVAVNVLYFTD 3749 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++ +++ Y F+GY +CY+GLF L+N FR+ LGVY+Y +S QE RYMN+ GL PPK Sbjct 3750 IPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPK 3809 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS +A LN KLLG+GG P I+V+ QSK++DVKC + LL+ LQ L V S+SKLW C Sbjct 3810 NSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANGGLLNCLQHLHVASNSKLWQYCS 3869 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIAS 3946 LHN+IL D AFEK+ LL VL + AVD I ++C++ + LQA+ S Sbjct 3870 TLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQS 3929 Query 3947 EFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMA 4005 EF ++ S+ + A++ ++A ++G + + LK+L+K+ N+AKS ++RD A+ RKLE+MA Sbjct 3930 EFVNMASFVEYEVAKKNLDEACSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMA 3989 Query 4006 DQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLT 4065 D A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP Sbjct 3990 DLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSL 4049 Query 4066 TAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWP 4125 A L +++PD + Y D TYA +W+IQ + D+D QL EIS D + WP Sbjct 4050 AANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLHEISDDCN----WP 4105 Query 4126 LIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLA 4183 L++ A R N SA LQNNEL P L+ +G QT T YYN + G+ V A Sbjct 4106 LVIIANRHNEVSATVLQNNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSYNGKIVYA 4163 Query 4184 LLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4243 +LSD+ LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+ Sbjct 4164 ILSDVDGLKYTKILKDDGN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVV 4222 Query 4244 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTG 4303 G++++TVRLQAG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H G Sbjct 4223 GTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAG 4282 Query 4304 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4363 TG AITV P+A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4283 TGMAITVKPDATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSY 4341 Query 4364 TLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 L + VC VCG W+ CSC + +QS D +FLN Sbjct 4342 VLTHDVCQVCGFWRDGSCSCVST-DTTVQSKDT-NFLN 4377 Score = 603 bits (1555), Expect = 4e-171, Method: Composition-based stats. Identities = 226/1061 (21%), Positives = 380/1061 (36%), Gaps = 176/1061 (17%) Query 43 RQHLKDGTCGLVEVE----------KGVLPQLEQPYVFIKRSDA---RTAPHGHVMVEL- 88 + L+ LV +G P +F +RS R A + HV +L Sbjct 94 QDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLY 153 Query 89 VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKNGNKGA-------GGHS 135 + + G+ +G +G+ +G ++P + +PV RK + LRK G KGA GG Sbjct 154 MIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIAPWVMYLRKCGEKGAYIKDYKRGGFE 211 Query 136 YGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 + + K D D + +P F L+R G YVD C G Sbjct 212 HVYNFKVEDAYDLVHDEPKGKFS---------KKAYALIRGYRGVKPLLYVDQYGCDYTG 262 Query 196 YP---LECIKDLLARAGKASCTL-SEQLDFIDTKRGVYCCREHEHEIAWYTERSEK-SYE 250 LE D + KA + S++L F + +AW+ R + Sbjct 263 GLADGLEAYADKTLQEMKALFPIWSQELPF-------------DVTVAWHVVRDPRYVMR 309 Query 251 LQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFM---- 297 LQ+ I+ D +G P V+ +SII + + L M Sbjct 310 LQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSII------LRQHNLVDIMSCFY 363 Query 298 ----GRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCEF-CGTENLT 350 + + Y V +C + + C D C W G+ + CG T Sbjct 364 MEADAVVNAFYGV-DLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYET 422 Query 351 KEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGC 409 + + G LP N V+ A + G + S Y G + FGGC Sbjct 423 GDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVVYFGGC 469 Query 410 VFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEGSEGLNDNL-LEILQKEKVNINIV 464 V+ + N W+P +++ G +TGVVG + NL + L + V + Sbjct 470 VY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQ-HKC 524 Query 465 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNI- 523 G+ E + + S L+ +K ++E+ F + + K + + Sbjct 525 GNLHQRELLGV---------SDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVC 575 Query 524 --GEQKSILSPLY-----------AFASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 570 G +L L AF A ++ ++ S++ E SV L AAI L Sbjct 576 ADGFMPFLLDDLVPRAYYLAVSGQAFCDYAGKICHAVVSKSKELLDVSVDSL-GAAIHYL 634 Query 571 DGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDW 630 + +++D SD T+ +V + T+ L VL Sbjct 635 NS------KIVDLAQHFSDFGTS-------FVSKIVHFFKTFTTSTALAFAWVLFHVLHG 681 Query 631 LEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCA 690 + + F ++ I ++ S V + AK +S++ F + Sbjct 682 AYIVVESDIYFGKN---IPRYAS-----AVAQAFRSGAKVGLDSLRVTFIDGLSCFKIGR 733 Query 691 DSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMP---LKAPKEIIFLEGETL 747 I + G+K+ + G + HS L + L MP K ++ I+L+G Sbjct 734 RRICLSGSKIYEVERG---LLHSSQL------PLDVYDLTMPSQVQKTKQKGIYLKGSGS 784 Query 748 PTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMM 807 + V + T L P E P V +CI + + + Y + + Sbjct 785 DFSLADSVVEVVTTSLTPC-----GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHV 839 Query 808 VTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELG 865 + A VTF + TV E+ K++ + +ELD+ + +LN C + V+ Sbjct 840 GLLDQAWRVPCAGRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDT 899 Query 866 TEVNEFACVVADAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYC 922 ++ EF VV DA+ + L P EL + L + + +LFDE+GE LA +YC Sbjct 900 VDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYC 959 Query 923 SFYPPDEDE--EEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL 980 +F P++D+ EE EE++ E T E +S L+ + Sbjct 960 AFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 1019 Query 981 DDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 1021 DSQ Q + + IQ V + V+ Sbjct 1020 TSDSQVEEDVQMSDFGDLESVIQDYENVCFEFYTTEPEFVK 1060 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 111/251 (44%), Gaps = 17/251 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + T + V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 1264 HPDSATLVSDI 1274 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 1717 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 N V + G V + + L + V C C LKG++A+ + G + Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYGDV 1172 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1834 V C CG+ L+ + PF A + LK F Y+ Sbjct 1173 --------VSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1835 HYKHITSKETLYCIDG 1850 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 3513 bits (9109), Expect = 0.0, Method: Composition-based stats. Identities = 1063/2918 (36%), Positives = 1617/2918 (55%), Gaps = 117/2918 (4%) Query 1531 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 1588 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGSFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 1648 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 1708 L + KW+ + K A+NNC++ + L LQ + LKF Q+A+ R+G A Sbjct 1646 MLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQSLNLKFKIVQWQEAWLEFRSGRPA 1705 Query 1709 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 1768 F +L+LA G+ D R+ + +F +L + CK CG +Q GV+AV Sbjct 1706 RFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGVDAV 1764 Query 1769 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1828 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFK 1822 Query 1829 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1887 G+ + GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1946 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDILNAKLG 1939 Query 1947 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 2003 + E KVT +P GDVV Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYERGCITFGKPVIWLSHEQASLNSLTY 1999 Query 2004 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 2063 ++ + N FDVLK +D +++ D K E I L Sbjct 2000 ----------FNRPLLVDENKFDVLKVDDVDDGGDISESDAK-------EPKEINIIKLS 2042 Query 2064 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 2122 K +V +I+ + +K + + D+ ++ ++ N LSR + + T+ Sbjct 2043 GVKKPFKVEDSVIVNDDTSEIKYVKSLSIVDVYDMWLTGCRCVVRTANALSRAVNVPTIR 2102 Query 2123 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 2179 G+ V S+P D + KP N VV N ++ C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPVFN-VVKAVRNKIS-----ACFNFIKWLFVLLFGW 2155 Query 2180 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 2237 + + K T +A + + +F K ++ II I+ L + Sbjct 2156 IKIS----ADNKVIYTTEVASKLTCKLVALAFKNAFLTFKWSVVARGACIIATIFLLWFN 2211 Query 2238 VCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 ++I+S L + + + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 2342 GLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 +Q+ ++ F+ ++ W + L+++L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAHVFMRFYIIIASFIKLFSLFRH 2387 Query 2400 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 2459 V GC+ S C+ CYKRNR+ RV+C+TIV G+ R + ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDAMANGGTGFCSKHQWNCIDCDSYK 2447 Query 2460 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 2519 G+TFI+ E A DLS + KRPI PTD + + V V + L++D+ GQ+TY+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLFYDRDGQRTYDDVNAS 2507 Query 2520 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 2579 FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLITT 2565 Query 2580 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 2639 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQICKVLDTFLSCARK 2625 Query 2640 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKGDNIVAADLGVLIQNSAKH 2685 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 + VAK ++ IW+V F LS + +++ A K L KLT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPF 2745 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTR 2818 +LKGG + + ++ ++LV + + P + + K YK +D GV R Sbjct 2746 SLKGGAVFSYFVYVCFVLSLVCFI---GLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIR 2802 Query 2819 DIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 D++ D CFANK FD W+ G Y+N ACP++ AV+ ++ G V +P +LR Sbjct 2803 DVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVVDQDFGSTVFNVPTKVLRY 2862 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 LHF+ SA G CYTP I Y++F S CVL++ CT+F A G P PYCY Sbjct 2863 -GYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFAMADGSPQPYCYTD 2921 Query 2937 NVLEGSVAYESLRPDTRYVLMDG-SIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAG 2995 +++ + Y SL P RY L + I+FP EG VR+V T YCR G CE ++ G Sbjct 2922 GLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRIVRTRSMPYCRVGLCEEADEG 2981 Query 2996 VCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAI 3055 +C + +G WVLNNDYYRSLPG FCG D +L+ +F L QP+ L ++AS +AG I+A+ Sbjct 2982 ICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAV 3041 Query 3056 VVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFY 3115 +V + YY ++ +RAFG+Y+ +V N +++ ++F +L + VY L VY++ Y Y T Y Sbjct 3042 IVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLY 3101 Query 3116 LTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTF 3175 +++S + H+QW+VM+ ++P W + YI + + H +W FS R++ + S TF Sbjct 3102 FPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFS--YCRQLGTSVRSDGTF 3159 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 EE AL TF++ K+ Y KL++ L +NRYL+LYNKY+Y+SG MDT +YREAAC LA Sbjct 3160 EEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLA 3217 Query 3236 KALNDF-SNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 KA++ F +N+GSDVLYQPP S++++ LQSG KM P+ KVE C+V VT G TLNGLW Sbjct 3218 KAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCIVSVTYGNMTLNGLW 3277 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 L D VYCPRHVIC++ DM NP+Y +LL R ++ +F V + L V+ + MQ C+L L V Sbjct 3278 LGDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMQGCMLVLTV 3337 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 N +TPKY F ++PG+TF+VLA YNG P G + MR ++TIKGSFL GSCGSV + Sbjct 3338 TLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVVYV 3397 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 I DCV F YMH +EL TG H GTD G+FYGP+ D Q Q D +VN +AWLYAA Sbjct 3398 IMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAA 3457 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 ++N WF+ ++ DFN+ A+ + + D V + L++ TG+++ + A++K L Sbjct 3458 ILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV--IDALASMTGVSLETLLAAIKHL 3515 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 +NG GR I+GS EDE TP DV +Q +G+ QS R +KG W++ + ++ Sbjct 3516 -KNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLVKGIVCWIMASTFLFSCII 3574 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-MV 3653 +W++F ++ N L + + + M+ VKHKH +L ++++P L T+ Y N +V Sbjct 3575 TAFVKWTMFMYVTTN-MLSITFCALCVISLTMLLVKHKHLYLTMYIIPVLFTLLYNNYLV 3633 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVL-LILMTARTVYDDGARRVWTLM 3712 ++ + WL S+ + D V+Y +++ ++ +T R++ + + Sbjct 3634 VYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGMLLLIGMVFVTLRSINQYLFSFIMFVG 3692 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 V+++V Y G+ L++ I + ++ S+ Y+ M A+ ++ V ++F Sbjct 3693 RVISVVSLWYMGSNLEEEILL--MLASLFGTYTWTTALSMAAAK-VIAKWVAVNVLYFTD 3749 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++ +++ Y F+GY +CY+GLF L+N FR+ LGVY+Y +S QE RYMN+ GL PPK Sbjct 3750 IPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPK 3809 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS +A LN KLLG+GG P I+V+ QSK++DVKC +VVLL+ LQ L V S+SKLW C Sbjct 3810 NSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWQYCS 3869 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIAS 3946 LHN+IL D AFEK+ LL VL + AVD I ++C++ + LQA+ S Sbjct 3870 TLHNEILATSDLGVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQS 3929 Query 3947 EFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMA 4005 EF ++ S+ + A++ ++A ++G + + LK+L+K+ N+AKS ++RD A+ RKLE+MA Sbjct 3930 EFVNMASFVEYEVAKKNLDEACSSGSANQQQLKQLEKACNIAKSAYERDRAVARKLERMA 3989 Query 4006 DQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLT 4065 D A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP Sbjct 3990 DLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSL 4049 Query 4066 TAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWP 4125 A L +++PD + Y D TYA +W+IQ + D+D QL EIS D + WP Sbjct 4050 AANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQTIQDSDGTNKQLHEISDDCN----WP 4105 Query 4126 LIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLA 4183 L++ A R N SA LQNNEL P L+ +G QT T YYN + G+ V A Sbjct 4106 LVIIANRHNEVSATALQNNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSYNGKIVYA 4163 Query 4184 LLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4243 +LSD+ LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+ Sbjct 4164 ILSDVDGLKYTKILKDDGN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVV 4222 Query 4244 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTG 4303 G++++TVRLQAG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H G Sbjct 4223 GTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAG 4282 Query 4304 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4363 TG AITV P+A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4283 TGMAITVKPDATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSY 4341 Query 4364 TLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 L + VC VCG W+ CSC + +QS D +FLN Sbjct 4342 VLTHDVCQVCGFWRDGSCSCVST-DTTVQSKDT-NFLN 4377 Score = 610 bits (1572), Expect = 4e-173, Method: Composition-based stats. Identities = 225/1061 (21%), Positives = 382/1061 (36%), Gaps = 176/1061 (17%) Query 43 RQHLKDGTCGLVEVE----------KGVLPQLEQPYVFIKRSDA---RTAPHGHVMVEL- 88 + L+ LV +G P +F +RS R A + HV +L Sbjct 94 QDALQSREAVLVTPPLGMSLEACYVRGCNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLY 153 Query 89 VAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKNGNKGA-------GGHS 135 + + G+ +G +G+ +G ++P + +PV RK + LRK G KGA GG Sbjct 154 MIDPAGVCFG-AGQFVGWVIP-LAFMPVQSRKFIVPWVMYLRKCGEKGAYNKDHKRGGFE 211 Query 136 YGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDG 195 + + K D D + +P F L+R G YVD C G Sbjct 212 HVYNFKVEDAYDLVHDEPKGKFS---------KKAYALIRGYRGVKPLLYVDQYGCDYTG 262 Query 196 YP---LECIKDLLARAGKASCTL-SEQLDFIDTKRGVYCCREHEHEIAWYTERSEK-SYE 250 LE D + KA + S++L F + +AW+ R + Sbjct 263 GLADGLEAYADKTLQEMKALFPIWSQELPF-------------DVTVAWHVVRDPRYVMR 309 Query 251 LQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGFM---- 297 LQ+ I+ D +G P V+ +SII + + L M Sbjct 310 LQSASTIRSVAYVANPTEDLCDGSVVIKEPVHVYADDSII------LRQHNLVDIMSCFY 363 Query 298 ----GRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCEF-CGTENLT 350 + + Y V +C + + C D C W G+ + CG T Sbjct 364 MEADAVVNAFYGV-DLKDCGFVMQFGYIDCEQDLCDFKGWVPGNMIDGFACTTCGHVYET 422 Query 351 KEGA-TTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGC 409 + + G LP N V+ A + G + S Y G + FGGC Sbjct 423 GDLLAQSSGVLPVNPVLHTKSAAGYGG-FGCKDSFTLY------------GQTVVYFGGC 469 Query 410 VFSYVGCHNKCAYWVPRASANI----GCNHTGVVGEGSEGLNDNL-LEILQKEKVNINIV 464 V+ + N W+P +++ G +TGVVG + NL + L + V + Sbjct 470 VY-WSPARN---IWIPILKSSVKSYDGLVYTGVVGCKAIVKETNLICKALYLDYVQ-HKC 524 Query 465 GDFKLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNI- 523 G+ E + + S L+ +K ++E+ F + + K + + Sbjct 525 GNLHQRELLGV---------SDVWHKQLLLNRGVYKPLLENIDYFNMRRAKFSLETFTVC 575 Query 524 --GEQKSILSPLY-----------AFASEAARVVRSIFSRTLETAQNSVRVLQKAAITIL 570 G +L L AF A ++ ++ S++ E S+ L AAI L Sbjct 576 ADGFMPFLLDDLVPRAYYLAVSGQAFCDYAGKICHAVVSKSKELLDVSLDSL-GAAIHYL 634 Query 571 DGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDW 630 + +++D SD T+ +V + T+ L VL Sbjct 635 NS------KIVDLAQHFSDFGTS-------FVSKIVHFFKTFTTSTALAFAWVLFHVLHG 681 Query 631 LEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCA 690 + + F+++ I ++ S V + AK + +S++ F + Sbjct 682 AYIVVESDIYFVKN---IPRYAS-----AVAQAFRSVAKVVLDSLRVTFIDGLSCFKIGR 733 Query 691 DSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMP---LKAPKEIIFLEGETL 747 I + G+K+ + G + HS L + L MP K ++ I+L+G Sbjct 734 RRICLSGSKIYEVERG---LLHSSQL------PLDVYDLTMPSQVQKTKQKPIYLKGSGS 784 Query 748 PTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMM 807 + V + T L P E P V +CI + + + Y + + Sbjct 785 DFSLADSVVEVVTTSLTPC-----GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHV 839 Query 808 VTNNTFTLKGGAPTKVTFGDD-TVIEVQGY-KSVNITFELDERIDKVLNEKCSAYTVELG 865 + A VTF + TV E+ K++ + +ELD+ + +LN C + V+ Sbjct 840 GLLDQAWRVPCAGRCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDT 899 Query 866 TEVNEFACVVADAVIKTLQPVSEL---LTPLGIDLDEWSMATYYLFDESGEFKLASHMYC 922 ++ EF VV DA+ + L P EL + L + + +LFDE+GE LA +YC Sbjct 900 VDMEEFYAVVIDAIEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYC 959 Query 923 SFYPPDEDE--EEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL 980 +F P++D+ EE EE++ E T E +S L+ + Sbjct 960 AFTAPEDDDFLEESGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 1019 Query 981 DDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 1021 DSQ Q + + IQ V + V+ Sbjct 1020 TSDSQVEEDVQMSDFVDLESVIQDYENVCFEFYTTEPEFVK 1060 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 111/251 (44%), Gaps = 17/251 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV DI++ +K+VK VVVN AN ++ HGGGVA A+ A E+ D + Sbjct 1272 CITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVK 1331 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + G G V +G L K L+VVGP+ + LL+ Y++ N+++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLIS 1391 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + T + V L ++ +D + ++ K++ ++++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAERLSFNVGR 1451 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILSNDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 1264 HPDSATLVSDI 1274 P+ +V+ Sbjct 1504 VPEGWRVVNKF 1514 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 ++ +V L K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLDLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 1717 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 N V + G V + + L + V C C LKG++A+ + G + Sbjct 1117 KIPANIVVPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYGDV 1172 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1834 V C CG+ L+ + PF A + LK F Y+ Sbjct 1173 --------VSHVCKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRSVYKAA 1216 Query 1835 HYKHITSKETLYCIDG 1850 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1 Length=4441 Score = 3509 bits (9100), Expect = 0.0, Method: Composition-based stats. Identities = 1066/2946 (36%), Positives = 1604/2946 (54%), Gaps = 121/2946 (4%) Query 1512 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 1564 KDW + G++ +K + + DG T + + LL+ Sbjct 1563 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1619 Query 1565 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 1624 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1620 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1678 Query 1625 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 1684 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1679 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1737 Query 1685 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 1744 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1738 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1797 Query 1745 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 1804 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1798 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1855 Query 1805 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1864 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1865 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1921 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1972 Query 1922 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1973 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2030 Query 1981 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 2038 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2031 KGCETFGKPVIWLCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2074 Query 2039 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 2097 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2075 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2134 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 2154 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2135 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2190 Query 2155 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 2214 R + ++ + F + L FT T IA ++ L+ + Sbjct 2191 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIF----YTTEIASKFTFNLFCLALKNA 2244 Query 2215 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 2258 F + F K + WF L ++V I+ + + + G Sbjct 2245 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2304 Query 2259 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 2316 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2305 LVTICDFYSKLGVGFTS----HFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFD 2360 Query 2317 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQM 2374 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2361 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2420 Query 2375 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 2434 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2421 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2480 Query 2435 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 2494 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2481 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2540 Query 2495 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 2554 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2541 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2598 Query 2555 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 2614 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2599 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2658 Query 2615 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 2673 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2659 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2718 Query 2674 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 2733 + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ A Sbjct 2719 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKAC 2778 Query 2734 KKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPV 2793 K L KLT V ++TT +LKGG +++N L L ++L+ + + + P Sbjct 2779 VKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALLPT 2835 Query 2794 HVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKAC 2851 + + K +K ID GV RDI+ D CFANK FD W+ G Y N C Sbjct 2836 YSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMDC 2895 Query 2852 PLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATS 2911 P++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF S Sbjct 2896 PIVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYAS 2954 Query 2912 ACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLE 2970 CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ E Sbjct 2955 GCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISE 3014 Query 2971 GSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNM 3030 G VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 3015 GIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQF 3074 Query 3031 FTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFT 3090 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ ++F Sbjct 3075 FSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFL 3134 Query 3091 VLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICIST 3150 +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ + Sbjct 3135 MLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIA 3194 Query 3151 KHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLAL 3210 H W FS R++ N + STFEE +L TF++ K+ Y +L++ V YNRYL+L Sbjct 3195 NHVLWLFS--YCRKIGVNVCNDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRYLSL 3250 Query 3211 YNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKM 3269 YNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG KM Sbjct 3251 YNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKM 3310 Query 3270 AFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNF 3329 P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC S +M P+Y LL R + +F Sbjct 3311 VSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDF 3370 Query 3330 LVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3389 + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G + Sbjct 3371 TIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAF 3430 Query 3390 QCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 3449 MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ Sbjct 3431 HVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYR 3490 Query 3450 DRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3509 D Q Q D TVNV+AWLYAA++N WF+ ++ DFN+ AM + + D Sbjct 3491 DAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADL 3550 Query 3510 VDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ 3569 V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Q Sbjct 3551 V--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKLQ 3607 Query 3570 SAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFV 3629 S KR IK T +W+L++ ++ +W++F ++ + + + ++ +F M+ V Sbjct 3608 SKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTH-MIGVTLCVLCFVSFMMLLV 3666 Query 3630 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASA 3688 KHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3667 KHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYEVFYGCIL 3726 Query 3689 VVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVV 3748 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3727 CVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYTWTT 3784 Query 3749 TTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTL 3808 + +A+ IV + +F ++ I+L Y F+GY +CY+G F LLN FR+ + Sbjct 3785 ILSLAIAK-IVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPM 3843 Query 3809 GVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCT 3868 GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++DVKC Sbjct 3844 GVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCA 3903 Query 3869 SVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD-- 3926 +VVLL+ LQ L V S+S+LW C LHN+IL D + AF+K+ LL VL + AVD Sbjct 3904 NVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDTK 3963 Query 3927 ----INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLK 3981 I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ +K+L+ Sbjct 3964 CLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLE 4023 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4041 K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLD Sbjct 4024 KACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLD 4083 Query 4042 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQV 4101 N ALN+I++NA GCVPLN IP A L ++IPD + D YA ++W IQ V Sbjct 4084 NQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHIQTV 4143 Query 4102 VDADSKIVQLSEISMDNSPNLAWPLIVTALRANSA--VKLQNNELSPVALRQMSCAAGTT 4159 DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ +G+ Sbjct 4144 QDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSD 4199 Query 4160 QTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDT 4219 YYN GR V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4200 MNCNIPTQ--CYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVV-LELDPPCKFSIQD 4256 Query 4220 PKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKA 4279 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD K Sbjct 4257 VKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKT 4316 Query 4280 YKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNP 4339 Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++HP+ Sbjct 4317 YLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDV 4376 Query 4340 KGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSF 4399 G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC +QS D +F Sbjct 4377 DGLCKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SGVAVQSKDL-NF 4433 Query 4400 LNGFAV 4405 LNGF V Sbjct 4434 LNGFGV 4439 Score = 448 bits (1152), Expect = 3e-124, Method: Composition-based stats. Identities = 200/1098 (18%), Positives = 375/1098 (34%), Gaps = 192/1098 (17%) Query 13 HVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIK 72 HVQ +L +RD+ V + + V + +K GT L++ L + YV Sbjct 71 HVQSNL----IRDIFVH---EDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGL 123 Query 73 RSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKN 126 +T +V+ L +G LG +VP G +P K + ++ Sbjct 124 FRSYKTK--RYVVHHLSMTTSTTNFGED--FLGWIVPF-GFMPSYVHKWFQFCRLYIEES 178 Query 127 GNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYV 186 + D D E+ +P + + L+R+ G +V Sbjct 179 DLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQK---------AYALLRQYRGIKPVLFV 229 Query 187 DNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSE 246 D C G +C++ +L + + + +AW+ R Sbjct 230 DQYGCDYSGKLADCLQAY------GHYSLQDMRQKQSVW---LANCDFDIVVAWHVVRDS 280 Query 247 K-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGF 296 + LQT I K D +G P + ++I+ + P + K Sbjct 281 RFVMRLQTIATICGIKYVAQPTEDVVDGAVVIREPVHLLSADAIVLKL-PSLMKVMTHMD 339 Query 297 MGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTKE- 352 I+S+Y V +C + + C D+C W +G+ + C T + E Sbjct 340 DFSIKSIYNV-DLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEV 398 Query 353 GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFS 412 A + G +P+N V+ + + G FG C++ Sbjct 399 KAQSSGVIPENPVL-----------------FTNSTDTVNPDSFNLYGYSVTPFGSCIY- 440 Query 413 YVGCHNKCAYWVPRASANIGC----NHTGVVGEGSEGLNDNLL-EILQKEKVNINIVGDF 467 + W+P +++ ++GVVG S L+ L + V G+ Sbjct 441 WSPRPG---LWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQC-KCGNL 496 Query 468 KLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQK 527 + N + G++ +Q++ + G++ + Sbjct 497 EQNH-------------------ILGVNNSWCRQLLLNRGDYNM---------------- 521 Query 528 SILSPLYAFASEAARVVRSIFSRTLETAQNSVRV------------LQKAAITILDGISQ 575 +L + F R+ F+ + L ++ I +SQ Sbjct 522 -LLKNIDLFVKR-----RADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQ 575 Query 576 YSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW----------LTNIFGTVYEKL 624 +S + D + L + + V YI V +L +Q+ + N F T+ + Sbjct 576 FSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDAS 635 Query 625 KPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNK 684 P WL + G+ F+ + A I AK + TFFKL+ Sbjct 636 APATGWLLYQLLNGL-----------FVVSQANFNFVALIPDYAKILVNKFYTFFKLL-- 682 Query 685 FLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSREETGLLMPLKA-PKE 738 L ++ LK +N +G F S GL G ++P A ++ Sbjct 683 -LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI---------PGFVLPCNAQEQQ 732 Query 739 IIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTPVCINGLMLLEIKDT 796 I F EG + E V+++ ++ ++ S E + P +CI M + Sbjct 733 IYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGD 785 Query 797 EKYCALAPNMMV-TNNTFTLKGGAPTKVTFGDDTVI-EVQGYKSVNITFELDERIDKVLN 854 + + + + + + A KV F + V+ E+ +V + F+LD D +L Sbjct 786 KFFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILG 845 Query 855 EKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDES 911 + CS + VE G V++F VV DA+ L + + + L++ + YLFDE+ Sbjct 846 KVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEA 905 Query 912 GEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQ 970 G+ +AS MYC+F D ED + E+ + + ++D + + Sbjct 906 GDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDED----VVTGDNDDEDVV 961 Query 971 PEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSG 1030 + +ED + D+ G D++ + V T + + Sbjct 962 TGDNDDEDVVTGDNDDEDVVT-GDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDV 1020 Query 1031 YLKLTDNVYIKNADIVEE 1048 D+ + D +E Sbjct 1021 VTGDNDDEDVVTGDNDDE 1038 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 17/254 (7%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 1092 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 1149 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 1150 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPK 1208 SAGIF SL + V V L +K +D + + K + ++ Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVG 1507 Query 1209 EEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDI------NGN 1262 +K K + C ++ ++E L ++ L D+ Sbjct 1508 RVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMT 1559 Query 1263 LHPDSATLVSDIDI 1276 P L++ D+ Sbjct 1560 SLPKDWRLINKFDV 1573 Score = 56.7 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 21/197 (11%) Query 1600 DGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYP 1659 D D + + + ++ Y L V D ++S + + Y Sbjct 1064 DNDDQIVVTGDDVDDIESVYDFDTYKALLV-------FNDVYNDALFVSYGSSVETETYF 1116 Query 1660 QVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCN 1719 +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1117 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1176 Query 1720 KTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 1777 K + G V + + ++ N C CG L G++AV + G + Sbjct 1177 KAIVLPQGGYVADFAYWFLNQFDI---NAYANWCCLKCGF-SFDLNGLDAVFFYGDI--- 1229 Query 1778 QFKKGVQIPCTCGKQAT 1794 V C CG T Sbjct 1230 -----VSHVCKCGHNMT 1241 >sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus OC43 OX=31631 GN=1a PE=1 SV=1 Length=4383 Score = 3508 bits (9096), Expect = 0.0, Method: Composition-based stats. Identities = 1069/2922 (37%), Positives = 1616/2922 (55%), Gaps = 117/2922 (4%) Query 1531 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 1588 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGIFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 1648 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 1708 L + KW+ + K A+NNC++ + L LQ + L F Q+A+ R+G A Sbjct 1646 MLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLHLTFKIVQWQEAWLEFRSGRPA 1705 Query 1709 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 1768 F AL+LA G+ D R+ + +F +L + CK CG +Q G++AV Sbjct 1706 RFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGLDAV 1764 Query 1769 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1828 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFI 1822 Query 1829 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1887 G+ GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1946 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDSLNSKLG 1939 Query 1947 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 2003 + E K+T +P GDVV + Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGCITFGKPVIWLSHEKASLNSLTY 1999 Query 2004 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 2063 ++ + N FDVLK +D + + K E I L Sbjct 2000 ----------FNRPLLVDDNKFDVLKVDDVDDSGDSSESGAK-------ETKEINIIKLS 2042 Query 2064 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 2122 K +V +I+ + K + + D+ ++ ++ N LSR + + T+ Sbjct 2043 GVKKPFKVEDSVIVNDDTSETKYVKSLSIVDVYDMWLTGCKYVVRTANALSRAVNVPTIR 2102 Query 2123 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 2179 G+ V S+P D + KP +N V T C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPAVN--VVKAVRNKTSA----CFNFIKWLFVLLFGW 2155 Query 2180 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 2237 + + K T IA + + +F K ++ II I+ L + Sbjct 2156 IKIS----ADNKVIYTTEIASKLTCKLVALAFKNAFLTFKWSMVARGACIIATIFLLWFN 2211 Query 2238 VCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 ++I+S L + + + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 2342 GLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 +Q+ ++ F+ ++ W L++ L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELFMLSTLHWSFRLLVALANMLPAHVFMRFYIIIASFIKLFSLFKH 2387 Query 2400 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 2459 V GC+ S C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYK 2447 Query 2460 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 2519 G+TFI+ E A DLS + KRPI PTD + + V V S+ L++D+ GQ+ Y+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNAS 2507 Query 2520 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 2579 FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLITT 2565 Query 2580 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 2639 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQIYKVLDTFLSCARK 2625 Query 2640 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKH 2685 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 + VAK ++ IW+V F S + +++ A K L KLT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPF 2745 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTR 2818 +LKGG + + ++ ++LV + + P + + K YK +D GV R Sbjct 2746 SLKGGAVFSYFVYVCFVLSLVCFI---GLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIR 2802 Query 2819 DIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 D++ D CFANK FD W+ G Y+N ACP++ AVI ++ G V +P +LR Sbjct 2803 DVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVIDQDFGSTVFNVPTKVLRY 2862 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 LHF+ SA G CYTP I Y++F S CVL++ CT+F A G P PYCY Sbjct 2863 -GYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFTMADGSPQPYCYTD 2921 Query 2937 NVLEGSVAYESLRPDTRYVLMDG-SIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAG 2995 +++ + Y SL P RY L + I+FP EG VRVV T YCR G CE ++ G Sbjct 2922 GLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRVVRTRSMSYCRVGLCEEADEG 2981 Query 2996 VCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAI 3055 +C + +G WVLNNDYYRSLPG FCG D +L+ +F L QP+ L ++AS +AG I+A+ Sbjct 2982 ICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAV 3041 Query 3056 VVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFY 3115 +V + YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L VY++ Y Y T Y Sbjct 3042 IVVLVFYYLIKLKRAFGDYTSVVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLY 3101 Query 3116 LTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTF 3175 +++S + H+QW+VM+ ++P W + YI + + H +W FS R++ + S TF Sbjct 3102 FPSEISVIMHLQWLVMYGTIMPLWFCLLYIAVVVSNHAFWVFS--YCRKLGTSVRSDGTF 3159 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 EE AL TF++ K+ Y KL++ L +NRYL+LYNKY+Y+SG MDT +YREAAC LA Sbjct 3160 EEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLA 3217 Query 3236 KALNDF-SNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 KA++ F +N+GSDVLYQPP S++++ LQSG KM P+ KVE C+V VT G TLNGLW Sbjct 3218 KAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCVVSVTYGNMTLNGLW 3277 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 LDD VYCPRHVIC++ DM NP+Y +LL R ++ +F V + L V+ + M+ C+L L V Sbjct 3278 LDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMRGCMLVLTV 3337 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 N +TPKY F ++PG+TF+VLA YNG P G + MR ++TIKGSFL GSCGSVG+ Sbjct 3338 TLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYV 3397 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 I DCV F YMH +EL TG H GTD G+FYGP+ D Q Q D +VN LAWLYAA Sbjct 3398 IMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPIQDYIQSVNFLAWLYAA 3457 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 ++N WF+ ++ DFN+ A+ + + D V + L++ TG+++ + A++K L Sbjct 3458 ILNNCNWFIQSDKCSVEDFNVWALSNGFSQVKSDLV--IDALASMTGVSLETLLAAIKRL 3515 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 +NG GR I+GS EDE TP DV +Q +G+ QS R KGT W++ + ++ Sbjct 3516 -KNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLFKGTVCWIMASTFLFSCII 3574 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-MV 3653 +W++F ++ N F + + + AM+ VKHKH +L +++ P L T+ Y N +V Sbjct 3575 TAFVKWTMFMYVTTNMF-SITFCALCVISLAMLLVKHKHLYLTMYITPVLFTLLYNNYLV 3633 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVL-LILMTARTVYDDGARRVWTLM 3712 ++ + WL S+ + D V+Y +++ ++ +T R++ D + + Sbjct 3634 VYKHTFRGYVYAWLSYYVPSVE-YTYTDEVIYGMLLLVGMVFVTLRSINHDLFSFIMFVG 3692 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 ++++ Y G+ L++ I + ++ S+ Y+ M +A+ ++ V ++F Sbjct 3693 RLISVFSLWYKGSNLEEEILL--MLASLFGTYTWTTVLSMAVAK-VIAKWVAVNVLYFTD 3749 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++ ++L Y F+GY +CY+GLF L+N FR+ LGVY+Y +S QE RYMN+ GL PPK Sbjct 3750 IPQIKIVLLCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPK 3809 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS +A LN KLLG+GG P I+V+ QSK++DVKC +VVLL+ LQ L V S+SKLW C Sbjct 3810 NSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWHYCS 3869 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIAS 3946 LHN+IL D + AFEK+ LL VL + AVD I ++C++ + LQA+ S Sbjct 3870 TLHNEILATSDLSVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQS 3929 Query 3947 EFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMA 4005 EF ++ S+ + A++ ++A +G + + LK+L+K+ N+AKS ++RD A+ +KLE+MA Sbjct 3930 EFVNMASFVEYEVAKKNLDEARFSGSANQQQLKQLEKACNIAKSAYERDRAVAKKLERMA 3989 Query 4006 DQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLT 4065 D A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP Sbjct 3990 DLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSL 4049 Query 4066 TAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWP 4125 A L +++PD + Y D TYA +W+IQ + D+D QL+EIS D + WP Sbjct 4050 AANTLNIIVPDKSVYDQIVDNIYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCN----WP 4105 Query 4126 LIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLA 4183 L++ A R N SA LQNNEL P L+ +G QT T YYN + G+ V A Sbjct 4106 LVIIANRYNEVSATVLQNNELMPAKLKIQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYA 4163 Query 4184 LLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4243 +LSD+ LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+ Sbjct 4164 ILSDVDGLKYTKILKDDGN-FVVLELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVV 4222 Query 4244 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTG 4303 G++++TVRLQAG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H G Sbjct 4223 GTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAG 4282 Query 4304 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4363 TG AITV P+A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4283 TGMAITVKPDATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSY 4341 Query 4364 TLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 L + VC VCG W+ CSC + +QS D +FLNGF V Sbjct 4342 VLTHDVCRVCGFWRDGSCSCVST-DTTVQSKDT-NFLNGFGV 4381 Score = 598 bits (1542), Expect = 6e-170, Method: Composition-based stats. Identities = 226/1108 (20%), Positives = 401/1108 (36%), Gaps = 188/1108 (17%) Query 58 KGVLPQLEQPYVFIKRSDA---RTAPHGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGE 113 +G P+ +F +RS R + HV +L + + G+ G +G+ +G ++P + Sbjct 119 RGCNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLG-AGQFVGWVIP-LAF 176 Query 114 IPVAYRKVL------LRKNGNKGA-------GGHSYGADLKSFDLGDELGTDPYEDFQEN 160 +PV RK + LRK G KGA GG + D K D D++ +P F Sbjct 177 MPVQSRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFS-- 234 Query 161 WNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYP---LECIKDLLARAGKASC-TLS 216 L+R G YVD C G LE D + KA T S Sbjct 235 -------KKAYALIRGYRGVKPLLYVDQYGCDYTGSLADGLEAYADKTLQEMKALFPTWS 287 Query 217 EQLDFIDTKRGVYCCREHEHEIAWYTERSEK-SYELQTPFEIKLAKKF-----DTFNGEC 270 ++L F + +AW+ R + LQ+ I D +G Sbjct 288 QELPF-------------DVIVAWHVVRDPRYVMRLQSAATICSVAYVANPTEDLCDGSV 334 Query 271 ----PNFVFPLNSIIKTIQPRVEKKKLDGFMG--------RIRSVYPVASPNECNQMCLS 318 P V+ +SII + + L M + + Y VA +C + Sbjct 335 VIKEPVHVYADDSII------LRQYNLFDIMSHFYMEADTVVNAFYGVA-LKDCGFVMQF 387 Query 319 TLMKC--DHCGETSWQTGDFVKATCEF-CGTENLTKEG-ATTCGYLPQNAVVKIYCPACH 374 + C D C W G+ + CG + A + G LP N V+ A + Sbjct 388 GYIDCEQDSCDFKGWIPGNMIDGFACTTCGHVYEVGDLIAQSSGVLPVNPVLHTKSAAGY 447 Query 375 NSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGC- 433 G + S Y G + FGGCV+ + N W+P +++ Sbjct 448 GG-FGCKDSFTLY------------GQTVVYFGGCVY-WSPARN---IWIPILKSSVKSY 490 Query 434 ---NHTGVVGEGSEGLNDNL-LEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVE 489 +TGV+G + NL + L + V + G+ E + + S Sbjct 491 DSLVYTGVLGCKAIVKETNLICKALYLDYVQ-HKCGNLHQRELLGV---------SDVWH 540 Query 490 TVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNI---GEQKSILSPLY-----------A 535 ++ +K ++E+ F + + K + + G +L L A Sbjct 541 KQLLINRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQA 600 Query 536 FASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNL 595 F A ++ ++ S++ E S+ L AAI L+ +++D SD T+ Sbjct 601 FCDYADKLCHAVVSKSKELLDVSLDSL-GAAIHYLNS------KIVDLAQHFSDFGTS-- 651 Query 596 VVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTC 655 +V + T+ L VL + + F+++ I ++ S Sbjct 652 -----FVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKN---IPRYAS-- 701 Query 656 ACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKG 715 V + AK + +S++ F + I + G K+ + G + HS Sbjct 702 ---AVAQAFQSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGRKIYEVERG---LLHSSQ 755 Query 716 LYRKCVKSREETGLLMP---LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSE 772 L + L MP KA ++ I+L+G + V + T L P Sbjct 756 L------PLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPC-----G 804 Query 773 AVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD-TVI 831 E P V +CI + + + Y + + + + A +VTF + TV Sbjct 805 YSEPPKVADKICIVDNVYMAKAGDKYYPVVVDDHVGLLDQAWRVPCAGRRVTFKEQPTVK 864 Query 832 EVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSEL- 889 E+ K + + +ELD + +LN C + V+ ++ EF VV DA+ + L P EL Sbjct 865 EIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELE 924 Query 890 --LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQY 947 + L + +LFDE+GE A +YC+F P++D+ + + EE + + Sbjct 925 GVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLEESDVEEDDVEGEE 984 Query 948 EYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVE 1007 T G+P + + E+ +D ++ + ++D + I + Sbjct 985 TDLTIT-SAGQPCVASEQEESSEVLEDTLDDGPSVETSDSQVEEDVEMSDFVDLESVIQD 1043 Query 1008 VQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIV--------------------- 1046 + T + ++V +N ++++ V Sbjct 1044 YENVCFEFYTTEPEFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYK 1103 Query 1047 EEAKKVKPTVVVN--AANVYLKHGGGVA 1072 ++ ++ +VN AN+ L GG VA Sbjct 1104 QQYSQLFVDTLVNKIPANIVLPQGGYVA 1131 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 109/251 (43%), Gaps = 17/251 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV DI++ +K VK VVVN AN ++ HGGGVA A+ A E+ + + Sbjct 1272 CITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVK 1331 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + G G V +G L K L+VVGP+ + LL+ Y++FN ++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLIS 1391 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + T + V L ++ +D + ++ K++ +++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAARLSFNVGR 1451 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILINDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 1264 HPDSATLVSDI 1274 P+ +V+ Sbjct 1504 LPEGWRVVNKF 1514 Score = 51.3 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 74/196 (38%), Gaps = 22/196 (11%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 ++ +V GL K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 1717 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 N + + G V + + L + V C C LKG++A+ + G + Sbjct 1117 KIPANIVLPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYGDV 1172 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1834 V C CG+ L+ + PF A + LK F Y+ Sbjct 1173 --------VSHICKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRIVYKAA 1216 Query 1835 HYKHITSKETLYCIDG 1850 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 3506 bits (9091), Expect = 0.0, Method: Composition-based stats. Identities = 1063/2942 (36%), Positives = 1601/2942 (54%), Gaps = 121/2942 (4%) Query 1512 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 1564 KDW + G++ +K + + DG T + + LL+ Sbjct 1563 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1619 Query 1565 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 1624 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1620 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1678 Query 1625 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 1684 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1679 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1737 Query 1685 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 1744 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1738 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1797 Query 1745 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 1804 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1798 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1855 Query 1805 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1864 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1865 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1921 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1972 Query 1922 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1973 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2030 Query 1981 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 2038 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2031 KGCETFGKPVIWLCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2074 Query 2039 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 2097 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2075 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2134 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 2154 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2135 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2190 Query 2155 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 2214 R + ++ + F + L FT T IA ++ L+ + Sbjct 2191 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIF----YTTEIASKFTFNLFCLALKNA 2244 Query 2215 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 2258 F + F K + WF L ++V I+ + + + G Sbjct 2245 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2304 Query 2259 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 2316 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2305 LVTICDFYSKLGVGFTS----HFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFD 2360 Query 2317 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQM 2374 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2361 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2420 Query 2375 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 2434 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2421 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2480 Query 2435 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 2494 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2481 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2540 Query 2495 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 2554 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2541 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2598 Query 2555 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 2614 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2599 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2658 Query 2615 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 2673 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2659 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2718 Query 2674 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 2733 + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ A Sbjct 2719 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKAC 2778 Query 2734 KKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPV 2793 K L KLT V ++TT +LKGG +++N L L ++L+ + + + P Sbjct 2779 VKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALLPT 2835 Query 2794 HVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKAC 2851 + + K +K ID GV RDI+ D CFANK FD W+ G Y N C Sbjct 2836 YSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMDC 2895 Query 2852 PLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATS 2911 P++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF S Sbjct 2896 PIVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYAS 2954 Query 2912 ACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLE 2970 CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ E Sbjct 2955 GCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISE 3014 Query 2971 GSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNM 3030 G VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 3015 GIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQF 3074 Query 3031 FTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFT 3090 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ ++F Sbjct 3075 FSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFL 3134 Query 3091 VLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICIST 3150 +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ + Sbjct 3135 MLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIA 3194 Query 3151 KHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLAL 3210 H W FS R++ N + STFEE +L TF++ K+ Y +L++ V YNRYL+L Sbjct 3195 NHVLWLFS--YCRKIGVNVCNDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRYLSL 3250 Query 3211 YNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKM 3269 YNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG KM Sbjct 3251 YNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKM 3310 Query 3270 AFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNF 3329 P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC S +M P+Y LL R + +F Sbjct 3311 VSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDF 3370 Query 3330 LVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3389 + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G + Sbjct 3371 TIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAF 3430 Query 3390 QCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 3449 MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ Sbjct 3431 HVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYR 3490 Query 3450 DRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3509 D Q Q D TVNV+AWLYAA++N WF+ ++ DFN+ AM + + D Sbjct 3491 DAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADL 3550 Query 3510 VDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ 3569 V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Q Sbjct 3551 V--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKLQ 3607 Query 3570 SAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFV 3629 S KR IK T +W+L++ ++ +W++F ++ + + + ++ +F M+ V Sbjct 3608 SKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTH-MIGVTLCVLCFVSFMMLLV 3666 Query 3630 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASA 3688 KHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3667 KHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYEVFYGCIL 3726 Query 3689 VVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVV 3748 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3727 CVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYTWTT 3784 Query 3749 TTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTL 3808 + +A+ IV + +F ++ I+L Y F+GY +CY+G F LLN FR+ + Sbjct 3785 ILSLAIAK-IVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPM 3843 Query 3809 GVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCT 3868 GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++DVKC Sbjct 3844 GVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCA 3903 Query 3869 SVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD-- 3926 +VVLL+ LQ L V S+S+LW C LHN+IL D + AF+K+ LL VL + AVD Sbjct 3904 NVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDTK 3963 Query 3927 ----INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLK 3981 I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ +K+L+ Sbjct 3964 CLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLE 4023 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4041 K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLD Sbjct 4024 KACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLD 4083 Query 4042 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQV 4101 N ALN+I++NA GCVPLN IP A L ++IPD + D YA ++W IQ V Sbjct 4084 NQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHIQTV 4143 Query 4102 VDADSKIVQLSEISMDNSPNLAWPLIVTALRANSA--VKLQNNELSPVALRQMSCAAGTT 4159 DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ +G+ Sbjct 4144 QDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSD 4199 Query 4160 QTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDT 4219 YYN GR V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4200 MNCNIPTQ--CYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVV-LELDPPCKFSIQD 4256 Query 4220 PKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKA 4279 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD K Sbjct 4257 VKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKT 4316 Query 4280 YKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNP 4339 Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++HP+ Sbjct 4317 YLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDV 4376 Query 4340 KGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSF 4399 G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC +QS D +F Sbjct 4377 DGLCKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SGVAVQSKDL-NF 4433 Query 4400 LN 4401 LN Sbjct 4434 LN 4435 Score = 449 bits (1154), Expect = 2e-124, Method: Composition-based stats. Identities = 200/1098 (18%), Positives = 375/1098 (34%), Gaps = 192/1098 (17%) Query 13 HVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIK 72 HVQ +L +RD+ V + + V + +K GT L++ L + YV Sbjct 71 HVQSNL----IRDIFVH---EDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGL 123 Query 73 RSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKN 126 +T +V+ L +G LG +VP G +P K + ++ Sbjct 124 FRSYKTK--RYVVHHLSMTTSTTNFGED--FLGWIVPF-GFMPSYVHKWFQFCRLYIEES 178 Query 127 GNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYV 186 + D D E+ +P + + L+R+ G +V Sbjct 179 DLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQK---------AYALLRQYRGIKPVLFV 229 Query 187 DNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSE 246 D C G +C++ +L + + + +AW+ R Sbjct 230 DQYGCDYSGKLADCLQAY------GHYSLQDMRQKQSVW---LANCDFDIVVAWHVVRDS 280 Query 247 K-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGF 296 + LQT I K D +G P + ++I+ + P + K Sbjct 281 RFVMRLQTIATICGIKYVAQPTEDVVDGAVVIREPVHLLSADAIVLKL-PSLMKVMTHMD 339 Query 297 MGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTKE- 352 I+S+Y V +C + + C D+C W +G+ + C T + E Sbjct 340 DFSIKSIYNV-DLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEV 398 Query 353 GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFS 412 A + G +P+N V+ + + G FG C++ Sbjct 399 KAQSSGVIPENPVL-----------------FTNSTDTVNPDSFNLYGYSVTPFGSCIY- 440 Query 413 YVGCHNKCAYWVPRASANIGC----NHTGVVGEGSEGLNDNLL-EILQKEKVNINIVGDF 467 + W+P +++ ++GVVG S L+ L + V G+ Sbjct 441 WSPRPG---LWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQC-KCGNL 496 Query 468 KLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQK 527 + N + G++ +Q++ + G++ + Sbjct 497 EQNH-------------------ILGVNNSWCRQLLLNRGDYNM---------------- 521 Query 528 SILSPLYAFASEAARVVRSIFSRTLETAQNSVRV------------LQKAAITILDGISQ 575 +L + F R+ F+ + L ++ I +SQ Sbjct 522 -LLKNIDLFVKR-----RADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQ 575 Query 576 YSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW----------LTNIFGTVYEKL 624 +S + D + L + + V YI V +L +Q+ + N F T+ + Sbjct 576 FSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDAS 635 Query 625 KPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNK 684 P WL + G+ F+ + A I AK + TFFKL+ Sbjct 636 APATGWLLYQLLNGL-----------FVVSQANFNFVALIPDYAKILVNKFYTFFKLL-- 682 Query 685 FLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSREETGLLMPLKA-PKE 738 L ++ LK +N +G F S GL G ++P A ++ Sbjct 683 -LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI---------PGFVLPCNAQEQQ 732 Query 739 IIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTPVCINGLMLLEIKDT 796 I F EG + E V+++ ++ ++ S E + P +CI M + Sbjct 733 IYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGD 785 Query 797 EKYCALAPNMMV-TNNTFTLKGGAPTKVTFGDDTVI-EVQGYKSVNITFELDERIDKVLN 854 + + + + + + A KV F + V+ E+ +V + F+LD D +L Sbjct 786 KFFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILG 845 Query 855 EKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDES 911 + CS + VE G V++F VV DA+ L + + + L++ + YLFDE+ Sbjct 846 KVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEA 905 Query 912 GEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQ 970 G+ +AS MYC+F D ED + E+ + + ++D + + Sbjct 906 GDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDED----VVTGDNDDEDVV 961 Query 971 PEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSG 1030 + +ED + D+ G D++ + V T + + Sbjct 962 TGDNDDEDVVTGDNDDEDVVT-GDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDV 1020 Query 1031 YLKLTDNVYIKNADIVEE 1048 D+ + D +E Sbjct 1021 VTGDNDDEDVVTGDNDDE 1038 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 17/254 (7%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 1092 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 1149 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 1150 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPK 1208 SAGIF SL + V V L +K +D + + K + ++ Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVG 1507 Query 1209 EEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDI------NGN 1262 +K K + C ++ ++E L ++ L D+ Sbjct 1508 RVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMT 1559 Query 1263 LHPDSATLVSDIDI 1276 P L++ D+ Sbjct 1560 SLPKDWRLINKFDV 1573 Score = 56.7 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 21/197 (11%) Query 1600 DGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYP 1659 D D + + + ++ Y L V D ++S + + Y Sbjct 1064 DNDDQIVVTGDDVDDIESVYDFDTYKALLV-------FNDVYNDALFVSYGSSVETETYF 1116 Query 1660 QVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCN 1719 +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1117 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1176 Query 1720 KTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 1777 K + G V + + ++ N C CG L G++AV + G + Sbjct 1177 KAIVLPQGGYVADFAYWFLNQFDI---NAYANWCCLKCGF-SFDLNGLDAVFFYGDI--- 1229 Query 1778 QFKKGVQIPCTCGKQAT 1794 V C CG T Sbjct 1230 -----VSHVCKCGHNMT 1241 >sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 3506 bits (9090), Expect = 0.0, Method: Composition-based stats. Identities = 1066/2942 (36%), Positives = 1601/2942 (54%), Gaps = 121/2942 (4%) Query 1512 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 1564 KDW + G++ +K + + DG T + + LL+ Sbjct 1543 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1599 Query 1565 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 1624 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1600 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1658 Query 1625 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 1684 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1659 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1717 Query 1685 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 1744 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1718 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1777 Query 1745 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 1804 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1778 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1835 Query 1805 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1864 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1865 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1921 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1952 Query 1922 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1953 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2010 Query 1981 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 2038 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2011 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2054 Query 2039 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 2097 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2055 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2114 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 2154 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2115 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2170 Query 2155 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 2214 R + ++ + F + L FT T IA ++ L+ + Sbjct 2171 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIF----YTTEIASKFTFNLFCLALKNA 2224 Query 2215 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 2258 F + F K + WF L ++V I+ + + + G Sbjct 2225 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2284 Query 2259 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 2316 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2285 LVTICDFYSKLGVGFTS----HFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2340 Query 2317 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQM 2374 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2341 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2400 Query 2375 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 2434 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2401 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2460 Query 2435 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 2494 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2461 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2520 Query 2495 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 2554 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2521 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2578 Query 2555 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 2614 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2579 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVN 2638 Query 2615 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 2673 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2639 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2698 Query 2674 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 2733 + TY K +N+ DLG I A+H+ VAK NI+ IW + F L+ L+ +++ A Sbjct 2699 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKAC 2758 Query 2734 KKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPV 2793 K L KLT V ++TT +LKGG +++N L L ++L+ + + + P Sbjct 2759 VKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALLPT 2815 Query 2794 HVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKAC 2851 + + K +K ID GV RDI+ D CFANK FD W+ G Y N C Sbjct 2816 YSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNSMDC 2875 Query 2852 PLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATS 2911 P++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF S Sbjct 2876 PIVVAVMDEDIGSTMFNVPTKVLRY-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYAS 2934 Query 2912 ACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLE 2970 CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ E Sbjct 2935 GCVLSSLCTMFKRGDGTPHPYCYTDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISE 2994 Query 2971 GSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNM 3030 G VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 2995 GIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDFFDLFYQF 3054 Query 3031 FTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFT 3090 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ ++F Sbjct 3055 FSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFL 3114 Query 3091 VLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICIST 3150 +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ + Sbjct 3115 MLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIA 3174 Query 3151 KHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLAL 3210 H W FS R++ N S STFEE +L TF++ K+ Y +L++ V YNRYL+L Sbjct 3175 NHVLWLFS--YCRKIGVNVCSDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRYLSL 3230 Query 3211 YNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKM 3269 YNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG KM Sbjct 3231 YNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKM 3290 Query 3270 AFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNF 3329 P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC S +M P+Y LL R + +F Sbjct 3291 VSPTSKIEPCLVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDF 3350 Query 3330 LVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3389 + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G + Sbjct 3351 TIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAF 3410 Query 3390 QCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 3449 MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ Sbjct 3411 HVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFNGNFYGPYR 3470 Query 3450 DRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3509 D Q Q D TVNV+AWLYAA++N WF+ ++ DFN+ AM + + D Sbjct 3471 DAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADL 3530 Query 3510 VDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ 3569 V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Q Sbjct 3531 V--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKLQ 3587 Query 3570 SAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFV 3629 S KR IK T +W+L++ ++ +W++F ++ + + + ++ +F M+ V Sbjct 3588 SKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTH-MIGVTLCVLCFVSFMMLLV 3646 Query 3630 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASA 3688 KHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3647 KHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSHFVPAVNFTYVYEVFYGCIL 3706 Query 3689 VVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVV 3748 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3707 CVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYTWTT 3764 Query 3749 TTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTL 3808 + +A+ IV + +F ++ I+L Y F+GY +CY+G F LLN FR+ + Sbjct 3765 ILSLAIAK-IVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPM 3823 Query 3809 GVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCT 3868 GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++DVKC Sbjct 3824 GVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCA 3883 Query 3869 SVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD-- 3926 +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL S AVD Sbjct 3884 NVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFSNPAAVDTK 3943 Query 3927 ----INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLK 3981 I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ +K+L+ Sbjct 3944 CLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLE 4003 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4041 K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLD Sbjct 4004 KACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLD 4063 Query 4042 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQV 4101 N ALN+I++NA GCVPL+ IP A L ++IPD + D TYA ++W IQ V Sbjct 4064 NQALNSILDNAVKGCVPLSAIPALAANTLTIIIPDKQVFDKVVDNVYVTYAGSVWHIQTV 4123 Query 4102 VDADSKIVQLSEISMDNSPNLAWPLIVTALRANSA--VKLQNNELSPVALRQMSCAAGTT 4159 DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ +G+ Sbjct 4124 QDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSD 4179 Query 4160 QTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDT 4219 YYN GR V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4180 INCNIPTQ--CYYNNVSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELDPPCKFSIQD 4236 Query 4220 PKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKA 4279 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD K Sbjct 4237 VKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKT 4296 Query 4280 YKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNP 4339 Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++HP+ Sbjct 4297 YLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDV 4356 Query 4340 KGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSF 4399 G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC +QS D +F Sbjct 4357 DGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SSVAVQSKDL-NF 4413 Query 4400 LN 4401 LN Sbjct 4414 LN 4415 Score = 446 bits (1148), Expect = 1e-123, Method: Composition-based stats. Identities = 203/1117 (18%), Positives = 379/1117 (34%), Gaps = 202/1117 (18%) Query 13 HVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIK 72 HVQ +L +RD+ V + + V + +K GT L++ L + YV Sbjct 71 HVQSNL----IRDIFVH---EDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGL 123 Query 73 RSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKN 126 +T +V+ L +G G +VP G +P K + ++ Sbjct 124 FRSYKTK--RYVVHHLSMTTSTTNFGED--FFGWIVPF-GFMPSYVHKWFQFCRLYIEES 178 Query 127 GNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYV 186 + D E+ +P + + L+R+ G +V Sbjct 179 DLIISNFKFDDYDFSVEAAYAEVHAEPKGKYSQK---------AYALLRQYRGIKPVLFV 229 Query 187 DNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSE 246 D C G +C++ +L + + + +AW+ R Sbjct 230 DQYGCDYSGKLADCLQAY------GHYSLQDMRQKQSVW---LANCDFDIVVAWHVVRDS 280 Query 247 K-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGF 296 + LQT I K D +G+ P + ++I+ + P + K Sbjct 281 RFVMRLQTIATICGIKYVAQPTEDVVDGDVVIREPVHLLSADAIVLKL-PSLMKVMTHMD 339 Query 297 MGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTKE- 352 I+S+Y V +C + + C D+C W +G+ + C T + E Sbjct 340 DFSIKSIYNV-DLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEV 398 Query 353 GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFS 412 A + G +P+N V+ + + G FG C++ Sbjct 399 KAQSSGVIPENPVL-----------------FTNSTDTVNPDSFNLYGYSVTPFGSCIY- 440 Query 413 YVGCHNKCAYWVPRASANIGC----NHTGVVGEGSEGLNDNLL-EILQKEKVNINIVGDF 467 + W+P +++ ++GVVG S L+ L + V G+ Sbjct 441 WSPRPG---LWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQC-KCGNL 496 Query 468 KLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQK 527 + N + G++ +Q++ + G++ + Sbjct 497 EQNH-------------------ILGVNNSWCRQLLLNRGDYNM---------------- 521 Query 528 SILSPLYAFASEAARVVRSIFSRTLETAQNSVRV------------LQKAAITILDGISQ 575 +L + F R+ F+ + L ++ I +SQ Sbjct 522 -LLKNIDLFVKR-----RADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQ 575 Query 576 YSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW----------LTNIFGTVYEKL 624 +S + D + L + + V YI V +L +Q+ + N F T+ + Sbjct 576 FSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDAS 635 Query 625 KPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNK 684 P WL + G F+ + A I AK + TFFKL+ Sbjct 636 APATGWLLYQLLNGF-----------FVVSQANLNFVALIPDYAKILVNKFYTFFKLL-- 682 Query 685 FLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSREETGLLMPLKA-PKE 738 L ++ LK +N +G F S GL G ++P A ++ Sbjct 683 -LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI---------PGFVLPCNAQEQQ 732 Query 739 IIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTPVCINGLMLLEIKDT 796 I F EG + E V+++ ++ ++ S E + P +CI M + Sbjct 733 IYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGD 785 Query 797 EKYCALAPNMMV-TNNTFTLKGGAPTKVTFGDDTVI-EVQGYKSVNITFELDERIDKVLN 854 + + + + + + A KV F + V+ E+ +V + F+LD D +L Sbjct 786 KFFPIVMNDKNICLLDHAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILG 845 Query 855 EKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDES 911 + CS + VE G V++F VV DA+ L E + + L++ + YLFDE+ Sbjct 846 KVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEA 905 Query 912 GEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGAT----- 965 G+ +AS MYC+F D ED + E+ + + ++D + Sbjct 906 GDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDN 965 Query 966 -SAALQPEEEQEEDWL---DDDSQQTVGQQD------GSEDNQTTTIQTIVEVQPQLEME 1015 + + +ED + +DD G D G D++ + Sbjct 966 DDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDN 1025 Query 1016 LTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 1052 V T + N D+ + D V++ + + Sbjct 1026 NDEDVVTGDNNDEESVTGDNDDQIVVTGDDVDDIESI 1062 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 17/254 (7%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 1092 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 1149 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 1150 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPK 1208 SAGIF SL + V V L +K +D + + K + ++ Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVG 1487 Query 1209 EEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDI------NGN 1262 +K K + C ++ ++E L ++ L D+ Sbjct 1488 RVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMT 1539 Query 1263 LHPDSATLVSDIDI 1276 P L++ D+ Sbjct 1540 SLPKDWRLINKFDV 1553 Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 42/201 (21%), Positives = 73/201 (36%), Gaps = 21/201 (10%) Query 1596 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKK 1655 D D + + + ++ Y L V D ++S + + Sbjct 1040 SVTGDNDDQIVVTGDDVDDIESIYDFDTYKALLV-------FNDVYNDALFVSYGSSVET 1092 Query 1656 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 1715 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1093 ETYFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLL 1152 Query 1716 AYCNKTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGT 1773 K + G V + + ++ N C CG L G++AV + G Sbjct 1153 TTIPKAIVLPQGGYVADFAYWFLNQFDI---NAYANWCCLKCGF-SFDLNGLDAVFFYGD 1208 Query 1774 LSYEQFKKGVQIPCTCGKQAT 1794 + V C CG T Sbjct 1209 I--------VSHVCKCGHNMT 1221 >sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1 Length=4421 Score = 3505 bits (9088), Expect = 0.0, Method: Composition-based stats. Identities = 1068/2946 (36%), Positives = 1603/2946 (54%), Gaps = 121/2946 (4%) Query 1512 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 1564 KDW + G++ +K + + DG T + + LL+ Sbjct 1543 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1599 Query 1565 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 1624 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1600 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1658 Query 1625 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 1684 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1659 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1717 Query 1685 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 1744 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1718 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1777 Query 1745 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 1804 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1778 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1835 Query 1805 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1864 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1865 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1921 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 1952 Query 1922 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 1953 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2010 Query 1981 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 2038 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2011 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2054 Query 2039 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 2097 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2055 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2114 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 2154 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2115 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2170 Query 2155 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 2214 R + ++ + F + L FT T IA ++ L+ + Sbjct 2171 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIF----YTTEIASKFTFNLFCLALKNA 2224 Query 2215 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 2258 F + F K + WF L ++V I+ + + + G Sbjct 2225 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2284 Query 2259 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 2316 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2285 LVTICDFYSKLGVGFTS----HFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2340 Query 2317 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQM 2374 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2341 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2400 Query 2375 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 2434 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2401 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2460 Query 2435 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 2494 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2461 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2520 Query 2495 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 2554 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2521 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2578 Query 2555 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 2614 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2579 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVN 2638 Query 2615 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 2673 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2639 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2698 Query 2674 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 2733 + TY K +N+ DLG I A+H+ VAK NI+ IW + F L+ L+ +++ A Sbjct 2699 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKAC 2758 Query 2734 KKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPV 2793 K L KLT V ++TT +LKGG +++N L L ++L+ + + + P Sbjct 2759 VKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALLPT 2815 Query 2794 HVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKAC 2851 + + K +K ID GV RDI+ D CFANK FD W+ G Y N C Sbjct 2816 YSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNSMDC 2875 Query 2852 PLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATS 2911 P++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF S Sbjct 2876 PIVVAVMDEDIGSTMFNVPTKVLRY-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYAS 2934 Query 2912 ACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLE 2970 CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ E Sbjct 2935 GCVLSSLCTMFKRGDGTPHPYCYTDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISE 2994 Query 2971 GSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNM 3030 G VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 2995 GIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDFFDLFYQF 3054 Query 3031 FTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFT 3090 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ ++F Sbjct 3055 FSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFL 3114 Query 3091 VLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICIST 3150 +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ + Sbjct 3115 MLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIA 3174 Query 3151 KHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLAL 3210 H W FS R++ N S STFEE +L TF++ K+ Y +L++ V YNRYL+L Sbjct 3175 NHVLWLFS--YCRKIGVNVCSDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRYLSL 3230 Query 3211 YNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKM 3269 YNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG KM Sbjct 3231 YNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKM 3290 Query 3270 AFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNF 3329 P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC S +M P+Y LL R + +F Sbjct 3291 VSPTSKIEPCLVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDF 3350 Query 3330 LVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3389 + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G + Sbjct 3351 TIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAF 3410 Query 3390 QCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 3449 MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ Sbjct 3411 HVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFNGNFYGPYR 3470 Query 3450 DRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3509 D Q Q D TVNV+AWLYAA++N WF+ ++ DFN+ AM + + D Sbjct 3471 DAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADL 3530 Query 3510 VDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ 3569 V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Q Sbjct 3531 V--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKLQ 3587 Query 3570 SAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFV 3629 S KR IK T +W+L++ ++ +W++F ++ + + + ++ +F M+ V Sbjct 3588 SKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTH-MIGVTLCVLCFVSFMMLLV 3646 Query 3630 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASA 3688 KHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3647 KHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSHFVPAVNFTYVYEVFYGCIL 3706 Query 3689 VVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVV 3748 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3707 CVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYTWTT 3764 Query 3749 TTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTL 3808 + +A+ IV + +F ++ I+L Y F+GY +CY+G F LLN FR+ + Sbjct 3765 ILSLAIAK-IVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPM 3823 Query 3809 GVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCT 3868 GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++DVKC Sbjct 3824 GVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCA 3883 Query 3869 SVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD-- 3926 +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL S AVD Sbjct 3884 NVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFSNPAAVDTK 3943 Query 3927 ----INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLK 3981 I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ +K+L+ Sbjct 3944 CLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLE 4003 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4041 K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLD Sbjct 4004 KACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLD 4063 Query 4042 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQV 4101 N ALN+I++NA GCVPL+ IP A L ++IPD + D TYA ++W IQ V Sbjct 4064 NQALNSILDNAVKGCVPLSAIPALAANTLTIIIPDKQVFDKVVDNVYVTYAGSVWHIQTV 4123 Query 4102 VDADSKIVQLSEISMDNSPNLAWPLIVTALRANSA--VKLQNNELSPVALRQMSCAAGTT 4159 DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ +G+ Sbjct 4124 QDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSD 4179 Query 4160 QTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDT 4219 YYN GR V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4180 INCNIPTQ--CYYNNVSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELDPPCKFSIQD 4236 Query 4220 PKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKA 4279 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD K Sbjct 4237 VKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKT 4296 Query 4280 YKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNP 4339 Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++HP+ Sbjct 4297 YLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDV 4356 Query 4340 KGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSF 4399 G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC +QS D +F Sbjct 4357 DGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SSVAVQSKDL-NF 4413 Query 4400 LNGFAV 4405 LNG V Sbjct 4414 LNGLGV 4419 Score = 445 bits (1145), Expect = 2e-123, Method: Composition-based stats. Identities = 203/1117 (18%), Positives = 379/1117 (34%), Gaps = 202/1117 (18%) Query 13 HVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIK 72 HVQ +L +RD+ V + + V + +K GT L++ L + YV Sbjct 71 HVQSNL----IRDIFVH---EDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGL 123 Query 73 RSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKN 126 +T +V+ L +G G +VP G +P K + ++ Sbjct 124 FRSYKTK--RYVVHHLSMTTSTTNFGED--FFGWIVPF-GFMPSYVHKWFQFCRLYIEES 178 Query 127 GNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYV 186 + D E+ +P + + L+R+ G +V Sbjct 179 DLIISNFKFDDYDFSVEAAYAEVHAEPKGKYSQK---------AYALLRQYRGIKPVLFV 229 Query 187 DNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSE 246 D C G +C++ +L + + + +AW+ R Sbjct 230 DQYGCDYSGKLADCLQAY------GHYSLQDMRQKQSVW---LANCDFDIVVAWHVVRDS 280 Query 247 K-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGF 296 + LQT I K D +G+ P + ++I+ + P + K Sbjct 281 RFVMRLQTIATICGIKYVAQPTEDVVDGDVVIREPVHLLSADAIVLKL-PSLMKVMTHMD 339 Query 297 MGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTKE- 352 I+S+Y V +C + + C D+C W +G+ + C T + E Sbjct 340 DFSIKSIYNV-DLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEV 398 Query 353 GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFS 412 A + G +P+N V+ + + G FG C++ Sbjct 399 KAQSSGVIPENPVL-----------------FTNSTDTVNPDSFNLYGYSVTPFGSCIY- 440 Query 413 YVGCHNKCAYWVPRASANIGC----NHTGVVGEGSEGLNDNLL-EILQKEKVNINIVGDF 467 + W+P +++ ++GVVG S L+ L + V G+ Sbjct 441 WSPRPG---LWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQC-KCGNL 496 Query 468 KLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQK 527 + N + G++ +Q++ + G++ + Sbjct 497 EQNH-------------------ILGVNNSWCRQLLLNRGDYNM---------------- 521 Query 528 SILSPLYAFASEAARVVRSIFSRTLETAQNSVRV------------LQKAAITILDGISQ 575 +L + F R+ F+ + L ++ I +SQ Sbjct 522 -LLKNIDLFVKR-----RADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQ 575 Query 576 YSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW----------LTNIFGTVYEKL 624 +S + D + L + + V YI V +L +Q+ + N F T+ + Sbjct 576 FSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDAS 635 Query 625 KPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNK 684 P WL + G F+ + A I AK + TFFKL+ Sbjct 636 APATGWLLYQLLNGF-----------FVVSQANLNFVALIPDYAKILVNKFYTFFKLL-- 682 Query 685 FLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSREETGLLMPLKA-PKE 738 L ++ LK +N +G F S GL G ++P A ++ Sbjct 683 -LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI---------PGFVLPCNAQEQQ 732 Query 739 IIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTPVCINGLMLLEIKDT 796 I F EG + E V+++ ++ ++ S E + P +CI M + Sbjct 733 IYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGD 785 Query 797 EKYCALAPNMMV-TNNTFTLKGGAPTKVTFGDDTVI-EVQGYKSVNITFELDERIDKVLN 854 + + + + + + A KV F + V+ E+ +V + F+LD D +L Sbjct 786 KFFPIVMNDKNICLLDHAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILG 845 Query 855 EKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDES 911 + CS + VE G V++F VV DA+ L E + + L++ + YLFDE+ Sbjct 846 KVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEA 905 Query 912 GEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGAT----- 965 G+ +AS MYC+F D ED + E+ + + ++D + Sbjct 906 GDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDN 965 Query 966 -SAALQPEEEQEEDWL---DDDSQQTVGQQD------GSEDNQTTTIQTIVEVQPQLEME 1015 + + +ED + +DD G D G D++ + Sbjct 966 DDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDN 1025 Query 1016 LTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 1052 V T + N D+ + D V++ + + Sbjct 1026 NDEDVVTGDNNDEESVTGDNDDQIVVTGDDVDDIESI 1062 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 17/254 (7%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 1092 ATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHEVLLAPLL 1149 + G +VG V +G L K L++VGP+ + + LL AY++ N ++ L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 1150 SAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPK 1208 SAGIF SL + V V L +K +D + + K + ++ Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALAVRLTANVG 1487 Query 1209 EEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDI------NGN 1262 +K K + C ++ ++E L ++ L D+ Sbjct 1488 RVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNNDVRDYLLSKMT 1539 Query 1263 LHPDSATLVSDIDI 1276 P L++ D+ Sbjct 1540 SLPKDWRLINKFDV 1553 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 42/201 (21%), Positives = 73/201 (36%), Gaps = 21/201 (10%) Query 1596 PTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKK 1655 D D + + + ++ Y L V D ++S + + Sbjct 1040 SVTGDNDDQIVVTGDDVDDIESIYDFDTYKALLV-------FNDVYNDALFVSYGSSVET 1092 Query 1656 WKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALIL 1715 Y +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1093 ETYFKVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLL 1152 Query 1716 AYCNKTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGT 1773 K + G V + + ++ N C CG L G++AV + G Sbjct 1153 TTIPKAIVLPQGGYVADFAYWFLNQFDI---NAYANWCCLKCGF-SFDLNGLDAVFFYGD 1208 Query 1774 LSYEQFKKGVQIPCTCGKQAT 1794 + V C CG T Sbjct 1209 I--------VSHVCKCGHNMT 1221 >sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 3503 bits (9083), Expect = 0.0, Method: Composition-based stats. Identities = 1066/2918 (37%), Positives = 1613/2918 (55%), Gaps = 117/2918 (4%) Query 1531 GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSM 1588 G + + G T +K L + + + TVD +N + V + Sbjct 1530 GGIDICSQDKVFGYVQQGIFNKATVAQIKALF----LDKVDILLTVDGVNFTNRFVPVGE 1585 Query 1589 TYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMS 1648 ++G+ G + DG +VTK K +++GK F+ N + ++A D L Y + Sbjct 1586 SFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQFDNLSSEDLKAVRSSFNFDQKELLAYYN 1645 Query 1649 ALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAA 1708 L + KW+ + K A+NNC++ + L LQ + L F Q+A+ R+G A Sbjct 1646 MLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQSLHLTFKIVQWQEAWLEFRSGRPA 1705 Query 1709 NFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAV 1768 F AL+LA G+ D R+ + +F +L + CK CG +Q G++AV Sbjct 1706 RFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGAICDFEIACK-CGVKQEQRTGLDAV 1764 Query 1769 MYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYT 1828 M+ GTLS E + G + C+CGK+ + V+ + PF++ S PA +L G + A+ + Sbjct 1765 MHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPFLICSNTPASVKLPKGVGS-ANIFI 1822 Query 1829 GNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKEN-SYTTTIKPVTYKLDGV 1887 G+ GHY H+ +++ D + + K ++ G ++D Y +N T TY LD V Sbjct 1823 GD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLSDCLYLKNLKQTFKSVLTTYYLDDV 1881 Query 1888 VCTEIDPKLDNYYKKDNSYFTEQPIDL-VPNQPYPNASFDNFKFVCDNIKFADDLNQLTG 1946 E P L YY Y+T++ I + + NFK + + D LN G Sbjct 1882 KKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHTV--CDSLNSKLG 1939 Query 1947 YKKPA-SRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVW--HVNNATNKATY 2003 + E K+T +P GDVV + Y +++G KP++W H + N TY Sbjct 1940 FDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYERGCITFGKPVIWLSHEKASLNSLTY 1999 Query 2004 KPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE 2063 ++ + N FDVLK +D + + K E I L Sbjct 2000 ----------FNRPLLVDDNKFDVLKVDDVDDSGDSSESGAK-------ETKEINIIKLS 2042 Query 2064 CNVKTTEVVGDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTL- 2122 K +V +I+ + K + + D+ ++ ++ N LSR + + T+ Sbjct 2043 GVKKPFKVEDSVIVNDDTSETKYVKSLSIVDVYDMWLTGCKYVVRTANALSRAVNVPTIR 2102 Query 2123 --ATHGLAAVNSVPWDTI-ANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQL 2179 G+ V S+P D + KP +N V T C N++ + F LL Sbjct 2103 KFIKFGMTLV-SIPIDLLNLREIKPAVN--VVKAVRNKTSA----CFNFIKWLFVLLFGW 2155 Query 2180 CTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINII--IWFLLLS 2237 + + K T IA + + +F K ++ II I+ L + Sbjct 2156 IKIS----ADNKVIYTTEIASKLTCKLVALAFKNAFLTFKWSMVARGACIIATIFLLWFN 2211 Query 2238 VCLGSLIYSTAALG--------------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT 2283 ++I+S L + + + + C Y + YC Sbjct 2212 FIYANVIFSDFYLPKIGFLPTFVGKIAQWIKNTFSLVTICDLYSIQDVGF----KNQYCN 2267 Query 2284 GSIPCSVCLSGLDSLDTYPSLETIQITISS--FKWDLTAFGLVAEWFLAYILFTRFFYVL 2341 GSI C CL+G D LD Y +++ +Q F +V E ++Y L+T +FY L Sbjct 2268 GSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGVLKIVIELIVSYALYTAWFYPL 2327 Query 2342 GLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 +Q+ ++ F+ ++ W L++ L M P +R YI ASF ++ + H Sbjct 2328 FALISIQILTTWLPELFMLSTLHWSFRLLVALANMLPAHVFMRFYIIIASFIKLFSLFKH 2387 Query 2400 VVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFC 2459 V GC+ S C+ CYKRNR+ RV+C+TIV G+ R + V ANGG GFC H WNC++CD++ Sbjct 2388 VAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTGFCSKHQWNCIDCDSYK 2447 Query 2460 AGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLS 2519 G+TFI+ E A DLS + KRPI PTD + + V V S+ L++D+ GQ+ Y+ + S Sbjct 2448 PGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLFYDRDGQRIYDDVNAS 2507 Query 2520 HFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSD 2579 FV+ NL + K ++V+V + + ++++ +A+V+Y+Q + +PIL++D+ L++ Sbjct 2508 LFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAAVFYAQSLFRPILMVDKNLITT 2565 Query 2580 VGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQ 2639 V MFD YV+TF S F+V + L L+ATA + + + + VL TF+S AR+ Sbjct 2566 ANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHSSIKQGTQIYKVLDTFLSCARK 2625 Query 2640 GF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDCSARH 2698 +DSDV+TK + + + + + +E+T +SCNN + TY K +N+ DLG I SA+H Sbjct 2626 SCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTYLKSDNIVAADLGVLIQNSAKH 2685 Query 2699 INAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKI 2758 + VAK ++ IW+V F S + +++ A K L KLT V+V+TT Sbjct 2686 VQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMANVSVLTTPF 2745 Query 2759 ALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTR 2818 +LKGG + + ++ ++LV + + P + + K YK +D GV R Sbjct 2746 SLKGGAVFSYFVYVCFVLSLVCFI---GLWCLMPTYTVHKSDFQLPVYASYKVLDNGVIR 2802 Query 2819 DIASTDTCFANKHADFDTWFSQRGG--SYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 D++ D CFANK FD W+ G Y+N ACP++ AVI ++ G V +P +LR Sbjct 2803 DVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACPIVVAVIDQDFGSTVFNVPTKVLRY 2862 Query 2877 TNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDT 2936 LHF+ SA G CYTP I Y++F S CVL++ CT+F A G P PYCY Sbjct 2863 -GYHVLHFITHALSADGVQCYTPHSQISYSNFYASGCVLSSACTMFTMADGSPQPYCYTD 2921 Query 2937 NVLEGSVAYESLRPDTRYVLMDG-SIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAG 2995 +++ + Y SL P RY L + I+FP EG VRVV T YCR G CE ++ G Sbjct 2922 GLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREGLVRVVRTRSMSYCRVGLCEEADEG 2981 Query 2996 VCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAI 3055 +C + +G WVLNNDYYRSLPG FCG D +L+ +F L QP+ L ++AS +AG I+A+ Sbjct 2982 ICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAV 3041 Query 3056 VVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFY 3115 +V + YY ++ +RAFG+Y+ VV N +++ ++F +L + VY L VY++ Y Y T Y Sbjct 3042 IVVLVFYYLIKLKRAFGDYTSVVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLY 3101 Query 3116 LTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTF 3175 +++S + H+QW+VM+ ++P W + YI + + H +W FS R++ + S TF Sbjct 3102 FPSEISVIMHLQWLVMYGTIMPLWFCLLYIAVVVSNHAFWVFS--YCRKLGTSVRSDGTF 3159 Query 3176 EEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLA 3235 EE AL TF++ K+ Y KL++ L +NRYL+LYNKY+Y+SG MDT +YREAAC LA Sbjct 3160 EEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLYNKYRYYSGKMDTAAYREAACSQLA 3217 Query 3236 KALNDF-SNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 KA++ F +N+GSDVLYQPP S++++ LQSG KM P+ KVE C+V VT G TLNGLW Sbjct 3218 KAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMVNPTSKVEPCVVSVTYGNMTLNGLW 3277 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 LDD VYCPRHVIC++ DM NP+Y +LL R ++ +F V + L V+ + M+ C+L L V Sbjct 3278 LDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFTVLFDRLSLTVMSYQMRGCMLVLTV 3337 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 N +TPKY F ++PG+TF+VLA YNG P G + MR ++TIKGSFL GSCGSVG+ Sbjct 3338 TLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYV 3397 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 I DCV F YMH +EL TG H GTD G+FYGP+ D Q Q D +VN LAWLYAA Sbjct 3398 IMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPIQDYIQSVNFLAWLYAA 3457 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 ++N WF+ ++ DFN+ A+ + + D V + L++ TG+++ + A++K L Sbjct 3458 ILNNCNWFIQSDKCSVEDFNVWALSNGFSQVKSDLV--IDALASMTGVSLETLLAAIKRL 3515 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 +NG GR I+GS EDE TP DV +Q +G+ QS R KGT W++ + ++ Sbjct 3516 -KNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQSKRTRLFKGTVCWIMASTFLFSCII 3574 Query 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-MV 3653 +W++F ++ N F + + + AM+ VKHKH +L +++ P L T+ Y N +V Sbjct 3575 TAFVKWTMFMYVTTNMF-SITFCALCVISLAMLLVKHKHLYLTMYITPVLFTLLYNNYLV 3633 Query 3654 YMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVL-LILMTARTVYDDGARRVWTLM 3712 ++ + WL S+ + D V+Y +++ ++ +T R++ D + + Sbjct 3634 VYKHTFRGYVYAWLSYYVPSVE-YTYTDEVIYGMLLLVGMVFVTLRSINHDLFSFIMFVG 3692 Query 3713 NVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFIT 3772 ++++ Y G+ L++ I + ++ S+ Y+ M +A+ ++ V ++F Sbjct 3693 RLISVFSLWYKGSNLEEEILL--MLASLFGTYTWTTVLSMAVAK-VIAKWVAVNVLYFTD 3749 Query 3773 GNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK 3832 ++ ++L Y F+GY +CY+GLF L+N FR+ LGVY+Y +S QE RYMN+ GL PPK Sbjct 3750 IPQIKIVLLCYLFIGYIISCYWGLFSLMNSLFRMPLGVYNYKISVQELRYMNANGLRPPK 3809 Query 3833 NSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCV 3892 NS +A LN KLLG+GG P I+V+ QSK++DVKC +VVLL+ LQ L V S+SKLW C Sbjct 3810 NSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVKCANVVLLNCLQHLHVASNSKLWHYCS 3869 Query 3893 QLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIAS 3946 LHN+IL D + AFEK+ LL VL + AVD I ++C++ + LQA+ S Sbjct 3870 TLHNEILATSDLSVAFEKLAQLLIVLFANPAAVDSKCLTSIEEVCDDYAKDNTVLQALQS 3929 Query 3947 EFSSLPSYAAFATAQEAYEQAVANGDS-EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMA 4005 EF ++ S+ + A++ ++A +G + + LK+L+K+ N+AKS ++RD A+ +KLE+MA Sbjct 3930 EFVNMASFVEYEVAKKNLDEARFSGSANQQQLKQLEKACNIAKSAYERDRAVAKKLERMA 3989 Query 4006 DQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLT 4065 D A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP Sbjct 3990 DLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSL 4049 Query 4066 TAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWP 4125 A L +++PD + Y D TYA +W+IQ + D+D QL+EIS D + WP Sbjct 4050 AANTLNIIVPDKSVYDQIVDNIYVTYAGNVWQIQTIQDSDGTNKQLNEISDDCN----WP 4105 Query 4126 LIVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLA 4183 L++ A R N SA LQNNEL P L+ +G QT T YYN + G+ V A Sbjct 4106 LVIIANRYNEVSATVLQNNELMPAKLKIQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYA 4163 Query 4184 LLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4243 +LSD+ LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+ Sbjct 4164 ILSDVDGLKYTKILKDDGN-FVVLELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVV 4222 Query 4244 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTG 4303 G++++TVRLQAG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H G Sbjct 4223 GTISSTVRLQAGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAG 4282 Query 4304 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4363 TG AITV P+A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4283 TGMAITVKPDATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSY 4341 Query 4364 TLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 L + VC VCG W+ CSC + +QS D +FLN Sbjct 4342 VLTHDVCRVCGFWRDGSCSCVST-DTTVQSKDT-NFLN 4377 Score = 599 bits (1544), Expect = 8e-170, Method: Composition-based stats. Identities = 226/1108 (20%), Positives = 401/1108 (36%), Gaps = 188/1108 (17%) Query 58 KGVLPQLEQPYVFIKRSDA---RTAPHGHVMVEL-VAELEGIQYGRSGETLGVLVPHVGE 113 +G P+ +F +RS R + HV +L + + G+ G +G+ +G ++P + Sbjct 119 RGCNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLG-AGQFVGWVIP-LAF 176 Query 114 IPVAYRKVL------LRKNGNKGA-------GGHSYGADLKSFDLGDELGTDPYEDFQEN 160 +PV RK + LRK G KGA GG + D K D D++ +P F Sbjct 177 MPVQSRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFS-- 234 Query 161 WNTKHSSGVTRELMRELNGGAYTRYVDNNFCGPDGYP---LECIKDLLARAGKASC-TLS 216 L+R G YVD C G LE D + KA T S Sbjct 235 -------KKAYALIRGYRGVKPLLYVDQYGCDYTGSLADGLEAYADKTLQEMKALFPTWS 287 Query 217 EQLDFIDTKRGVYCCREHEHEIAWYTERSEK-SYELQTPFEIKLAKKF-----DTFNGEC 270 ++L F + +AW+ R + LQ+ I D +G Sbjct 288 QELPF-------------DVIVAWHVVRDPRYVMRLQSAATICSVAYVANPTEDLCDGSV 334 Query 271 ----PNFVFPLNSIIKTIQPRVEKKKLDGFMG--------RIRSVYPVASPNECNQMCLS 318 P V+ +SII + + L M + + Y VA +C + Sbjct 335 VIKEPVHVYADDSII------LRQYNLFDIMSHFYMEADTVVNAFYGVA-LKDCGFVMQF 387 Query 319 TLMKC--DHCGETSWQTGDFVKATCEF-CGTENLTKEG-ATTCGYLPQNAVVKIYCPACH 374 + C D C W G+ + CG + A + G LP N V+ A + Sbjct 388 GYIDCEQDSCDFKGWIPGNMIDGFACTTCGHVYEVGDLIAQSSGVLPVNPVLHTKSAAGY 447 Query 375 NSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGC- 433 G + S Y G + FGGCV+ + N W+P +++ Sbjct 448 GG-FGCKDSFTLY------------GQTVVYFGGCVY-WSPARN---IWIPILKSSVKSY 490 Query 434 ---NHTGVVGEGSEGLNDNL-LEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVE 489 +TGV+G + NL + L + V + G+ E + + S Sbjct 491 DSLVYTGVLGCKAIVKETNLICKALYLDYVQ-HKCGNLHQRELLGV---------SDVWH 540 Query 490 TVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNI---GEQKSILSPLY-----------A 535 ++ +K ++E+ F + + K + + G +L L A Sbjct 541 KQLLINRGVYKPLLENIDYFNMRRAKFSLETFTVCADGFMPFLLDDLVPRAYYLAVSGQA 600 Query 536 FASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNL 595 F A ++ ++ S++ E S+ L AAI L+ +++D SD T+ Sbjct 601 FCDYADKLCHAVVSKSKELLDVSLDSL-GAAIHYLNS------KIVDLAQHFSDFGTS-- 651 Query 596 VVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTC 655 +V + T+ L VL + + F+++ I ++ S Sbjct 652 -----FVSKIVHFFKTFTTSTALAFAWVLFHVLHGAYIVVESDIYFVKN---IPRYAS-- 701 Query 656 ACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKG 715 V + AK + +S++ F + I + G K+ + G + HS Sbjct 702 ---AVAQAFQSVAKVVLDSLRVTFIDGLSCFKIGRRRICLSGRKIYEVERG---LLHSSQ 755 Query 716 LYRKCVKSREETGLLMP---LKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSE 772 L + L MP KA ++ I+L+G + V + T L P Sbjct 756 L------PLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSLTPC-----G 804 Query 773 AVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDD-TVI 831 E P V +CI + + + Y + + + + A +VTF + TV Sbjct 805 YSEPPKVADKICIVDNVYMAKAGDKYYPVVVDDHVGLLDQAWRVPCAGRRVTFKEQPTVK 864 Query 832 EVQGY-KSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSEL- 889 E+ K + + +ELD + +LN C + V+ ++ EF VV DA+ + L P EL Sbjct 865 EIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPCKELE 924 Query 890 --LTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQY 947 + L + +LFDE+GE A +YC+F P++D+ + + EE + + Sbjct 925 GVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLEESDVEEDDVEGEE 984 Query 948 EYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVE 1007 T G+P + + E+ +D ++ + ++D + I + Sbjct 985 TDLTIT-SAGQPCVASEQEESSEVLEDTLDDGPSVETSDSQVEEDVEMSDFVDLESVIQD 1043 Query 1008 VQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIV--------------------- 1046 + T + ++V +N ++++ V Sbjct 1044 YENVCFEFYTTEPEFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYK 1103 Query 1047 EEAKKVKPTVVVN--AANVYLKHGGGVA 1072 ++ ++ +VN AN+ L GG VA Sbjct 1104 QQYSQLFVDTLVNKIPANIVLPQGGYVA 1131 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 59/251 (24%), Positives = 109/251 (43%), Gaps = 17/251 (7%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 +T NV DI++ +K VK VVVN AN ++ HGGGVA A+ A E+ + + Sbjct 1272 CITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVK 1331 Query 1093 TNGPLKVGGSCVLSGHNLAKHCLHVVGPNVN--KGEDIQLLKSAYENFNQHEVLLAPLLS 1150 + G G V +G L K L+VVGP+ + LL+ Y++FN ++ ++ L+S Sbjct 1332 SKGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLIS 1391 Query 1151 AGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVEQKIAEIPKE 1209 AGIF SL + T + V L ++ +D + ++ K++ +++ Sbjct 1392 AGIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLISKCQITAVEGTKKLAARLSFNVGR 1451 Query 1210 EVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL------YIDINGNL 1263 + +K + L++ L ++ L ++ N ++ Sbjct 1452 SIVYETDANKLILINDVA--------FVSTFNVLQDVLSLRHDIALDDDARTFVQSNVDV 1503 Query 1264 HPDSATLVSDI 1274 P+ +V+ Sbjct 1504 LPEGWRVVNKF 1514 Score = 51.7 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 41/196 (21%), Positives = 74/196 (38%), Gaps = 22/196 (11%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 ++ +V GL K NNC+L + L +Q++ +F LQD + + + F ++ Sbjct 1057 EFVKVLGLYVPKATRNNCWLRSVLAVMQKLPCQFKDKNLQDLWVLYKQQYSQLFVDTLVN 1116 Query 1717 Y--CNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 N + + G V + + L + V C C LKG++A+ + G + Sbjct 1117 KIPANIVLPQGGYVADFAYWFL---TLCDWQCVAYWKCIKCDL-ALKLKGLDAMFFYGDV 1172 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCG 1834 V C CG+ L+ + PF A + LK F Y+ Sbjct 1173 --------VSHICKCGESMV--LIDVDVPFT------AHFALKDKLFCAFITKRIVYKAA 1216 Query 1835 HYKHITSKETLYCIDG 1850 + ++ +DG Sbjct 1217 CVVDVNDSHSMAVVDG 1232 >sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1 Length=4471 Score = 3503 bits (9082), Expect = 0.0, Method: Composition-based stats. Identities = 1070/2946 (36%), Positives = 1605/2946 (54%), Gaps = 121/2946 (4%) Query 1512 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 1564 KDW + G++ +K + + DG T + + LL+ Sbjct 1593 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1649 Query 1565 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 1624 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1650 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1708 Query 1625 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 1684 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1709 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1767 Query 1685 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 1744 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1768 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1827 Query 1745 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 1804 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1828 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1885 Query 1805 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1864 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1865 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1921 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 2002 Query 1922 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 2003 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2060 Query 1981 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 2038 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2061 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2104 Query 2039 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 2097 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2105 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2164 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 2154 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2165 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2220 Query 2155 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 2214 R + ++ + F + L FT T IA ++ L+ + Sbjct 2221 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIF----YTTEIASKFTFNLFCLALKNA 2274 Query 2215 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 2258 F + F K + WF L ++V I+ + + + G Sbjct 2275 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2334 Query 2259 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 2316 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2335 LVTICDFYSKLGVGFTS----HFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2390 Query 2317 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQM 2374 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2391 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2450 Query 2375 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 2434 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2451 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2510 Query 2435 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 2494 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2511 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2570 Query 2495 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 2554 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2571 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2628 Query 2555 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 2614 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2629 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2688 Query 2615 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 2673 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2689 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2748 Query 2674 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 2733 + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ A Sbjct 2749 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKAC 2808 Query 2734 KKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPV 2793 K L KLT V ++TT +LKGG +++N L L V+L+ + + + P Sbjct 2809 VKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFVSLICFI---LLWALLPT 2865 Query 2794 HVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKAC 2851 + + K +K ID GV RDI+ D CFANK FD W+ G Y N C Sbjct 2866 YSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNSMDC 2925 Query 2852 PLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATS 2911 P++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF S Sbjct 2926 PIVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYAS 2984 Query 2912 ACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLE 2970 CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ E Sbjct 2985 GCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISE 3044 Query 2971 GSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNM 3030 G VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 3045 GIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQF 3104 Query 3031 FTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFT 3090 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ ++F Sbjct 3105 FSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVVVWCINFL 3164 Query 3091 VLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICIST 3150 +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ + Sbjct 3165 MLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIA 3224 Query 3151 KHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLAL 3210 H W FS R++ N S STFEE +L TF++ K+ Y +L++ V YNRYL+L Sbjct 3225 NHVLWLFS--YCRKIGVNVCSDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRYLSL 3280 Query 3211 YNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKM 3269 YNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG KM Sbjct 3281 YNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKM 3340 Query 3270 AFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNF 3329 P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC+S +M P+Y LL R + +F Sbjct 3341 VSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICSSSNMNEPDYSALLCRVTLGDF 3400 Query 3330 LVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3389 + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G + Sbjct 3401 TIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGNVKPGETFTVLAAYNGRPQGAF 3460 Query 3390 QCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 3449 MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ Sbjct 3461 HVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYR 3520 Query 3450 DRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3509 D Q Q D TVNV+AWLYAA++N WF+ + DFN+ AM + + D Sbjct 3521 DAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVKADL 3580 Query 3510 VDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ 3569 V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Q Sbjct 3581 V--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKLQ 3637 Query 3570 SAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFV 3629 S KR IK T +W+L++ ++ +W++F ++ + + + ++ +F M+ V Sbjct 3638 SKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTH-MIGVTLCVLCFVSFMMLLV 3696 Query 3630 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASA 3688 KHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3697 KHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSYFVPAVNFTYVYEVFYGCIL 3756 Query 3689 VVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVV 3748 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3757 CVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYTWTT 3814 Query 3749 TTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTL 3808 + +A+ IV + +F ++ I+L Y F+GY +CY+G F LLN FR+ + Sbjct 3815 ILSLAIAK-IVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPM 3873 Query 3809 GVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCT 3868 GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++DVKC Sbjct 3874 GVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCA 3933 Query 3869 SVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD-- 3926 +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL + AVD Sbjct 3934 NVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDTK 3993 Query 3927 ----INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLK 3981 I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ +K+L+ Sbjct 3994 CLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLE 4053 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4041 K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLD Sbjct 4054 KACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLD 4113 Query 4042 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQV 4101 N ALN+I++NA GCVPL+ IP A L +VIPD + D TYA ++W IQ V Sbjct 4114 NQALNSILDNAVKGCVPLSAIPALAANTLTIVIPDKQVFDKVVDNVYVTYAGSVWHIQTV 4173 Query 4102 VDADSKIVQLSEISMDNSPNLAWPLIVTALRANSA--VKLQNNELSPVALRQMSCAAGTT 4159 DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ +G+ Sbjct 4174 QDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSD 4229 Query 4160 QTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDT 4219 YYN GR V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4230 MNCNIPTQ--CYYNNGSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELDPPCKFSIQD 4286 Query 4220 PKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKA 4279 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD K Sbjct 4287 VKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKT 4346 Query 4280 YKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNP 4339 Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++HP+ Sbjct 4347 YLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDV 4406 Query 4340 KGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSF 4399 G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC +QS D +F Sbjct 4407 DGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SSVAVQSKDL-NF 4463 Query 4400 LNGFAV 4405 LNGF V Sbjct 4464 LNGFGV 4469 Score = 450 bits (1157), Expect = 7e-125, Method: Composition-based stats. Identities = 201/1098 (18%), Positives = 376/1098 (34%), Gaps = 192/1098 (17%) Query 13 HVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIK 72 HVQ +L +RD+ V + + V + +K GT L++ L + YV Sbjct 71 HVQSNL----IRDIFVH---EDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGL 123 Query 73 RSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKN 126 +T +V+ L +G LG +VP G +P K + ++ Sbjct 124 FRSYKTK--RYVVHHLSMTTSTTNFGED--FLGWIVPF-GFMPSYVHKWFQFCRLYIEES 178 Query 127 GNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYV 186 + D D E+ +P + + L+R+ G +V Sbjct 179 DLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQK---------AYALLRQYRGIKPVLFV 229 Query 187 DNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSE 246 D C G +C++ +L + + + +AW+ R Sbjct 230 DQYGCDYSGKLADCLQAY------GHYSLQDMRQKQSVW---LANCDFDIVVAWHVVRDS 280 Query 247 K-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGF 296 + LQT I K D +G+ P + ++I+ + P + K Sbjct 281 RFVMRLQTIATICGIKYVAQPTEDVVDGDVVIREPVHLLSADAIVLKL-PSLMKVMTHMD 339 Query 297 MGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTKE- 352 I+S+Y V +C + + C D+C W +G+ + C T + E Sbjct 340 DFSIKSIYNV-DLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEV 398 Query 353 GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFS 412 A + G +P+N V+ + + G FG C++ Sbjct 399 KAQSSGVIPENPVL-----------------FTNSTDTVNHDSFNLYGYSVTPFGSCIY- 440 Query 413 YVGCHNKCAYWVPRASANIGC----NHTGVVGEGSEGLNDNLL-EILQKEKVNINIVGDF 467 + W+P +++ ++GVVG S L+ L + V G+ Sbjct 441 WSPRPG---LWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQC-KCGNL 496 Query 468 KLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQK 527 + N + G++ +Q++ + G++ + Sbjct 497 EQNH-------------------ILGVNNSWCRQLLLNRGDYNM---------------- 521 Query 528 SILSPLYAFASEAARVVRSIFSRTLETAQNSVRV------------LQKAAITILDGISQ 575 +L + F R+ F+ + L ++ I +SQ Sbjct 522 -LLKNIDLFVKR-----RADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQ 575 Query 576 YSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW----------LTNIFGTVYEKL 624 +S + D + L + + V YI V +L +Q+ + N F T+ + Sbjct 576 FSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDAS 635 Query 625 KPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNK 684 P WL + G+ F+ + A I AK + TFFKL+ Sbjct 636 APATGWLLYQLLNGL-----------FVVSQANFNFVALIPDYAKILVNKFYTFFKLL-- 682 Query 685 FLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSREETGLLMPLKA-PKE 738 L ++ LK +N +G F S GL G ++P A ++ Sbjct 683 -LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI---------PGFVLPCNAQEQQ 732 Query 739 IIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTPVCINGLMLLEIKDT 796 I F EG + E V+++ ++ ++ S E + P +CI M + Sbjct 733 IYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGD 785 Query 797 EKYCALAPNMMV-TNNTFTLKGGAPTKVTFGDDTVI-EVQGYKSVNITFELDERIDKVLN 854 + + + + + + A KV F + V+ E+ +V + F+LD D +L Sbjct 786 KFFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILG 845 Query 855 EKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDES 911 + CS + VE G V++F VV DA+ L E + + L++ + YLFDE+ Sbjct 846 KVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEA 905 Query 912 GEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQ 970 G+ +AS MYC+F D ED + E+ + + ++D + + Sbjct 906 GDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDED----VVTGDNDDEDVV 961 Query 971 PEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSG 1030 + +ED + D+ G D++ + V T + + Sbjct 962 TGDNDDEDVVTGDNDDEDVVT-GDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDV 1020 Query 1031 YLKLTDNVYIKNADIVEE 1048 D+ + D +E Sbjct 1021 VTGDNDDEDVVTGDNDDE 1038 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 110/262 (42%), Gaps = 18/262 (7%) Query 1024 EVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAM 1083 E+ G L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A Sbjct 1351 ELPQLYG-LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKF 1409 Query 1084 QVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQH 1141 E+ + + G +VG V +G L K L++VGP+ + + LL AY++ N + Sbjct 1410 SKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNY 1469 Query 1142 EVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVE 1200 + L+ L+SAGIF SL + V V L +K +D + + K + Sbjct 1470 DCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALA 1529 Query 1201 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDI- 1259 ++ +K K + C ++ ++E L ++ L D+ Sbjct 1530 VRLTANVGRVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNNDVR 1581 Query 1260 -----NGNLHPDSATLVSDIDI 1276 P L++ D+ Sbjct 1582 DYLLSKMTSLPKDWRLINKFDV 1603 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 41/197 (21%), Positives = 73/197 (37%), Gaps = 21/197 (11%) Query 1600 DGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYP 1659 D D + + + ++ Y L V D ++S + + Y Sbjct 1094 DNDDQIVVTGDDVDDIESIYDFDTYKALLV-------FNDVYNDALFVSYGSSVETETYF 1146 Query 1660 QVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCN 1719 +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1147 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1206 Query 1720 KTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 1777 K + G V + + ++ N C CG L G++A+ + G + Sbjct 1207 KAIVLPQGGFVADFAYWFLNQFDI---NAYANWCCLKCGF-SFDLNGLDALFFYGDI--- 1259 Query 1778 QFKKGVQIPCTCGKQAT 1794 V C CG T Sbjct 1260 -----VSHVCKCGHNMT 1271 >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 3501 bits (9077), Expect = 0.0, Method: Composition-based stats. Identities = 1067/2942 (36%), Positives = 1602/2942 (54%), Gaps = 121/2942 (4%) Query 1512 KDWSYSGQ-STQLGIEFLKR----GDKSVYYTSNPTTFHLDGEV--ITFDNLKTLLSLRE 1564 KDW + G++ +K + + DG T + + LL+ Sbjct 1593 KDWRLINKFDVINGVKTVKYFECPNSIYICSQGKDFGYVCDGSFYKATVNQVCVLLA--- 1649 Query 1565 VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPND 1624 + I V TVD +N + + + +G+ G + DG DVTK+K + + K Y N Sbjct 1650 -KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENL 1708 Query 1625 DTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQ 1684 + A + D L Y + L KW S + + NNCY+ A L LQ Sbjct 1709 SLADISAVQSSFGFDQQQLLAYYNFL-TVCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQ 1767 Query 1685 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSC 1744 I LKFN Q+A+Y RAG AL+LA + E D + + + + A+L Sbjct 1768 HINLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGA 1827 Query 1745 KRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPF 1804 L ++C CG +Q + GV+AVM+ GTL+ G +I C C + + + PF Sbjct 1828 ICELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGRIV-HCTKLNVPF 1885 Query 1805 VMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT 1864 ++ S P +L A+ + G GHY H+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1865 DVFYKEN-SYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP-- 1921 D Y +N + T T Y LD V +P L YY + Y+T +PI +P+ Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPIIKAQFKPFAKV 2002 Query 1922 NASFDNFKFVCDNIKFADDLNQLTGYKKP-ASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 + + NFK V +I LN G+ E KVT +P GDVV Y + Sbjct 2003 DGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKRYF 2060 Query 1981 KGAKLLHKPIVW--HVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDN 2038 KG + KP++W H + N TY ++ ++ N + VL D+ Sbjct 2061 KGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------DS 2104 Query 2039 LACEDLKPVSEEVVENPTIQKDV-LECNVKTTEVVGDIILKPANNSLKITEEVGHTDLMA 2097 ++ E V V+E+ K+V L+ KT ++ II+ N+S+K+ + + D+ Sbjct 2105 VSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDVWD 2164 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTL---ATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 2154 Y+ + NELSR++ T+ +G+ + ++P D + N+ + Sbjct 2165 MYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPI-TIPIDLLCLRDD---NQTLLVPK 2220 Query 2155 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 2214 R + ++ + F + L FT T IA ++ L+ + Sbjct 2221 IFKARAIE--FYGFLKWLFIYVFSLLHFTNDKTIF----YTTEIASKFTFNLFCLALKNA 2274 Query 2215 FNYLKSPNFSKLIN-----IIIWF--LLLSVCLGSL---------IYSTAALGVLMSNLG 2258 F + F K + WF L ++V I+ + + + G Sbjct 2275 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2334 Query 2259 MPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-- 2316 + + C Y + + T+ +C GS C +C SG D LDTY +++ +Q + Sbjct 2335 LVTICDFYSKLGVGFTS----HFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2390 Query 2317 DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNS--WLMWLIINLVQM 2374 ++ L+ E + Y L+T +FY L +QLF ++ F+ + WL+ I+ + M Sbjct 2391 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2450 Query 2375 APISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSF 2434 P ++R YI + Y V H+V GCN + C+ CYKRN + RV+C+TIV GV R + Sbjct 2451 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2510 Query 2435 YVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSV 2494 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S Y+V + Sbjct 2511 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2570 Query 2495 TVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSA 2554 + L++D+ GQ+ Y+ S FV+++NL + K + V+V + + + ++ Sbjct 2571 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVVVESDA--DRANF 2628 Query 2555 KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVA 2614 +A V+Y+Q + +PILL+D+ L++ + V MFD YV+TF S F+V + V Sbjct 2629 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2688 Query 2615 TAEAELAKNVSLDNVLSTFISAARQGF-VDSDVETKDVVECLKLSHQSDIEVTGDSCNNY 2673 A A L + V L+ VL TF+ R+ +DSDVET+ + + + + + +E T ++ NN Sbjct 2689 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2748 Query 2674 MLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAA 2733 + TY K +N+ DLG I A+H+ VAK+ NI+ IW + F L+ L+ +++ A Sbjct 2749 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKAC 2808 Query 2734 KKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPV 2793 K L KLT V ++TT +LKGG +++N L L V+L+ + + + P Sbjct 2809 VKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFVSLICFI---LLWALLPT 2865 Query 2794 HVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGG--SYTNDKAC 2851 + + K +K ID GV RDI+ D CFANK FD W+ G Y N C Sbjct 2866 YSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNSMDC 2925 Query 2852 PLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATS 2911 P++ AV+ ++G + +P +LR LHFL F++ CYTP I Y DF S Sbjct 2926 PIVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYAS 2984 Query 2912 ACVLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGS-IIQFPNTYLE 2970 CVL++ CT+FK G P PYCY V++ + Y SL P TRY L + + I+FP+ E Sbjct 2985 GCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISE 3044 Query 2971 GSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNM 3030 G VR+V T YCR G CE +E G+C + + WVLNNDYYRS+PG FCG D +L Sbjct 3045 GIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQF 3104 Query 3031 FTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFT 3090 F+ LI+PI ++AS + G I+AIVV + YY ++ +RAFG+Y+ VV N +++ ++F Sbjct 3105 FSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVVVWCINFL 3164 Query 3091 VLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICIST 3150 +L + VY VY+ Y Y+T Y +++S + H+QW+VM+ ++PFW + Y+ + Sbjct 3165 MLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIA 3224 Query 3151 KHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLAL 3210 H W FS R++ N S STFEE +L TF++ K+ Y +L++ V YNRYL+L Sbjct 3225 NHVLWLFS--YCRKIGVNVCSDSTFEETSLTTFMITKDSYCRLKNSV--SDVAYNRYLSL 3280 Query 3211 YNKYKYFSGAMDTTSYREAACCHLAKALNDFS-NSGSDVLYQPPQTSITSAVLQSGFRKM 3269 YNKY+Y+SG MDT +YREAAC LAKA+ F+ N+G+DVLYQPP S++++ LQSG KM Sbjct 3281 YNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKM 3340 Query 3270 AFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNF 3329 P+ K+E C+V VT G+ TLNGLWLDD VYCPRHVIC+S +M P+Y LL R + +F Sbjct 3341 VSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICSSSNMNEPDYSALLCRVTLGDF 3400 Query 3330 LVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3389 + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G + Sbjct 3401 TIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGNVKPGETFTVLAAYNGRPQGAF 3460 Query 3390 QCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFV 3449 MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD GNFYGP+ Sbjct 3461 HVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYR 3520 Query 3450 DRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3509 D Q Q D TVNV+AWLYAA++N WF+ + DFN+ AM + + D Sbjct 3521 DAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVKADL 3580 Query 3510 VDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ 3569 V L L++ TG+++ + A++K L G GR ILGS EDE P DV +Q +GV Q Sbjct 3581 V--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKLQ 3637 Query 3570 SAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFV 3629 S KR IK T +W+L++ ++ +W++F ++ + + + ++ +F M+ V Sbjct 3638 SKTKRFIKETIYWILISTFLFSCIISAFVKWTIFMYINTH-MIGVTLCVLCFVSFMMLLV 3696 Query 3630 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASA 3688 KHKH +L ++++P L T+ Y N +V + WL +++ + + Sbjct 3697 KHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSYFVPAVNFTYVYEVFYGCIL 3756 Query 3689 VVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVV 3748 V I +T ++ D ++ + ++TL+ Y+G+ L++ + ++ I + Y+ Sbjct 3757 CVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLF--ITAFLGTYTWTT 3814 Query 3749 TTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTL 3808 + +A+ IV + +F ++ I+L Y F+GY +CY+G F LLN FR+ + Sbjct 3815 ILSLAIAK-IVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRMPM 3873 Query 3809 GVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCT 3868 GVY+Y +S QE RYMN+ GL PP+NS +A LN+KLLG+GG P I+V+ +QSK++DVKC Sbjct 3874 GVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVKCA 3933 Query 3869 SVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD-- 3926 +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL + AVD Sbjct 3934 NVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFANPAAVDTK 3993 Query 3927 ----INKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGD-SEVVLKKLK 3981 I+++ ++ + + LQA+ SEF ++ S+ + A++ A +G ++ +K+L+ Sbjct 3994 CLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQLE 4053 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4041 K+ N+AKS ++RD A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RKLD Sbjct 4054 KACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRKLD 4113 Query 4042 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQV 4101 N ALN+I++NA GCVPL+ IP A L +VIPD + D TYA ++W IQ V Sbjct 4114 NQALNSILDNAVKGCVPLSAIPALAANTLTIVIPDKQVFDKVVDNVYVTYAGSVWHIQTV 4173 Query 4102 VDADSKIVQLSEISMDNSPNLAWPLIVTALRANSA--VKLQNNELSPVALRQMSCAAGTT 4159 DAD QL++IS+D++ WPL++ A R N +QNNEL P L+ +G+ Sbjct 4174 QDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSGSD 4229 Query 4160 QTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDT 4219 YYN GR V A+LSD+ LK+ + K DG + EL+PPC+F Sbjct 4230 MNCNIPTQ--CYYNNGSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELDPPCKFSIQD 4286 Query 4220 PKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKA 4279 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD K Sbjct 4287 VKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPKKT 4346 Query 4280 YKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNP 4339 Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++HP+ Sbjct 4347 YLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHPDV 4406 Query 4340 KGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSF 4399 G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC +QS D +F Sbjct 4407 DGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SSVAVQSKDL-NF 4463 Query 4400 LN 4401 LN Sbjct 4464 LN 4465 Score = 451 bits (1159), Expect = 5e-125, Method: Composition-based stats. Identities = 201/1098 (18%), Positives = 376/1098 (34%), Gaps = 192/1098 (17%) Query 13 HVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIK 72 HVQ +L +RD+ V + + V + +K GT L++ L + YV Sbjct 71 HVQSNL----IRDIFVH---EDLHVVEVLTKTAVKSGTAILIKSPLHSLGGFPKGYVMGL 123 Query 73 RSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVL------LRKN 126 +T +V+ L +G LG +VP G +P K + ++ Sbjct 124 FRSYKTK--RYVVHHLSMTTSTTNFGED--FLGWIVPF-GFMPSYVHKWFQFCRLYIEES 178 Query 127 GNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGGAYTRYV 186 + D D E+ +P + + L+R+ G +V Sbjct 179 DLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQK---------AYALLRQYRGIKPVLFV 229 Query 187 DNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSE 246 D C G +C++ +L + + + +AW+ R Sbjct 230 DQYGCDYSGKLADCLQAY------GHYSLQDMRQKQSVW---LANCDFDIVVAWHVVRDS 280 Query 247 K-SYELQTPFEIKLAKKF-----DTFNGEC----PNFVFPLNSIIKTIQPRVEKKKLDGF 296 + LQT I K D +G+ P + ++I+ + P + K Sbjct 281 RFVMRLQTIATICGIKYVAQPTEDVVDGDVVIREPVHLLSADAIVLKL-PSLMKVMTHMD 339 Query 297 MGRIRSVYPVASPNECNQMCLSTLMKC--DHCGETSWQTGDFVKATCE-FCGTENLTKE- 352 I+S+Y V +C + + C D+C W +G+ + C T + E Sbjct 340 DFSIKSIYNV-DLCDCGFVMQYGYVDCFNDNCDFYGWVSGNMMDGFSCPLCCTVYDSSEV 398 Query 353 GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFS 412 A + G +P+N V+ + + G FG C++ Sbjct 399 KAQSSGVIPENPVL-----------------FTNSTDTVNHDSFNLYGYSVTPFGSCIY- 440 Query 413 YVGCHNKCAYWVPRASANIGC----NHTGVVGEGSEGLNDNLL-EILQKEKVNINIVGDF 467 + W+P +++ ++GVVG S L+ L + V G+ Sbjct 441 WSPRPG---LWIPIIKSSVKSYDDLVYSGVVGCKSIVKETALITHALYLDYVQC-KCGNL 496 Query 468 KLNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQK 527 + N + G++ +Q++ + G++ + Sbjct 497 EQNH-------------------ILGVNNSWCRQLLLNRGDYNM---------------- 521 Query 528 SILSPLYAFASEAARVVRSIFSRTLETAQNSVRV------------LQKAAITILDGISQ 575 +L + F R+ F+ + L ++ I +SQ Sbjct 522 -LLKNIDLFVKR-----RADFACKFAVCGDGFVPFLLDGLIPRSYYLIQSGIFFTSLMSQ 575 Query 576 YSLRLIDAMMFTSDLATNNLVVMA-YITGGVVQLTSQW----------LTNIFGTVYEKL 624 +S + D + L + + V YI V +L +Q+ + N F T+ + Sbjct 576 FSQEVSDMCLKMCILFMDRVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTMLDAS 635 Query 625 KPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNK 684 P WL + G+ F+ + A I AK + TFFKL+ Sbjct 636 APATGWLLYQLLNGL-----------FVVSQANFNFVALIPDYAKILVNKFYTFFKLL-- 682 Query 685 FLALCADSIIIGGAKLKALN-----LGETFVTHSKGLYRKCVKSREETGLLMPLKA-PKE 738 L ++ LK +N +G F S GL G ++P A ++ Sbjct 683 -LECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI---------PGFVLPCNAQEQQ 732 Query 739 IIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTS--EAVEAPLVGTPVCINGLMLLEIKDT 796 I F EG + E V+++ ++ ++ S E + P +CI M + Sbjct 733 IYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGD 785 Query 797 EKYCALAPNMMV-TNNTFTLKGGAPTKVTFGDDTVI-EVQGYKSVNITFELDERIDKVLN 854 + + + + + + A KV F + V+ E+ +V + F+LD D +L Sbjct 786 KFFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILG 845 Query 855 EKCSAYTVELGTEVNEFACVVADAVIKTLQPVSE---LLTPLGIDLDEWSMATYYLFDES 911 + CS + VE G V++F VV DA+ L E + + L++ + YLFDE+ Sbjct 846 KVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEA 905 Query 912 GEFKLASHMYCSFYPPD-EDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQ 970 G+ +AS MYC+F D ED + E+ + + ++D + + Sbjct 906 GDEAMASRMYCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDED----VVTGDNDDEDVV 961 Query 971 PEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSG 1030 + +ED + D+ G D++ + V T + + Sbjct 962 TGDNDDEDVVTGDNDDEDVVT-GDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDV 1020 Query 1031 YLKLTDNVYIKNADIVEE 1048 D+ + D +E Sbjct 1021 VTGDNDDEDVVTGDNDDE 1038 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 110/262 (42%), Gaps = 18/262 (7%) Query 1024 EVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAM 1083 E+ G L +T NV DI+ A+ VK V+VN AN ++ HGGGVA A+ A Sbjct 1351 ELPQLYG-LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKF 1409 Query 1084 QVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKG--EDIQLLKSAYENFNQH 1141 E+ + + G +VG V +G L K L++VGP+ + + LL AY++ N + Sbjct 1410 SKETAAMVKSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNY 1469 Query 1142 EVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVS-SFLEMKSEKQVE 1200 + L+ L+SAGIF SL + V V L +K +D + + K + Sbjct 1470 DCCLSTLISAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDIIQKCQITSVVGTKALA 1529 Query 1201 QKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDI- 1259 ++ +K K + C ++ ++E L ++ L D+ Sbjct 1530 VRLTANVGRVIKFETDAYKLFLSGD--------DCFVSNSSVIQEVLLLRHDIQLNNDVR 1581 Query 1260 -----NGNLHPDSATLVSDIDI 1276 P L++ D+ Sbjct 1582 DYLLSKMTSLPKDWRLINKFDV 1603 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 41/197 (21%), Positives = 73/197 (37%), Gaps = 21/197 (11%) Query 1600 DGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYP 1659 D D + + + ++ Y L V D ++S + + Y Sbjct 1094 DNDDQIVVTGDDVDDIESIYDFDTYKALLV-------FNDVYNDALFVSYGSSVETETYF 1146 Query 1660 QVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCN 1719 +VNGL S NC+L + LL +Q++ KF A+++ + + G +F +L Sbjct 1147 KVNGLWSPTITHTNCWLRSVLLVMQKLPFKFKDLAIENMWLSYKVGYNQSFVDYLLTTIP 1206 Query 1720 KTVGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYE 1777 K + G V + + ++ N C CG L G++A+ + G + Sbjct 1207 KAIVLPQGGFVADFAYWFLNQFDI---NAYANWCCLKCGF-SFDLNGLDALFFYGDI--- 1259 Query 1778 QFKKGVQIPCTCGKQAT 1794 V C CG T Sbjct 1260 -----VSHVCKCGHNMT 1271 >sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=1a PE=3 SV=1 Length=3951 Score = 2695 bits (6985), Expect = 0.0, Method: Composition-based stats. Identities = 863/2964 (29%), Positives = 1368/2964 (46%), Gaps = 317/2964 (11%) Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + ++ T D + + V+ + G QFG Y V + + + YV D Sbjct 1176 KQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVYAKNKIV--FTADDVEDKEILYVPTTDK 1232 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 ++ Y+ D Y+ L +KW + ++W D NC++++A++ LQ Sbjct 1233 SIL-----EYYGLDAQKYVIYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQA 1285 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 +++F L +A+ + G+ +F A A C VG+ D ++ L +H + D Sbjct 1286 AKIRFK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTN 1344 Query 1746 RVLNV-VCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 1803 L V CG + L+G+EA + + + FK TCG T +++ P Sbjct 1345 AFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLP 1404 Query 1804 FVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSKETLYCIDGALLTKSSEYK 1860 ++++ A PA + + G+ GH Y D + K Sbjct 1405 YLLLFATDGPATVDCDEDAVGT-VVFVGSTNSGHCYTQA----AGQAFDNLAKDRKFGKK 1459 Query 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 P Y ++ K + + N Sbjct 1460 SPYITAMYTRFAFKNETSLPVAKQSKGKSKSVKEDVSNL------------------ATS 1501 Query 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 ASFDN D Q Y LKV PD ++ Y Sbjct 1502 SKASFDNL----------TDFEQW--YDSNIYESLKVQESPD--------NFDKYVSF-- 1539 Query 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 T + + P T +R + S + + F + D Sbjct 1540 ----------------TTKEDSKLPLTLKVRGIKSVVDFRSKDGFIYKLTPDTD------ 1577 Query 2041 CEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVGDIILKPANNSLKITEEVG 2091 PV V++ +++ +E N + + + A N +K+ +++G Sbjct 1578 ENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNYYSKSLHIPTFWENAENFVKMGDKIG 1637 Query 2092 HTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVS 2151 + ++ + KPN L R+ + A G + V + I A +KV Sbjct 1638 GVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGG 1692 Query 2152 TTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRIKASMPTTIAKNT 2202 +T + +C P F TL+ L F +++ + AS T + K Sbjct 1693 GVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVV 1752 Query 2203 VKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSY 2262 + ++ +I+WF+ S ++++ + + L S Sbjct 1753 LATL----------------------LIVWFVYTS---NPVMFTGIRV---LDFLFEGSL 1784 Query 2263 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFG 2322 C Y++ +S + YC C VCL DSL Y +++ A G Sbjct 1785 CGPYKDYGKDS--FDVLRYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKD-----AASG 1837 Query 2323 LVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAM 2380 + W Y++F F V G I Y + + NS ++ + + + + Sbjct 1838 FIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTGVCFLDWF-VQTV 1891 Query 2381 VRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 2435 + F + +Y W Y VH + C TC +C + R+ R E + +V G ++ + Sbjct 1892 FSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVH 1951 Query 2436 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 2495 VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD Sbjct 1952 VYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEAC 2011 Query 2496 VKNGSIHLYFDK-AGQKTYERHSLSHFVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESS 2553 + + ++L + K ++ F D L+ A K +L I DG C S Sbjct 2012 LVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQS 2071 Query 2554 A------KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 2607 A K+A++YY+Q +C+PIL+LDQAL + P+ Sbjct 2072 AHALEEAKNAAIYYAQYLCKPILILDQAL---------------------YEQLVVEPVS 2110 Query 2608 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 2667 K +++ + L+ +S+D + + + + S + ++ V+ H D++ TG Sbjct 2111 K--SVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVDYTG 2168 Query 2668 DSCNNYMLTY-NKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 2726 D N + +Y +TPRD G I+ A N +V + ++W + + LS+ Sbjct 2169 DGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAP--PVVWKFSELIKLSDSCL 2226 Query 2727 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL--KGGKIVN---NWLKQLIKVTLVFL 2781 K + SA K+ + F +T + +QV+ T K+ + K G IV+ K K L+F Sbjct 2227 KYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKCFKSYFKWLLIFY 2286 Query 2782 F-----VAAIFYLITPVHVMSKHTDFSS--EIIGYKAIDGGVTRDIASTDTCFANKHADF 2834 + +Y+ + D +S + G+K ID GV R+I DTCF+NK +F Sbjct 2287 ILFTACCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVPEDTCFSNKFVNF 2346 Query 2835 DTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNG-DFLH---------F 2884 D ++ G Y N + CP++ AVI + G V G+PG + +G F+H + Sbjct 2347 DAFW---GRPYDNSRNCPIVTAVIDGD-GTVATGVPGFVSWVMDGVMFIHMTQTERKPWY 2402 Query 2885 LPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYD-TNVLEGSV 2943 +P F+ + YT +I F TS + +A C ++ AS P YC++ N G++ Sbjct 2403 IPTWFNRE-IVGYTQDSIITEGSFYTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGAL 2460 Query 2944 AYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGR 3003 + S+ P Y +G + P L V DS YCR CE + G CVS + + Sbjct 2461 PFGSIIPHRVYFQPNGVRLIVPQQILHTPYVVKFVSDS-YCRGSVCEYTRPGYCVSLNPQ 2519 Query 3004 WVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYY 3063 WVL ND Y S PGVFCG L+ +M + + +I + ++ +VV + Sbjct 2520 WVLFNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAM 2578 Query 3064 FMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFL 3123 ++F+ F Y+ V L+++++ +LC+ S L + V+Y Y + + + + Sbjct 2579 VIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVII 2638 Query 3124 AHIQWMVMFTPLVPFWITIAY---IICISTKHFYWFFSNYLKRRVVFNGVSF-STFEEAA 3179 H + F +VP W+ Y II + T F W + R +++G F ++ AA Sbjct 2639 MHCWLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKLYDGNEFVGNYDLAA 2698 Query 3180 LCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALN 3239 TF++ ++KL +++ ++ YL+ Y + KY+SG Y +A LA AL+ Sbjct 2699 KSTFVIRGSEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALD 2755 Query 3240 DFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVV 3299 + NSG +++Y PP+ SI + LQSGF+K+ PS VE C+V V+ LNGLWL D + Sbjct 2756 QYRNSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTI 2815 Query 3300 YCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRVIGHSMQNCVLKLKVDTAN 3358 YCPRHV+ + D+L +NH F V + V L V+ ++ VL L+ AN Sbjct 2816 YCPRHVL---GKFSGDQWNDVLNLANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVAN 2872 Query 3359 PKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYD 3418 +TPKYKF++ G +F++ Y G+ G+Y MR N TI+ SFL G+CGSVGFNI+ Sbjct 2873 AETPKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKG 2932 Query 3419 CVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVING 3478 V+F YMHH+ELP +H GTDL G FYG +VD + AQ D +T N++AWLYAA+I+ Sbjct 2933 VVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISV 2992 Query 3479 DRW------FLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLK 3532 +L T +++D+N A + P + + LSA TG+ V + ++ Sbjct 2993 KESSFSLPKWLESTTVSVDDYNKWAGDNGFTPFSTST--AITKLSAITGVDVCKLLRTIM 3050 Query 3533 ELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHW---LLLTILT 3589 + + G ILG EDE TP V Q GV QS+ R + W +L L Sbjct 3051 -VKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSFVRKAT-SWFWSRCVLACFLF 3108 Query 3590 SLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATV-- 3647 L +V T L F++Y L A+ I+ + VKH A++ FLLP+L TV Sbjct 3109 VLCAIVLFTAVPLKFYVYAAVILLMAVLFISFT------VKHVMAYMDTFLLPTLITVII 3162 Query 3648 ---AYFNMVY--MPASWVMRIMTWLDM--VDTSL----------SGFK-LKDCVMYASAV 3689 A +Y + + V+ + W D DT + + FK ++ C M + Sbjct 3163 GVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMFLPLVLYTAFKCVQGCYMNSFNT 3222 Query 3690 VLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVT 3749 LL+L + ++T N LT + GN W L + Sbjct 3223 SLLMLYQFVKL----GFVIYTSSNTLTAYTE---GN--------WELFFELVHTTVLANV 3267 Query 3750 TVMFLARGIVFMC----VEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFR 3805 + L VF C + YC ++ L +M+ +G+ CTCYFGL+ +N+ F Sbjct 3268 SSNSLIGLFVFKCAKWMLYYCNATYLNNYVLMAVMV--NCIGWLCTCYFGLYWWVNKVFG 3325 Query 3806 LTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDV 3865 LTLG Y++ VS ++RYM + PPK + F NI + G+GG + +ATVQ+K+SDV Sbjct 3326 LTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQGIGGDRVLPIATVQAKLSDV 3385 Query 3866 KCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAV 3925 KCT+VVL+ +L +L VE++SK+ V+LHN IL + D E + ++ +L L + + Sbjct 3386 KCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTI 3445 Query 3926 DINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVAN----GDSEVVLKKLK 3981 D+++ C+++L LQ++ EFS +PSYA + A+ YE+ + + G ++ L + Sbjct 3446 DLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEKVLVDSKNGGVTQQELAAYR 3505 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4041 K+ N+AKS FDRD A+Q+KL+ MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K+D Sbjct 3506 KAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKID 3565 Query 4042 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQV 4101 ++ LN + + A G VPL +P+ + KL +VIPD T+ +G TY++ +W I V Sbjct 3566 SEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNIDTV 3625 Query 4102 VDADSKIVQLSEISMD-----NSPNLAWPLIVTALRANS---AVKLQNNELSPVALRQMS 4153 +DAD + + + N+AWPL V R V LQNNEL P ++ + Sbjct 3626 IDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNKVDVVLQNNELMPHGVKTKA 3685 Query 4154 CAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPC 4213 C AG Q C+ ++ YY G V A+ S +LK A F G IY +L+PPC Sbjct 3686 CVAGVDQAHCSVES-KCYYTNISGNSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDPPC 3743 Query 4214 RFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFCAF 4272 +F +V YLYFIK ++ RGMVLG+++ V LQ+ G+ TE +LS C+F Sbjct 3744 KFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSF 3803 Query 4273 AVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRC 4332 AVD A Y Y+A+G QP+ NCVKML H G+G AIT P DQ+S+GGAS CLYCR Sbjct 3804 AVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRA 3863 Query 4333 HIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLRE 4388 HI HP N G C KG +VQIPTT DPVGF L+N VCTVC W GYGC CD LR+ Sbjct 3864 HIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSLRQ 3922 Query 4389 PM--LQSA-----DAQSFLNGFAV 4405 P +QS +++LNG+ V Sbjct 3923 PKSSVQSVAGASDFDKNYLNGYGV 3946 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 119/328 (36%), Gaps = 29/328 (9%) Query 925 YPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL--DD 982 P + E+ Q E D A + EE +E L Sbjct 909 EPVENSTGSSKTMTEQVVVEDQELPVVEQDQDVVVYTPTDLEVAKETAEEVDEFILIFAV 968 Query 983 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPV---VQTIEVNSFSGYLKLTDNVY 1039 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ Sbjct 969 PKEEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLT 1024 Query 1040 IKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKV 1099 + A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1025 VVIAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ- 1080 Query 1100 GGSCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGA 1156 V C+ +VVGP + L +AY+N V+ + P+LS GIFG Sbjct 1081 --RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV 1138 Query 1157 D---PIHSLRVCVDTVRTNVYLAVFDKNLYDKL------VSSFL--EMKSEKQVEQKIAE 1205 D I ++R + V L + D + +L + + + K + Sbjct 1139 DFKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGD 1198 Query 1206 IPKEEVKPFITESKPSVEQRKQDDKKIK 1233 + + + +D + + Sbjct 1199 SLGQFGQVYAKNKIVFTADDVEDKEILY 1226 Score = 45.1 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 63/488 (13%), Positives = 145/488 (30%), Gaps = 50/488 (10%) Query 553 ETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQW 612 T + +R+ Q A + D S ++ + + LA + + V Sbjct 430 ATIADVLRLFQSARVIAEDVWSSFTEKSFE----FWKLAYGKVRNLEEFVKTYVCKAQMS 485 Query 613 LTNIFGTVYEKLKPVLDWLEEKF----KEGVEFLRDGWEIVKFISTCACEIVGGQIVTCA 668 + + + E + ++ + K + V+F W+ A IV Sbjct 486 IVILAAVLGEDIWHLVSQVIYKLGVLFTKVVDFCDKHWKGFCVQLKRAKLIVTETFCVLK 545 Query 669 KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETG 728 + Q ++ L ++ + G+++ E Sbjct 546 GVAQHCFQLLLDAIHSLYK------SFKKCALGRIHG--DLLFWKGGVHKIVQDGDEIWF 597 Query 729 LLMPLKAPKEIIFLEGETLPTEVLTEEVVLKT--GDLQPLEQPTSEAVEAPLVGTPVCIN 786 + +++ ++ +++ EV + + + G + +E Sbjct 598 DAIDSVDVEDLGVVQEKSIDFEVCDDVTLPENQPGHMVQIEDDGKNY------------- 644 Query 787 GLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQ--GYKSVNITFE 844 + KD Y + N VTFG+ TV E+ + ++ E Sbjct 645 -MFFRFKKDENIYYTPMSQLGAINVVCK---AGGKTVTFGETTVQEIPPPDVVPIKVSIE 700 Query 845 LD-ERIDKVLNEKCSA-YTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSM 902 E + + + V+ V + V + + + +L ++ Sbjct 701 CCGEPWNTIFKKAYKEPIEVDTDLTVEQLLSV----IYEKMCDDLKLFPEAPEPPPFENV 756 Query 903 ATYYLFDESGEFKLASHMYC-----SFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQG 957 A + + + H+ +ED EE D + E E E+D Sbjct 757 ALVDKNGKDLDCIKSCHLIYRDYESDDDIEEEDAEECDTDSGEAEECDTNSECEEEDEDT 816 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 K L A+++ +ED+ + + +D + + + V E + Sbjct 817 KVLALIQDPASIKYPLPLDEDYSVYNG--CIVHKDALDVVNLPSGEETFVVNNCFEGAVK 874 Query 1018 PVVQTIEV 1025 P+ Q + Sbjct 875 PLPQKVVD 882 >sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=1a PE=1 SV=1 Length=3951 Score = 2695 bits (6985), Expect = 0.0, Method: Composition-based stats. Identities = 863/2964 (29%), Positives = 1368/2964 (46%), Gaps = 317/2964 (11%) Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + ++ T D + + V+ + G QFG Y V + + + YV D Sbjct 1176 KQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVYAKNKIV--FTADDVEDKEILYVPTTDK 1232 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 ++ Y+ D Y+ L +KW + ++W D NC++++A++ LQ Sbjct 1233 SIL-----EYYGLDAQKYVIYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQA 1285 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 +++F L +A+ + G+ +F A A C VG+ D ++ L +H + D Sbjct 1286 AKIRFK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTN 1344 Query 1746 RVLNV-VCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 1803 L V CG + L+G+EA + + + FK TCG T +++ P Sbjct 1345 AFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLP 1404 Query 1804 FVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSKETLYCIDGALLTKSSEYK 1860 ++++ A PA + + G+ GH Y D + K Sbjct 1405 YLLLFATDGPATVDCDEDAVGT-VVFVGSTNSGHCYTQA----AGQAFDNLAKDRKFGKK 1459 Query 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 P Y ++ K + + N Sbjct 1460 SPYITAMYTRFAFKNETSLPVAKQSKGKSKSVKEDVSNL------------------ATS 1501 Query 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 ASFDN D Q Y LKV PD ++ Y Sbjct 1502 SKASFDNL----------TDFEQW--YDSNIYESLKVQESPD--------NFDKYVSF-- 1539 Query 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 T + + P T +R + S + + F + D Sbjct 1540 ----------------TTKEDSKLPLTLKVRGIKSVVDFRSKDGFIYKLTPDTD------ 1577 Query 2041 CEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVGDIILKPANNSLKITEEVG 2091 PV V++ +++ +E N + + + A N +K+ +++G Sbjct 1578 ENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNYYSKSLHIPTFWENAENFVKMGDKIG 1637 Query 2092 HTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVS 2151 + ++ + KPN L R+ + A G + V + I A +KV Sbjct 1638 GVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGG 1692 Query 2152 TTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRIKASMPTTIAKNT 2202 +T + +C P F TL+ L F +++ + AS T + K Sbjct 1693 GVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVV 1752 Query 2203 VKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSY 2262 + ++ +I+WF+ S ++++ + + L S Sbjct 1753 LATL----------------------LIVWFVYTS---NPVMFTGIRV---LDFLFEGSL 1784 Query 2263 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFG 2322 C Y++ +S + YC C VCL DSL Y +++ A G Sbjct 1785 CGPYKDYGKDS--FDVLRYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKD-----AASG 1837 Query 2323 LVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAM 2380 + W Y++F F V G I Y + + NS ++ + + + + Sbjct 1838 FIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTGVCFLDWF-VQTV 1891 Query 2381 VRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 2435 + F + +Y W Y VH + C TC +C + R+ R E + +V G ++ + Sbjct 1892 FSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVH 1951 Query 2436 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 2495 VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD Sbjct 1952 VYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEAC 2011 Query 2496 VKNGSIHLYFDK-AGQKTYERHSLSHFVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESS 2553 + + ++L + K ++ F D L+ A K +L I DG C S Sbjct 2012 LVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQS 2071 Query 2554 A------KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 2607 A K+A++YY+Q +C+PIL+LDQAL + P+ Sbjct 2072 AHALEEAKNAAIYYAQYLCKPILILDQAL---------------------YEQLVVEPVS 2110 Query 2608 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 2667 K +++ + L+ +S+D + + + + S + ++ V+ H D++ TG Sbjct 2111 K--SVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVDYTG 2168 Query 2668 DSCNNYMLTY-NKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 2726 D N + +Y +TPRD G I+ A N +V + ++W + + LS+ Sbjct 2169 DGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAP--PVVWKFSELIKLSDSCL 2226 Query 2727 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL--KGGKIVN---NWLKQLIKVTLVFL 2781 K + SA K+ + F +T + +QV+ T K+ + K G IV+ K K L+F Sbjct 2227 KYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKCFKSYFKWLLIFY 2286 Query 2782 F-----VAAIFYLITPVHVMSKHTDFSS--EIIGYKAIDGGVTRDIASTDTCFANKHADF 2834 + +Y+ + D +S + G+K ID GV R+I DTCF+NK +F Sbjct 2287 ILFTACCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVPEDTCFSNKFVNF 2346 Query 2835 DTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNG-DFLH---------F 2884 D ++ G Y N + CP++ AVI + G V G+PG + +G F+H + Sbjct 2347 DAFW---GRPYDNSRNCPIVTAVIDGD-GTVATGVPGFVSWVMDGVMFIHMTQTERKPWY 2402 Query 2885 LPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYD-TNVLEGSV 2943 +P F+ + YT +I F TS + +A C ++ AS P YC++ N G++ Sbjct 2403 IPTWFNRE-IVGYTQDSIITEGSFYTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGAL 2460 Query 2944 AYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGR 3003 + S+ P Y +G + P L V DS YCR CE + G CVS + + Sbjct 2461 PFGSIIPHRVYFQPNGVRLIVPQQILHTPYVVKFVSDS-YCRGSVCEYTRPGYCVSLNPQ 2519 Query 3004 WVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYY 3063 WVL ND Y S PGVFCG L+ +M + + +I + ++ +VV + Sbjct 2520 WVLFNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAM 2578 Query 3064 FMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFL 3123 ++F+ F Y+ V L+++++ +LC+ S L + V+Y Y + + + + Sbjct 2579 VIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVII 2638 Query 3124 AHIQWMVMFTPLVPFWITIAY---IICISTKHFYWFFSNYLKRRVVFNGVSF-STFEEAA 3179 H + F +VP W+ Y II + T F W + R +++G F ++ AA Sbjct 2639 MHCWLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKLYDGNEFVGNYDLAA 2698 Query 3180 LCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALN 3239 TF++ ++KL +++ ++ YL+ Y + KY+SG Y +A LA AL+ Sbjct 2699 KSTFVIRGSEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALD 2755 Query 3240 DFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVV 3299 + NSG +++Y PP+ SI + LQSGF+K+ PS VE C+V V+ LNGLWL D + Sbjct 2756 QYRNSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTI 2815 Query 3300 YCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRVIGHSMQNCVLKLKVDTAN 3358 YCPRHV+ + D+L +NH F V + V L V+ ++ VL L+ AN Sbjct 2816 YCPRHVL---GKFSGDQWNDVLNLANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVAN 2872 Query 3359 PKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYD 3418 +TPKYKF++ G +F++ Y G+ G+Y MR N TI+ SFL G+CGSVGFNI+ Sbjct 2873 AETPKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKG 2932 Query 3419 CVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVING 3478 V+F YMHH+ELP +H GTDL G FYG +VD + AQ D +T N++AWLYAA+I+ Sbjct 2933 VVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISV 2992 Query 3479 DRW------FLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLK 3532 +L T +++D+N A + P + + LSA TG+ V + ++ Sbjct 2993 KESSFSLPKWLESTTVSVDDYNKWAGDNGFTPFSTST--AITKLSAITGVDVCKLLRTIM 3050 Query 3533 ELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHW---LLLTILT 3589 + + G ILG EDE TP V Q GV QS+ R + W +L L Sbjct 3051 -VKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSFVRKAT-SWFWSRCVLACFLF 3108 Query 3590 SLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATV-- 3647 L +V T L F++Y L A+ I+ + VKH A++ FLLP+L TV Sbjct 3109 VLCAIVLFTAVPLKFYVYAAVILLMAVLFISFT------VKHVMAYMDTFLLPTLITVII 3162 Query 3648 ---AYFNMVY--MPASWVMRIMTWLDM--VDTSL----------SGFK-LKDCVMYASAV 3689 A +Y + + V+ + W D DT + + FK ++ C M + Sbjct 3163 GVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMFLPLVLYTAFKCVQGCYMNSFNT 3222 Query 3690 VLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVT 3749 LL+L + ++T N LT + GN W L + Sbjct 3223 SLLMLYQFVKL----GFVIYTSSNTLTAYTE---GN--------WELFFELVHTTVLANV 3267 Query 3750 TVMFLARGIVFMC----VEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFR 3805 + L VF C + YC ++ L +M+ +G+ CTCYFGL+ +N+ F Sbjct 3268 SSNSLIGLFVFKCAKWMLYYCNATYLNNYVLMAVMV--NCIGWLCTCYFGLYWWVNKVFG 3325 Query 3806 LTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDV 3865 LTLG Y++ VS ++RYM + PPK + F NI + G+GG + +ATVQ+K+SDV Sbjct 3326 LTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQGIGGDRVLPIATVQAKLSDV 3385 Query 3866 KCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAV 3925 KCT+VVL+ +L +L VE++SK+ V+LHN IL + D E + ++ +L L + + Sbjct 3386 KCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTI 3445 Query 3926 DINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVAN----GDSEVVLKKLK 3981 D+++ C+++L LQ++ EFS +PSYA + A+ YE+ + + G ++ L + Sbjct 3446 DLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEKVLVDSKNGGVTQQELAAYR 3505 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4041 K+ N+AKS FDRD A+Q+KL+ MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K+D Sbjct 3506 KAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKID 3565 Query 4042 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQV 4101 ++ LN + + A G VPL +P+ + KL +VIPD T+ +G TY++ +W I V Sbjct 3566 SEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNIDTV 3625 Query 4102 VDADSKIVQLSEISMD-----NSPNLAWPLIVTALRANS---AVKLQNNELSPVALRQMS 4153 +DAD + + + N+AWPL V R V LQNNEL P ++ + Sbjct 3626 IDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNKVDVVLQNNELMPHGVKTKA 3685 Query 4154 CAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPC 4213 C AG Q C+ ++ YY G V A+ S +LK A F G IY +L+PPC Sbjct 3686 CVAGVDQAHCSVES-KCYYTNISGNSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDPPC 3743 Query 4214 RFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFCAF 4272 +F +V YLYFIK ++ RGMVLG+++ V LQ+ G+ TE +LS C+F Sbjct 3744 KFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSF 3803 Query 4273 AVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRC 4332 AVD A Y Y+A+G QP+ NCVKML H G+G AIT P DQ+S+GGAS CLYCR Sbjct 3804 AVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRA 3863 Query 4333 HIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLRE 4388 HI HP N G C KG +VQIPTT DPVGF L+N VCTVC W GYGC CD LR+ Sbjct 3864 HIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSLRQ 3922 Query 4389 PM--LQSA-----DAQSFLNGFAV 4405 P +QS +++LNG+ V Sbjct 3923 PKSSVQSVAGASDFDKNYLNGYGV 3946 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 119/328 (36%), Gaps = 29/328 (9%) Query 925 YPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL--DD 982 P + E+ Q E D A + EE +E L Sbjct 909 EPVENSTGSSKTMTEQVVVEDQELPVVEQDQDVVVYTPTDLEVAKETAEEVDEFILIFAV 968 Query 983 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPV---VQTIEVNSFSGYLKLTDNVY 1039 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ Sbjct 969 PKEEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLT 1024 Query 1040 IKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKV 1099 + A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1025 VVIAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ- 1080 Query 1100 GGSCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGA 1156 V C+ +VVGP + L +AY+N V+ + P+LS GIFG Sbjct 1081 --RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV 1138 Query 1157 D---PIHSLRVCVDTVRTNVYLAVFDKNLYDKL------VSSFL--EMKSEKQVEQKIAE 1205 D I ++R + V L + D + +L + + + K + Sbjct 1139 DFKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGD 1198 Query 1206 IPKEEVKPFITESKPSVEQRKQDDKKIK 1233 + + + +D + + Sbjct 1199 SLGQFGQVYAKNKIVFTADDVEDKEILY 1226 Score = 45.1 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 63/488 (13%), Positives = 145/488 (30%), Gaps = 50/488 (10%) Query 553 ETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQW 612 T + +R+ Q A + D S ++ + + LA + + V Sbjct 430 ATIADVLRLFQSARVIAEDVWSSFTEKSFE----FWKLAYGKVRNLEEFVKTYVCKAQMS 485 Query 613 LTNIFGTVYEKLKPVLDWLEEKF----KEGVEFLRDGWEIVKFISTCACEIVGGQIVTCA 668 + + + E + ++ + K + V+F W+ A IV Sbjct 486 IVILAAVLGEDIWHLVSQVIYKLGVLFTKVVDFCDKHWKGFCVQLKRAKLIVTETFCVLK 545 Query 669 KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETG 728 + Q ++ L ++ + G+++ E Sbjct 546 GVAQHCFQLLLDAIHSLYK------SFKKCALGRIHG--DLLFWKGGVHKIVQDGDEIWF 597 Query 729 LLMPLKAPKEIIFLEGETLPTEVLTEEVVLKT--GDLQPLEQPTSEAVEAPLVGTPVCIN 786 + +++ ++ +++ EV + + + G + +E Sbjct 598 DAIDSVDVEDLGVVQEKSIDFEVCDDVTLPENQPGHMVQIEDDGKNY------------- 644 Query 787 GLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQ--GYKSVNITFE 844 + KD Y + N VTFG+ TV E+ + ++ E Sbjct 645 -MFFRFKKDENIYYTPMSQLGAINVVCK---AGGKTVTFGETTVQEIPPPDVVPIKVSIE 700 Query 845 LD-ERIDKVLNEKCSA-YTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSM 902 E + + + V+ V + V + + + +L ++ Sbjct 701 CCGEPWNTIFKKAYKEPIEVDTDLTVEQLLSV----IYEKMCDDLKLFPEAPEPPPFENV 756 Query 903 ATYYLFDESGEFKLASHMYC-----SFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQG 957 A + + + H+ +ED EE D + E E E+D Sbjct 757 ALVDKNGKDLDCIKSCHLIYRDYESDDDIEEEDAEECDTDSGEAEECDTNSECEEEDEDT 816 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 K L A+++ +ED+ + + +D + + + V E + Sbjct 817 KVLALIQDPASIKYPLPLDEDYSVYNG--CIVHKDALDVVNLPSGEETFVVNNCFEGAVK 874 Query 1018 PVVQTIEV 1025 P+ Q + Sbjct 875 PLPQKVVD 882 >sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=rep PE=3 SV=1 Length=6629 Score = 2687 bits (6966), Expect = 0.0, Method: Composition-based stats. Identities = 861/2960 (29%), Positives = 1365/2960 (46%), Gaps = 317/2960 (11%) Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + ++ T D + + V+ + G QFG Y V + + + YV D Sbjct 1176 KQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVYAKNKIV--FTADDVEDKEILYVPTTDK 1232 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 ++ Y+ D Y+ L +KW + ++W D NC++++A++ LQ Sbjct 1233 SIL-----EYYGLDAQKYVIYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQA 1285 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 +++F L +A+ + G+ +F A A C VG+ D ++ L +H + D Sbjct 1286 AKIRFK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTN 1344 Query 1746 RVLNV-VCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 1803 L V CG + L+G+EA + + + FK TCG T +++ P Sbjct 1345 AFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLP 1404 Query 1804 FVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSKETLYCIDGALLTKSSEYK 1860 ++++ A PA + + G+ GH Y D + K Sbjct 1405 YLLLFATDGPATVDCDEDAVGT-VVFVGSTNSGHCYTQA----AGQAFDNLAKDRKFGKK 1459 Query 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 P Y ++ K + + N Sbjct 1460 SPYITAMYTRFAFKNETSLPVAKQSKGKSKSVKEDVSNL------------------ATS 1501 Query 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 ASFDN D Q Y LKV PD ++ Y Sbjct 1502 SKASFDNL----------TDFEQW--YDSNIYESLKVQESPD--------NFDKYVSF-- 1539 Query 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 T + + P T +R + S + + F + D Sbjct 1540 ----------------TTKEDSKLPLTLKVRGIKSVVDFRSKDGFIYKLTPDTD------ 1577 Query 2041 CEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVGDIILKPANNSLKITEEVG 2091 PV V++ +++ +E N + + + A N +K+ +++G Sbjct 1578 ENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNYYSKSLHIPTFWENAENFVKMGDKIG 1637 Query 2092 HTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVS 2151 + ++ + KPN L R+ + A G + V + I A +KV Sbjct 1638 GVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGG 1692 Query 2152 TTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRIKASMPTTIAKNT 2202 +T + +C P F TL+ L F +++ + AS T + K Sbjct 1693 GVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVV 1752 Query 2203 VKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSY 2262 + ++ +I+WF+ S ++++ + + L S Sbjct 1753 LATL----------------------LIVWFVYTS---NPVMFTGIRV---LDFLFEGSL 1784 Query 2263 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFG 2322 C Y++ +S + YC C VCL DSL Y +++ A G Sbjct 1785 CGPYKDYGKDS--FDVLRYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKD-----AASG 1837 Query 2323 LVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAM 2380 + W Y++F F V G I Y + + NS ++ + + + + Sbjct 1838 FIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTGVCFLDWF-VQTV 1891 Query 2381 VRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 2435 + F + +Y W Y VH + C TC +C + R+ R E + +V G ++ + Sbjct 1892 FSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVH 1951 Query 2436 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 2495 VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD Sbjct 1952 VYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEAC 2011 Query 2496 VKNGSIHLYFDK-AGQKTYERHSLSHFVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESS 2553 + + ++L + K ++ F D L+ A K +L I DG C S Sbjct 2012 LVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQS 2071 Query 2554 A------KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 2607 A K+A++YY+Q +C+PIL+LDQAL + P+ Sbjct 2072 AHALEEAKNAAIYYAQYLCKPILILDQAL---------------------YEQLVVEPVS 2110 Query 2608 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 2667 K +++ + L+ +S+D + + + + S + ++ V+ H D++ TG Sbjct 2111 K--SVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVDYTG 2168 Query 2668 DSCNNYMLTY-NKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 2726 D N + +Y +TPRD G I+ A N +V + ++W + + LS+ Sbjct 2169 DGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAP--PVVWKFSELIKLSDSCL 2226 Query 2727 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL--KGGKIVN---NWLKQLIKVTLVFL 2781 K + SA K+ + F +T + +QV+ T K+ + K G IV+ K K L+F Sbjct 2227 KYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKCFKSYFKWLLIFY 2286 Query 2782 F-----VAAIFYLITPVHVMSKHTDFSS--EIIGYKAIDGGVTRDIASTDTCFANKHADF 2834 + +Y+ + D +S + G+K ID GV R+I DTCF+NK +F Sbjct 2287 ILFTACCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVPEDTCFSNKFVNF 2346 Query 2835 DTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNG-DFLH---------F 2884 D ++ G Y N + CP++ AVI + G V G+PG + +G F+H + Sbjct 2347 DAFW---GRPYDNSRNCPIVTAVIDGD-GTVATGVPGFVSWVMDGVMFIHMTQTERKPWY 2402 Query 2885 LPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYD-TNVLEGSV 2943 +P F+ + YT +I F TS + +A C ++ AS P YC++ N G++ Sbjct 2403 IPTWFNRE-IVGYTQDSIITEGSFYTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGAL 2460 Query 2944 AYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGR 3003 + S+ P Y +G + P L V DS YCR CE + G CVS + + Sbjct 2461 PFGSIIPHRVYFQPNGVRLIVPQQILHTPYVVKFVSDS-YCRGSVCEYTRPGYCVSLNPQ 2519 Query 3004 WVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYY 3063 WVL ND Y S PGVFCG L+ +M + + +I + ++ +VV + Sbjct 2520 WVLFNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAM 2578 Query 3064 FMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFL 3123 ++F+ F Y+ V L+++++ +LC+ S L + V+Y Y + + + + Sbjct 2579 VIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVII 2638 Query 3124 AHIQWMVMFTPLVPFWITIAY---IICISTKHFYWFFSNYLKRRVVFNGVSF-STFEEAA 3179 H + F +VP W+ Y II + T F W + R +++G F ++ AA Sbjct 2639 MHCWLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKLYDGNEFVGNYDLAA 2698 Query 3180 LCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALN 3239 TF++ ++KL +++ ++ YL+ Y + KY+SG Y +A LA AL+ Sbjct 2699 KSTFVIRGSEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALD 2755 Query 3240 DFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVV 3299 + NSG +++Y PP+ SI + LQSGF+K+ PS VE C+V V+ LNGLWL D + Sbjct 2756 QYRNSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTI 2815 Query 3300 YCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRVIGHSMQNCVLKLKVDTAN 3358 YCPRHV+ + D+L +NH F V + V L V+ ++ VL L+ AN Sbjct 2816 YCPRHVL---GKFSGDQWNDVLNLANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVAN 2872 Query 3359 PKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYD 3418 +TPKYKF++ G +F++ Y G+ G+Y MR N TI+ SFL G+CGSVGFNI+ Sbjct 2873 AETPKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKG 2932 Query 3419 CVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVING 3478 V+F YMHH+ELP +H GTDL G FYG +VD + AQ D +T N++AWLYAA+I+ Sbjct 2933 VVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISV 2992 Query 3479 DRW------FLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLK 3532 +L T +++D+N A + P + + LSA TG+ V + ++ Sbjct 2993 KESSFSLPKWLESTTVSVDDYNKWAGDNGFTPFSTST--AITKLSAITGVDVCKLLRTIM 3050 Query 3533 ELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHW---LLLTILT 3589 + + G ILG EDE TP V Q GV QS+ R + W +L L Sbjct 3051 -VKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSFVRKAT-SWFWSRCVLACFLF 3108 Query 3590 SLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATV-- 3647 L +V T L F++Y L A+ I+ + VKH A++ FLLP+L TV Sbjct 3109 VLCAIVLFTAVPLKFYVYAAVILLMAVLFISFT------VKHVMAYMDTFLLPTLITVII 3162 Query 3648 ---AYFNMVY--MPASWVMRIMTWLDM--VDTSL----------SGFK-LKDCVMYASAV 3689 A +Y + + V+ + W D DT + + FK ++ C M + Sbjct 3163 GVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMFLPLVLYTAFKCVQGCYMNSFNT 3222 Query 3690 VLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVT 3749 LL+L + ++T N LT + GN W L + Sbjct 3223 SLLMLYQFVKL----GFVIYTSSNTLTAYTE---GN--------WELFFELVHTTVLANV 3267 Query 3750 TVMFLARGIVFMC----VEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFR 3805 + L VF C + YC ++ L +M+ +G+ CTCYFGL+ +N+ F Sbjct 3268 SSNSLIGLFVFKCAKWMLYYCNATYLNNYVLMAVMV--NCIGWLCTCYFGLYWWVNKVFG 3325 Query 3806 LTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDV 3865 LTLG Y++ VS ++RYM + PPK + F NI + G+GG + +ATVQ+K+SDV Sbjct 3326 LTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQGIGGDRVLPIATVQAKLSDV 3385 Query 3866 KCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAV 3925 KCT+VVL+ +L +L VE++SK+ V+LHN IL + D E + ++ +L L + + Sbjct 3386 KCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTI 3445 Query 3926 DINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVAN----GDSEVVLKKLK 3981 D+++ C+++L LQ++ EFS +PSYA + A+ YE+ + + G ++ L + Sbjct 3446 DLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEKVLVDSKNGGVTQQELAAYR 3505 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4041 K+ N+AKS FDRD A+Q+KL+ MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K+D Sbjct 3506 KAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKID 3565 Query 4042 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQV 4101 ++ LN + + A G VPL +P+ + KL +VIPD T+ +G TY++ +W I V Sbjct 3566 SEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNIDTV 3625 Query 4102 VDADSKIVQLSEISMD-----NSPNLAWPLIVTALRANS---AVKLQNNELSPVALRQMS 4153 +DAD + + + N+AWPL V R V LQNNEL P ++ + Sbjct 3626 IDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNKVDVVLQNNELMPHGVKTKA 3685 Query 4154 CAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPC 4213 C AG Q C+ ++ YY G V A+ S +LK A F G IY +L+PPC Sbjct 3686 CVAGVDQAHCSVES-KCYYTNISGNSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDPPC 3743 Query 4214 RFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFCAF 4272 +F +V YLYFIK ++ RGMVLG+++ V LQ+ G+ TE +LS C+F Sbjct 3744 KFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSF 3803 Query 4273 AVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRC 4332 AVD A Y Y+A+G QP+ NCVKML H G+G AIT P DQ+S+GGAS CLYCR Sbjct 3804 AVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRA 3863 Query 4333 HIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLRE 4388 HI HP N G C KG +VQIPTT DPVGF L+N VCTVC W GYGC CD LR+ Sbjct 3864 HIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSLRQ 3922 Query 4389 PM--LQSA-----DAQSFLN 4401 P +QS +++LN Sbjct 3923 PKSSVQSVAGASDFDKNYLN 3942 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 119/328 (36%), Gaps = 29/328 (9%) Query 925 YPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL--DD 982 P + E+ Q E D A + EE +E L Sbjct 909 EPVENSTGSSKTMTEQVVVEDQELPVVEQDQDVVVYTPTDLEVAKETAEEVDEFILIFAV 968 Query 983 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPV---VQTIEVNSFSGYLKLTDNVY 1039 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ Sbjct 969 PKEEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLT 1024 Query 1040 IKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKV 1099 + A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1025 VVIAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ- 1080 Query 1100 GGSCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGA 1156 V C+ +VVGP + L +AY+N V+ + P+LS GIFG Sbjct 1081 --RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV 1138 Query 1157 D---PIHSLRVCVDTVRTNVYLAVFDKNLYDKL------VSSFL--EMKSEKQVEQKIAE 1205 D I ++R + V L + D + +L + + + K + Sbjct 1139 DFKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGD 1198 Query 1206 IPKEEVKPFITESKPSVEQRKQDDKKIK 1233 + + + +D + + Sbjct 1199 SLGQFGQVYAKNKIVFTADDVEDKEILY 1226 Score = 45.1 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 63/488 (13%), Positives = 145/488 (30%), Gaps = 50/488 (10%) Query 553 ETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQW 612 T + +R+ Q A + D S ++ + + LA + + V Sbjct 430 ATIADVLRLFQSARVIAEDVWSSFTEKSFE----FWKLAYGKVRNLEEFVKTYVCKAQMS 485 Query 613 LTNIFGTVYEKLKPVLDWLEEKF----KEGVEFLRDGWEIVKFISTCACEIVGGQIVTCA 668 + + + E + ++ + K + V+F W+ A IV Sbjct 486 IVILAAVLGEDIWHLVSQVIYKLGVLFTKVVDFCDKHWKGFCVQLKRAKLIVTETFCVLK 545 Query 669 KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETG 728 + Q ++ L ++ + G+++ E Sbjct 546 GVAQHCFQLLLDAIHSLYK------SFKKCALGRIHG--DLLFWKGGVHKIVQDGDEIWF 597 Query 729 LLMPLKAPKEIIFLEGETLPTEVLTEEVVLKT--GDLQPLEQPTSEAVEAPLVGTPVCIN 786 + +++ ++ +++ EV + + + G + +E Sbjct 598 DAIDSVDVEDLGVVQEKSIDFEVCDDVTLPENQPGHMVQIEDDGKNY------------- 644 Query 787 GLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQ--GYKSVNITFE 844 + KD Y + N VTFG+ TV E+ + ++ E Sbjct 645 -MFFRFKKDENIYYTPMSQLGAINVVCK---AGGKTVTFGETTVQEIPPPDVVPIKVSIE 700 Query 845 LD-ERIDKVLNEKCSA-YTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSM 902 E + + + V+ V + V + + + +L ++ Sbjct 701 CCGEPWNTIFKKAYKEPIEVDTDLTVEQLLSV----IYEKMCDDLKLFPEAPEPPPFENV 756 Query 903 ATYYLFDESGEFKLASHMYC-----SFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQG 957 A + + + H+ +ED EE D + E E E+D Sbjct 757 ALVDKNGKDLDCIKSCHLIYRDYESDDDIEEEDAEECDTDSGEAEECDTNSECEEEDEDT 816 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 K L A+++ +ED+ + + +D + + + V E + Sbjct 817 KVLALIQDPASIKYPLPLDEDYSVYNG--CIVHKDALDVVNLPSGEETFVVNNCFEGAVK 874 Query 1018 PVVQTIEV 1025 P+ Q + Sbjct 875 PLPQKVVD 882 >sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 SV=1 Length=6629 Score = 2687 bits (6966), Expect = 0.0, Method: Composition-based stats. Identities = 861/2960 (29%), Positives = 1365/2960 (46%), Gaps = 317/2960 (11%) Query 1566 RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDD 1625 + ++ T D + + V+ + G QFG Y V + + + YV D Sbjct 1176 KQKTIYLTEDGVKYRSIVLKPGDSLG-QFGQVYAKNKIV--FTADDVEDKEILYVPTTDK 1232 Query 1626 TLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQ 1685 ++ Y+ D Y+ L +KW + ++W D NC++++A++ LQ Sbjct 1233 SIL-----EYYGLDAQKYVIYLQTL--AQKWNVQYRDNFLILEWRDGNCWISSAIVLLQA 1285 Query 1686 IELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCK 1745 +++F L +A+ + G+ +F A A C VG+ D ++ L +H + D Sbjct 1286 AKIRFK-GFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTN 1344 Query 1746 RVLNV-VCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 1803 L V CG + L+G+EA + + + FK TCG T +++ P Sbjct 1345 AFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLP 1404 Query 1804 FVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSKETLYCIDGALLTKSSEYK 1860 ++++ A PA + + G+ GH Y D + K Sbjct 1405 YLLLFATDGPATVDCDEDAVGT-VVFVGSTNSGHCYTQA----AGQAFDNLAKDRKFGKK 1459 Query 1861 GPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPY 1920 P Y ++ K + + N Sbjct 1460 SPYITAMYTRFAFKNETSLPVAKQSKGKSKSVKEDVSNL------------------ATS 1501 Query 1921 PNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFK 1980 ASFDN D Q Y LKV PD ++ Y Sbjct 1502 SKASFDNL----------TDFEQW--YDSNIYESLKVQESPD--------NFDKYVSF-- 1539 Query 1981 KGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLA 2040 T + + P T +R + S + + F + D Sbjct 1540 ----------------TTKEDSKLPLTLKVRGIKSVVDFRSKDGFIYKLTPDTD------ 1577 Query 2041 CEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVGDIILKPANNSLKITEEVG 2091 PV V++ +++ +E N + + + A N +K+ +++G Sbjct 1578 ENSKAPVYYPVLDAISLKAIWVEGNANFVVGHPNYYSKSLHIPTFWENAENFVKMGDKIG 1637 Query 2092 HTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVS 2151 + ++ + KPN L R+ + A G + V + I A +KV Sbjct 1638 GVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQCGKLIGKAATFIADKVGG 1692 Query 2152 TTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTRSTNSRIKASMPTTIAKNT 2202 +T + +C P F TL+ L F +++ + AS T + K Sbjct 1693 GVVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVV 1752 Query 2203 VKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSY 2262 + ++ +I+WF+ S ++++ + + L S Sbjct 1753 LATL----------------------LIVWFVYTS---NPVMFTGIRV---LDFLFEGSL 1784 Query 2263 CTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFG 2322 C Y++ +S + YC C VCL DSL Y +++ A G Sbjct 1785 CGPYKDYGKDS--FDVLRYCADDFICRVCLHDKDSLHLYKHAYSVEQVYKD-----AASG 1837 Query 2323 LVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAM 2380 + W Y++F F V G I Y + + NS ++ + + + + Sbjct 1838 FIFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLNSTVLQTGVCFLDWF-VQTV 1891 Query 2381 VRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFY 2435 + F + +Y W Y VH + C TC +C + R+ R E + +V G ++ + Sbjct 1892 FSHFNFMGAGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVH 1951 Query 2436 VYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVT 2495 VY N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + ++VD Sbjct 1952 VYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEAC 2011 Query 2496 VKNGSIHLYFDK-AGQKTYERHSLSHFVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESS 2553 + + ++L + K ++ F D L+ A K +L I DG C S Sbjct 2012 LVDDFVNLKYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQS 2071 Query 2554 A------KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPME 2607 A K+A++YY+Q +C+PIL+LDQAL + P+ Sbjct 2072 AHALEEAKNAAIYYAQYLCKPILILDQAL---------------------YEQLVVEPVS 2110 Query 2608 KLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTG 2667 K +++ + L+ +S+D + + + + S + ++ V+ H D++ TG Sbjct 2111 K--SVIDKVCSILSSIISVDTAALNYKAGTLRDALLSITKDEEAVDMAIFCHNHDVDYTG 2168 Query 2668 DSCNNYMLTY-NKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLR 2726 D N + +Y +TPRD G I+ A N +V + ++W + + LS+ Sbjct 2169 DGFTNVIPSYGIDTGKLTPRDRGFLINADASIANLRVKNAP--PVVWKFSELIKLSDSCL 2226 Query 2727 KQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL--KGGKIVN---NWLKQLIKVTLVFL 2781 K + SA K+ + F +T + +QV+ T K+ + K G IV+ K K L+F Sbjct 2227 KYLISATVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKCFKSYFKWLLIFY 2286 Query 2782 F-----VAAIFYLITPVHVMSKHTDFSS--EIIGYKAIDGGVTRDIASTDTCFANKHADF 2834 + +Y+ + D +S + G+K ID GV R+I DTCF+NK +F Sbjct 2287 ILFTACCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVPEDTCFSNKFVNF 2346 Query 2835 DTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNG-DFLH---------F 2884 D ++ G Y N + CP++ AVI + G V G+PG + +G F+H + Sbjct 2347 DAFW---GRPYDNSRNCPIVTAVIDGD-GTVATGVPGFVSWVMDGVMFIHMTQTERKPWY 2402 Query 2885 LPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYD-TNVLEGSV 2943 +P F+ + YT +I F TS + +A C ++ AS P YC++ N G++ Sbjct 2403 IPTWFNRE-IVGYTQDSIITEGSFYTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGAL 2460 Query 2944 AYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGR 3003 + S+ P Y +G + P L V DS YCR CE + G CVS + + Sbjct 2461 PFGSIIPHRVYFQPNGVRLIVPQQILHTPYVVKFVSDS-YCRGSVCEYTRPGYCVSLNPQ 2519 Query 3004 WVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYY 3063 WVL ND Y S PGVFCG L+ +M + + +I + ++ +VV + Sbjct 2520 WVLFNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAM 2578 Query 3064 FMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFL 3123 ++F+ F Y+ V L+++++ +LC+ S L + V+Y Y + + + + Sbjct 2579 VIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVII 2638 Query 3124 AHIQWMVMFTPLVPFWITIAY---IICISTKHFYWFFSNYLKRRVVFNGVSF-STFEEAA 3179 H + F +VP W+ Y II + T F W + R +++G F ++ AA Sbjct 2639 MHCWLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKLYDGNEFVGNYDLAA 2698 Query 3180 LCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALN 3239 TF++ ++KL +++ ++ YL+ Y + KY+SG Y +A LA AL+ Sbjct 2699 KSTFVIRGSEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALD 2755 Query 3240 DFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVV 3299 + NSG +++Y PP+ SI + LQSGF+K+ PS VE C+V V+ LNGLWL D + Sbjct 2756 QYRNSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTI 2815 Query 3300 YCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRVIGHSMQNCVLKLKVDTAN 3358 YCPRHV+ + D+L +NH F V + V L V+ ++ VL L+ AN Sbjct 2816 YCPRHVL---GKFSGDQWNDVLNLANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVAN 2872 Query 3359 PKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYD 3418 +TPKYKF++ G +F++ Y G+ G+Y MR N TI+ SFL G+CGSVGFNI+ Sbjct 2873 AETPKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKG 2932 Query 3419 CVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVING 3478 V+F YMHH+ELP +H GTDL G FYG +VD + AQ D +T N++AWLYAA+I+ Sbjct 2933 VVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISV 2992 Query 3479 DRW------FLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLK 3532 +L T +++D+N A + P + + LSA TG+ V + ++ Sbjct 2993 KESSFSLPKWLESTTVSVDDYNKWAGDNGFTPFSTST--AITKLSAITGVDVCKLLRTIM 3050 Query 3533 ELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHW---LLLTILT 3589 + + G ILG EDE TP V Q GV QS+ R + W +L L Sbjct 3051 -VKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSFVRKAT-SWFWSRCVLACFLF 3108 Query 3590 SLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATV-- 3647 L +V T L F++Y L A+ I+ + VKH A++ FLLP+L TV Sbjct 3109 VLCAIVLFTAVPLKFYVYAAVILLMAVLFISFT------VKHVMAYMDTFLLPTLITVII 3162 Query 3648 ---AYFNMVY--MPASWVMRIMTWLDM--VDTSL----------SGFK-LKDCVMYASAV 3689 A +Y + + V+ + W D DT + + FK ++ C M + Sbjct 3163 GVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMFLPLVLYTAFKCVQGCYMNSFNT 3222 Query 3690 VLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVT 3749 LL+L + ++T N LT + GN W L + Sbjct 3223 SLLMLYQFVKL----GFVIYTSSNTLTAYTE---GN--------WELFFELVHTTVLANV 3267 Query 3750 TVMFLARGIVFMC----VEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFR 3805 + L VF C + YC ++ L +M+ +G+ CTCYFGL+ +N+ F Sbjct 3268 SSNSLIGLFVFKCAKWMLYYCNATYLNNYVLMAVMV--NCIGWLCTCYFGLYWWVNKVFG 3325 Query 3806 LTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDV 3865 LTLG Y++ VS ++RYM + PPK + F NI + G+GG + +ATVQ+K+SDV Sbjct 3326 LTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQGIGGDRVLPIATVQAKLSDV 3385 Query 3866 KCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAV 3925 KCT+VVL+ +L +L VE++SK+ V+LHN IL + D E + ++ +L L + + Sbjct 3386 KCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTI 3445 Query 3926 DINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVAN----GDSEVVLKKLK 3981 D+++ C+++L LQ++ EFS +PSYA + A+ YE+ + + G ++ L + Sbjct 3446 DLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEKVLVDSKNGGVTQQELAAYR 3505 Query 3982 KSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4041 K+ N+AKS FDRD A+Q+KL+ MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K+D Sbjct 3506 KAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKID 3565 Query 4042 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQV 4101 ++ LN + + A G VPL +P+ + KL +VIPD T+ +G TY++ +W I V Sbjct 3566 SEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNIDTV 3625 Query 4102 VDADSKIVQLSEISMD-----NSPNLAWPLIVTALRANS---AVKLQNNELSPVALRQMS 4153 +DAD + + + N+AWPL V R V LQNNEL P ++ + Sbjct 3626 IDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNKVDVVLQNNELMPHGVKTKA 3685 Query 4154 CAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPC 4213 C AG Q C+ ++ YY G V A+ S +LK A F G IY +L+PPC Sbjct 3686 CVAGVDQAHCSVES-KCYYTNISGNSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDPPC 3743 Query 4214 RFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFCAF 4272 +F +V YLYFIK ++ RGMVLG+++ V LQ+ G+ TE +LS C+F Sbjct 3744 KFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSF 3803 Query 4273 AVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRC 4332 AVD A Y Y+A+G QP+ NCVKML H G+G AIT P DQ+S+GGAS CLYCR Sbjct 3804 AVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRA 3863 Query 4333 HIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLRE 4388 HI HP N G C KG +VQIPTT DPVGF L+N VCTVC W GYGC CD LR+ Sbjct 3864 HIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSLRQ 3922 Query 4389 PM--LQSA-----DAQSFLN 4401 P +QS +++LN Sbjct 3923 PKSSVQSVAGASDFDKNYLN 3942 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 119/328 (36%), Gaps = 29/328 (9%) Query 925 YPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWL--DD 982 P + E+ Q E D A + EE +E L Sbjct 909 EPVENSTGSSKTMTEQVVVEDQELPVVEQDQDVVVYTPTDLEVAKETAEEVDEFILIFAV 968 Query 983 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPV---VQTIEVNSFSGYLKLTDNVY 1039 ++ V Q+DG++ Q + I V+PQ E + T E F Y ++ Sbjct 969 PKEEVVSQKDGAQIKQ----EPIQVVKPQREKKAKKFKVKPATCEKPKFLEYKTCVGDLT 1024 Query 1040 IKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKV 1099 + A ++E K+ +VNAAN ++ HG GVA A+ +DY+ +GP + Sbjct 1025 VVIAKALDEFKEF---CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ- 1080 Query 1100 GGSCVLSGHNLAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGA 1156 V C+ +VVGP + L +AY+N V+ + P+LS GIFG Sbjct 1081 --RLVTPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV 1138 Query 1157 D---PIHSLRVCVDTVRTNVYLAVFDKNLYDKL------VSSFL--EMKSEKQVEQKIAE 1205 D I ++R + V L + D + +L + + + K + Sbjct 1139 DFKMSIDAMREAFEGCTIRVLLFSLSQEHIDYFDVTCKQKTIYLTEDGVKYRSIVLKPGD 1198 Query 1206 IPKEEVKPFITESKPSVEQRKQDDKKIK 1233 + + + +D + + Sbjct 1199 SLGQFGQVYAKNKIVFTADDVEDKEILY 1226 Score = 45.1 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 63/488 (13%), Positives = 145/488 (30%), Gaps = 50/488 (10%) Query 553 ETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQW 612 T + +R+ Q A + D S ++ + + LA + + V Sbjct 430 ATIADVLRLFQSARVIAEDVWSSFTEKSFE----FWKLAYGKVRNLEEFVKTYVCKAQMS 485 Query 613 LTNIFGTVYEKLKPVLDWLEEKF----KEGVEFLRDGWEIVKFISTCACEIVGGQIVTCA 668 + + + E + ++ + K + V+F W+ A IV Sbjct 486 IVILAAVLGEDIWHLVSQVIYKLGVLFTKVVDFCDKHWKGFCVQLKRAKLIVTETFCVLK 545 Query 669 KEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETG 728 + Q ++ L ++ + G+++ E Sbjct 546 GVAQHCFQLLLDAIHSLYK------SFKKCALGRIHG--DLLFWKGGVHKIVQDGDEIWF 597 Query 729 LLMPLKAPKEIIFLEGETLPTEVLTEEVVLKT--GDLQPLEQPTSEAVEAPLVGTPVCIN 786 + +++ ++ +++ EV + + + G + +E Sbjct 598 DAIDSVDVEDLGVVQEKSIDFEVCDDVTLPENQPGHMVQIEDDGKNY------------- 644 Query 787 GLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQ--GYKSVNITFE 844 + KD Y + N VTFG+ TV E+ + ++ E Sbjct 645 -MFFRFKKDENIYYTPMSQLGAINVVCK---AGGKTVTFGETTVQEIPPPDVVPIKVSIE 700 Query 845 LD-ERIDKVLNEKCSA-YTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSM 902 E + + + V+ V + V + + + +L ++ Sbjct 701 CCGEPWNTIFKKAYKEPIEVDTDLTVEQLLSV----IYEKMCDDLKLFPEAPEPPPFENV 756 Query 903 ATYYLFDESGEFKLASHMYC-----SFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQG 957 A + + + H+ +ED EE D + E E E+D Sbjct 757 ALVDKNGKDLDCIKSCHLIYRDYESDDDIEEEDAEECDTDSGEAEECDTNSECEEEDEDT 816 Query 958 KPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELT 1017 K L A+++ +ED+ + + +D + + + V E + Sbjct 817 KVLALIQDPASIKYPLPLDEDYSVYNG--CIVHKDALDVVNLPSGEETFVVNNCFEGAVK 874 Query 1018 PVVQTIEV 1025 P+ Q + Sbjct 875 PLPQKVVD 882 >sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=1a PE=1 SV=1 Length=3953 Score = 2674 bits (6931), Expect = 0.0, Method: Composition-based stats. Identities = 866/2983 (29%), Positives = 1375/2983 (46%), Gaps = 321/2983 (11%) Query 1550 VITFDNLKTLLSLREV--RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKI 1607 V+ F + + + + ++ T D + + V+ + G QFG + V Sbjct 1160 VLLFSLSQEHIDYFDATCKQKTIYLTEDGVKYRSVVLKPGDSLG-QFGQVFARNKVV--- 1215 Query 1608 KPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSI 1667 + E K +P D +E Y+ D Y+ L +KW + + Sbjct 1216 FSADDVEDKEILFIPTTDKTILE----YYGLDAQKYVTYLQTL--AQKWDVQYRDNFVIL 1269 Query 1668 KWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGD 1727 +W D NC++++A++ LQ +++F L +A+ + G+ +F A A CN VG+ D Sbjct 1270 EWRDGNCWISSAIVLLQAAKIRFK-GFLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSD 1328 Query 1728 VRETMSYLFQHANLDSCKRVLN-VVCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQI 1785 ++ L +H + D +L V CG + L+G+EA + + + FK Sbjct 1329 ANWLLANLAEHFDADYTNALLKKCVSCNCGVKSYELRGLEACIQPVRAPNLLHFKTQYSN 1388 Query 1786 PCTCGKQATKYLVQQESPFVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSK 1842 TCG +T +++ P++++ A PA + + G+ GH Y K Sbjct 1389 CPTCGASSTDEVIEASLPYLLLFATDGPATVDCDENAVGT-VVFIGSTNSGHCYTQADGK 1447 Query 1843 ETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKK 1902 D + K P Y S + + + + + N Sbjct 1448 A----FDNLAKDRKFGRKSPYITAMYTRFSLRSENPLLVVEHSKGKAKVVKEDVSNL--- 1500 Query 1903 DNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPD 1962 ASFD+ D Q Y LKV PD Sbjct 1501 ---------------ATSSKASFDDL----------TDFEQW--YDSNIYESLKVQETPD 1533 Query 1963 LNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETS 2022 + Y T + + P T +R + S + Sbjct 1534 --------NLDEYVSF------------------TTKEDSKLPLTLKVRGIKSVVDFRSK 1567 Query 2023 NSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVG 2073 + F + D PV V+++ +++ +E + + + Sbjct 1568 DGFTYKLTPDTD------ENSKTPVYYPVLDSISLRAIWVEGSANFVVGHPNYYSKSLRI 1621 Query 2074 DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSV 2133 + A + +K+ ++ + ++ + KPN L R+ + A G + V + Sbjct 1622 PTFWENAESFVKMGYKIDGVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQ 1676 Query 2134 PWDTIANYAKPFLNKVVSTTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTR 2184 + A +KV +T + +C F TL+ F + Sbjct 1677 CGKILVKAATYVADKVGDGVVRNITDRIKGLCGFTRGHFEKKMSLQFLKTLVFFFFYFLK 1736 Query 2185 STNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLI 2244 +++ + +S + K ++ +I+WF+ S ++ Sbjct 1737 ASSKSLVSSYKIVLCKVVFATL----------------------LIVWFIYTS---NPVV 1771 Query 2245 YSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSL 2304 ++ + + L S C Y + +S + YC G C VCL DSL Y Sbjct 1772 FTGIRV---LDFLFEGSLCGPYNDYGKDS--FDVLRYCAGDFTCRVCLHDRDSLHLYKHA 1826 Query 2305 ETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNS 2362 +++ A G+ W Y++F F V G I Y + + +S Sbjct 1827 YSVEQIYKD-----AASGINFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLSS 1876 Query 2363 WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNR 2417 ++ + + + + + F + +Y W Y VH + C TC +C + R Sbjct 1877 TVLQTGVGFLDWF-VKTVFTHFNFMGAGFYFWLFYKIYVQVHHILYCKDVTCEVCKRVAR 1935 Query 2418 ATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQF 2477 + R E + +V G ++ +VY N G FCK HNW C NCD + +TF+S EVA +LS + Sbjct 1936 SNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKL 1995 Query 2478 KRPINPTDQSSYIVDSVTVKNGSIHLYFDKA-GQKTYERHSLSHFVNLDNLR-ANNTKGS 2535 KR + PT + ++V V + ++L + A K ++ F D L+ A K + Sbjct 1996 KRHVKPTAYAYHVVYEACVVDDFVNLKYKAAIPGKDNASSAVKCFSVTDFLKKAVFLKEA 2055 Query 2536 LPINVIVFDGKSKCEESSA------KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVK 2589 L I DG C SA K+A+VYY+Q +C+PIL+LDQAL Sbjct 2056 LKCEQISNDGFIVCNTQSAHALEEAKNAAVYYAQYLCKPILILDQAL------------- 2102 Query 2590 MFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETK 2649 + P+ K +++ + L+ +S+D + + + + S + + Sbjct 2103 --------YEQLIVEPVSK--SVIDKVCSILSNIISVDTAALNYKAGTLRDALLSITKDE 2152 Query 2650 DVVECLKLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHN 2708 + V+ H ++E TGD N + +Y + +TPRD G I+ A N +V + Sbjct 2153 EAVDMAIFCHNHEVEYTGDGFTNVIPSYGMDTDKLTPRDRGFLINADASIANLRVKNAP- 2211 Query 2709 IALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL--KGGKIV 2766 ++W D + LS+ K + SA K+ F +T + +QV++ T K+ + K G ++ Sbjct 2212 -PVVWKFSDLIKLSDSCLKYLISATVKSGGRFFITKSGAKQVISCHTQKLLVEKKAGGVI 2270 Query 2767 NN---WLKQLIKVTLVFLF-----VAAIFYLITPVHVMSKHTDFSS--EIIGYKAIDGGV 2816 NN W K VF +Y+ + D +S + G+K ID GV Sbjct 2271 NNTFKWFMSCFKWLFVFYILFTACCLGYYYMEMNKSFVHPMYDVNSTLHVEGFKVIDKGV 2330 Query 2817 TRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 R+I S D CF+NK +FD ++ G SY N+K CP++ VI + G V G+PG + Sbjct 2331 IREIVSEDNCFSNKFVNFDAFW---GKSYENNKNCPIVTVVIDGD-GTVAVGVPGFVSWV 2386 Query 2877 TNG-DFLH---------FLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDAS 2926 +G F+H ++P F+ + YT +I F TS + +A C ++ AS Sbjct 2387 MDGVMFVHMTQTDRRPWYIPTWFNRE-IVGYTQDSIITEGSFYTSIALFSARC-LYLTAS 2444 Query 2927 GKPVPYCYD-TNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCR 2985 P YC++ N G++ + S+ P Y +G + P L V DS YCR Sbjct 2445 NTPQLYCFNGDNDAPGALPFGSIIPHRVYFQPNGVRLIVPQQILHTPYIVKFVSDS-YCR 2503 Query 2986 HGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISA 3045 CE ++ G CVS +WVL ND Y S PGVFCG L+ NM + + +I Sbjct 2504 GSVCEYTKPGYCVSLDSQWVLFNDEYISKPGVFCGSTVRELMFNMVSTFFTGVNP-NIYI 2562 Query 3046 SIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVY 3105 + ++ +V+ + ++F+ F Y+ +V L+++++ VLC+ S L + Sbjct 2563 QLATMFLILVVIVLIFAMVIKFQGVFKAYATIVFTIMLVWVINAFVLCVHSYNSVLAVIL 2622 Query 3106 SVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAY---IICISTKHFYWFFSNYLK 3162 V+Y Y + + + + + H + F +VP W+ Y I+ + T +W + Sbjct 2623 LVLYCYASMVTSRNTAIIMHCWLVFTFGLIVPTWLACCYLGFILYMYTPLVFWCYGTTKN 2682 Query 3163 RRVVFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAM 3221 R +++G F ++ AA TF++ ++KL +++ ++ YL+ Y + KY+SG Sbjct 2683 TRKLYDGNEFVGNYDLAAKSTFVIRGTEFVKLTNEIG---DKFEAYLSAYARLKYYSGTG 2739 Query 3222 DTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMV 3281 Y +A LA AL+ + NSG +V+Y PP+ SI + LQ+GF+K+ PS VE C+V Sbjct 2740 SEQDYLQACRAWLAYALDQYRNSGVEVVYTPPRYSIGVSRLQAGFKKLVSPSSAVEKCIV 2799 Query 3282 QVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRV 3340 V+ LNGLWL D +YCPRHV+ + D+L +NH F V N V L V Sbjct 2800 SVSYRGNNLNGLWLGDSIYCPRHVL---GKFSGDQWGDVLNLANNHEFEVVTQNGVTLNV 2856 Query 3341 IGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIK 3400 + ++ VL L+ AN +TPKYKFV+ G +F++ Y G+ G+Y MR N TI+ Sbjct 2857 VSRRLKGAVLILQTAVANAETPKYKFVKANCGDSFTIACSYGGTVIGLYPVTMRSNGTIR 2916 Query 3401 GSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTD 3460 SFL G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G FYG +VD + AQ D Sbjct 2917 ASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPD 2976 Query 3461 TTITVNVLAWLYAAVIN-------GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDIL 3513 +T N++AWLYAA+I+ +W L T ++ D+N A + P + + Sbjct 2977 NLVTNNIVAWLYAAIISVKESSFSQPKW-LESTTVSIEDYNRWASDNGFTPFSTST--AI 3033 Query 3514 GPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVK 3573 LSA TG+ V + ++ + ILG EDE TP V Q GV QS+ Sbjct 3034 TKLSAITGVDVCKLLRTIM-VKSAQWGSDPILGQYNFEDELTPESVFNQVGGVRLQSSFV 3092 Query 3574 RTIKGTHHW---LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVK 3630 R + W +L L L +V T L F+++ L A+ I+ + VK Sbjct 3093 RKAT-SWFWSRCVLACFLFVLCAIVLFTAVPLKFYVHAAVILLMAVLFISFT------VK 3145 Query 3631 HKHAFLCLFLLPSLATV-----AYFNMVY--MPASWVMRIMTWLDM--VDTSL------- 3674 H A++ FLLP+L TV A +Y + + V+ + W D DT + Sbjct 3146 HVMAYMDTFLLPTLITVIIGVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMLLPL 3205 Query 3675 ---SGFK-LKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQA 3730 + FK ++ C M + LL+L + ++T N LT + GN Sbjct 3206 VLYTAFKCVQGCYMNSFNTSLLMLYQFMKL----GFVIYTSSNTLTAYTE---GN----- 3253 Query 3731 ISMWALIISVTSNYSGVVTTVMFLARGIVFMC----VEYCPIFFITGNTLQCIMLVYCFL 3786 W L + + L IVF C + YC + L +M+ + Sbjct 3254 ---WELFFELVHTIVLANVSSNSLIGLIVFKCAKWMLYYCNATYFNNYVLMAVMV--NGI 3308 Query 3787 GYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLG 3846 G+ CTCYFGL+ +N+ F LTLG Y++ VS ++RYM + PPK + F NI + G Sbjct 3309 GWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLHKVNPPKTVWEVFTTNILIQG 3368 Query 3847 VGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTE 3906 +GG + +ATVQSK+SDVKCT+VVL+ +L +L VE++SK+ A V+LHN IL + D E Sbjct 3369 IGGDRVLPIATVQSKLSDVKCTTVVLMQLLTKLNVEANSKMHAYLVELHNKILASDDVGE 3428 Query 3907 AFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQ 3966 + ++ +L L + +D+ + C+++L LQ++ EFS +PSYA + A+ YE+ Sbjct 3429 CMDNLLGMLITLFCIDSTIDLGEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKSIYEK 3488 Query 3967 AVAN----GDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKR 4022 +A+ G ++ L +K+ N+AKS FDRD A+Q+KL+ MA++AMT MYK+AR D+R Sbjct 3489 VLADSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRR 3548 Query 4023 AKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKN 4082 AK+ S++ +LF+ML+K+D++ LN + + A G VPL +P+ + KL +VIPD T+ Sbjct 3549 AKLVSSLHALLFSMLKKIDSEKLNVLFDQANSGVVPLATVPIVCSNKLTLVIPDPETWVK 3608 Query 4083 TCDGTTFTYASALWEIQQVVDADSKIVQLSEISMD-----NSPNLAWPLIVTALRANS-- 4135 +G TY++ +W I V DAD + + + N+AWPL V R Sbjct 3609 CVEGVHVTYSTVVWNIDCVTDADGTELHPTSTGSGLTYCISGDNIAWPLKVNLTRNGHNK 3668 Query 4136 -AVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 V LQNNEL P ++ +C AG Q C+ ++ YY + G V A+ S +LK A Sbjct 3669 VDVALQNNELMPHGVKTKACVAGVDQAHCSVES-KCYYTSISGSSVVAAITSSNPNLKVA 3727 Query 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 F G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ+ Sbjct 3728 SFLNEAGN-QIYVDLDPPCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQS 3786 Query 4255 -GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3787 KGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPS 3846 Query 4314 ANMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTV 4369 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N V Sbjct 3847 PTPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKV 3905 Query 4370 CTVCGMWKGYGCSCDQLREP-------MLQSADAQSFLNGFAV 4405 CTVC W GYGC CD LR+P + S +++LNG+ V Sbjct 3906 CTVCQCWIGYGCQCDSLRQPKPSVQSVAVASGFDKNYLNGYGV 3948 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 54/263 (21%), Positives = 96/263 (37%), Gaps = 15/263 (6%) Query 933 EGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQD 992 D E+ Q + Q + A ++ E+ ++++ + Sbjct 917 SCDAMAEQAIVEEQEIVPVVEQSQDVVVFTPADLEVVKETAEEVDEFILISAVPKEEVVS 976 Query 993 GSEDNQTTTIQTIVEVQPQLEMELTPV---VQTIEVNSFSGYLKLTDNVYIKNADIVEEA 1049 ++ + + V+ Q E + T E F Y ++ + A ++E Sbjct 977 QEKEEPQVEQEPTLVVKAQREKKAKKFKVKPATCEKPKFLEYKTCVGDLAVVIAKALDEF 1036 Query 1050 KKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHN 1109 K+ +VNAAN ++ HGGGVA A+ DY+ +GP + V Sbjct 1037 KEF---CIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFV 1090 Query 1110 LAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADPIHSLRV-- 1164 C+ +VVGP + L +AY++ V+ + P+LS+GIFG D S+ Sbjct 1091 KGIQCVNNVVGPRHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGVDFKISIDAMR 1150 Query 1165 -CVDTVRTNVYLAVFDKNLYDKL 1186 V L + D Sbjct 1151 EAFKGCAIRVLLFSLSQEHIDYF 1173 Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 57/375 (15%), Positives = 113/375 (30%), Gaps = 22/375 (6%) Query 524 GEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDA 583 G I L A ++ V + + + L + D ++L Sbjct 374 GVTPEINDGLILAAIYSSFSVAELVAAIKR--GEPFKFLGHKFVYAKDAAVSFTLAKAAT 431 Query 584 MMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFK-EGVEFL 642 + L + V + + + + + ++ +G V L+ + K + V Sbjct 432 IADVLKLFQSARVKVEDVWSSLTEKSFEFWRLAYGKVRN-LEEFVKTCFCKAQMAIVILA 490 Query 643 RDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSII-IGGAKLK 701 E + + + VGG ++ + F + + + +++ + G Sbjct 491 TVLGEGIWHLVSQVIYKVGGLFTKVVDFCEKYWKGFCAQLKRAKLIVTETLCVLKGVAQH 550 Query 702 ALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTG 761 L + ++KC R LL +II EG+ + + + V G Sbjct 551 CFQLLLDAIQFMYKSFKKCALGRIHGDLLFWKGGVHKIIQ-EGDEIWFDAIDSIDVEDLG 609 Query 762 DLQPLEQPTSEAVEAPLV----GTPVCING-----LMLLEIKDTEKYCALAPNMMVTNNT 812 +Q L G V I + KD Y + N Sbjct 610 VVQEKLIDFDVCDNVTLPENQPGHMVQIEDDGKNYMFFRFKKDENIYYTPMSQLGAINVV 669 Query 813 FTLKGGAPTKVTFGDDTVIEV--QGYKSVNITFELD-ERIDKVLNEKCS-AYTVELGTEV 868 VTFG+ TV E+ + ++ E E + + + VE V Sbjct 670 CK---AGGKTVTFGETTVQEIPPPDVVFIKVSIECCGEPWNTIFKKAYKEPIEVETDLTV 726 Query 869 NEFACVVADAVIKTL 883 + VV + + L Sbjct 727 EQLLSVVYEKMCDDL 741 >sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1 Length=6631 Score = 2667 bits (6914), Expect = 0.0, Method: Composition-based stats. Identities = 864/2979 (29%), Positives = 1372/2979 (46%), Gaps = 321/2979 (11%) Query 1550 VITFDNLKTLLSLREV--RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKI 1607 V+ F + + + + ++ T D + + V+ + G QFG + V Sbjct 1160 VLLFSLSQEHIDYFDATCKQKTIYLTEDGVKYRSVVLKPGDSLG-QFGQVFARNKVV--- 1215 Query 1608 KPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSI 1667 + E K +P D +E Y+ D Y+ L +KW + + Sbjct 1216 FSADDVEDKEILFIPTTDKTILE----YYGLDAQKYVTYLQTL--AQKWDVQYRDNFVIL 1269 Query 1668 KWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGD 1727 +W D NC++++A++ LQ +++F L +A+ + G+ +F A A CN VG+ D Sbjct 1270 EWRDGNCWISSAIVLLQAAKIRFK-GFLAEAWAKLLGGDPTDFVAWCYASCNAKVGDFSD 1328 Query 1728 VRETMSYLFQHANLDSCKRVLN-VVCKTCGQQQTTLKGVEAVM-YMGTLSYEQFKKGVQI 1785 ++ L +H + D +L V CG + L+G+EA + + + FK Sbjct 1329 ANWLLANLAEHFDADYTNALLKKCVSCNCGVKSYELRGLEACIQPVRAPNLLHFKTQYSN 1388 Query 1786 PCTCGKQATKYLVQQESPFVMMSAP--PAQYELKHGTFTCASEYTGNYQCGH-YKHITSK 1842 TCG +T +++ P++++ A PA + + G+ GH Y K Sbjct 1389 CPTCGASSTDEVIEASLPYLLLFATDGPATVDCDENAVGT-VVFIGSTNSGHCYTQADGK 1447 Query 1843 ETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKK 1902 D + K P Y S + + + + + N Sbjct 1448 A----FDNLAKDRKFGRKSPYITAMYTRFSLRSENPLLVVEHSKGKAKVVKEDVSNL--- 1500 Query 1903 DNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPD 1962 ASFD+ D Q Y LKV PD Sbjct 1501 ---------------ATSSKASFDDL----------TDFEQW--YDSNIYESLKVQETPD 1533 Query 1963 LNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETS 2022 + Y T + + P T +R + S + Sbjct 1534 --------NLDEYVSF------------------TTKEDSKLPLTLKVRGIKSVVDFRSK 1567 Query 2023 NSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVK---------TTEVVG 2073 + F + D PV V+++ +++ +E + + + Sbjct 1568 DGFTYKLTPDTD------ENSKTPVYYPVLDSISLRAIWVEGSANFVVGHPNYYSKSLRI 1621 Query 2074 DIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSV 2133 + A + +K+ ++ + ++ + KPN L R+ + A G + V + Sbjct 1622 PTFWENAESFVKMGYKIDGVTMGLWRAEH----LNKPN-LERIFNIAKKAIVGSSVVTTQ 1676 Query 2134 PWDTIANYAKPFLNKVVSTTTNIVTRCLNRVC--------TNYMPYFF-TLLLQLCTFTR 2184 + A +KV +T + +C F TL+ F + Sbjct 1677 CGKILVKAATYVADKVGDGVVRNITDRIKGLCGFTRGHFEKKMSLQFLKTLVFFFFYFLK 1736 Query 2185 STNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLI 2244 +++ + +S + K ++ +I+WF+ S ++ Sbjct 1737 ASSKSLVSSYKIVLCKVVFATL----------------------LIVWFIYTS---NPVV 1771 Query 2245 YSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSL 2304 ++ + + L S C Y + +S + YC G C VCL DSL Y Sbjct 1772 FTGIRV---LDFLFEGSLCGPYNDYGKDS--FDVLRYCAGDFTCRVCLHDRDSLHLYKHA 1826 Query 2305 ETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFY--VLGLAAIMQLFFSYFAVHFISNS 2362 +++ A G+ W Y++F F V G I Y + + +S Sbjct 1827 YSVEQIYKD-----AASGINFNWNWLYLVFLILFVKPVAGFVII-----CYCVKYLVLSS 1876 Query 2363 WLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY-----VHVVDGCNSSTCMMCYKRNR 2417 ++ + + + + + F + +Y W Y VH + C TC +C + R Sbjct 1877 TVLQTGVGFLDWF-VKTVFTHFNFMGAGFYFWLFYKIYVQVHHILYCKDVTCEVCKRVAR 1935 Query 2418 ATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQF 2477 + R E + +V G ++ +VY N G FCK HNW C NCD + +TF+S EVA +LS + Sbjct 1936 SNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKL 1995 Query 2478 KRPINPTDQSSYIVDSVTVKNGSIHLYFDKA-GQKTYERHSLSHFVNLDNLR-ANNTKGS 2535 KR + PT + ++V V + ++L + A K ++ F D L+ A K + Sbjct 1996 KRHVKPTAYAYHVVYEACVVDDFVNLKYKAAIPGKDNASSAVKCFSVTDFLKKAVFLKEA 2055 Query 2536 LPINVIVFDGKSKCEESSA------KSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVK 2589 L I DG C SA K+A+VYY+Q +C+PIL+LDQAL Sbjct 2056 LKCEQISNDGFIVCNTQSAHALEEAKNAAVYYAQYLCKPILILDQAL------------- 2102 Query 2590 MFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETK 2649 + P+ K +++ + L+ +S+D + + + + S + + Sbjct 2103 --------YEQLIVEPVSK--SVIDKVCSILSNIISVDTAALNYKAGTLRDALLSITKDE 2152 Query 2650 DVVECLKLSHQSDIEVTGDSCNNYMLTYN-KVENMTPRDLGACIDCSARHINAQVAKSHN 2708 + V+ H ++E TGD N + +Y + +TPRD G I+ A N +V + Sbjct 2153 EAVDMAIFCHNHEVEYTGDGFTNVIPSYGMDTDKLTPRDRGFLINADASIANLRVKNAP- 2211 Query 2709 IALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIAL--KGGKIV 2766 ++W D + LS+ K + SA K+ F +T + +QV++ T K+ + K G ++ Sbjct 2212 -PVVWKFSDLIKLSDSCLKYLISATVKSGGRFFITKSGAKQVISCHTQKLLVEKKAGGVI 2270 Query 2767 NN---WLKQLIKVTLVFLF-----VAAIFYLITPVHVMSKHTDFSS--EIIGYKAIDGGV 2816 NN W K VF +Y+ + D +S + G+K ID GV Sbjct 2271 NNTFKWFMSCFKWLFVFYILFTACCLGYYYMEMNKSFVHPMYDVNSTLHVEGFKVIDKGV 2330 Query 2817 TRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRT 2876 R+I S D CF+NK +FD ++ G SY N+K CP++ VI + G V G+PG + Sbjct 2331 IREIVSEDNCFSNKFVNFDAFW---GKSYENNKNCPIVTVVIDGD-GTVAVGVPGFVSWV 2386 Query 2877 TNG-DFLH---------FLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDAS 2926 +G F+H ++P F+ + YT +I F TS + +A C ++ AS Sbjct 2387 MDGVMFVHMTQTDRRPWYIPTWFNRE-IVGYTQDSIITEGSFYTSIALFSARC-LYLTAS 2444 Query 2927 GKPVPYCYD-TNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCR 2985 P YC++ N G++ + S+ P Y +G + P L V DS YCR Sbjct 2445 NTPQLYCFNGDNDAPGALPFGSIIPHRVYFQPNGVRLIVPQQILHTPYIVKFVSDS-YCR 2503 Query 2986 HGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISA 3045 CE ++ G CVS +WVL ND Y S PGVFCG L+ NM + + +I Sbjct 2504 GSVCEYTKPGYCVSLDSQWVLFNDEYISKPGVFCGSTVRELMFNMVSTFFTGVNP-NIYI 2562 Query 3046 SIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVY 3105 + ++ +V+ + ++F+ F Y+ +V L+++++ VLC+ S L + Sbjct 2563 QLATMFLILVVIVLIFAMVIKFQGVFKAYATIVFTIMLVWVINAFVLCVHSYNSVLAVIL 2622 Query 3106 SVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAY---IICISTKHFYWFFSNYLK 3162 V+Y Y + + + + + H + F +VP W+ Y I+ + T +W + Sbjct 2623 LVLYCYASMVTSRNTAIIMHCWLVFTFGLIVPTWLACCYLGFILYMYTPLVFWCYGTTKN 2682 Query 3163 RRVVFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAM 3221 R +++G F ++ AA TF++ ++KL +++ ++ YL+ Y + KY+SG Sbjct 2683 TRKLYDGNEFVGNYDLAAKSTFVIRGTEFVKLTNEIG---DKFEAYLSAYARLKYYSGTG 2739 Query 3222 DTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMV 3281 Y +A LA AL+ + NSG +V+Y PP+ SI + LQ+GF+K+ PS VE C+V Sbjct 2740 SEQDYLQACRAWLAYALDQYRNSGVEVVYTPPRYSIGVSRLQAGFKKLVSPSSAVEKCIV 2799 Query 3282 QVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRV 3340 V+ LNGLWL D +YCPRHV+ + D+L +NH F V N V L V Sbjct 2800 SVSYRGNNLNGLWLGDSIYCPRHVL---GKFSGDQWGDVLNLANNHEFEVVTQNGVTLNV 2856 Query 3341 IGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIK 3400 + ++ VL L+ AN +TPKYKFV+ G +F++ Y G+ G+Y MR N TI+ Sbjct 2857 VSRRLKGAVLILQTAVANAETPKYKFVKANCGDSFTIACSYGGTVIGLYPVTMRSNGTIR 2916 Query 3401 GSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTD 3460 SFL G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G FYG +VD + AQ D Sbjct 2917 ASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPD 2976 Query 3461 TTITVNVLAWLYAAVIN-------GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDIL 3513 +T N++AWLYAA+I+ +W L T ++ D+N A + P + + Sbjct 2977 NLVTNNIVAWLYAAIISVKESSFSQPKW-LESTTVSIEDYNRWASDNGFTPFSTST--AI 3033 Query 3514 GPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVK 3573 LSA TG+ V + ++ + ILG EDE TP V Q GV QS+ Sbjct 3034 TKLSAITGVDVCKLLRTIM-VKSAQWGSDPILGQYNFEDELTPESVFNQVGGVRLQSSFV 3092 Query 3574 RTIKGTHHW---LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVK 3630 R + W +L L L +V T L F+++ L A+ I+ + VK Sbjct 3093 RKAT-SWFWSRCVLACFLFVLCAIVLFTAVPLKFYVHAAVILLMAVLFISFT------VK 3145 Query 3631 HKHAFLCLFLLPSLATV-----AYFNMVY--MPASWVMRIMTWLDM--VDTSL------- 3674 H A++ FLLP+L TV A +Y + + V+ + W D DT + Sbjct 3146 HVMAYMDTFLLPTLITVIIGVCAEVPFIYNTLISQVVIFLSQWYDPVVFDTMVPWMLLPL 3205 Query 3675 ---SGFK-LKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQA 3730 + FK ++ C M + LL+L + ++T N LT + GN Sbjct 3206 VLYTAFKCVQGCYMNSFNTSLLMLYQFMKL----GFVIYTSSNTLTAYTE---GN----- 3253 Query 3731 ISMWALIISVTSNYSGVVTTVMFLARGIVFMC----VEYCPIFFITGNTLQCIMLVYCFL 3786 W L + + L IVF C + YC + L +M+ + Sbjct 3254 ---WELFFELVHTIVLANVSSNSLIGLIVFKCAKWMLYYCNATYFNNYVLMAVMV--NGI 3308 Query 3787 GYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLG 3846 G+ CTCYFGL+ +N+ F LTLG Y++ VS ++RYM + PPK + F NI + G Sbjct 3309 GWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVDQYRYMCLHKVNPPKTVWEVFTTNILIQG 3368 Query 3847 VGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTE 3906 +GG + +ATVQSK+SDVKCT+VVL+ +L +L VE++SK+ A V+LHN IL + D E Sbjct 3369 IGGDRVLPIATVQSKLSDVKCTTVVLMQLLTKLNVEANSKMHAYLVELHNKILASDDVGE 3428 Query 3907 AFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQ 3966 + ++ +L L + +D+ + C+++L LQ++ EFS +PSYA + A+ YE+ Sbjct 3429 CMDNLLGMLITLFCIDSTIDLGEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKSIYEK 3488 Query 3967 AVAN----GDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKR 4022 +A+ G ++ L +K+ N+AKS FDRD A+Q+KL+ MA++AMT MYK+AR D+R Sbjct 3489 VLADSKNGGVTQQELAAYRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRR 3548 Query 4023 AKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKN 4082 AK+ S++ +LF+ML+K+D++ LN + + A G VPL +P+ + KL +VIPD T+ Sbjct 3549 AKLVSSLHALLFSMLKKIDSEKLNVLFDQANSGVVPLATVPIVCSNKLTLVIPDPETWVK 3608 Query 4083 TCDGTTFTYASALWEIQQVVDADSKIVQLSEISMD-----NSPNLAWPLIVTALRANS-- 4135 +G TY++ +W I V DAD + + + N+AWPL V R Sbjct 3609 CVEGVHVTYSTVVWNIDCVTDADGTELHPTSTGSGLTYCISGDNIAWPLKVNLTRNGHNK 3668 Query 4136 -AVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 V LQNNEL P ++ +C AG Q C+ ++ YY + G V A+ S +LK A Sbjct 3669 VDVALQNNELMPHGVKTKACVAGVDQAHCSVES-KCYYTSISGSSVVAAITSSNPNLKVA 3727 Query 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 F G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ+ Sbjct 3728 SFLNEAGN-QIYVDLDPPCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQS 3786 Query 4255 -GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3787 KGHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPS 3846 Query 4314 ANMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTV 4369 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N V Sbjct 3847 PTPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKV 3905 Query 4370 CTVCGMWKGYGCSCDQLREP-------MLQSADAQSFLN 4401 CTVC W GYGC CD LR+P + S +++LN Sbjct 3906 CTVCQCWIGYGCQCDSLRQPKPSVQSVAVASGFDKNYLN 3944 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 54/263 (21%), Positives = 96/263 (37%), Gaps = 15/263 (6%) Query 933 EGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQD 992 D E+ Q + Q + A ++ E+ ++++ + Sbjct 917 SCDAMAEQAIVEEQEIVPVVEQSQDVVVFTPADLEVVKETAEEVDEFILISAVPKEEVVS 976 Query 993 GSEDNQTTTIQTIVEVQPQLEMELTPV---VQTIEVNSFSGYLKLTDNVYIKNADIVEEA 1049 ++ + + V+ Q E + T E F Y ++ + A ++E Sbjct 977 QEKEEPQVEQEPTLVVKAQREKKAKKFKVKPATCEKPKFLEYKTCVGDLAVVIAKALDEF 1036 Query 1050 KKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHN 1109 K+ +VNAAN ++ HGGGVA A+ DY+ +GP + V Sbjct 1037 KEF---CIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQQ---KLVTPSFV 1090 Query 1110 LAKHCL-HVVGPNVNKGEDIQLLKSAYENFNQHEVL--LAPLLSAGIFGADPIHSLRV-- 1164 C+ +VVGP + L +AY++ V+ + P+LS+GIFG D S+ Sbjct 1091 KGIQCVNNVVGPRHGDSNLREKLVAAYKSVLVGGVVNYVVPVLSSGIFGVDFKISIDAMR 1150 Query 1165 -CVDTVRTNVYLAVFDKNLYDKL 1186 V L + D Sbjct 1151 EAFKGCAIRVLLFSLSQEHIDYF 1173 Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 57/375 (15%), Positives = 113/375 (30%), Gaps = 22/375 (6%) Query 524 GEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDA 583 G I L A ++ V + + + L + D ++L Sbjct 374 GVTPEINDGLILAAIYSSFSVAELVAAIKR--GEPFKFLGHKFVYAKDAAVSFTLAKAAT 431 Query 584 MMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFK-EGVEFL 642 + L + V + + + + + ++ +G V L+ + K + V Sbjct 432 IADVLKLFQSARVKVEDVWSSLTEKSFEFWRLAYGKVRN-LEEFVKTCFCKAQMAIVILA 490 Query 643 RDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSII-IGGAKLK 701 E + + + VGG ++ + F + + + +++ + G Sbjct 491 TVLGEGIWHLVSQVIYKVGGLFTKVVDFCEKYWKGFCAQLKRAKLIVTETLCVLKGVAQH 550 Query 702 ALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTG 761 L + ++KC R LL +II EG+ + + + V G Sbjct 551 CFQLLLDAIQFMYKSFKKCALGRIHGDLLFWKGGVHKIIQ-EGDEIWFDAIDSIDVEDLG 609 Query 762 DLQPLEQPTSEAVEAPLV----GTPVCING-----LMLLEIKDTEKYCALAPNMMVTNNT 812 +Q L G V I + KD Y + N Sbjct 610 VVQEKLIDFDVCDNVTLPENQPGHMVQIEDDGKNYMFFRFKKDENIYYTPMSQLGAINVV 669 Query 813 FTLKGGAPTKVTFGDDTVIEV--QGYKSVNITFELD-ERIDKVLNEKCS-AYTVELGTEV 868 VTFG+ TV E+ + ++ E E + + + VE V Sbjct 670 CK---AGGKTVTFGETTVQEIPPPDVVFIKVSIECCGEPWNTIFKKAYKEPIEVETDLTV 726 Query 869 NEFACVVADAVIKTL 883 + VV + + L Sbjct 727 EQLLSVVYEKMCDDL 741 >sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus 229E OX=11137 GN=1a PE=1 SV=1 Length=4085 Score = 2615 bits (6777), Expect = 0.0, Method: Composition-based stats. Identities = 753/2308 (33%), Positives = 1185/2308 (51%), Gaps = 137/2308 (6%) Query 2124 THGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVC-------TNYMPYFFTLL 2176 H L+ ++ + Y P N + + N++ FFT L Sbjct 1882 KHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLDEKAQKFFDFGDFLIHNFV-IFFTWL 1940 Query 2177 LQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIW 2232 L + T ++ + +I A P +S+ K+ L+AS LKS W Sbjct 1941 LSMFTLCKTAVTTGDVKIMAKAPQRTGVVLKRSL-KYNLKASAAVLKSK----------W 1989 Query 2233 FLLLSVC-LGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVC 2291 +LL L LIY+ ++ +L G ++C+ GY S N YC GS+ C +C Sbjct 1990 WLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYAKS-NFVKDDYCDGSLGCKMC 2048 Query 2292 LSGLDSLDTYPSLETIQITISSFKW-DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLF 2350 L G L + L+ + I+ + ++ F ++ + + R F + +A ++ Sbjct 2049 LFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLIFGDNYLRCFLLYFVAQMISTV 2108 Query 2351 FSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCM 2410 + + +W + P + + V HV+ GC + C+ Sbjct 2109 GVFLG--YKETNWFLHF-------IPFDVICDELLVTVIVIKVISFVRHVLFGCENPDCI 2159 Query 2411 MCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVA 2470 C K R R TIVNGV+RSFYV ANGG FCK H + CV+CD++ GSTFI+ EV+ Sbjct 2160 ACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDSYGYGSTFITPEVS 2219 Query 2471 RDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRAN 2530 R+L K + PT + ++D V +NG LY + + + S + + + Sbjct 2220 RELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDITESKYSCKEVFKNC 2279 Query 2531 NTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKM 2590 N + IVF+ + K+ASVY+SQL+C+PI L+D L+S + S + + Sbjct 2280 NV----LDDFIVFNNNGT-NVTQVKNASVYFSQLLCRPIKLVDSELLSTL--SVDFNGVL 2332 Query 2591 FDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKD 2650 AY++ ++F L ++ AE + A +S+ + Sbjct 2333 HKAYIDVLRNSFGKD---LNANMSLAECKRALGLSI--------------------SDHE 2369 Query 2651 VVECLKLSHQSDIEVTGDSCNNYMLTYNKVE-NMTPRDLGACIDCSARHINAQVAKSHNI 2709 + +H+ D+ ++ S NN++ +Y K E ++ DL C+ A+ +NA V Sbjct 2370 FTSAISNAHRCDVLLSDLSFNNFVSSYAKPEEKLSAYDLACCMRAGAKVVNANVLTKDQT 2429 Query 2710 ALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVN-- 2767 ++W+ KDF SLS + RK I +K L F LT + V + T I K G Sbjct 2430 PIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQAVTQIPATSIVAKQGAGDAGH 2489 Query 2768 --NWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDT 2825 WL L + + F F ++S S E +K I+ G ++ + Sbjct 2490 SLTWLWLLCGLVCLIQFYLCFFMPYFMYDIVS-----SFEGYDFKYIENGQLKNFEAPLK 2544 Query 2826 CFANKHADFDTWFSQRGGS-YTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHF 2884 C N +F+ W + G N ++CP++ V E+ V G+P + G L F Sbjct 2545 CVRNVFENFEDWHYAKFGFTPLNKQSCPIVVGV--SEIVNTVAGIPSNVYLV--GKTLIF 2600 Query 2885 LPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVA 2944 + +CY + C+ + CT + G V YCY+T ++EGS+ Sbjct 2601 TLQAAFGNAGVCYD-----IFGVTTPEKCIFTSACTRLEGLGGNNV-YCYNTALMEGSLP 2654 Query 2945 YESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSEAGVCVSTSGR 3003 Y S++ + Y +G+ I+ P +G R V T ++YCR G C S AGVC + Sbjct 2655 YSSIQANAYYKYDNGNFIKLPEVIAQGFGFRTVRTIATKYCRVGECVESNAGVCFGFD-K 2713 Query 3004 WVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYY 3063 W +N+ R G CG NL+ N+ + +S I+ + + Sbjct 2714 WFVNDG--RVANGYVCGTGLWNLVFNILSMFSSSFSVAAMSGQILLNCALGAFAIFCCFL 2771 Query 3064 FMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFL 3123 +FRR FG+ S V + L++ +T + Y+++Y + T L +++ Sbjct 2772 VTKFRRMFGDLSVGVCTVVVAVLLNNVSYIVTQNLVTMIA-YAILYFFATRSL--RYAWI 2828 Query 3124 AHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFNGVSF-STFEEAA 3179 +++ + P+W+ Y + + T + LK +V +F G F TFE AA Sbjct 2829 WCAAYLIAYISFAPWWLCAWYFLAMLTG----LLPSLLKLKVSTNLFEGDKFVGTFESAA 2884 Query 3180 LCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALN 3239 TF+++ Y KL + + + Y A YN+YKY+SG + YR A +LAKA+ Sbjct 2885 AGTFVIDMRSYEKLANSI--SPEKLKSYAASYNRYKYYSGNANEADYRCACYAYLAKAML 2942 Query 3240 DFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVV 3299 DFS +D+LY PP S S LQ+G RKMA PSG VE C+V+V G T LNGLWL D+V Sbjct 2943 DFSRDHNDILYTPPTVSYGST-LQAGLRKMAQPSGFVEKCVVRVCYGNTVLNGLWLGDIV 3001 Query 3300 YCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANP 3359 YCPRHVI ++ +Y+ HNF + +G L V+G +M LK+KV N Sbjct 3002 YCPRHVIASNTT-SAIDYDHEYSIMRLHNFSIISGTAFLGVVGATMHGVTLKIKVSQTNM 3060 Query 3360 KTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDC 3419 TP++ F ++ G+ F++LACY+G GV+ MR N+TI+GSF+NG+CGS G+N+ Sbjct 3061 HTPRHSFRTLKSGEGFNILACYDGCAQGVFGVNMRTNWTIRGSFINGACGSPGYNLKNGE 3120 Query 3420 VSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGD 3479 V F YMH +EL +G H G+ +G YG F D+ Q + +TVNV+A+LYAA++NG Sbjct 3121 VEFVYMHQIELGSGSHVGSSFDGVMYGGFEDQPNLQVESANQMLTVNVVAFLYAAILNGC 3180 Query 3480 RWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGM 3539 W+L + +N A + + + D L+A+TG+ V + +++ +L NG Sbjct 3181 TWWLKGEKLFVEHYNEWAQANGFTAMNGE--DAFSILAAKTGVCVERLLHAIQ-VLNNGF 3237 Query 3540 NGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQ 3599 G+ ILG + L DEF+ +VV+Q GV QS K T + +++ V+ + Sbjct 3238 GGKQILGYSSLNDEFSINEVVKQMFGVNLQSG-----KTTSMFKSISLFAGFFVMFWAEL 3292 Query 3600 W--SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3657 + + ++ PF + ++A+S VKHK FL +FLLPS+ A N + Sbjct 3293 FVYTTTIWVNPGFLTPFMILLVALSLCLTFVVKHKVLFLQVFLLPSIIVAAIQNCAW--D 3350 Query 3658 SWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL 3717 V +++ + S+ ++ V + + +L T R + L +++ + Sbjct 3351 YHVTKVLAEKFDYNVSVMQMDIQGFVNIFICLFVALLHTWRFAKERCTHWCTYLFSLIAV 3410 Query 3718 VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARG-IVFMCVEYCPIFFITGNTL 3776 +Y Y +S+ +++ SN + + + R + F+ VEY F + + Sbjct 3411 LYTALYSY---DYVSLLVMLLCAISNEWYIGAIIFRICRFGVAFLPVEYVSYF----DGV 3463 Query 3777 QCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSID 3836 + ++L Y LG+ Y+GL +NR+ + TLGVYD+ VS EF+YM + GL P D Sbjct 3464 KTVLLFYMLLGFVSCMYYGLLYWINRFCKCTLGVYDFCVSPAEFKYMVANGLNAPNGPFD 3523 Query 3837 AFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHN 3896 A L+ KL+G+GG IKV+TVQSK++D+KCT+VVL+ +L + + S+SK WA CV++HN Sbjct 3524 ALFLSFKLMGIGGPRTIKVSTVQSKLTDLKCTNVVLMGILSNMNIASNSKEWAYCVEMHN 3583 Query 3897 DILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA 3956 I L D A E +++LL+ LS + L + +N + LQ++AS F +PS+ A Sbjct 3584 KINLCDDPETAQELLLALLAFFLSKHSDFGLGDLVDSYFENDSILQSVASSFVGMPSFVA 3643 Query 3957 FATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQA 4016 + TA++ YE AVANG S ++K+LKK++NVAK+EFDR++++Q+K+ +MA+QA MYK+A Sbjct 3644 YETARQEYENAVANGSSPQIIKQLKKAMNVAKAEFDRESSVQKKINRMAEQAAAAMYKEA 3703 Query 4017 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPD 4076 R+ ++++KV SAM ++LF MLR+LD +++ I+N AR+G VPL++IP T+AA+L+VV+PD Sbjct 3704 RAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNMARNGVVPLSVIPATSAARLVVVVPD 3763 Query 4077 YNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSA 4136 ++++ YA +W +Q+V D D K V L +++ +N L WPLI+T R Sbjct 3764 HDSFVKMMVDGFVHYAGVVWTLQEVKDNDGKNVHLKDVTKENQEILVWPLILTCER---V 3820 Query 4137 VKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARF 4196 VKLQNNE+ P ++ + ++ NAL YN G F+ A ++ +K+ ++ Sbjct 3821 VKLQNNEIMPGKMKVKATKGEGDGGITSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKW 3878 Query 4197 PKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGN 4256 G T+ ELEPPCRFV DTP GP++KYLYF+K LNNL RG VLG + ATVRLQAG Sbjct 3879 EHDSGVVTV--ELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQAGK 3936 Query 4257 ATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANM 4316 TE +NS +L+ C+FAVD A AY D + G +P+ NCVKML +G+GQAIT T ++N Sbjct 3937 QTEFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTIDSNT 3996 Query 4317 DQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMW 4376 Q+++GGAS C+YCR H+ HP GFC KGK+VQ+P NDP+ F L+NTVC VCG W Sbjct 3997 TQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVCGCW 4055 Query 4377 KGYGCSCDQLREPMLQSADAQSFLNGFA 4404 +GC+CD+ +QS D S+LN Sbjct 4056 LNHGCTCDR---TAIQSFD-NSYLNESG 4079 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 126/770 (16%), Positives = 259/770 (34%), Gaps = 71/770 (9%) Query 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK-QV 1199 + +S G + + +S +CVD N + L + + V Sbjct 1193 CSSIFRGAVSCGHYQTNI-YSQNLCVDGFGVNKIQPWTNDALNTICIKDADYNAKVEISV 1251 Query 1200 EQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLE---ETKFLTENLLLY 1256 + + F+ + K + + + V+ V ++ ENL Sbjct 1252 TPIKNTVDTTPKEEFVVKEKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHG 1311 Query 1257 IDINGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLT---AVVIPTKKAGGTTEM 1312 + L + + + + VG V+ E VV P +K ++ Sbjct 1312 GGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGP-RKGKHERDL 1370 Query 1313 LAKALRKVPTDN--YITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGT 1370 L KA + + +T G+ G +E + VL + + + + Sbjct 1371 LIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEV---KVFVYTDTEVCK 1427 Query 1371 VSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTT 1430 V + ++ + + + VS I+ + + VD ++ Sbjct 1428 VKDFVSGLVNVQKVEQPKI-----EPKPVSVIK-----VAPKPYRVDGKFSYF------- 1470 Query 1431 VASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYL 1490 L+ +D + +V + L L++ + + + +S + D V Sbjct 1471 TEDLLCVADD--KPIVL----FTDSMLTLDDRGLALDN-ALSGVLSAAIKDCVDINKAIP 1523 Query 1491 TSS-SKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYY--TSNPTTFHLD 1547 + + K + + + S KD + + + V L Sbjct 1524 SGNLIKFDIGSVVVYMCVVPSEKDKHLDNNVQRCTRKLNRLMCDIVCTIPADYILPLVLS 1583 Query 1548 GEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKI 1607 + L E + I + T D +N+H V ++ QQ G D++ Sbjct 1584 SLTCNVSFVGE-LKAAEAKVITIKVTEDGVNVHDVTVTTDKSFEQQVGVIADKDKDLSGA 1642 Query 1608 KPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTS 1666 P + + + + V+ E+Y D + ++H+ ++ VNG+ Sbjct 1643 VPSDLNTSELL-----TKAIDVDWVEFYGFKD----AVTFATVDHSAFAYESAVVNGIRV 1693 Query 1667 IKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELG 1726 +K +DNNC++ + LQ + F L A+ + G+ F A + G+ G Sbjct 1694 LKTSDNNCWVNAVCIALQYSKPHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKG 1753 Query 1727 DVRETMSYLFQH-ANLDSCKRVLNVVCKTCGQQ-QTTLKGVEAVMYMGTLSYEQFKKGVQ 1784 D +T++ L ++ AN + C C + + ++ + + + ++ + + G Sbjct 1754 DAEDTLTKLSKYLANEAQVQLEHYSSCVECDAKFKNSVASINSAIVCASVKRDGVQVGY- 1812 Query 1785 IPCTCGKQATKYLVQQESPFVMMSA----PPAQYELKHGTFTCASEYTGNYQCGHYK-HI 1839 C G + + +++S P AQ L G A ++G GHY + Sbjct 1813 --CVHGIKYYSRVRSVRGRAIIVSVEQLEPCAQSRLLSGVAYTA--FSGPVDKGHYTVYD 1868 Query 1840 TSKETLYCIDGALLTKSSEYKGPITDVF----YKENSYTTTIKPVTYKLD 1885 T+K+++Y DG K +T V Y T KPV +LD Sbjct 1869 TAKKSMY--DGDRFVKHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLD 1916 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 69/249 (28%), Positives = 108/249 (43%), Gaps = 16/249 (6%) Query 991 QDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLK--------LTDNVYIKN 1042 Q + D T + ++E+ +TP+ T++ ++ + DNV Sbjct 1226 QPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEFVVKEKLNAFLVHDNVAFYQ 1285 Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 1102 D+ V +VNAAN L HGGG+A AL+ T +Q S ++I G +KVG Sbjct 1286 GDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTG 1345 Query 1103 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSL 1162 ++ +L +VVGP K E L+K+ N+ L P+LS GIFG SL Sbjct 1346 VMVECDSL--RIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSL 1403 Query 1163 RVCVDTVRTN-VYLAVFDKNLYDK---LVSSFLEMKSEKQ--VEQKIAEIPKEEVKPFIT 1216 V +D T V + V+ K VS + ++ +Q +E K + K KP+ Sbjct 1404 EVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRV 1463 Query 1217 ESKPSVEQR 1225 + K S Sbjct 1464 DGKFSYFTE 1472 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 58/269 (22%), Positives = 99/269 (37%), Gaps = 20/269 (7%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 + ++NGL +K DNNC++ + +L +Q + A+Q + G A Sbjct 1037 PFEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQF----FKMGRVAKMIERCYT 1092 Query 1717 YCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSY 1776 G +GDV M L + +L + V++ C + + T + Sbjct 1093 AEQCIRGAMGDVGLCMYRLLK--DLHTGFMVMDYKCSCTSGRLEE----SGAVLFCTPTK 1146 Query 1777 EQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHY 1836 + F G + C + T +Q FV P C+S + G CGHY Sbjct 1147 KAFPYGTCLNCNAPRMCTIRQLQGTIIFVQQKPEPVNPVSFVVKPVCSSIFRGAVSCGHY 1206 Query 1837 KHITSKETLYCIDGALLTKS------SEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCT 1890 + + L C+DG + K + I D Y ++ P+ +D Sbjct 1207 QTNIYSQNL-CVDGFGVNKIQPWTNDALNTICIKDADYNAKVE-ISVTPIKNTVDTTPKE 1264 Query 1891 E--IDPKLDNYYKKDNSYFTEQPIDLVPN 1917 E + KL+ + DN F + +D V N Sbjct 1265 EFVVKEKLNAFLVHDNVAFYQGDVDTVVN 1293 Score = 67.1 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 79/544 (15%), Positives = 163/544 (30%), Gaps = 77/544 (14%) Query 171 RELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYC 230 +++ GG Y D CG DG P+ S L + +D + Sbjct 101 FDVVFGKRGGGNVTYTDQYLCGADGKPV------------MSEDLWQFVDHFGENEEIII 148 Query 231 CREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEK 290 H + AW T+R Y+ Q I+ + S+++ + Sbjct 149 -NGHTYVCAWLTKRKPLDYKRQNNLAIEEIEYVHGDA----LHTLRNGSVLEMAKEVKTS 203 Query 291 KKLDGFMGRIRSVYPVASPNECN----------QMCLSTLMKCDHCGETSWQTGDFVKAT 340 K+ + SP N + +S L++C CG SW GD+ Sbjct 204 SKVVLSDALDKLYKVFGSPVMTNGSNILEAFTKPVFISALVQCT-CGTKSWSVGDWTG-- 260 Query 341 CEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKG 400 ++C + N + + V P ++ T + G Sbjct 261 ------------FKSSCCNVISNKLCVVP------GNVKPGDAVI---------TTQQAG 293 Query 401 GRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVN 460 F G +V + W A ++ C E +N + Sbjct 294 AGIKYFCGMTLKFVANIEGVSVWRVIALQSVDCFVASSTFVEEEHVNR-------MDTFC 346 Query 461 INIVGDFKLNEEIAIILASFSAST-----SAFVETVKGLDYKAFKQIVESCGNFKVTKGK 515 N+ +A++ A +++ S ++ G + + I + V K + Sbjct 347 FNVRNSVTDECRLAMLGAEMTSNVRRQVASGVIDISTGW-FDVYDDIFAESKPWFVRKAE 405 Query 516 AKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQ 575 G S L L E R V+SI + + ++++L L+ Sbjct 406 DIFGPC-WSALASALKQLKVTTGELVRFVKSICNSAVAVVGGTIQILASVPEKFLNAFDV 464 Query 576 YS---LRLIDAMMFTSDLAT---NNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLD 629 + + D + T +A + + + +V+L + L + K+K Sbjct 465 FVTAIQTVFDCAVETCTIAGKAFDKVFDYVLLDNALVKLVTTKLKGVRERGLNKVKYATV 524 Query 630 WLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALC 689 + + + ++ + + G V +F+L+ ++ Sbjct 525 VVGSTEEVKSSRVERSTAVLTIANNYSKLFDEGYTVVIGDVAYFVSDGYFRLMASPNSVL 584 Query 690 ADSI 693 ++ Sbjct 585 TTAV 588 >sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 2613 bits (6772), Expect = 0.0, Method: Composition-based stats. Identities = 753/2305 (33%), Positives = 1185/2305 (51%), Gaps = 137/2305 (6%) Query 2124 THGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVC-------TNYMPYFFTLL 2176 H L+ ++ + Y P N + + N++ FFT L Sbjct 1882 KHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLDEKAQKFFDFGDFLIHNFV-IFFTWL 1940 Query 2177 LQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIW 2232 L + T ++ + +I A P +S+ K+ L+AS LKS W Sbjct 1941 LSMFTLCKTAVTTGDVKIMAKAPQRTGVVLKRSL-KYNLKASAAVLKSK----------W 1989 Query 2233 FLLLSVC-LGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVC 2291 +LL L LIY+ ++ +L G ++C+ GY S N YC GS+ C +C Sbjct 1990 WLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYAKS-NFVKDDYCDGSLGCKMC 2048 Query 2292 LSGLDSLDTYPSLETIQITISSFKW-DLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLF 2350 L G L + L+ + I+ + ++ F ++ + + R F + +A ++ Sbjct 2049 LFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLIFGDNYLRCFLLYFVAQMISTV 2108 Query 2351 FSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCM 2410 + + +W + P + + V HV+ GC + C+ Sbjct 2109 GVFLG--YKETNWFLHF-------IPFDVICDELLVTVIVIKVISFVRHVLFGCENPDCI 2159 Query 2411 MCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVA 2470 C K R R TIVNGV+RSFYV ANGG FCK H + CV+CD++ GSTFI+ EV+ Sbjct 2160 ACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDSYGYGSTFITPEVS 2219 Query 2471 RDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRAN 2530 R+L K + PT + ++D V +NG LY + + + S + + + Sbjct 2220 RELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDITESKYSCKEVFKNC 2279 Query 2531 NTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKM 2590 N + IVF+ + K+ASVY+SQL+C+PI L+D L+S + S + + Sbjct 2280 NV----LDDFIVFNNNGT-NVTQVKNASVYFSQLLCRPIKLVDSELLSTL--SVDFNGVL 2332 Query 2591 FDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKD 2650 AY++ ++F L ++ AE + A +S+ + Sbjct 2333 HKAYIDVLRNSFGKD---LNANMSLAECKRALGLSI--------------------SDHE 2369 Query 2651 VVECLKLSHQSDIEVTGDSCNNYMLTYNKVE-NMTPRDLGACIDCSARHINAQVAKSHNI 2709 + +H+ D+ ++ S NN++ +Y K E ++ DL C+ A+ +NA V Sbjct 2370 FTSAISNAHRCDVLLSDLSFNNFVSSYAKPEEKLSAYDLACCMRAGAKVVNANVLTKDQT 2429 Query 2710 ALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVN-- 2767 ++W+ KDF SLS + RK I +K L F LT + V + T I K G Sbjct 2430 PIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQAVTQIPATSIVAKQGAGDAGH 2489 Query 2768 --NWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDT 2825 WL L + + F F ++S S E +K I+ G ++ + Sbjct 2490 SLTWLWLLCGLVCLIQFYLCFFMPYFMYDIVS-----SFEGYDFKYIENGQLKNFEAPLK 2544 Query 2826 CFANKHADFDTWFSQRGGS-YTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHF 2884 C N +F+ W + G N ++CP++ V E+ V G+P + G L F Sbjct 2545 CVRNVFENFEDWHYAKFGFTPLNKQSCPIVVGV--SEIVNTVAGIPSNVYLV--GKTLIF 2600 Query 2885 LPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSVA 2944 + +CY + C+ + CT + G V YCY+T ++EGS+ Sbjct 2601 TLQAAFGNAGVCYD-----IFGVTTPEKCIFTSACTRLEGLGGNNV-YCYNTALMEGSLP 2654 Query 2945 YESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSEAGVCVSTSGR 3003 Y S++ + Y +G+ I+ P +G R V T ++YCR G C S AGVC + Sbjct 2655 YSSIQANAYYKYDNGNFIKLPEVIAQGFGFRTVRTIATKYCRVGECVESNAGVCFGFD-K 2713 Query 3004 WVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYY 3063 W +N+ R G CG NL+ N+ + +S I+ + + Sbjct 2714 WFVNDG--RVANGYVCGTGLWNLVFNILSMFSSSFSVAAMSGQILLNCALGAFAIFCCFL 2771 Query 3064 FMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFL 3123 +FRR FG+ S V + L++ +T + Y+++Y + T L +++ Sbjct 2772 VTKFRRMFGDLSVGVCTVVVAVLLNNVSYIVTQNLVTMIA-YAILYFFATRSL--RYAWI 2828 Query 3124 AHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFNGVSF-STFEEAA 3179 +++ + P+W+ Y + + T + LK +V +F G F TFE AA Sbjct 2829 WCAAYLIAYISFAPWWLCAWYFLAMLTG----LLPSLLKLKVSTNLFEGDKFVGTFESAA 2884 Query 3180 LCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKALN 3239 TF+++ Y KL + + + Y A YN+YKY+SG + YR A +LAKA+ Sbjct 2885 AGTFVIDMRSYEKLANSI--SPEKLKSYAASYNRYKYYSGNANEADYRCACYAYLAKAML 2942 Query 3240 DFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVV 3299 DFS +D+LY PP S S LQ+G RKMA PSG VE C+V+V G T LNGLWL D+V Sbjct 2943 DFSRDHNDILYTPPTVSYGST-LQAGLRKMAQPSGFVEKCVVRVCYGNTVLNGLWLGDIV 3001 Query 3300 YCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANP 3359 YCPRHVI ++ +Y+ HNF + +G L V+G +M LK+KV N Sbjct 3002 YCPRHVIASNTT-SAIDYDHEYSIMRLHNFSIISGTAFLGVVGATMHGVTLKIKVSQTNM 3060 Query 3360 KTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDC 3419 TP++ F ++ G+ F++LACY+G GV+ MR N+TI+GSF+NG+CGS G+N+ Sbjct 3061 HTPRHSFRTLKSGEGFNILACYDGCAQGVFGVNMRTNWTIRGSFINGACGSPGYNLKNGE 3120 Query 3420 VSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGD 3479 V F YMH +EL +G H G+ +G YG F D+ Q + +TVNV+A+LYAA++NG Sbjct 3121 VEFVYMHQIELGSGSHVGSSFDGVMYGGFEDQPNLQVESANQMLTVNVVAFLYAAILNGC 3180 Query 3480 RWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGM 3539 W+L + +N A + + + D L+A+TG+ V + +++ +L NG Sbjct 3181 TWWLKGEKLFVEHYNEWAQANGFTAMNGE--DAFSILAAKTGVCVERLLHAIQ-VLNNGF 3237 Query 3540 NGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQ 3599 G+ ILG + L DEF+ +VV+Q GV QS K T + +++ V+ + Sbjct 3238 GGKQILGYSSLNDEFSINEVVKQMFGVNLQSG-----KTTSMFKSISLFAGFFVMFWAEL 3292 Query 3600 W--SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3657 + + ++ PF + ++A+S VKHK FL +FLLPS+ A N + Sbjct 3293 FVYTTTIWVNPGFLTPFMILLVALSLCLTFVVKHKVLFLQVFLLPSIIVAAIQNCAW--D 3350 Query 3658 SWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL 3717 V +++ + S+ ++ V + + +L T R + L +++ + Sbjct 3351 YHVTKVLAEKFDYNVSVMQMDIQGFVNIFICLFVALLHTWRFAKERCTHWCTYLFSLIAV 3410 Query 3718 VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARG-IVFMCVEYCPIFFITGNTL 3776 +Y Y +S+ +++ SN + + + R + F+ VEY F + + Sbjct 3411 LYTALYSY---DYVSLLVMLLCAISNEWYIGAIIFRICRFGVAFLPVEYVSYF----DGV 3463 Query 3777 QCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSID 3836 + ++L Y LG+ Y+GL +NR+ + TLGVYD+ VS EF+YM + GL P D Sbjct 3464 KTVLLFYMLLGFVSCMYYGLLYWINRFCKCTLGVYDFCVSPAEFKYMVANGLNAPNGPFD 3523 Query 3837 AFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHN 3896 A L+ KL+G+GG IKV+TVQSK++D+KCT+VVL+ +L + + S+SK WA CV++HN Sbjct 3524 ALFLSFKLMGIGGPRTIKVSTVQSKLTDLKCTNVVLMGILSNMNIASNSKEWAYCVEMHN 3583 Query 3897 DILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAA 3956 I L D A E +++LL+ LS + L + +N + LQ++AS F +PS+ A Sbjct 3584 KINLCDDPETAQELLLALLAFFLSKHSDFGLGDLVDSYFENDSILQSVASSFVGMPSFVA 3643 Query 3957 FATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQA 4016 + TA++ YE AVANG S ++K+LKK++NVAK+EFDR++++Q+K+ +MA+QA MYK+A Sbjct 3644 YETARQEYENAVANGSSPQIIKQLKKAMNVAKAEFDRESSVQKKINRMAEQAAAAMYKEA 3703 Query 4017 RSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPD 4076 R+ ++++KV SAM ++LF MLR+LD +++ I+N AR+G VPL++IP T+AA+L+VV+PD Sbjct 3704 RAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNMARNGVVPLSVIPATSAARLVVVVPD 3763 Query 4077 YNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSA 4136 ++++ YA +W +Q+V D D K V L +++ +N L WPLI+T R Sbjct 3764 HDSFVKMMVDGFVHYAGVVWTLQEVKDNDGKNVHLKDVTKENQEILVWPLILTCER---V 3820 Query 4137 VKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARF 4196 VKLQNNE+ P ++ + ++ NAL YN G F+ A ++ +K+ ++ Sbjct 3821 VKLQNNEIMPGKMKVKATKGEGDGGITSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKW 3878 Query 4197 PKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGN 4256 G T+ ELEPPCRFV DTP GP++KYLYF+K LNNL RG VLG + ATVRLQAG Sbjct 3879 EHDSGVVTV--ELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQAGK 3936 Query 4257 ATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANM 4316 TE +NS +L+ C+FAVD A AY D + G +P+ NCVKML +G+GQAIT T ++N Sbjct 3937 QTEFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTIDSNT 3996 Query 4317 DQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMW 4376 Q+++GGAS C+YCR H+ HP GFC KGK+VQ+P NDP+ F L+NTVC VCG W Sbjct 3997 TQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVCGCW 4055 Query 4377 KGYGCSCDQLREPMLQSADAQSFLN 4401 +GC+CD+ +QS D S+LN Sbjct 4056 LNHGCTCDR---TAIQSFD-NSYLN 4076 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 126/770 (16%), Positives = 259/770 (34%), Gaps = 71/770 (9%) Query 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEK-QV 1199 + +S G + + +S +CVD N + L + + V Sbjct 1193 CSSIFRGAVSCGHYQTNI-YSQNLCVDGFGVNKIQPWTNDALNTICIKDADYNAKVEISV 1251 Query 1200 EQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLE---ETKFLTENLLLY 1256 + + F+ + K + + + V+ V ++ ENL Sbjct 1252 TPIKNTVDTTPKEEFVVKEKLNAFLVHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHG 1311 Query 1257 IDINGNLHPDSATLVSDIDITFLKKDAPYIVGD-VVQEGVLT---AVVIPTKKAGGTTEM 1312 + L + + + + VG V+ E VV P +K ++ Sbjct 1312 GGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGP-RKGKHERDL 1370 Query 1313 LAKALRKVPTDN--YITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGT 1370 L KA + + +T G+ G +E + VL + + + + Sbjct 1371 LIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTKEV---KVFVYTDTEVCK 1427 Query 1371 VSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTT 1430 V + ++ + + + VS I+ + + VD ++ Sbjct 1428 VKDFVSGLVNVQKVEQPKI-----EPKPVSVIK-----VAPKPYRVDGKFSYF------- 1470 Query 1431 VASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYL 1490 L+ +D + +V + L L++ + + + +S + D V Sbjct 1471 TEDLLCVADD--KPIVL----FTDSMLTLDDRGLALDN-ALSGVLSAAIKDCVDINKAIP 1523 Query 1491 TSS-SKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYY--TSNPTTFHLD 1547 + + K + + + S KD + + + V L Sbjct 1524 SGNLIKFDIGSVVVYMCVVPSEKDKHLDNNVQRCTRKLNRLMCDIVCTIPADYILPLVLS 1583 Query 1548 GEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKI 1607 + L E + I + T D +N+H V ++ QQ G D++ Sbjct 1584 SLTCNVSFVGE-LKAAEAKVITIKVTEDGVNVHDVTVTTDKSFEQQVGVIADKDKDLSGA 1642 Query 1608 KPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTS 1666 P + + + + V+ E+Y D + ++H+ ++ VNG+ Sbjct 1643 VPSDLNTSELL-----TKAIDVDWVEFYGFKD----AVTFATVDHSAFAYESAVVNGIRV 1693 Query 1667 IKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELG 1726 +K +DNNC++ + LQ + F L A+ + G+ F A + G+ G Sbjct 1694 LKTSDNNCWVNAVCIALQYSKPHFISQGLDAAWNKFVLGDVEIFVAFVYYVARLMKGDKG 1753 Query 1727 DVRETMSYLFQH-ANLDSCKRVLNVVCKTCGQQ-QTTLKGVEAVMYMGTLSYEQFKKGVQ 1784 D +T++ L ++ AN + C C + + ++ + + + ++ + + G Sbjct 1754 DAEDTLTKLSKYLANEAQVQLEHYSSCVECDAKFKNSVASINSAIVCASVKRDGVQVGY- 1812 Query 1785 IPCTCGKQATKYLVQQESPFVMMSA----PPAQYELKHGTFTCASEYTGNYQCGHYK-HI 1839 C G + + +++S P AQ L G A ++G GHY + Sbjct 1813 --CVHGIKYYSRVRSVRGRAIIVSVEQLEPCAQSRLLSGVAYTA--FSGPVDKGHYTVYD 1868 Query 1840 TSKETLYCIDGALLTKSSEYKGPITDVF----YKENSYTTTIKPVTYKLD 1885 T+K+++Y DG K +T V Y T KPV +LD Sbjct 1869 TAKKSMY--DGDRFVKHDLSLLSVTSVVMVGGYVAPVNTVKPKPVINQLD 1916 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 69/249 (28%), Positives = 108/249 (43%), Gaps = 16/249 (6%) Query 991 QDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLK--------LTDNVYIKN 1042 Q + D T + ++E+ +TP+ T++ ++ + DNV Sbjct 1226 QPWTNDALNTICIKDADYNAKVEISVTPIKNTVDTTPKEEFVVKEKLNAFLVHDNVAFYQ 1285 Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS 1102 D+ V +VNAAN L HGGG+A AL+ T +Q S ++I G +KVG Sbjct 1286 GDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTG 1345 Query 1103 CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSL 1162 ++ +L +VVGP K E L+K+ N+ L P+LS GIFG SL Sbjct 1346 VMVECDSL--RIFNVVGPRKGKHERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSL 1403 Query 1163 RVCVDTVRTN-VYLAVFDKNLYDK---LVSSFLEMKSEKQ--VEQKIAEIPKEEVKPFIT 1216 V +D T V + V+ K VS + ++ +Q +E K + K KP+ Sbjct 1404 EVLLDVCNTKEVKVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRV 1463 Query 1217 ESKPSVEQR 1225 + K S Sbjct 1464 DGKFSYFTE 1472 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 58/269 (22%), Positives = 99/269 (37%), Gaps = 20/269 (7%) Query 1657 KYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILA 1716 + ++NGL +K DNNC++ + +L +Q + A+Q + G A Sbjct 1037 PFEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQF----FKMGRVAKMIERCYT 1092 Query 1717 YCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSY 1776 G +GDV M L + +L + V++ C + + T + Sbjct 1093 AEQCIRGAMGDVGLCMYRLLK--DLHTGFMVMDYKCSCTSGRLEE----SGAVLFCTPTK 1146 Query 1777 EQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHY 1836 + F G + C + T +Q FV P C+S + G CGHY Sbjct 1147 KAFPYGTCLNCNAPRMCTIRQLQGTIIFVQQKPEPVNPVSFVVKPVCSSIFRGAVSCGHY 1206 Query 1837 KHITSKETLYCIDGALLTKS------SEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCT 1890 + + L C+DG + K + I D Y ++ P+ +D Sbjct 1207 QTNIYSQNL-CVDGFGVNKIQPWTNDALNTICIKDADYNAKVE-ISVTPIKNTVDTTPKE 1264 Query 1891 E--IDPKLDNYYKKDNSYFTEQPIDLVPN 1917 E + KL+ + DN F + +D V N Sbjct 1265 EFVVKEKLNAFLVHDNVAFYQGDVDTVVN 1293 Score = 67.1 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 79/544 (15%), Positives = 163/544 (30%), Gaps = 77/544 (14%) Query 171 RELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYC 230 +++ GG Y D CG DG P+ S L + +D + Sbjct 101 FDVVFGKRGGGNVTYTDQYLCGADGKPV------------MSEDLWQFVDHFGENEEIII 148 Query 231 CREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEK 290 H + AW T+R Y+ Q I+ + S+++ + Sbjct 149 -NGHTYVCAWLTKRKPLDYKRQNNLAIEEIEYVHGDA----LHTLRNGSVLEMAKEVKTS 203 Query 291 KKLDGFMGRIRSVYPVASPNECN----------QMCLSTLMKCDHCGETSWQTGDFVKAT 340 K+ + SP N + +S L++C CG SW GD+ Sbjct 204 SKVVLSDALDKLYKVFGSPVMTNGSNILEAFTKPVFISALVQCT-CGTKSWSVGDWTG-- 260 Query 341 CEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKG 400 ++C + N + + V P ++ T + G Sbjct 261 ------------FKSSCCNVISNKLCVVP------GNVKPGDAVI---------TTQQAG 293 Query 401 GRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVN 460 F G +V + W A ++ C E +N + Sbjct 294 AGIKYFCGMTLKFVANIEGVSVWRVIALQSVDCFVASSTFVEEEHVNR-------MDTFC 346 Query 461 INIVGDFKLNEEIAIILASFSAST-----SAFVETVKGLDYKAFKQIVESCGNFKVTKGK 515 N+ +A++ A +++ S ++ G + + I + V K + Sbjct 347 FNVRNSVTDECRLAMLGAEMTSNVRRQVASGVIDISTGW-FDVYDDIFAESKPWFVRKAE 405 Query 516 AKKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQ 575 G S L L E R V+SI + + ++++L L+ Sbjct 406 DIFGPC-WSALASALKQLKVTTGELVRFVKSICNSAVAVVGGTIQILASVPEKFLNAFDV 464 Query 576 YS---LRLIDAMMFTSDLAT---NNLVVMAYITGGVVQLTSQWLTNIFGTVYEKLKPVLD 629 + + D + T +A + + + +V+L + L + K+K Sbjct 465 FVTAIQTVFDCAVETCTIAGKAFDKVFDYVLLDNALVKLVTTKLKGVRERGLNKVKYATV 524 Query 630 WLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALC 689 + + + ++ + + G V +F+L+ ++ Sbjct 525 VVGSTEEVKSSRVERSTAVLTIANNYSKLFDEGYTVVIGDVAYFVSDGYFRLMASPNSVL 584 Query 690 ADSI 693 ++ Sbjct 585 TTAV 588 >sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 512/2005 OX=693999 GN=1a PE=3 SV=1 Length=4128 Score = 2612 bits (6771), Expect = 0.0, Method: Composition-based stats. Identities = 805/2434 (33%), Positives = 1250/2434 (51%), Gaps = 154/2434 (6%) Query 2000 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 2059 +T T + + ST V S VLK G+D+ C P+ + VV Sbjct 1814 TSTTCDGTCSTKRVVSTPVVNAS----VLKV----GLDDGNCVHGLPLVDRVVSVNGTVI 1865 Query 2060 DVLECNVKTTEVVG-DIILKPANNSLKITEEVGHTDLMAAYVDNSSLT----IKKPNELS 2114 + VV + +L + + + + L + KP +L+ Sbjct 1866 ITNVGDTPGKPVVATENLLLDGVSYTVFQDSTTGVGHYTVFDKEAKLMFDGDVLKPCDLN 1925 Query 2115 RVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVT--RCLNRVCTNYMPYF 2172 + + V P + A FL+ + + T ++R + Y Sbjct 1926 VSPVTSVVVCNNKKIVVQDPVKRVELDASKFLDTMNVASEKFFTFGDFVSRNIIVLIVYL 1985 Query 2173 FTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIW 2232 F+LL + + ++ A +P +SV K+ +A + + I Sbjct 1986 FSLLAICFRALKKRDMKVMAGVPERTGIILKRSV-KYNYKALKFFFRLK-----FQYIKV 2039 Query 2233 FLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCL 2292 FL S+ L +L Y+ + + + +G P C Y +GY NST YC + C +CL Sbjct 2040 FLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYCGN-VLCKICL 2095 Query 2293 SGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFS 2352 G + L + I + L L + + I+F FF +G+ + + + Sbjct 2096 YGYEELSDFTHTRVIWQHLKDP---LIGNILPLFYLVFLIIFGGFFVRIGITYFIMQYIN 2152 Query 2353 Y--FAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCM 2410 A+ + N WL+ L+ P ++M + + + HV+ GC+ +C+ Sbjct 2153 AAGVALGYQDNVWLLHLL-------PFNSMGNIIVVAFIVTRILLFLKHVLFGCDKPSCI 2205 Query 2411 MCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVA 2470 C K + TRV TI+ GV +SFYV ANGGK FCK HN+ CV+CD++ G TFI+D +A Sbjct 2206 ACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTFINDVIA 2265 Query 2471 RDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRAN 2530 +LS K + PT ++ I+D V NG +LY K + + + D L+ Sbjct 2266 PELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACKDVLKNC 2325 Query 2531 NTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKM 2590 N + + +VF+ S + K+A VY+SQL+C+PI L+D AL++ + + + + Sbjct 2326 N----ILTDFVVFNN-SGSNVTQVKNACVYFSQLLCKPIKLVDSALLASLN--VDFSANL 2378 Query 2591 FDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKD 2650 A+V S++F + + + R+ SDV ++ Sbjct 2379 HKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLGLSDVPEEE 2416 Query 2651 VVECLKLSHQSDIEVTGDSCNNYMLTYNKVE-NMTPRDLGACIDCSARHINAQVAKSHNI 2709 + +H+ D+ ++ S NN +++Y K E + D+ C+ A+ +N V N+ Sbjct 2417 FSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNVLTKDNV 2476 Query 2710 ALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNW 2769 ++W KDF++LSE+ RK I K + F LT R + + T +A K G + + Sbjct 2477 PVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKGAGLPSL 2536 Query 2770 LKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEI-----IGYKAIDGGVTRDIASTD 2824 +L + F + LI + V + DFS+++ +K I+ GV + Sbjct 2537 FTRL------YSFFWHLCVLIVVLFVATSLLDFSAQVTSDTQYDFKYIENGVLKVFEKPL 2590 Query 2825 TCFANKHADFDTWFSQRGGS-YTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLH 2883 C N +F+ W + + GS TN + CP++ +PG+P + G L Sbjct 2591 DCVHNAFVNFNEWHNAKFGSIPTNSRRCPIVVGTSDEV--RYIPGVPAGVFLY--GKSLI 2646 Query 2884 FLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSV 2943 F +C+ L + +C+ + CT G+ V YCY V++ + Sbjct 2647 FAMSTIFGTSGLCFDDRGLTD-----PDSCIFNSACTTLSGIGGRNV-YCYREGVVDNAK 2700 Query 2944 AYESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSEAGVCVSTSG 3002 Y SL P + Y LMDG+ I P G +R + T YCR G C S+AGVCV Sbjct 2701 LYSSLLPHSYYRLMDGNHIVLPEIITRGFGIRTIKTQAMTYCRTGECIDSQAGVCVGLDR 2760 Query 3003 RWVLNNDYYRSLPG--VFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL 3060 +V Y PG CG +LL N+ I +S I+ +VA Sbjct 2761 FFV-----YSKTPGSDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCVVAFTAVMA 2815 Query 3061 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV 3120 + F +F+R FG+ S V L +++ +T + + Y L F T V Sbjct 2816 CFAFTKFKRLFGDMSFGVLSVGLCTVVNNLSYVVTQ-----NSIGMLAYATLYFLCTKGV 2870 Query 3121 --SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFNGVSF-ST 3174 S++ H+ + + + L P+W+ +AY+IC F N K +V +F G F + Sbjct 2871 RYSWVWHVGFAISYCFLAPWWVVLAYLIC----ALLEFLPNLFKLKVSTQLFEGDKFVGS 2926 Query 3175 FEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHL 3234 FE AA TF+L+ Y KL + + + +Y A YN+YKY+SG+ YR A HL Sbjct 2927 FESAASGTFVLDMHSYQKLANSI--STEKLKQYCASYNRYKYYSGSASEADYRLACFAHL 2984 Query 3235 AKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 AKA++DF+N D LY PP S S LQ+G RKMA PSG VEGC+V+V+ G TLNGLW Sbjct 2985 AKAMSDFANDHMDKLYTPPTVSYNST-LQAGLRKMAQPSGIVEGCIVRVSYGNLTLNGLW 3043 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 L D V CPRHVI ++ + +Y+ + HNF + +GN+ L VI SM+ +L +KV Sbjct 3044 LGDTVICPRHVIASNTTNV-IDYDHAMSLVRLHNFSISSGNMFLGVISASMRGTLLHIKV 3102 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 + +N TP Y + ++PG +F++LACY+GS +GVY MR N+TI+GSF++G+CGS G+N Sbjct 3103 NQSNVNTPNYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFISGACGSPGYN 3162 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 I+ V FCYMHH+EL +G H G+D++G YG + D+ T Q G +T NV +WLY A Sbjct 3163 INNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQIEGASNLVTENVCSWLYGA 3222 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 +INGDRW+L+ + ++ +N A++ L +VD L A+TG+ V + AS+++L Sbjct 3223 LINGDRWWLSSVSVGVDTYNEWALRNGMTALK--NVDCFSLLVAKTGVDVGRLLASIQKL 3280 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSA-VKRTIKGTHHWLLLTILTSLLV 3593 N G++ILG L DEFT +VV+Q GVT QS V R + +I+ LL Sbjct 3281 HGN-FGGKSILGCTSLCDEFTLSEVVKQMYGVTLQSGKVSRAFRN------ASIVCCLLF 3333 Query 3594 LVQSTQW--SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN 3651 L S S F++ P + II S+ M+ VKHK FL L+LLPSL V+ +N Sbjct 3334 LFLSEMLNHSKLFWINPGYITPVFLAIIVASSALMLLVKHKLLFLQLYLLPSLCIVSGYN 3393 Query 3652 MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVW-T 3710 ++ + ++ D GF + + + ++ L T R + +++ Sbjct 3394 -IFKDYHFYTYMLEEFDY-KVPFGGFNVTGVLNISLCCFVMGLHTFRFL--QTPNKIFSY 3449 Query 3711 LMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFF 3770 ++ VLT++Y YY + + +S +NY + T LA + Sbjct 3450 VVAVLTVLYTYYYS---TDVLGLILTSMSGFTNYWFIGTATYKLATYV-----LPHTSLL 3501 Query 3771 ITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLP 3830 + + ++ ++ +Y LGY Y+G +NR+ +LTLG Y++ VS EF+YM + GL Sbjct 3502 DSFDAIKAVVFLYLLLGYCNCVYYGSLYWINRFCKLTLGCYEFKVSAAEFKYMVANGLRA 3561 Query 3831 PKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQ 3890 P DA L++KL+GVGG+ IK+++VQSK++D+KCT+VVLL L + + ++S+ WA Sbjct 3562 PTGVFDALILSLKLIGVGGRKTIKISSVQSKLTDLKCTNVVLLGCLSNMNIAANSREWAY 3621 Query 3891 CVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSS 3950 CV LHN I L D A E +++LL+ LS A +++L + ++ + LQ++A+ + + Sbjct 3622 CVDLHNKINLCNDAEAAQEMLLALLAFFLSKNSAFGVDELLDSYFNDSSVLQSVAATYVN 3681 Query 3951 LPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMT 4010 LPSY A+ TA+++YE A+ANG ++K+L+ ++NVAKSEFDR+A+ QRKL++MA+QA + Sbjct 3682 LPSYLAYETARQSYEDALANGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAS 3741 Query 4011 QMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKL 4070 QMYK+AR+ ++++KV SAM ++LF MLR+LD +++ I++ A+DG VPL+IIP +A KL Sbjct 3742 QMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILSLAKDGVVPLSIIPAVSATKL 3801 Query 4071 MVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTA 4130 +V+ D +Y YA +W + + D D K V E+ N +LAWPL + Sbjct 3802 NIVVSDIESYSKIQREGCVHYAGVIWSVVDIKDNDGKPVHAKEVVTSNVESLAWPLFLNC 3861 Query 4131 LRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQD 4190 R +KLQNNE+ P ++Q A D NAL Y+ G F+ A +SD D Sbjct 3862 ER---IIKLQNNEIIPSKIKQRPIKAEGE-GVVADGNAL--YSNEGGRTFMYAFISDKPD 3915 Query 4191 LKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATV 4250 LK ++ G+ I ELEPPC+F+ + P GP VKYLYF++ LNNL RG VLG + ATV Sbjct 3916 LKVVKWEFDGGSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVLGFIGATV 3973 Query 4251 RLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV 4310 RLQAG TE NS++L+ CAFAVD K Y D + SG +P+ NCVKML +G GQAIT Sbjct 3974 RLQAGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITN 4033 Query 4311 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 4370 EA+ +Q+S+GGAS CLYCR H++HP+ GFC L+GKYVQ+P DP+ F L+NTVC Sbjct 4034 GVEASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRFVLENTVC 4092 Query 4371 TVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFA 4404 VCG W+ GC+CD+ ++QS D +LN Sbjct 4093 KVCGCWQANGCTCDR---AVIQSVD-SGYLNECG 4122 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 87/403 (22%), Positives = 140/403 (35%), Gaps = 43/403 (11%) Query 1526 EFLKRGDKSVYYTSNPTTF------HLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINL 1579 +FLK + + + F + G V + +L E + ++V T D + Sbjct 1596 KFLKLKGSLLVVVEDSSVFNKISHASVAGYVAKPALVD---TLFEAKPVQVVVTQDQRSF 1652 Query 1580 HTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTD 1639 HT + S TYGQQ G ++ VT +KP + + V+PN V+ ++Y D Sbjct 1653 HTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDK--VVSVVPN-----VDWDKHYGFVD 1705 Query 1640 PSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA 1698 L+HT + VNG ++ +DNNC++ L LQ KF P LQ Sbjct 1706 AGI----FHTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAVCLQLQFANAKFKPKGLQQL 1761 Query 1699 YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQ 1758 + G+ A F + GE D T++ + + +L TC Sbjct 1762 WESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFLKPQGSVEMLRATSTTCDGT 1821 Query 1759 QTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM--MSAPP----- 1811 +T + V + ++ G C G +V ++ + P Sbjct 1822 CSTKRVVSTPVVNASVLKVGLDDG---NCVHGLPLVDRVVSVNGTVIITNVGDTPGKPVV 1878 Query 1812 -AQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKE 1870 + L G + + GHY + KE DG +L P+T V Sbjct 1879 ATENLLLDGVSYTVFQDS-TTGVGHYT-VFDKEAKLMFDGDVLKPCDLNVSPVTSVVVCN 1936 Query 1871 NSYTTTIKPVTYKLDGVVCTEIDPK--LDNYYKKDNSYFTEQP 1911 N PV E+D LD +FT Sbjct 1937 NKKIVVQDPV-------KRVELDASKFLDTMNVASEKFFTFGD 1972 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 73/265 (28%), Positives = 108/265 (41%), Gaps = 19/265 (7%) Query 993 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 1052 G + TI T+ E+ + +V F Y N+ ++ V Sbjct 1268 GRHPIKFNTINTLCYKDVDWEVS----NGSCDVKPFLTY----KNIEFYQGELSALLS-V 1318 Query 1053 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 1112 VVNAAN L HGGG+A AL+ T +QV S+ Y++ NG +KVG ++ Sbjct 1319 NHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE--H 1376 Query 1113 HCLHVVGPNVNKGEDIQLLKSAYE-NFNQHEVLLAPLLSAGIFGADPIHSLR---VCVDT 1168 L+VVGP K +LL AY F Q V L PLLS GIF SL CV Sbjct 1377 SILNVVGPRKGK-HAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGD 1435 Query 1169 VRTNVYLAVFDKNL-YDKLVSSFLEMK--SEKQVEQKIAEIPKEEVKPFITESKPSVEQR 1225 + + L V+SF + V Q++ + E+ P + P R Sbjct 1436 RVCKCFCYTDKERLAIQNFVTSFQTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPCEPFR 1495 Query 1226 KQDDKKIKACVEEVTTTLEETKFLT 1250 + D K + +L+ T+ ++ Sbjct 1496 IEGDAKFYDLTPSMVQSLQVTRLVS 1520 Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 60/188 (32%), Gaps = 14/188 (7%) Query 1651 NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANF 1710 + Y GL + + NNC++++AL+ LQ L + +Q AG + Sbjct 1080 PDVFAFSYASYGGLKVLNQSSNNCWVSSALVQLQLTGL-LDSDEMQL----FNAGRVSPM 1134 Query 1711 CALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMY 1770 G LGDV + L + + S ++ C G + A+ Sbjct 1135 VKRCYESQRAIFGSLGDVSACLESLLKDRDGMSITCTIDCGCGP-GVRVYE----NAIFR 1189 Query 1771 MGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM-SAPPAQYELKHGTFTCASEYTG 1829 L + C K + Q + + A + CA+ Y G Sbjct 1190 FTPLKT---AFPMGRCLICSKTLMHTITQMKGTGIFCRDATALDVDTLVVKPLCAAVYVG 1246 Query 1830 NYQCGHYK 1837 GHY Sbjct 1247 AQDGGHYL 1254 Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 55/380 (14%), Positives = 122/380 (32%), Gaps = 40/380 (11%) Query 653 STCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTH 712 V + +++ F V F+ + + + + + Sbjct 750 LNGVVVFVTKKFRKAGALLQKLYNAFLDTVTSFIKVAGVAFKYCATCVPKIVIN------ 803 Query 713 SKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSE 772 G Y + + L +P + + V + LE + Sbjct 804 --GCYHTVTRLFAK-DLQIPTEDG------VADFNTFNHCVFPVNPTRIETDSLELEEVD 854 Query 773 AVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIE 832 VE + G V ++ T Y + V + F KGG ++ + V Sbjct 855 FVEPGVDGKLVILDDYSFYS-DGTNYYP--SDGKGVVASCFKKKGGGVVTIS-DEVQVRT 910 Query 833 VQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTP 892 + V + +E + D+ L + C +GT++ V L+ + + + Sbjct 911 IDPVYKVRLEYEFE---DETLVKVC---EKAIGTKLK-----VTGDWSNLLETLEKAMDV 959 Query 893 LGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTE 952 + LD + Y+++DE G L + S +P D E ++F+ Sbjct 960 VRQHLD---VPDYFVYDEEGGTDLNLTIMVSQWPLSSDSE------DDFKAVDDEPNANT 1010 Query 953 DDYQGKPLEFGATSAALQPEEEQEE-DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQ 1011 D+ E A + +Q + Q+E + + D + + + + + + + Sbjct 1011 DETVDTFAEDVAETQNVQQDVTQDEVEAVCDLVVKATEEGPIEHEELSEDQKEVQQALAF 1070 Query 1012 LEMELTPVVQTIEVNSFSGY 1031 +E + V + S++ Y Sbjct 1071 IEDKPVVVKPDVFAFSYASY 1090 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 64/209 (31%), Gaps = 39/209 (19%) Query 172 ELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCC 231 +L+ GG VD CG DG P+ + G + +D+ + Sbjct 102 DLVFGRCGGTTIP-VDQFMCGADGAPV-------IQEGDWTF-----MDYFQ-DSNQFTL 147 Query 232 REHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQ-PRVEK 290 + AW +R Y Q I+ V + +KT + P+V K Sbjct 148 NGITYVKAWDVDRKPNDYAKQNVTCIRRITYITDH-----RHVLADGTTMKTARHPKVNK 202 Query 291 KKLDG-------------FMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFV 337 + FMG + V + L+ C+ CG + W GD+ Sbjct 203 SVVLDSPFDQIYKEVGSPFMGNGSTF--VEMLKDPAFFH--ALITCE-CGRSEWTVGDW- 256 Query 338 KATCEFCGTENLTKEGATTCGYLPQNAVV 366 K C T +P V+ Sbjct 257 KGYNSLCCNIKCKPITIVTPKAVPGAVVI 285 >sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 2608 bits (6760), Expect = 0.0, Method: Composition-based stats. Identities = 805/2430 (33%), Positives = 1248/2430 (51%), Gaps = 152/2430 (6%) Query 2000 KATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQK 2059 +T T + + ST V S VLK G+D+ C P+ + VV Sbjct 1814 TSTTCDGTCSTKRVVSTPVVNAS----VLKV----GLDDGNCVHGLPLVDRVVSVNGTVI 1865 Query 2060 DVLECNVKTTEVVG-DIILKPANNSLKITEEVGHTDLMAAYVDNSSLT----IKKPNELS 2114 + VV + +L + + + + L + KP +L+ Sbjct 1866 ITNVGDTPGKPVVATENLLLDGVSYTVFQDSTTGVGHYTVFDKEAKLMFDGDVLKPCDLN 1925 Query 2115 RVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVT--RCLNRVCTNYMPYF 2172 + + V P + A FL+ + + T ++R + Y Sbjct 1926 VSPVTSVVVCNNKKIVVQDPVKRVELDASKFLDTMNVASEKFFTFGDFVSRNIIVLIVYL 1985 Query 2173 FTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIW 2232 F+LL + + ++ A +P +SV K+ +A + + I Sbjct 1986 FSLLAICFRALKKRDMKVMAGVPERTGIILKRSV-KYNYKALKFFFRLK-----FQYIKV 2039 Query 2233 FLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCL 2292 FL S+ L +L Y+ + + + +G P C Y +GY NST YC + C +CL Sbjct 2040 FLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYCGN-VLCKICL 2095 Query 2293 SGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFS 2352 G + L + I + L L + + I+F FF +G+ + + + Sbjct 2096 YGYEELSDFTHTRVIWQHLKDP---LIGNILPLFYLVFLIIFGGFFVRIGITYFIMQYIN 2152 Query 2353 Y--FAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCM 2410 A+ + N WL+ L+ P ++M + + + HV+ GC+ +C+ Sbjct 2153 AAGVALGYQDNVWLLHLL-------PFNSMGNIIVVAFIVTRILLFLKHVLFGCDKPSCI 2205 Query 2411 MCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVA 2470 C K + TRV TI+ GV +SFYV ANGGK FCK HN+ CV+CD++ G TFI+D +A Sbjct 2206 ACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTFINDVIA 2265 Query 2471 RDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRAN 2530 +LS K + PT ++ I+D V NG +LY K + + + D L+ Sbjct 2266 PELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACKDVLKNC 2325 Query 2531 NTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKM 2590 N + + +VF+ S + K+A VY+SQL+C+PI L+D AL++ + + + + Sbjct 2326 N----ILTDFVVFNN-SGSNVTQVKNACVYFSQLLCKPIKLVDSALLASLN--VDFSANL 2378 Query 2591 FDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKD 2650 A+V S++F + + + R+ SDV ++ Sbjct 2379 HKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLGLSDVPEEE 2416 Query 2651 VVECLKLSHQSDIEVTGDSCNNYMLTYNKVE-NMTPRDLGACIDCSARHINAQVAKSHNI 2709 + +H+ D+ ++ S NN +++Y K E + D+ C+ A+ +N V N+ Sbjct 2417 FSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNVLTKDNV 2476 Query 2710 ALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGKIVNNW 2769 ++W KDF++LSE+ RK I K + F LT R + + T +A K G + + Sbjct 2477 PVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKGAGLPSL 2536 Query 2770 LKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEI-----IGYKAIDGGVTRDIASTD 2824 +L + F + LI + V + DFS+++ +K I+ GV + Sbjct 2537 FTRL------YSFFWHLCVLIVVLFVATSLLDFSAQVTSDTQYDFKYIENGVLKVFEKPL 2590 Query 2825 TCFANKHADFDTWFSQRGGS-YTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLH 2883 C N +F+ W + + GS TN + CP++ +PG+P + G L Sbjct 2591 DCVHNAFVNFNEWHNAKFGSIPTNSRRCPIVVGTSDEV--RYIPGVPAGVFLY--GKSLI 2646 Query 2884 FLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSV 2943 F +C+ L + +C+ + CT G+ V YCY V++ + Sbjct 2647 FAMSTIFGTSGLCFDDRGLTD-----PDSCIFNSACTTLSGIGGRNV-YCYREGVVDNAK 2700 Query 2944 AYESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSEAGVCVSTSG 3002 Y SL P + Y LMDG+ I P G +R + T YCR G C S+AGVCV Sbjct 2701 LYSSLLPHSYYRLMDGNHIVLPEIITRGFGIRTIKTQAMTYCRTGECIDSQAGVCVGLDR 2760 Query 3003 RWVLNNDYYRSLPG--VFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCL 3060 +V Y PG CG +LL N+ I +S I+ +VA Sbjct 2761 FFV-----YSKTPGSDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCVVAFTAVMA 2815 Query 3061 AYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDV 3120 + F +F+R FG+ S V L +++ +T + + Y L F T V Sbjct 2816 CFAFTKFKRLFGDMSFGVLSVGLCTVVNNLSYVVTQ-----NSIGMLAYATLYFLCTKGV 2870 Query 3121 --SFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFNGVSF-ST 3174 S++ H+ + + + L P+W+ +AY+IC F N K +V +F G F + Sbjct 2871 RYSWVWHVGFAISYCFLAPWWVVLAYLIC----ALLEFLPNLFKLKVSTQLFEGDKFVGS 2926 Query 3175 FEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHL 3234 FE AA TF+L+ Y KL + + + +Y A YN+YKY+SG+ YR A HL Sbjct 2927 FESAASGTFVLDMHSYQKLANSI--STEKLKQYCASYNRYKYYSGSASEADYRLACFAHL 2984 Query 3235 AKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 AKA++DF+N D LY PP S S LQ+G RKMA PSG VEGC+V+V+ G TLNGLW Sbjct 2985 AKAMSDFANDHMDKLYTPPTVSYNST-LQAGLRKMAQPSGIVEGCIVRVSYGNLTLNGLW 3043 Query 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 L D V CPRHVI ++ + +Y+ + HNF + +GN+ L VI SM+ +L +KV Sbjct 3044 LGDTVICPRHVIASNTTNV-IDYDHAMSLVRLHNFSISSGNMFLGVISASMRGTLLHIKV 3102 Query 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 + +N TP Y + ++PG +F++LACY+GS +GVY MR N+TI+GSF++G+CGS G+N Sbjct 3103 NQSNVNTPNYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFISGACGSPGYN 3162 Query 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 I+ V FCYMHH+EL +G H G+D++G YG + D+ T Q G +T NV +WLY A Sbjct 3163 INNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQIEGASNLVTENVCSWLYGA 3222 Query 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 +INGDRW+L+ + ++ +N A++ L +VD L A+TG+ V + AS+++L Sbjct 3223 LINGDRWWLSSVSVGVDTYNEWALRNGMTALK--NVDCFSLLVAKTGVDVGRLLASIQKL 3280 Query 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSA-VKRTIKGTHHWLLLTILTSLLV 3593 N G++ILG L DEFT +VV+Q GVT QS V R + +I+ LL Sbjct 3281 HGN-FGGKSILGCTSLCDEFTLSEVVKQMYGVTLQSGKVSRAFRN------ASIVCCLLF 3333 Query 3594 LVQSTQW--SLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN 3651 L S S F++ P + II S+ M+ VKHK FL L+LLPSL V+ +N Sbjct 3334 LFLSEMLNHSKLFWINPGYITPVFLAIIVASSALMLLVKHKLLFLQLYLLPSLCIVSGYN 3393 Query 3652 MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTL 3711 ++ + ++ D GF + + + ++ L T R + + + Sbjct 3394 -IFKDYHFYTYMLEEFDY-KVPFGGFNVTGVLNISLCCFVMGLHTFRFL-QTPNKIFSYV 3450 Query 3712 MNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFI 3771 + VLT++Y YY + + +S +NY + T LA + Sbjct 3451 VAVLTVLYTYYYS---TDVLGLILTSMSGFTNYWFIGTATYKLATYV-----LPHTSLLD 3502 Query 3772 TGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPP 3831 + + ++ ++ +Y LGY Y+G +NR+ +LTLG Y++ VS EF+YM + GL P Sbjct 3503 SFDAIKAVVFLYLLLGYCNCVYYGSLYWINRFCKLTLGCYEFKVSAAEFKYMVANGLRAP 3562 Query 3832 KNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQC 3891 DA L++KL+GVGG+ IK+++VQSK++D+KCT+VVLL L + + ++S+ WA C Sbjct 3563 TGVFDALILSLKLIGVGGRKTIKISSVQSKLTDLKCTNVVLLGCLSNMNIAANSREWAYC 3622 Query 3892 VQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSL 3951 V LHN I L D A E +++LL+ LS A +++L + ++ + LQ++A+ + +L Sbjct 3623 VDLHNKINLCNDAEAAQEMLLALLAFFLSKNSAFGVDELLDSYFNDSSVLQSVAATYVNL 3682 Query 3952 PSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQ 4011 PSY A+ TA+++YE A+ANG ++K+L+ ++NVAKSEFDR+A+ QRKL++MA+QA +Q Sbjct 3683 PSYLAYETARQSYEDALANGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAASQ 3742 Query 4012 MYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLM 4071 MYK+AR+ ++++KV SAM ++LF MLR+LD +++ I++ A+DG VPL+IIP +A KL Sbjct 3743 MYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILSLAKDGVVPLSIIPAVSATKLN 3802 Query 4072 VVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTAL 4131 +V+ D +Y YA +W + + D D K V E+ N +LAWPL + Sbjct 3803 IVVSDIESYSKIQREGCVHYAGVIWSVVDIKDNDGKPVHAKEVVTSNVESLAWPLFLNCE 3862 Query 4132 RANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDL 4191 R +KLQNNE+ P ++Q A D NAL Y+ G F+ A +SD DL Sbjct 3863 R---IIKLQNNEIIPSKIKQRPIKAEGE-GVVADGNAL--YSNEGGRTFMYAFISDKPDL 3916 Query 4192 KWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVR 4251 K ++ G+ I ELEPPC+F+ + P GP VKYLYF++ LNNL RG VLG + ATVR Sbjct 3917 KVVKWEFDGGSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVLGFIGATVR 3974 Query 4252 LQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVT 4311 LQAG TE NS++L+ CAFAVD K Y D + SG +P+ NCVKML +G GQAIT Sbjct 3975 LQAGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNG 4034 Query 4312 PEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCT 4371 EA+ +Q+S+GGAS CLYCR H++HP+ GFC L+GKYVQ+P DP+ F L+NTVC Sbjct 4035 VEASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRFVLENTVCK 4093 Query 4372 VCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 VCG W+ GC+CD+ ++QS D +LN Sbjct 4094 VCGCWQANGCTCDR---AVIQSVD-SGYLN 4119 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 87/403 (22%), Positives = 140/403 (35%), Gaps = 43/403 (11%) Query 1526 EFLKRGDKSVYYTSNPTTF------HLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINL 1579 +FLK + + + F + G V + +L E + ++V T D + Sbjct 1596 KFLKLKGSLLVVVEDSSVFNKISHASVAGYVAKPALVD---TLFEAKPVQVVVTQDQRSF 1652 Query 1580 HTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTD 1639 HT + S TYGQQ G ++ VT +KP + + V+PN V+ ++Y D Sbjct 1653 HTVELSTSQTYGQQLGDCVVEDKKVTNLKPVSKDK--VVSVVPN-----VDWDKHYGFVD 1705 Query 1640 PSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDA 1698 L+HT + VNG ++ +DNNC++ L LQ KF P LQ Sbjct 1706 AGI----FHTLDHTMFVFDNNVVNGKRVLRTSDNNCWINAVCLQLQFANAKFKPKGLQQL 1761 Query 1699 YYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQ 1758 + G+ A F + GE D T++ + + +L TC Sbjct 1762 WESYCTGDVAMFVHWLYWITGVEKGEPSDAENTLNIISRFLKPQGSVEMLRATSTTCDGT 1821 Query 1759 QTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVM--MSAPP----- 1811 +T + V + ++ G C G +V ++ + P Sbjct 1822 CSTKRVVSTPVVNASVLKVGLDDG---NCVHGLPLVDRVVSVNGTVIITNVGDTPGKPVV 1878 Query 1812 -AQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKE 1870 + L G + + GHY + KE DG +L P+T V Sbjct 1879 ATENLLLDGVSYTVFQDS-TTGVGHYT-VFDKEAKLMFDGDVLKPCDLNVSPVTSVVVCN 1936 Query 1871 NSYTTTIKPVTYKLDGVVCTEIDPK--LDNYYKKDNSYFTEQP 1911 N PV E+D LD +FT Sbjct 1937 NKKIVVQDPV-------KRVELDASKFLDTMNVASEKFFTFGD 1972 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 73/265 (28%), Positives = 108/265 (41%), Gaps = 19/265 (7%) Query 993 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 1052 G + TI T+ E+ + +V F Y N+ ++ V Sbjct 1268 GRHPIKFNTINTLCYKDVDWEVS----NGSCDVKPFLTY----KNIEFYQGELSALLS-V 1318 Query 1053 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 1112 VVNAAN L HGGG+A AL+ T +QV S+ Y++ NG +KVG ++ Sbjct 1319 NHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE--H 1376 Query 1113 HCLHVVGPNVNKGEDIQLLKSAYE-NFNQHEVLLAPLLSAGIFGADPIHSLR---VCVDT 1168 L+VVGP K +LL AY F Q V L PLLS GIF SL CV Sbjct 1377 SILNVVGPRKGK-HAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGD 1435 Query 1169 VRTNVYLAVFDKNL-YDKLVSSFLEMK--SEKQVEQKIAEIPKEEVKPFITESKPSVEQR 1225 + + L V+SF + V Q++ + E+ P + P R Sbjct 1436 RVCKCFCYTDKERLAIQNFVTSFQTEQPVEPLPVIQEVKGVQLEKPVPDVKVENPCEPFR 1495 Query 1226 KQDDKKIKACVEEVTTTLEETKFLT 1250 + D K + +L+ T+ ++ Sbjct 1496 IEGDAKFYDLTPSMVQSLQVTRLVS 1520 Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 60/188 (32%), Gaps = 14/188 (7%) Query 1651 NHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANF 1710 + Y GL + + NNC++++AL+ LQ L + +Q AG + Sbjct 1080 PDVFAFSYASYGGLKVLNQSSNNCWVSSALVQLQLTGL-LDSDEMQL----FNAGRVSPM 1134 Query 1711 CALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMY 1770 G LGDV + L + + S ++ C G + A+ Sbjct 1135 VKRCYESQRAIFGSLGDVSACLESLLKDRDGMSITCTIDCGCGP-GVRVYE----NAIFR 1189 Query 1771 MGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMM-SAPPAQYELKHGTFTCASEYTG 1829 L + C K + Q + + A + CA+ Y G Sbjct 1190 FTPLKT---AFPMGRCLICSKTLMHTITQMKGTGIFCRDATALDVDTLVVKPLCAAVYVG 1246 Query 1830 NYQCGHYK 1837 GHY Sbjct 1247 AQDGGHYL 1254 Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 55/380 (14%), Positives = 122/380 (32%), Gaps = 40/380 (11%) Query 653 STCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTH 712 V + +++ F V F+ + + + + + Sbjct 750 LNGVVVFVTKKFRKAGALLQKLYNAFLDTVTSFIKVAGVAFKYCATCVPKIVIN------ 803 Query 713 SKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSE 772 G Y + + L +P + + V + LE + Sbjct 804 --GCYHTVTRLFAK-DLQIPTEDG------VADFNTFNHCVFPVNPTRIETDSLELEEVD 854 Query 773 AVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIE 832 VE + G V ++ T Y + V + F KGG ++ + V Sbjct 855 FVEPGVDGKLVILDDYSFYS-DGTNYYP--SDGKGVVASCFKKKGGGVVTIS-DEVQVRT 910 Query 833 VQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTP 892 + V + +E + D+ L + C +GT++ V L+ + + + Sbjct 911 IDPVYKVRLEYEFE---DETLVKVC---EKAIGTKLK-----VTGDWSNLLETLEKAMDV 959 Query 893 LGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTE 952 + LD + Y+++DE G L + S +P D E ++F+ Sbjct 960 VRQHLD---VPDYFVYDEEGGTDLNLTIMVSQWPLSSDSE------DDFKAVDDEPNANT 1010 Query 953 DDYQGKPLEFGATSAALQPEEEQEE-DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQ 1011 D+ E A + +Q + Q+E + + D + + + + + + + Sbjct 1011 DETVDTFAEDVAETQNVQQDVTQDEVEAVCDLVVKATEEGPIEHEELSEDQKEVQQALAF 1070 Query 1012 LEMELTPVVQTIEVNSFSGY 1031 +E + V + S++ Y Sbjct 1071 IEDKPVVVKPDVFAFSYASY 1090 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 64/209 (31%), Gaps = 39/209 (19%) Query 172 ELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCC 231 +L+ GG VD CG DG P+ + G + +D+ + Sbjct 102 DLVFGRCGGTTIP-VDQFMCGADGAPV-------IQEGDWTF-----MDYFQ-DSNQFTL 147 Query 232 REHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQ-PRVEK 290 + AW +R Y Q I+ V + +KT + P+V K Sbjct 148 NGITYVKAWDVDRKPNDYAKQNVTCIRRITYITDH-----RHVLADGTTMKTARHPKVNK 202 Query 291 KKLDG-------------FMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFV 337 + FMG + V + L+ C+ CG + W GD+ Sbjct 203 SVVLDSPFDQIYKEVGSPFMGNGSTF--VEMLKDPAFFH--ALITCE-CGRSEWTVGDW- 256 Query 338 KATCEFCGTENLTKEGATTCGYLPQNAVV 366 K C T +P V+ Sbjct 257 KGYNSLCCNIKCKPITIVTPKAVPGAVVI 285 >sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=1a PE=1 SV=1 Length=4017 Score = 2606 bits (6754), Expect = 0.0, Method: Composition-based stats. Identities = 722/2288 (32%), Positives = 1142/2288 (50%), Gaps = 143/2288 (6%) Query 2156 IVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASF 2215 + + R+ Y L T+ ++K P K+ V Sbjct 1830 MAGDKILRLLLEVFKYLLVL-FMCLRSTKMPKVKVK---PPLAFKDFGAKVRTL------ 1879 Query 2216 NYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTN 2275 NY++ N + LLL + + + Y ++ V+ C G + Y NS+ Sbjct 1880 NYMRQLNKPSVWRYAKLVLLL-IAIYNFFYLFVSIPVVHK-----LTCNGAVQAYKNSS- 1932 Query 2276 VTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----LTAFGLVAEWFLAY 2331 + C SI C CL+ D L + L+ S W+ L+ F +A + Y Sbjct 1933 FIKSAVCGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNY 1992 Query 2332 ILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFY 2391 + R F + ++ + L+ SYF ++ SW + ++V ISA + + Sbjct 1993 V---RCFLMYFVSQYLNLWLSYFG--YVEYSWFL----HVVNFESISAEFVIVVIVVKAV 2043 Query 2392 YVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWN 2451 K H+V C++ +C C + R TR+ +VNG ++ YV+ANG FCK HN+ Sbjct 2044 LALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFY 2100 Query 2452 CVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY------- 2504 C NCD++ +TFI DE+ RDLS K+ + TD+S V V +G Y Sbjct 2101 CKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFYVGDEFTS 2160 Query 2505 --FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYS 2562 +D +K + L + LD+ + GS NV ++A VY+S Sbjct 2161 YDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV--------------RNACVYFS 2206 Query 2563 QLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAK 2622 QL+ +PI +++ L+ D+ S + +F+A N ++FNV + + K L E + Sbjct 2207 QLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL-----DECYR 2259 Query 2623 NVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-- 2680 +L+ STF A +H+ I +T S NN+ + K Sbjct 2260 ACNLNVSFSTFEMAVNN------------------AHRFGILITDRSFNNFWPSKVKPGS 2301 Query 2681 ENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPF 2740 ++ D+G C+ A+ +NA+V +++W +DF +LS +K + + + F Sbjct 2302 SGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNF 2361 Query 2741 KLTCATTRQVVNVV----TTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVM 2796 LT ++ T ++ K G + + QL ++ ++ I L + V Sbjct 2362 SLTFNAVGSDDDLPYERFTESVSPKSGSGFFDVITQLKQIVILVFVFIFICGLCSVYSVA 2421 Query 2797 SKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGS-YTNDKACPLIA 2855 ++ S+E Y I G+ + T +C N + F WF + G T K+CP++ Sbjct 2422 TQSYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAKYGFIPTFGKSCPIVV 2481 Query 2856 A-VITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACV 2914 V E +P +P + G L F V N+CY + D CV Sbjct 2482 GTVFDLENMRPIPDVPAYVSIV--GRSLVFAINAAFGVTNMCYDHTGNAVSKDSYFDTCV 2539 Query 2915 LAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVR 2974 CT G V YC ++EG+ Y L PD Y G++++ P +R Sbjct 2540 FNTACTTLTGLGGTIV-YCAKQGLVEGAKLYSDLMPDYYYEHASGNMVKLPAIIRGLGLR 2598 Query 2975 VVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPL 3034 V T + YCR G C S+AG C +V +N++ G CG + N+F Sbjct 2599 FVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGN---GYICGNSVLGFFKNVFKLF 2655 Query 3035 IQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCL 3094 + + S +++ I+A + + Y ++F++ FG+ + ++ + +++ + Sbjct 2656 NSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFV 2715 Query 3095 TPVYSFLPGVYSVIYLYLTFYLTNDVSF--LAHIQWMVMFTPLVPFWITIAYIICISTKH 3152 T + +IY + +++T +++ + +++ + + P+++ AYI+ Sbjct 2716 TQ-----NTFFMIIYAIVYYFITRKLAYPGILDAGFIIAYINMAPWYVITAYILVF---- 2766 Query 3153 FYWFFSNYLKRRV---VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYL 3208 Y + K +V +F G F FE AA+ TF+++ Y + + + + Y Sbjct 2767 LYDSLPSLFKLKVSTNLFEGDKFVGNFESAAMGTFVIDMRSYETIVNST--SIARIKSYA 2824 Query 3209 ALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRK 3268 +NKYKY++G+M YR A HL KAL D+S + +D+LY PP S+ S LQSG RK Sbjct 2825 NSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLYTPPTVSVNST-LQSGLRK 2883 Query 3269 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHN 3328 MA PSG VE C+V+V+ G LNGLWL D V CPRHVI + + NYE+ + HN Sbjct 2884 MAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRV-INYENEMSSVRLHN 2942 Query 3329 FLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3388 F V NV L V+ + L LKV+ NP TP++KF I+ G++F++LACY G P V Sbjct 2943 FSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSV 3002 Query 3389 YQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPF 3448 Y MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL G H G++ EG YG + Sbjct 3003 YGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGY 3062 Query 3449 VDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3508 D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + +L +N A ++ L+ Sbjct 3063 EDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSS- 3121 Query 3509 HVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTF 3568 D L+A+TG +V + S+ L G GRTIL L DEFTP +V+RQ GV Sbjct 3122 -TDAFSMLAAKTGQSVEKLLDSIVRL-NKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNL 3179 Query 3569 QSAVKRTIKGTHHWLLLTILTSLLVL-VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM 3627 Q+ ++ + ++T +T L ++ ++ F ++ +S + Sbjct 3180 QAGKVKSF----FYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVS 3235 Query 3628 FVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYAS 3687 +KHK F F+LPS+ V N+ + S+ + + ++ +T ++ ++ Sbjct 3236 GIKHKMLFFMSFVLPSVILVTAHNL-FWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVF 3294 Query 3688 AVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQA----------ISMWALI 3737 ++ + + R + + +L + V D+ ++M +I Sbjct 3295 CFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMI 3354 Query 3738 ISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLF 3797 +S+T+ VV +A IV + F ++CI +VY GY CY+G+ Sbjct 3355 VSLTTKDWMVVIASYRIAYYIVVCVM--PSAFVSDFGFMKCISIVYMACGYLFCCYYGIL 3412 Query 3798 CLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVAT 3857 +NR+ +T GVY + VS E +YM + L PKN+ DA L+ KL+GVGGK IK++T Sbjct 3413 YWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKIST 3472 Query 3858 VQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSV 3917 VQSK++++KCT+VVLL +L ++ VES+SK W CV LHN+I L D EK+++L++ Sbjct 3473 VQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPEIVLEKLLALIAF 3532 Query 3918 LLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVL 3977 LS D+++L E +N LQ++AS +++LPS+ A A+ E+A N S +L Sbjct 3533 FLSKHNTCDLSELIESYFENTTILQSVASAYAALPSWIALEKARADLEEAKKNDVSPQIL 3592 Query 3978 KKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4037 K+L K+ N+AKS+F+R+A++Q+KL+KMA+QA MYK+AR+ D+++K+ SAM ++LF ML Sbjct 3593 KQLTKAFNIAKSDFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGML 3652 Query 4038 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWE 4097 +KLD ++N II+ AR+G +PL+IIP +A +L+V+ P + YA A+W Sbjct 3653 KKLDMSSVNTIIDQARNGVLPLSIIPAASATRLVVITPSLEVFSKIRQENNVHYAGAIWT 3712 Query 4098 IQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAG 4157 I +V DA+ V L E++ N NL WPL +T R KLQNNE+ P L++ + A Sbjct 3713 IVEVKDANGSHVHLKEVTAANELNLTWPLSITCER---TTKLQNNEIMPGKLKERAVRAS 3769 Query 4158 TTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVT 4217 T + A + G F+ A ++ +LK+ ++ + I ELE P RF Sbjct 3770 ATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESN--NDIIPIELEAPLRFYV 3827 Query 4218 DTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAA 4277 D GP+VKYLYF+K LN L RG VLG + ATVRLQAG TE P+NS++L+ CAF+ D A Sbjct 3828 DGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSSLLTLCAFSPDPA 3887 Query 4278 KAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP 4337 KAY D + G QP+ NCVKML G G A+T EAN Q+S+GGAS C+YCRCH++HP Sbjct 3888 KAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVEANTQQDSYGGASVCIYCRCHVEHP 3947 Query 4338 NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQ 4397 G C KGK+VQIPT DP+ F ++N VC VCG W GC CD R M Q Sbjct 3948 AIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVVCGCWLNNGCMCD--RTSMQSFTVDQ 4004 Query 4398 SFLNGFAV 4405 S+LN V Sbjct 4005 SYLNECGV 4012 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 85/410 (21%), Positives = 154/410 (38%), Gaps = 48/410 (12%) Query 874 VVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEE 933 +V + + L P+ E G+ D + T G + S P+ Sbjct 1171 IVLERAVFKLTPLKESFN-YGVCGDCMQVNTCRFLSVEGSGVFVHDI-LSKQTPEAMFVV 1228 Query 934 GDCEEEEFEPSTQYEYGTEDDYQG---------KPLEFGATSAALQPEE---EQEEDWLD 981 + +TQ + DD + KPL+ ++ L + E Sbjct 1229 KPVMHAVYTGTTQNGHYMVDDIEHGYCVDGMGIKPLKKRCYTSTLFINANVMTRAEKPKQ 1288 Query 982 DDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIK 1041 + + V QQ E+N+++ + ++ P+ + + P + +++ + G L + N Sbjct 1289 EFKVEKVEQQPIVEENKSSIEKEEIQ-SPKNDDLILPFYKAGKLSFYQGALDVLINF--- 1344 Query 1042 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 1101 ++P V+VNAAN LKH GGVA A++ T + S DY+ N + G Sbjct 1345 ----------LEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGN 1394 Query 1102 SCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQH-EVLLAPLLSAGIFGADPIH 1160 + L+ VGP L + Y+ + +L PL+S GIF Sbjct 1395 AVFFENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIF------ 1448 Query 1161 SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITES 1218 VR L K + D+ ++ F+ E+Q + IP + + Sbjct 1449 -------NVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHE 1501 Query 1219 KPSVEQRKQDDKKIKACV----EEVTTTLEETKFLTENLLLYIDINGNLH 1264 + SV K +++K V ++VT L + + ++ IDI+ H Sbjct 1502 RVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAH 1551 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 124/352 (35%), Gaps = 62/352 (18%) Query 1610 HNSHEGKTFYVLPNDDTL-RVEAFEYYHTTDP----SFLGRYMSALNHTKKWKYPQVNGL 1664 + E +T V T V+ E DP + +K +NG Sbjct 1024 SSQEEVETVEVADITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPSLPPFKTTNLNGK 1083 Query 1665 TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGE 1724 +K DNNC++ LQ + FN +A+ + + G+ +F L A G Sbjct 1084 IILKQGDNNCWINACCYQLQAFDF-FN----NEAWEKFKKGDVMDFVNLCYAATTLARGH 1138 Query 1725 LGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQ 1784 GD + + + + K VL C CG+++ L+ AV + L E F GV Sbjct 1139 SGDAEYLLELMLN--DYSTAKIVLAAKCG-CGEKEIVLE--RAVFKLTPLK-ESFNYGVC 1192 Query 1785 IPC----TCGKQATKY-------LVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQC 1833 C TC + + ++ +++P M P + + YTG Q Sbjct 1193 GDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAV----------YTGTTQN 1242 Query 1834 GHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEID 1893 GHY + E YC+DG + K + + + +F N T KP V E Sbjct 1243 GHY-MVDDIEHGYCVDG-MGIKPLKKRCYTSTLFINANVMTRAEKPKQEF--KVEKVEQQ 1298 Query 1894 PKLDN---------------------YYKKDNSYFTEQPIDLVPNQPYPNAS 1924 P ++ +YK F + +D++ N P+ Sbjct 1299 PIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLEPDVI 1350 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 66/367 (18%), Positives = 115/367 (31%), Gaps = 32/367 (9%) Query 1554 DNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQF-GPTYLDGADVTKIKPHNS 1612 D + + +I V T DN+N V TYG+Q G + DVT P Sbjct 1475 DQERQTIENFFSCSIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAF 1534 Query 1613 HEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADN 1672 G+ + ++ +Y D + K++ + K DN Sbjct 1535 DVGQKV-----IKAIDIDWQAHYGFRDAAAFSASSH---DAYKFEVVTHSNFIVHKQTDN 1586 Query 1673 NCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETM 1732 NC++ L LQ+++ ++ P ++ + + F ++ GE GD + Sbjct 1587 NCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDAELML 1646 Query 1733 SYLFQHANLDSCKRVLNVV-CKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGK 1791 L + D V + C C + G + G C G Sbjct 1647 HKLGDLMDNDCEIIVTHTTACDKC-AKVEKFVGPVVAAPLAI-------HGTDETCVHGV 1698 Query 1792 QATKYLVQQESPFVMMS--APPAQYELKHGTFTCASEYTGNYQCGHYKH-------ITSK 1842 + Q + + S P L+ + C Y+G+ + GHY + + Sbjct 1699 SVNVKVTQIKGTVAITSLIGPIIGEVLEATGYIC---YSGSNRNGHYTYYDNRNGLVVDA 1755 Query 1843 ETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKK 1902 E Y + LL ++ V K + K+ + KL Sbjct 1756 EKAYHFNRDLLQVTTAIASNF--VVKKPQAEERPKNCAFNKVAASPKIVQEQKLLAIESG 1813 Query 1903 DNSYFTE 1909 N TE Sbjct 1814 ANYALTE 1820 Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 50/251 (20%), Positives = 77/251 (31%), Gaps = 43/251 (17%) Query 174 MRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCRE 233 ++ G YVD CG DG P+ + D+ + Sbjct 102 LKIARTGRGAIYVDQYMCGADGKPV---------------IEGDFKDYF-GDEDIIEFEG 145 Query 234 HEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKL 293 E+ AW T R EK QT F I+ + N + P+ + N + + P V+K Sbjct 146 EEYHCAWTTVRDEKPLNQQTLFTIQEIQY----NLDIPHKL--PNCATRHVAPPVKKNSK 199 Query 294 DGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATC-EFCGTENLTKE 352 + +Y + S M C + T F+ AT CG+E+ Sbjct 200 IVLSEDYKKLY---------DIFGSPFMGNGDCLSKCFDTLHFIAATLRCPCGSESSGVG 250 Query 353 GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFS 412 T C S +L + + T + G F CV Sbjct 251 DWT-----------GFKTACCGLSGKVKGVTLGDIKPGDAVVTSMSAGKGVKFFANCVLQ 299 Query 413 YVGCHNKCAYW 423 Y G + W Sbjct 300 YAGDVEGVSIW 310 Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 50/302 (17%), Positives = 96/302 (32%), Gaps = 27/302 (9%) Query 748 PTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMM 807 V+ + +P+ +E V+ G + I G + +D Y Sbjct 811 DVPVVDNGTISTADWSEPILLEPAEYVKPKNNGNVIVIAGYTFYKDEDEHFYP--YGFGK 868 Query 808 VTNNTFTLKGGAPTKVTFGDD-TVIEVQGYKSVNITFELD-ERIDKVLNEKCSA---YTV 862 + + GG V+F ++ V E+ V + FE D E + VL +T Sbjct 869 IVQRMYNKMGGGDKTVSFSEEVDVQEIAPVTRVKLEFEFDNEIVTGVLERAIGTRYKFTG 928 Query 863 ELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYC 922 E E DA+ TL G++L+ + +++D G F + + Sbjct 929 TTWEEFEESISEELDAIFDTL-------ANQGVELEGY-----FIYDTCGGFDIKNPDGI 976 Query 923 SFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDD 982 D + + E + E+D + + +E + +EE E + D Sbjct 977 MISQYDINITADEKSEVSASSEEEEVESVEEDPENEIVEASEGAEGTSSQEEVETVEVAD 1036 Query 983 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKN 1042 + + V+VQ + + + F L + +K Sbjct 1037 ITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPS-------LPPFKT-TNLNGKIILKQ 1088 Query 1043 AD 1044 D Sbjct 1089 GD 1090 >sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 2602 bits (6745), Expect = 0.0, Method: Composition-based stats. Identities = 722/2280 (32%), Positives = 1136/2280 (50%), Gaps = 138/2280 (6%) Query 2163 RVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPN 2222 ++ + F LL+ +S ++K P +N V NY++ N Sbjct 1859 KILRFLLEVFKYLLVVFMCLRKSKMPKVKVKPPHVF-RNLGAKVRTL------NYVRQLN 1911 Query 2223 FSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYC 2282 L I LLL + L Y ++ V+ C+G + Y NS+ + C Sbjct 1912 KPALWRYIKLVLLL-IALYHFFYLFVSIPVVHK-----LACSGSVQAYSNSS-FVKSEVC 1964 Query 2283 TGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----LTAFGLVAEWFLAYILFTRFF 2338 SI C CL+ D L + L+ S W+ L+ F +A + Y+ + Sbjct 1965 GNSILCKACLASYDELADFDHLQVSWDYKSDPLWNRVIQLSYFIFLAVFGNNYVRCLLMY 2024 Query 2339 YVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYV 2398 ++ + L+ SYF ++ SW + ++V IS + + K Sbjct 2025 ---FVSQYLNLWLSYFG--YVKYSWFL----HVVNFESISVEFVIIVVVFKAVLALK--- 2072 Query 2399 HVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTF 2458 H+ CN+ +C C K R TR+ +VNG ++ YV+ANG CK HN+ C NCD++ Sbjct 2073 HIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGKLCKKHNFYCKNCDSY 2132 Query 2459 CAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY---------FDKAG 2509 TFI DE+ RDLS K+ + TD+S V V +G Y +D Sbjct 2133 GFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYRFYVGEEFTAYDYDVKH 2192 Query 2510 QKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPI 2569 +K + L LD+ N GS +S ++ VY+SQL+ +PI Sbjct 2193 KKYSSQEVLKTMFLLDDFIVYNPSGS--------------SLASVRNVCVYFSQLIGRPI 2238 Query 2570 LLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV 2629 +++ L+ D+ S + +F+A N ++FNV + + K L E K +LD Sbjct 2239 KIVNSELLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL-----EECYKLCNLDVT 2291 Query 2630 LSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV--ENMTPRD 2687 STF A +H+ I +T S NN+ + K ++ D Sbjct 2292 FSTFEMAINN------------------AHRFGILITDRSFNNFWPSKIKPGSSGVSAMD 2333 Query 2688 LGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATT 2747 +G C+ A+ +NA+V +++W +DF +LS +K + + + F LT Sbjct 2334 IGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEEGVNFSLTFNAV 2393 Query 2748 RQVVNVV----TTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFS 2803 ++ T ++ K G + LKQL ++ + ++ L + V ++ S Sbjct 2394 GSDEDLPYERFTESVSAKSGSGFFDVLKQLKQLFWCLVLFITLYGLCSVYSVATQSYIDS 2453 Query 2804 SEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGS-YTNDKACPLIAA-VITRE 2861 +E Y I GV + + C N + F WF + G T DK+CP++ V Sbjct 2454 AEGYDYMVIKNGVVQSFDDSINCVHNTYKGFAVWFKAKHGFVPTFDKSCPIVLGTVFDLG 2513 Query 2862 VGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTI 2921 +P +P + G L F V N+CY + + CV + CT Sbjct 2514 NMRPIPDVPAYVALV--GRSLVFAINAAFGVTNVCYDHTGAAVSKNSYFDTCVFNSACTT 2571 Query 2922 FKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDS 2981 G V YC ++EG+ Y L PD Y G++++ P +R V T + Sbjct 2572 LTGIGGTVV-YCAKQGLVEGAKLYSELLPDYYYEHASGNMVKIPAIIRSFGLRFVKTQAT 2630 Query 2982 EYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGAL 3041 YCR G C S+AG C +V + ++ G CG + N+F + + Sbjct 2631 TYCRVGECTESQAGFCFGGDNWFVYDKEFG---DGYICGSSTLGFFKNVFALFNSNMSVV 2687 Query 3042 DISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFL 3101 S +++A ++A + + Y ++F++ FG+ + +V + +++ +T Sbjct 2688 ATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLVVNNVSYFVTQ----- 2742 Query 3102 PGVYSVIYLYLTFYLTNDVSF--LAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSN 3159 + ++Y + ++ T +++ + +++ + + P+++ + YI+ Y + Sbjct 2743 NTFFMIVYAIIYYFTTRKLAYPGVLDAGFIIAYLNMAPWYVLVLYIMVF----LYDSLPS 2798 Query 3160 YLKRRV---VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYK 3215 K +V +F G F +FE AA+ TF+++ Y L + L + Y +NKYK Sbjct 2799 LFKLKVTTNLFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYK 2856 Query 3216 YFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGK 3275 Y++G+M YR A HL KAL D+S S +D+LY PP S+ S LQSG RKMA PSG Sbjct 2857 YYTGSMGEADYRMACYAHLGKALMDYSVSRNDMLYTPPTVSVNST-LQSGLRKMAQPSGV 2915 Query 3276 VEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGN 3335 VE C+V+V G LNGLWL D V CPRHVI + + NYE+ L HNF + N Sbjct 2916 VEPCIVRVAYGNNVLNGLWLGDEVICPRHVIASDTSRV-INYENELSSVRLHNFSIAKNN 2974 Query 3336 VQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRP 3395 L V+ + L LKV+ NP TP++KF ++PG++F++LACY G P VY MR Sbjct 2975 AFLGVVSAKYKGVNLVLKVNQVNPNTPEHKFKSVRPGESFNILACYEGCPGSVYGVNMRS 3034 Query 3396 NFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQ 3455 TIKGSF+ G+CGSVG+ ++ + F YMHH+EL G H G++LEG YG + D+ + Q Sbjct 3035 QGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQ 3094 Query 3456 AAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGP 3515 GT+ + NV+A+LYAA+ING+RWF+ + TL +N A ++ + D Sbjct 3095 LEGTNVMSSDNVVAFLYAALINGERWFVTNTSMTLESYNAWAKTNSFTEIVS--TDAFNM 3152 Query 3516 LSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRT 3575 L+A+TG +V + + L G GRTIL L DEFTP +V+RQ GV QS ++ Sbjct 3153 LAAKTGYSVEKLLECIVRL-NKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQSGKVKS 3211 Query 3576 IKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAF 3635 I + + L T ++ ++ +S + +KHK F Sbjct 3212 IFYPMMTAIAILFAFWLEFFMYTPFT---WINPTFVSVVLAITTLVSVLLVAGIKHKMLF 3268 Query 3636 LCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILM 3695 F++PS+ N+V+ ++ + ++ V+T+ ++ ++ VV+ ++ Sbjct 3269 FMSFVMPSVILATAHNVVW-DMTYYESLQVLVENVNTTFLPVDMQGVMLALFCVVVFVIC 3327 Query 3696 TARTVYDDGARR------VWTLMNVLTLVYKVYYGNALD----QAISMWALIISVTSNYS 3745 T R + ++ + N++ L+ + D ++M ++IS+T+ Sbjct 3328 TIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTDDHFLLCLVNMLTMLISLTTKDW 3387 Query 3746 GVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFR 3805 VV +A IV ++ P F ++C+ ++Y GY CY+G+ +NR+ Sbjct 3388 FVVFASYKVAYYIVVYVMQ--PAFVQDFGFVKCVSIIYMACGYLFCCYYGILYWVNRFTC 3445 Query 3806 LTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDV 3865 +T GVY + VS E +YM + L PK + DA L+ KL+G+GG IK++TVQSK++++ Sbjct 3446 MTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFKLMGIGGGRNIKISTVQSKLTEM 3505 Query 3866 KCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAV 3925 KCT+VVLL +L ++ VES+SK W CV LHN+I L D EK+++L++ LS Sbjct 3506 KCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPDAVLEKLLALIAFFLSKHNTC 3565 Query 3926 DINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLN 3985 D++ L E +N LQ++AS +++LPS+ A+ A+ E+A N S +LK+L K+ N Sbjct 3566 DLSDLIESYFENTTILQSVASAYAALPSWIAYEKARADLEEAKKNDVSPQLLKQLTKACN 3625 Query 3986 VAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDAL 4045 +AKSEF+R+A++Q+KL+KMA+QA MYK+AR+ D+++K+ SAM ++LF ML+KLD ++ Sbjct 3626 IAKSEFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSV 3685 Query 4046 NNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDAD 4105 N II AR+G +PL+IIP +A +L+VV P+ YA A+W I +V DA+ Sbjct 3686 NTIIEQARNGVLPLSIIPAASATRLIVVTPNLEVLSKVRQENNVHYAGAIWSIVEVKDAN 3745 Query 4106 SKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTD 4165 V L E++ N N+ WPL +T R KLQNNE+ P L++ + A T Sbjct 3746 GAQVHLKEVTAANELNITWPLSITCER---TTKLQNNEILPGKLKEKAVKASATIDGDAY 3802 Query 4166 DNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKV 4225 + A + G F+ A ++ +LK+ ++ + I ELE P RF D GP+V Sbjct 3803 GSGKALMASEGGKSFIYAFIASDSNLKYVKWESN--NDVIPIELEAPLRFYVDGVNGPEV 3860 Query 4226 KYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLA 4285 KYLYF+K LN L RG VLG + ATVRLQAG TE P+NS +L+ CAFA D AKAY D + Sbjct 3861 KYLYFVKSLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSGLLTLCAFAPDPAKAYVDAVK 3920 Query 4286 SGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDL 4345 G QP+TNCVKML G G AIT E+N Q+S+GGAS C+YCRCH++HP G C Sbjct 3921 RGMQPVTNCVKMLSNGAGNGMAITNGVESNTQQDSYGGASVCIYCRCHVEHPAIDGLCRF 3980 Query 4346 KGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 KGK+VQ+PT DP+ F ++N VC VCG W GC CD R + + QS+LN V Sbjct 3981 KGKFVQVPTG-TQDPIRFCIENEVCVVCGCWLTNGCMCD--RTSIQGTTIDQSYLNECGV 4037 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 62/290 (21%), Positives = 119/290 (41%), Gaps = 25/290 (9%) Query 999 TTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVV 1058 T +T+VE +E + Q+ + Y V D+ ++P V+V Sbjct 1305 TAKSKTMVEPPVPVEDKCVEDCQSPKDLILPFYK--AGKVSFYQGDLDVLINFLEPDVLV 1362 Query 1059 NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVV 1118 NAAN L+H GGVA A++ T + S +Y+ ++ + G + + L+ V Sbjct 1363 NAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAV 1422 Query 1119 GPNVNKGEDIQLLKSAYENFNQHE-VLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAV 1177 GP L + Y+ + + +L PL+S GIF V+ V L Sbjct 1423 GPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIF-------------KVKLEVSLQC 1469 Query 1178 FDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITESKPSVEQRKQDDKKIKAC 1235 K + D+ ++ F+ E+ + IP + + + + + SV K +++K Sbjct 1470 LLKTVTDRDLNVFVYTDQERVTIENFFNGTIPIKVTEDTVNQKRVSVALDKTYGEQLKGT 1529 Query 1236 V----EEVTTTLEETKFLTENLLLYIDINGNLH---PDSATLVSDIDITF 1278 V ++VT L + E ++ +D++ N + P++A + + Sbjct 1530 VVIKDKDVTNQLPSVSDVGEKVVKALDVDWNAYYGFPNAAAFSASSHDAY 1579 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 66/335 (20%), Positives = 109/335 (33%), Gaps = 27/335 (8%) Query 1554 DNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQF-GPTYLDGADVTKIKPHNS 1612 D + + TI + T D +N V + TYG+Q G + DVT P S Sbjct 1486 DQERVTIENFFNGTIPIKVTEDTVNQKRVSVALDKTYGEQLKGTVVIKDKDVTNQLPSVS 1545 Query 1613 HEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADN 1672 G+ L V+ YY + + ++ N K DN Sbjct 1546 DVGEKV-----VKALDVDWNAYYGFPNAAAFSASSH---DAYEFDVVTHNNFIVHKQTDN 1597 Query 1673 NCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETM 1732 NC++ L LQ+++ + P ++ + + A F ++ T G+ GD T+ Sbjct 1598 NCWVNAICLALQRLKPTWKFPGVKSLWDAFLTRKTAGFVHMLYHISGLTKGQPGDAELTL 1657 Query 1733 SYLFQHANLDSCKRVLNVV-CKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGK 1791 L + DS V + C C + T G ++ G C G Sbjct 1658 HKLVDLMSSDSAVTVTHTTACDKC-AKVETFTG-------PVVAAPLLVCGTDEICVHGV 1709 Query 1792 QATKYLVQQESPFVMMS--APPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCID 1849 + + S P + + C YTG GHY + ++ L D Sbjct 1710 HVNVKVTSIRGTVAITSLIGPVVGDVIDATGYIC---YTGLNSRGHYTYYDNRNGLMV-D 1765 Query 1850 GALLTKSSEYKGPITDVF---YKENSYTTTIKPVT 1881 + +T + N+ I P T Sbjct 1766 ADKAYHFEKNLLQVTTAIASNFVANTPKKEIMPKT 1800 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 120/367 (33%), Gaps = 48/367 (13%) Query 1574 VDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFE 1633 V ++ T V + +Q + + P L + + + + Sbjct 1025 VSSVEGETVSVVDVEDFVEQVSLVEENNVLTPAVNPDE--------QLSSVEKKDEVSAK 1076 Query 1634 YYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPP 1693 +K +NG +K DNNC++ LQ + FN Sbjct 1077 NDPWAAAVDEQEAEQPKPSLTPFKTTNLNGKIILKQQDNNCWINACCYQLQAFDF-FN-- 1133 Query 1694 ALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCK 1753 D + + + F A G+ GD + + + + K L+ C Sbjct 1134 --HDLWDGFKKDDVMPFVDFCYAALTLKQGDSGDAEYLLETMLN--DYSTAKVTLSAKCG 1189 Query 1754 TCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPC----TCGKQATKYL-------VQQES 1802 CG ++ L+ V + L +FK GV C C + + +++++ Sbjct 1190 -CGVKEIVLE--RTVFKLTPL-RNEFKYGVCGDCKQINMCKFASVEGSGVFVHDRIEKQT 1245 Query 1803 PFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGP 1862 P P + + YTG Q GHY YC+DG + K ++K Sbjct 1246 PVSQFIVTPTMHAV----------YTGTTQSGHYMIEDCI-HDYCVDG-MGIKPRKHKFY 1293 Query 1863 ITDVFYKENSYTTTIK-----PVTYKLDGVVCTEIDPKLD-NYYKKDNSYFTEQPIDLVP 1916 + +F N T K PV + V + L +YK F + +D++ Sbjct 1294 TSTLFLNANVMTAKSKTMVEPPVPVEDKCVEDCQSPKDLILPFYKAGKVSFYQGDLDVLI 1353 Query 1917 NQPYPNA 1923 N P+ Sbjct 1354 NFLEPDV 1360 Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 55/313 (18%), Positives = 108/313 (35%), Gaps = 19/313 (6%) Query 745 ETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAP 804 +T V ++ P+ ++ VE G + I G + +D Y Sbjct 808 KTASVPVTNSGIITTDDWSDPILLEPADYVEPKDNGDVIVIAGYTFYKDEDDHFYP--YG 865 Query 805 NMMVTNNTFTLKGGAPTKVTFGDD-TVIEVQGYKSVNITFELD-ERIDKVLNEKCSAYTV 862 + MV + GG V+F D+ V E++ V + FE D E + +VL + Sbjct 866 SGMVVQKMYNKMGGGDKSVSFSDNVNVREIEPVTRVRLEFEFDNEVVTQVLEKVIGTKYK 925 Query 863 ELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE-WSMATYYLFDESGEFKLASHMY 921 +GT EF D++ + L + + L G++L+ + T FD + + Y Sbjct 926 FIGTTWEEF----EDSISEKLDKIFDTLAEQGVELEGYFIYDTCGGFDINNPDGVMISQY 981 Query 922 CSFYPPDEDEEEGDCEEE-------EFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEE 974 D+ + E+ E + + + DD + G T + + E+ Sbjct 982 DLNTAADDKSDSDASVEDISLISDNEDVEQIEEDNTSTDDAEDVSSVEGETVSVVDVEDF 1041 Query 975 QEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVE-VQPQLEMELTPVVQTIEVNSFSGYL- 1032 E+ L +++ + E + + V + S + + Sbjct 1042 VEQVSLVEENNVLTPAVNPDEQLSSVEKKDEVSAKNDPWAAAVDEQEAEQPKPSLTPFKT 1101 Query 1033 -KLTDNVYIKNAD 1044 L + +K D Sbjct 1102 TNLNGKIILKQQD 1114 Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 68/210 (32%), Gaps = 35/210 (17%) Query 174 MRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCRE 233 ++ G YVD CG DG P+ E D+ V Sbjct 102 LKFARTGNGAIYVDQYMCGADGKPV---------------IEGEFKDYF-GDEDVIIYEG 145 Query 234 HEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKL 293 E+ AW T R EK QT I+ + N + P+ + N I+ + P V+K Sbjct 146 EEYHCAWLTVRDEKPLWQQTLLTIREIQY----NLDIPHKL--PNCAIREVAPPVKKNSK 199 Query 294 DGFMGRIRSVYPV---------ASPNECNQMCLS--TLMKCDHCGETSWQTGDFVKATCE 342 R +Y + S N C +KC CG S GD+ Sbjct 200 VVLSEEYRKLYDIFGSPFMGNGDSLNTCFDSLHFIAATLKC-PCGAESSGVGDWTGFKTA 258 Query 343 FCGTENLTKEGATTCGYLPQNAVVKIYCPA 372 CG K G T P +A+V Sbjct 259 CCGLHGKVK-GVTLGAVKPGDAIVTSMSAG 287 >sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 2602 bits (6745), Expect = 0.0, Method: Composition-based stats. Identities = 721/2284 (32%), Positives = 1141/2284 (50%), Gaps = 143/2284 (6%) Query 2156 IVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASF 2215 + + R+ Y L T+ ++K P K+ V Sbjct 1830 MAGDKILRLLLEVFKYLLVL-FMCLRSTKMPKVKVK---PPLAFKDFGAKVRTL------ 1879 Query 2216 NYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTN 2275 NY++ N + LLL + + + Y ++ V+ C G + Y NS+ Sbjct 1880 NYMRQLNKPSVWRYAKLVLLL-IAIYNFFYLFVSIPVVHK-----LTCNGAVQAYKNSS- 1932 Query 2276 VTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWD----LTAFGLVAEWFLAY 2331 + C SI C CL+ D L + L+ S W+ L+ F +A + Y Sbjct 1933 FIKSAVCGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNY 1992 Query 2332 ILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFY 2391 + R F + ++ + L+ SYF ++ SW + ++V ISA + + Sbjct 1993 V---RCFLMYFVSQYLNLWLSYFG--YVEYSWFL----HVVNFESISAEFVIVVIVVKAV 2043 Query 2392 YVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWN 2451 K H+V C++ +C C + R TR+ +VNG ++ YV+ANG FCK HN+ Sbjct 2044 LALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFY 2100 Query 2452 CVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY------- 2504 C NCD++ +TFI DE+ RDLS K+ + TD+S V V +G Y Sbjct 2101 CKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFYVGDEFTS 2160 Query 2505 --FDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYS 2562 +D +K + L + LD+ + GS NV ++A VY+S Sbjct 2161 YDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV--------------RNACVYFS 2206 Query 2563 QLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAK 2622 QL+ +PI +++ L+ D+ S + +F+A N ++FNV + + K L E + Sbjct 2207 QLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL-----DECYR 2259 Query 2623 NVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-- 2680 +L+ STF A +H+ I +T S NN+ + K Sbjct 2260 ACNLNVSFSTFEMAVNN------------------AHRFGILITDRSFNNFWPSKVKPGS 2301 Query 2681 ENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPF 2740 ++ D+G C+ A+ +NA+V +++W +DF +LS +K + + + F Sbjct 2302 SGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNF 2361 Query 2741 KLTCATTRQVVNVV----TTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVM 2796 LT ++ T ++ K G + + QL ++ ++ I L + V Sbjct 2362 SLTFNAVGSDDDLPYERFTESVSPKSGSGFFDVITQLKQIVILVFVFIFICGLCSVYSVA 2421 Query 2797 SKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGS-YTNDKACPLIA 2855 ++ S+E Y I G+ + T +C N + F WF + G T K+CP++ Sbjct 2422 TQSYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAKYGFIPTFGKSCPIVV 2481 Query 2856 A-VITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACV 2914 V E +P +P + G L F V N+CY + D CV Sbjct 2482 GTVFDLENMRPIPDVPAYVSIV--GRSLVFAINAAFGVTNMCYDHTGNAVSKDSYFDTCV 2539 Query 2915 LAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVR 2974 CT G V YC ++EG+ Y L PD Y G++++ P +R Sbjct 2540 FNTACTTLTGLGGTIV-YCAKQGLVEGAKLYSDLMPDYYYEHASGNMVKLPAIIRGLGLR 2598 Query 2975 VVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPL 3034 V T + YCR G C S+AG C +V +N++ G CG + N+F Sbjct 2599 FVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGN---GYICGNSVLGFFKNVFKLF 2655 Query 3035 IQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCL 3094 + + S +++ I+A + + Y ++F++ FG+ + ++ + +++ + Sbjct 2656 NSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFV 2715 Query 3095 TPVYSFLPGVYSVIYLYLTFYLTNDVSF--LAHIQWMVMFTPLVPFWITIAYIICISTKH 3152 T + +IY + +++T +++ + +++ + + P+++ AYI+ Sbjct 2716 TQ-----NTFFMIIYAIVYYFITRKLAYPGILDAGFIIAYINMAPWYVITAYILVF---- 2766 Query 3153 FYWFFSNYLKRRV---VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYL 3208 Y + K +V +F G F FE AA+ TF+++ Y + + + + Y Sbjct 2767 LYDSLPSLFKLKVSTNLFEGDKFVGNFESAAMGTFVIDMRSYETIVNST--SIARIKSYA 2824 Query 3209 ALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRK 3268 +NKYKY++G+M YR A HL KAL D+S + +D+LY PP S+ S LQSG RK Sbjct 2825 NSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLYTPPTVSVNST-LQSGLRK 2883 Query 3269 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHN 3328 MA PSG VE C+V+V+ G LNGLWL D V CPRHVI + + NYE+ + HN Sbjct 2884 MAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRV-INYENEMSSVRLHN 2942 Query 3329 FLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3388 F V NV L V+ + L LKV+ NP TP++KF I+ G++F++LACY G P V Sbjct 2943 FSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSV 3002 Query 3389 YQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPF 3448 Y MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL G H G++ EG YG + Sbjct 3003 YGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGY 3062 Query 3449 VDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3508 D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + +L +N A ++ L+ Sbjct 3063 EDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSS- 3121 Query 3509 HVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTF 3568 D L+A+TG +V + S+ L G GRTIL L DEFTP +V+RQ GV Sbjct 3122 -TDAFSMLAAKTGQSVEKLLDSIVRL-NKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNL 3179 Query 3569 QSAVKRTIKGTHHWLLLTILTSLLVL-VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM 3627 Q+ ++ + ++T +T L ++ ++ F ++ +S + Sbjct 3180 QAGKVKSF----FYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVS 3235 Query 3628 FVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYAS 3687 +KHK F F+LPS+ V N+ + S+ + + ++ +T ++ ++ Sbjct 3236 GIKHKMLFFMSFVLPSVILVTAHNL-FWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVF 3294 Query 3688 AVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQA----------ISMWALI 3737 ++ + + R + + +L + V D+ ++M +I Sbjct 3295 CFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMI 3354 Query 3738 ISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLF 3797 +S+T+ VV +A IV + F ++CI +VY GY CY+G+ Sbjct 3355 VSLTTKDWMVVIASYRIAYYIVVCVM--PSAFVSDFGFMKCISIVYMACGYLFCCYYGIL 3412 Query 3798 CLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVAT 3857 +NR+ +T GVY + VS E +YM + L PKN+ DA L+ KL+GVGGK IK++T Sbjct 3413 YWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKIST 3472 Query 3858 VQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSV 3917 VQSK++++KCT+VVLL +L ++ VES+SK W CV LHN+I L D EK+++L++ Sbjct 3473 VQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPEIVLEKLLALIAF 3532 Query 3918 LLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVL 3977 LS D+++L E +N LQ++AS +++LPS+ A A+ E+A N S +L Sbjct 3533 FLSKHNTCDLSELIESYFENTTILQSVASAYAALPSWIALEKARADLEEAKKNDVSPQIL 3592 Query 3978 KKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4037 K+L K+ N+AKS+F+R+A++Q+KL+KMA+QA MYK+AR+ D+++K+ SAM ++LF ML Sbjct 3593 KQLTKAFNIAKSDFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGML 3652 Query 4038 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWE 4097 +KLD ++N II+ AR+G +PL+IIP +A +L+V+ P + YA A+W Sbjct 3653 KKLDMSSVNTIIDQARNGVLPLSIIPAASATRLVVITPSLEVFSKIRQENNVHYAGAIWT 3712 Query 4098 IQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAG 4157 I +V DA+ V L E++ N NL WPL +T R KLQNNE+ P L++ + A Sbjct 3713 IVEVKDANGSHVHLKEVTAANELNLTWPLSITCER---TTKLQNNEIMPGKLKERAVRAS 3769 Query 4158 TTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVT 4217 T + A + G F+ A ++ +LK+ ++ + I ELE P RF Sbjct 3770 ATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESN--NDIIPIELEAPLRFYV 3827 Query 4218 DTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAA 4277 D GP+VKYLYF+K LN L RG VLG + ATVRLQAG TE P+NS++L+ CAF+ D A Sbjct 3828 DGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSSLLTLCAFSPDPA 3887 Query 4278 KAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP 4337 KAY D + G QP+ NCVKML G G A+T EAN Q+S+GGAS C+YCRCH++HP Sbjct 3888 KAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVEANTQQDSYGGASVCIYCRCHVEHP 3947 Query 4338 NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQ 4397 G C KGK+VQIPT DP+ F ++N VC VCG W GC CD R M Q Sbjct 3948 AIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVVCGCWLNNGCMCD--RTSMQSFTVDQ 4004 Query 4398 SFLN 4401 S+LN Sbjct 4005 SYLN 4008 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 85/410 (21%), Positives = 154/410 (38%), Gaps = 48/410 (12%) Query 874 VVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEE 933 +V + + L P+ E G+ D + T G + S P+ Sbjct 1171 IVLERAVFKLTPLKESFN-YGVCGDCMQVNTCRFLSVEGSGVFVHDI-LSKQTPEAMFVV 1228 Query 934 GDCEEEEFEPSTQYEYGTEDDYQG---------KPLEFGATSAALQPEE---EQEEDWLD 981 + +TQ + DD + KPL+ ++ L + E Sbjct 1229 KPVMHAVYTGTTQNGHYMVDDIEHGYCVDGMGIKPLKKRCYTSTLFINANVMTRAEKPKQ 1288 Query 982 DDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIK 1041 + + V QQ E+N+++ + ++ P+ + + P + +++ + G L + N Sbjct 1289 EFKVEKVEQQPIVEENKSSIEKEEIQ-SPKNDDLILPFYKAGKLSFYQGALDVLINF--- 1344 Query 1042 NADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGG 1101 ++P V+VNAAN LKH GGVA A++ T + S DY+ N + G Sbjct 1345 ----------LEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGN 1394 Query 1102 SCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQH-EVLLAPLLSAGIFGADPIH 1160 + L+ VGP L + Y+ + +L PL+S GIF Sbjct 1395 AVFFENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIF------ 1448 Query 1161 SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI--AEIPKEEVKPFITES 1218 VR L K + D+ ++ F+ E+Q + IP + + Sbjct 1449 -------NVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHE 1501 Query 1219 KPSVEQRKQDDKKIKACV----EEVTTTLEETKFLTENLLLYIDINGNLH 1264 + SV K +++K V ++VT L + + ++ IDI+ H Sbjct 1502 RVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAH 1551 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 124/352 (35%), Gaps = 62/352 (18%) Query 1610 HNSHEGKTFYVLPNDDTL-RVEAFEYYHTTDP----SFLGRYMSALNHTKKWKYPQVNGL 1664 + E +T V T V+ E DP + +K +NG Sbjct 1024 SSQEEVETVEVADITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPSLPPFKTTNLNGK 1083 Query 1665 TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGE 1724 +K DNNC++ LQ + FN +A+ + + G+ +F L A G Sbjct 1084 IILKQGDNNCWINACCYQLQAFDF-FN----NEAWEKFKKGDVMDFVNLCYAATTLARGH 1138 Query 1725 LGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQ 1784 GD + + + + K VL C CG+++ L+ AV + L E F GV Sbjct 1139 SGDAEYLLELMLN--DYSTAKIVLAAKCG-CGEKEIVLE--RAVFKLTPLK-ESFNYGVC 1192 Query 1785 IPC----TCGKQATKY-------LVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQC 1833 C TC + + ++ +++P M P + + YTG Q Sbjct 1193 GDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAV----------YTGTTQN 1242 Query 1834 GHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEID 1893 GHY + E YC+DG + K + + + +F N T KP V E Sbjct 1243 GHY-MVDDIEHGYCVDG-MGIKPLKKRCYTSTLFINANVMTRAEKPKQEF--KVEKVEQQ 1298 Query 1894 PKLDN---------------------YYKKDNSYFTEQPIDLVPNQPYPNAS 1924 P ++ +YK F + +D++ N P+ Sbjct 1299 PIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLEPDVI 1350 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 66/367 (18%), Positives = 115/367 (31%), Gaps = 32/367 (9%) Query 1554 DNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQF-GPTYLDGADVTKIKPHNS 1612 D + + +I V T DN+N V TYG+Q G + DVT P Sbjct 1475 DQERQTIENFFSCSIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAF 1534 Query 1613 HEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADN 1672 G+ + ++ +Y D + K++ + K DN Sbjct 1535 DVGQKV-----IKAIDIDWQAHYGFRDAAAFSASSH---DAYKFEVVTHSNFIVHKQTDN 1586 Query 1673 NCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETM 1732 NC++ L LQ+++ ++ P ++ + + F ++ GE GD + Sbjct 1587 NCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDAELML 1646 Query 1733 SYLFQHANLDSCKRVLNVV-CKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGK 1791 L + D V + C C + G + G C G Sbjct 1647 HKLGDLMDNDCEIIVTHTTACDKC-AKVEKFVGPVVAAPLAI-------HGTDETCVHGV 1698 Query 1792 QATKYLVQQESPFVMMS--APPAQYELKHGTFTCASEYTGNYQCGHYKH-------ITSK 1842 + Q + + S P L+ + C Y+G+ + GHY + + Sbjct 1699 SVNVKVTQIKGTVAITSLIGPIIGEVLEATGYIC---YSGSNRNGHYTYYDNRNGLVVDA 1755 Query 1843 ETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKK 1902 E Y + LL ++ V K + K+ + KL Sbjct 1756 EKAYHFNRDLLQVTTAIASNF--VVKKPQAEERPKNCAFNKVAASPKIVQEQKLLAIESG 1813 Query 1903 DNSYFTE 1909 N TE Sbjct 1814 ANYALTE 1820 Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 50/251 (20%), Positives = 77/251 (31%), Gaps = 43/251 (17%) Query 174 MRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCRE 233 ++ G YVD CG DG P+ + D+ + Sbjct 102 LKIARTGRGAIYVDQYMCGADGKPV---------------IEGDFKDYF-GDEDIIEFEG 145 Query 234 HEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKL 293 E+ AW T R EK QT F I+ + N + P+ + N + + P V+K Sbjct 146 EEYHCAWTTVRDEKPLNQQTLFTIQEIQY----NLDIPHKL--PNCATRHVAPPVKKNSK 199 Query 294 DGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATC-EFCGTENLTKE 352 + +Y + S M C + T F+ AT CG+E+ Sbjct 200 IVLSEDYKKLY---------DIFGSPFMGNGDCLSKCFDTLHFIAATLRCPCGSESSGVG 250 Query 353 GATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFS 412 T C S +L + + T + G F CV Sbjct 251 DWT-----------GFKTACCGLSGKVKGVTLGDIKPGDAVVTSMSAGKGVKFFANCVLQ 299 Query 413 YVGCHNKCAYW 423 Y G + W Sbjct 300 YAGDVEGVSIW 310 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 50/302 (17%), Positives = 96/302 (32%), Gaps = 27/302 (9%) Query 748 PTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMM 807 V+ + +P+ +E V+ G + I G + +D Y Sbjct 811 DVPVVDNGTISTADWSEPILLEPAEYVKPKNNGNVIVIAGYTFYKDEDEHFYP--YGFGK 868 Query 808 VTNNTFTLKGGAPTKVTFGDD-TVIEVQGYKSVNITFELD-ERIDKVLNEKCSA---YTV 862 + + GG V+F ++ V E+ V + FE D E + VL +T Sbjct 869 IVQRMYNKMGGGDKTVSFSEEVDVQEIAPVTRVKLEFEFDNEIVTGVLERAIGTRYKFTG 928 Query 863 ELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYC 922 E E DA+ TL G++L+ + +++D G F + + Sbjct 929 TTWEEFEESISEELDAIFDTL-------ANQGVELEGY-----FIYDTCGGFDIKNPDGI 976 Query 923 SFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDD 982 D + + E + E+D + + +E + +EE E + D Sbjct 977 MISQYDINITADEKSEVSASSEEEEVESVEEDPENEIVEASEGAEGTSSQEEVETVEVAD 1036 Query 983 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKN 1042 + + V+VQ + + + F L + +K Sbjct 1037 ITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPS-------LPPFKT-TNLNGKIILKQ 1088 Query 1043 AD 1044 D Sbjct 1089 GD 1090 >sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1 Length=4117 Score = 2602 bits (6743), Expect = 0.0, Method: Composition-based stats. Identities = 772/2444 (32%), Positives = 1225/2444 (50%), Gaps = 169/2444 (7%) Query 2018 PVETSNSFDVLK---SEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE----------- 2063 P ++ N+ ++L D S+ VV P + VL+ Sbjct 1780 PSDSENALNMLSKYIVPAGSVTIERVTHDGCCCSKRVVTAPVVNASVLKLGVEDGLCPHG 1839 Query 2064 --CNVKTTEVVGDIILKPANNSLKITEEVGHTDL-MAAYVDNSSLTI------------- 2107 K V G I+ + + + ++DN + + Sbjct 1840 LNYIGKVVVVKGTTIVVNVGKPVVAPSHLFLKGVSYTTFLDNGNGVVGHYTVFDHGTGMV 1899 Query 2108 -----KKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVT--RC 2160 P +L+ + + A V P A L+ + + + Sbjct 1900 HDGDAFVPGDLNVSPVTNVVVSEQTAVVIKDPVKKAELDATKLLDTMNYASERFFSFGDF 1959 Query 2161 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 ++R Y ++L R + ++ A +P KS+ ++ +A + K Sbjct 1960 MSRNLITVFLYILSILGLCFRAFRKRDVKVLAGVPQRTGIILRKSM-RYNAKALGVFFKL 2018 Query 2221 PNFSKLINIIIWFLLLS-VCLG-SLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTI 2278 + WF +L LG +Y+ + + + +G P C GY NS+ Sbjct 2019 K--------LYWFKVLGKFSLGIYALYALLFMTIRFTPIGSP-VCDDVVAGYANSS-FDK 2068 Query 2279 ATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-DLTAFGLVAEWFLAYILFTRF 2337 YC S+ C VCL G L + + + + ++ F +A + ++ + Sbjct 2069 NEYC-NSVICKVCLYGYQELSDFSHTQVVWQHLRDPLIGNVMPFFYLAFLAIFGGVYVKA 2127 Query 2338 FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 2397 + + + + + I +Q+ P + F V Sbjct 2128 ITLYFIFQYLNSLGVFLG---------LQQSIWFLQLVPFDVFGDEIVVFFIVTRVLMFI 2178 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 HV GC+ ++C+ C K R RV TI G +SFYV+ANGG FCK HN+ C+NCD+ Sbjct 2179 KHVCLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDS 2238 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 2517 + G TFI+D +A ++ K + PT ++ ++D V NG +LY K + Sbjct 2239 YGPGCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDIT 2298 Query 2518 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV 2577 S + + L+ S+ + IVF+ + K+A VY+SQ++C+P+ L+D AL+ Sbjct 2299 DSKYTCKEALK----NCSIITDFIVFNNNG-SNVNQVKNACVYFSQMLCKPVKLVDSALL 2353 Query 2578 SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV-LSTFISA 2636 + + S + + A+V+ S++F + + + + D+V L TF +A Sbjct 2354 ASL--SVDFGASLHSAFVSVLSNSFGKDLSSCNDM-----QDCKSTLGFDDVPLDTFNAA 2406 Query 2637 ARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTP-RDLGACIDCS 2695 + +H+ D+ +T S NN+ +Y K E P D+ C+ Sbjct 2407 VAE------------------AHRYDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVG 2448 Query 2696 ARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVT 2755 A+ +N V +I ++W V+DF++LSE+ RK I K + F LT R + T Sbjct 2449 AKIVNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPT 2508 Query 2756 TKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGG 2815 IA K G + ++ K + LF+ A F+ ++ + ++ + S +K I+ G Sbjct 2509 VCIANKKGAGLPSFSKVKKFFWFLCLFIVAAFFALSFLDFSTQVSSDSD--YDFKYIESG 2566 Query 2816 VTRDIASTDTCFANKHADFDTWFSQRGGS-YTNDKACPLIAAVITREVGFVVPGLPGTIL 2874 + + +C N +FD W + G N+ +CP++ V + VPG+P + Sbjct 2567 QLKTFDNPLSCVHNVFINFDQWHDAKFGFTPVNNPSCPIVVGV--SDEARTVPGIPAGVY 2624 Query 2875 RTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCY 2934 G L F +C+ S + + AC+ + CT G V YCY Sbjct 2625 LA--GKTLVFAINTIFGTSGLCFDASGVAD-----KGACIFNSACTTLSGLGGTAV-YCY 2676 Query 2935 DTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSE 2993 ++EG+ Y L P + Y ++DG+ + P G +R + T YCR G C +S Sbjct 2677 KNGLVEGAKLYSELAPHSYYKMVDGNAVSLPEIISRGFGIRTIRTKAMTYCRVGQCVQSA 2736 Query 2994 AGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIV 3053 GVC +V N + S CG LL N+ + + + +S I+ I+ Sbjct 2737 EGVCFGADRFFVYNAE---SGSDFVCGTGLFTLLMNVISVFSKTVPVTVLSGQILFNCII 2793 Query 3054 AIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLT 3113 A V + + F +F+R FG+ S V L++ +T + + Y L Sbjct 2794 AFVAVAVCFLFTKFKRMFGDMSVGVFTVGACTLLNNVSYIVTQ-----NTLGMLGYATLY 2848 Query 3114 FYLTNDVS--FLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFN 3168 F T V ++ H+ +++ + + P+W+ + Y + + F N K +V +F Sbjct 2849 FLCTKGVRYMWIWHLGFLISYILIAPWWVLMVY----AFSAIFEFMPNLFKLKVSTQLFE 2904 Query 3169 GVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYR 3227 G F +FE AA TF+L+ Y +L + + + +Y + YNKYKY+SG+ YR Sbjct 2905 GDKFVGSFENAAAGTFVLDMHAYERLANSI--STEKLRQYASTYNKYKYYSGSASEADYR 2962 Query 3228 EAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGT 3287 A HLAKA+ D++++ +D LY PP S S LQ+G RKMA PSG VE C+V+V G Sbjct 2963 LACFAHLAKAMMDYASNHNDTLYTPPTVSYNST-LQAGLRKMAQPSGVVEKCIVRVCYGN 3021 Query 3288 TTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQN 3347 LNGLWL D+V CPRHVI +S +Y+ L HNF + +GNV L V+ +M+ Sbjct 3022 MALNGLWLGDIVMCPRHVIASSTTST-IDYDYALSVLRLHNFSISSGNVFLGVVSATMRG 3080 Query 3348 CVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGS 3407 +L++KV+ N TPKY + ++PG++F++LACY+G+ +GVY MR N+TI+GSF+NG+ Sbjct 3081 ALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGA 3140 Query 3408 CGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNV 3467 CGS G+NI+ V FCY+H +EL +G H G+DL+G YG + D+ T Q G + T NV Sbjct 3141 CGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENV 3200 Query 3468 LAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDM 3527 LA+LYAA+ING W+L+ ++ FN A+ + + D L+A+TG+ V + Sbjct 3201 LAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVG--NTDCFSILAAKTGVDVQRL 3258 Query 3528 CASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSA-VKRTIKGTHHWLLLT 3586 AS++ L +N G+ ILG L DEFT +VVRQ GV Q V R + + Sbjct 3259 LASIQSLHKN-FGGKQILGHTSLTDEFTTGEVVRQMYGVNLQGGYVSRACRN------VL 3311 Query 3587 ILTSLLVLVQS--TQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSL 3644 ++ S L S ++ FF++ P + +S+ M +KHK F +FL+P+L Sbjct 3312 LVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPAL 3371 Query 3645 ATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILM---TARTVY 3701 + N+ + + + SL GF + V V+ IL T R Sbjct 3372 IVTSCINLAFDVEVY--NYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFN 3429 Query 3702 DDGARRVWTLMNVLTLVYKVYYGNA-LDQAISMWALIISVTSNYSGVVTTVMFLARGIVF 3760 A V ++ +LT Y +Y + L A++++A SVT N V V + + V+ Sbjct 3430 T-PASSVTYVVALLTAAYNYFYASDILSCAMTLFA---SVTGN--WFVGAVCY--KVAVY 3481 Query 3761 MCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEF 3820 M + + P F ++ +M Y LGYF C++G+ NR+F++++GVYDY VS EF Sbjct 3482 MALRF-PTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEF 3540 Query 3821 RYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLR 3880 +YM + GL P ++D+ L+ KL+G+GG+ IK+++VQSK++D+KC++VVLL L + Sbjct 3541 KYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQSKLTDIKCSNVVLLGCLSSMN 3600 Query 3881 VESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRAT 3940 V ++S WA CV LHN I L D +A E +++LL+ LS A ++ L E ++ + Sbjct 3601 VSANSTEWAYCVDLHNKINLCNDPEKAQEMLLALLAFFLSKNSAFGLDDLLESYFNDNSM 3660 Query 3941 LQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRK 4000 LQ++AS + LPSY + A++ YE AV NG ++K+L+ ++NVAKSEFDR+A+ QRK Sbjct 3661 LQSVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRK 3720 Query 4001 LEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLN 4060 L++MA+QA QMYK+AR+ ++++KV SAM ++LF MLR+LD +++ I+N A+DG VPL+ Sbjct 3721 LDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLS 3780 Query 4061 IIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSP 4120 +IP +A KL +V D ++Y YA +W I + D D K+V + E++ N+ Sbjct 3781 VIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAE 3840 Query 4121 NLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRF 4180 +L+WPL++ R VKLQNNE+ P L+Q S A A YN G F Sbjct 3841 SLSWPLVLGCER---IVKLQNNEIIPGKLKQRSIKAEGDGIV---GEGKALYNNEGGRTF 3894 Query 4181 VLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRG 4240 + A +SD DL+ ++ G TI ELEPP +F+ D+P G ++KYLYF++ LN L RG Sbjct 3895 MYAFISDKPDLRVVKWEFDGGCNTI--ELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRG 3952 Query 4241 MVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCT 4300 VLG + ATVRLQAG TE NS++L+ CAFAVD AK Y D + SG +P+ NCVKML Sbjct 3953 AVLGYIGATVRLQAGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLAN 4012 Query 4301 HTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDP 4360 +G GQA+T EA+ +Q+S+GGAS CLYCR H++HP+ GFC LKGKYVQ+P DP Sbjct 4013 GSGNGQAVTNGVEASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DP 4071 Query 4361 VGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLNGFA 4404 + F L+N VC VCG W GC+CD+ ++QS D ++LN + Sbjct 4072 IRFVLENDVCKVCGCWLSNGCTCDR---SIMQSTD-MAYLNEYG 4111 Score = 266 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 242/1401 (17%), Positives = 450/1401 (32%), Gaps = 202/1401 (14%) Query 569 ILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEK----- 623 I + + ++ + DL T N+ + + Q L T Sbjct 645 ITCTLQFKAPSYVEDAVNFVDLCTKNIGTAGFHEFYITAHEQQDLQGFLTTCCTMSGFEC 704 Query 624 LKPVLDWLEEKFKE------GVEFLRDGWEIVKFIST-CACEIVGGQIVTCAKEIKESVQ 676 P + +E F+ + F + G +VT A++ K Sbjct 705 FMPTIPQCPAVLEEIDGGSIWRSFITGLNTMWDFCKRLKVSFGLDGIVVTVARKFKRLGA 764 Query 677 TFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAP 736 ++ N +L+ +++++ G K + G VKS + +P++A Sbjct 765 LLAEMYNTYLSTVVENLVLAGVSFK--YYATSVPKIVLGGCFHSVKSVFASVFQIPVQAG 822 Query 737 KEIIFL----EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLE 792 E + +P + T V L+ + P + + I Sbjct 823 IEKFKVFLNCVHPVVPRVIETSFVELEETTF-----------KPPALNGGIAIVDGFAFY 871 Query 793 IKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVNITFELD-ERIDK 851 T Y V F KGG K + + +V + V++ FE + E I Sbjct 872 YDGTLYYPT--DGNSVVPICFKKKGGGDVKFS-DEVSVKTIDPVYKVSLEFEFESETIMA 928 Query 852 VLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDES 911 VLN+ V +V V + + ++ + D + YY++DE Sbjct 929 VLNKA-----VGNRIKVTGGWDDVVEYINVAIEVLK----------DHVEVPKYYIYDEE 973 Query 912 GEFKLASHMYCSFYPPDED-----------------EEEGDCEEEEFEPSTQYEYGTEDD 954 G + S +P ++D + EGD + +E Sbjct 974 GGTDPNLPVMVSQWPLNDDTISQDLLDVEVVTDAPIDSEGDEVDSSAPEKVADVANSEPG 1033 Query 955 YQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSED--------------NQTT 1000 G P+ + + EE D+ TV + + D N Sbjct 1034 DDGLPVAPETNVES-EVEEVAATLSFIKDTPSTVTKDPFAFDFVSYGGLKVLRQSHNNCW 1092 Query 1001 TIQTIVEV-------QPQLEM----ELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEA 1049 T+V++ P +E+ + P+V+ + + L +V + ++ Sbjct 1093 VTSTLVQLQLLGIVDDPAMELFSAGRVGPMVRKCYESQKAI-LGSLGDVSACLESLTKDL 1151 Query 1050 KKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD-DYIATNGPLKVGGSCVLSGH 1108 +K T V V G T + T P G Sbjct 1152 HTLKITCSV------------VCG---CGTGERIYEGCAFRMTPTLEPFPYGACA----- 1191 Query 1109 NLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDT 1168 A+ +H V G + + +++ PL +A G D H + D Sbjct 1192 QCAQVLMHTFKSIVGTG----IFCRDTTALSLDSLVVKPLCAAAFIGKDSGHYVTNFYDA 1247 Query 1169 VRTNVYLAVFDKNLYDKLVSSFL-EMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQ 1227 + + YD L + + ++ + + + + VKPF + + Sbjct 1248 AMA-IDGYGRHQIKYDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSYKNVD-FYQGD 1305 Query 1228 DDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIV 1287 +K + V E + ID+ + ++ ++K P V Sbjct 1306 FSDLVKLPCDFVVNAANEKLSHGGGIAKAIDV------YTKGMLQKCSNDYIKAHGPIKV 1359 Query 1288 G-DVVQEG---VLTAVVIPTKKAGGTTEMLAKALRKVPTDN--YITTYPGQGLNGYTVEE 1341 G V+ E + VV P +K E+L KA + V ++ +T G+ +EE Sbjct 1360 GRGVMLEALGLKVFNVVGP-RKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEE 1418 Query 1342 AKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVST 1401 + + C + ++++E + L + + E PV + + Sbjct 1419 SLSAFLACVGDRHCKCFCYGDKEREAIIKYMDGLVDAI-FKEALVDTTPVQEDVQ----- 1472 Query 1402 IQRKYKGIKIQEGVVD-YGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLE 1460 Q K + GA ++ + + SL L + L+ Sbjct 1473 -QVSQKPVLPNFEPFRIEGAHAFYECNPEGLMSLGADKLVL----------FTNSNLDFC 1521 Query 1461 EAARYMRSLKVPAT-----VSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWS 1515 + + + A V S V A N +T + + G D + Sbjct 1522 SVGKCLNDVTSGALLEAINVFKKSNKTVPAGNC-VTLDCANMISITMVVLPFDG---DAN 1577 Query 1516 YSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLD------GEVITFDNLKTLLSLREVRTIK 1569 Y + ++ K K V + T + G V T D+++ + +++ Sbjct 1578 YDKNYARAVVKVSKLKGKLVLAVDDATLYSKLSHLSVLGFVSTPDDVERFYAN---KSVV 1634 Query 1570 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 1629 + T D ++ V+ + TYGQQ GP ++ VT KP + V+PN + Sbjct 1635 IKVTEDTRSVKAVKVESTATYGQQIGPCLVNDTVVTDNKPVVADV--VAKVVPNAN---- 1688 Query 1630 EAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATALLTLQQIEL 1688 ++ ++ D + L+HT + VNG IK DNNC++ L LQ Sbjct 1689 --WDSHYGFDKAGE---FHMLDHTGFTFPSEVVNGRRVIKTTDNNCWVNVTCLQLQFARF 1743 Query 1689 KFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH---ANLDSCK 1745 +F LQ + G+ A F + G+ D ++ L ++ A + + Sbjct 1744 RFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQPSDSENALNMLSKYIVPAGSVTIE 1803 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQ---IPCTCGKQATKYLVQQES 1802 RV + C C ++ T V A + K GV+ P +V+ + Sbjct 1804 RVTHDGC-CCSKRVVTAPVVNASV---------LKLGVEDGLCPHGLNYIGKVVVVKGTT 1853 Query 1803 PFVMMSAP---PAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEY 1859 V + P P+ LK ++T + GN GHY + T DG Sbjct 1854 IVVNVGKPVVAPSHLFLKGVSYTTFLD-NGNGVVGHYT-VFDHGTGMVHDGDAFVPGDLN 1911 Query 1860 KGPITDVFYKENSYTTTIKPV 1880 P+T+V E + PV Sbjct 1912 VSPVTNVVVSEQTAVVIKDPV 1932 Score = 76.7 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 77/483 (16%), Positives = 138/483 (29%), Gaps = 69/483 (14%) Query 172 ELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCC 231 EL GG VD CG DG P+ + + T F D++ G Sbjct 102 ELTFGRRGGNIVP-VDQYMCGADGKPV-------LQESEWEYTDF----FADSEDGQLNI 149 Query 232 REHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTI-QPRVEK 290 + AW ERS+ SY Q IK T+ F + +K P+++K Sbjct 150 AGITYVKAWIVERSDVSYASQNLTSIKSITYCSTYE-----HTFLDGTAMKVARTPKIKK 204 Query 291 KK-----LDGFMGRIRSVYPVASPNECN----QMCLSTLMKCDHCGETSWQTGDFVKATC 341 L I S + + + + L +KC CG W GD+ Sbjct 205 NVVLSEPLATIYREIGSPFVDNGSDARSIIRRPVFLHAFVKCK-CGSYHWTVGDWTSYVS 263 Query 342 EFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGG 401 CG + +C +P + VV T G Sbjct 264 TCCGFK-CKPVLVASCSAMPGSVVV----------------------------TRAGAGT 294 Query 402 RTIAFGGCVFSYVGCHNKCAYW-VPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVN 460 + +V + A+W + + + +G E E + L + Sbjct 295 GVKYYNNMFLRHVADIDGLAFWRILKVQSKDDLACSGKFLEHHEEGFTDPCYFLNDSSLA 354 Query 461 INIVGDFK----LNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKA 516 + D +E I+A SA V+ V D + G+ + Sbjct 355 TKLKFDILSGKFSDEVKQAIIAGHVVVGSALVDIVD--DALGQPWFIRKLGD--LASAPW 410 Query 517 KKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQY 576 ++ + + + F + SI + E + L A ++ ++++ Sbjct 411 EQLKAVVRGLGLLSDEVVLFGKRLSCATLSIVNGVFEFLADVPEKLAAAVTVFVNFLNEF 470 Query 577 SLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLT--NIFGTVYEKLKPVLDWLEEK 634 D + + +V+L G + ++ K Sbjct 471 FESACDCLKVGGKTFNKVGSYV-LFDNALVKLVKAKARGPRQAGICEVRYTSLVVGSTTK 529 Query 635 FKE 637 Sbjct 530 VVS 532 Score = 63.6 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 87/259 (34%), Gaps = 27/259 (10%) Query 1655 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 1714 + + GL ++ + NNC++ + L+ LQ + + +P A AG Sbjct 1072 AFDFVSYGGLKVLRQSHNNCWVTSTLVQLQLLGIVDDP-----AMELFSAGRVGPMVRKC 1126 Query 1715 LAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 +G LGDV + L + +L + K +VVC CG + +G + T Sbjct 1127 YESQKAILGSLGDVSACLESLTK--DLHTLKITCSVVCG-CGTGERIYEG---CAFRMTP 1180 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFT--CASEYTGNYQ 1832 + E F C + + L CA+ + G Sbjct 1181 TLEPF--PYGACAQCAQVLMHTFKSIVGTGIFCRDT-TALSLDSLVVKPLCAAAFIGK-D 1236 Query 1833 CGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEI 1892 GHY + IDG + + + K+ ++T + P D VV + Sbjct 1237 SGHYVTNF-YDAAMAIDG--YGRHQIKYDTLNTICVKDVNWTAPLVPAV---DSVVEPVV 1290 Query 1893 DPKLDNYYKKDNSYFTEQP 1911 P +Y N F + Sbjct 1291 KP----FYSYKNVDFYQGD 1305 >sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 2599 bits (6737), Expect = 0.0, Method: Composition-based stats. Identities = 772/2441 (32%), Positives = 1224/2441 (50%), Gaps = 169/2441 (7%) Query 2018 PVETSNSFDVLK---SEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLE----------- 2063 P ++ N+ ++L D S+ VV P + VL+ Sbjct 1780 PSDSENALNMLSKYIVPAGSVTIERVTHDGCCCSKRVVTAPVVNASVLKLGVEDGLCPHG 1839 Query 2064 --CNVKTTEVVGDIILKPANNSLKITEEVGHTDL-MAAYVDNSSLTI------------- 2107 K V G I+ + + + ++DN + + Sbjct 1840 LNYIGKVVVVKGTTIVVNVGKPVVAPSHLFLKGVSYTTFLDNGNGVVGHYTVFDHGTGMV 1899 Query 2108 -----KKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVT--RC 2160 P +L+ + + A V P A L+ + + + Sbjct 1900 HDGDAFVPGDLNVSPVTNVVVSEQTAVVIKDPVKKAELDATKLLDTMNYASERFFSFGDF 1959 Query 2161 LNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKS 2220 ++R Y ++L R + ++ A +P KS+ ++ +A + K Sbjct 1960 MSRNLITVFLYILSILGLCFRAFRKRDVKVLAGVPQRTGIILRKSM-RYNAKALGVFFKL 2018 Query 2221 PNFSKLINIIIWFLLLS-VCLG-SLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTI 2278 + WF +L LG +Y+ + + + +G P C GY NS+ Sbjct 2019 K--------LYWFKVLGKFSLGIYALYALLFMTIRFTPIGSP-VCDDVVAGYANSS-FDK 2068 Query 2279 ATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKW-DLTAFGLVAEWFLAYILFTRF 2337 YC S+ C VCL G L + + + + ++ F +A + ++ + Sbjct 2069 NEYC-NSVICKVCLYGYQELSDFSHTQVVWQHLRDPLIGNVMPFFYLAFLAIFGGVYVKA 2127 Query 2338 FYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSY 2397 + + + + + I +Q+ P + F V Sbjct 2128 ITLYFIFQYLNSLGVFLG---------LQQSIWFLQLVPFDVFGDEIVVFFIVTRVLMFI 2178 Query 2398 VHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 HV GC+ ++C+ C K R RV TI G +SFYV+ANGG FCK HN+ C+NCD+ Sbjct 2179 KHVCLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDS 2238 Query 2458 FCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHS 2517 + G TFI+D +A ++ K + PT ++ ++D V NG +LY K + Sbjct 2239 YGPGCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDIT 2298 Query 2518 LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALV 2577 S + + L+ S+ + IVF+ + K+A VY+SQ++C+P+ L+D AL+ Sbjct 2299 DSKYTCKEALK----NCSIITDFIVFNNNG-SNVNQVKNACVYFSQMLCKPVKLVDSALL 2353 Query 2578 SDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNV-LSTFISA 2636 + + S + + A+V+ S++F + + + + D+V L TF +A Sbjct 2354 ASL--SVDFGASLHSAFVSVLSNSFGKDLSSCNDM-----QDCKSTLGFDDVPLDTFNAA 2406 Query 2637 ARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTP-RDLGACIDCS 2695 + +H+ D+ +T S NN+ +Y K E P D+ C+ Sbjct 2407 VAE------------------AHRYDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVG 2448 Query 2696 ARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVT 2755 A+ +N V +I ++W V+DF++LSE+ RK I K + F LT R + T Sbjct 2449 AKIVNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPT 2508 Query 2756 TKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGG 2815 IA K G + ++ K + LF+ A F+ ++ + ++ + S +K I+ G Sbjct 2509 VCIANKKGAGLPSFSKVKKFFWFLCLFIVAAFFALSFLDFSTQVSSDSD--YDFKYIESG 2566 Query 2816 VTRDIASTDTCFANKHADFDTWFSQRGGS-YTNDKACPLIAAVITREVGFVVPGLPGTIL 2874 + + +C N +FD W + G N+ +CP++ V + VPG+P + Sbjct 2567 QLKTFDNPLSCVHNVFINFDQWHDAKFGFTPVNNPSCPIVVGV--SDEARTVPGIPAGVY 2624 Query 2875 RTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCY 2934 G L F +C+ S + + AC+ + CT G V YCY Sbjct 2625 LA--GKTLVFAINTIFGTSGLCFDASGVAD-----KGACIFNSACTTLSGLGGTAV-YCY 2676 Query 2935 DTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSE 2993 ++EG+ Y L P + Y ++DG+ + P G +R + T YCR G C +S Sbjct 2677 KNGLVEGAKLYSELAPHSYYKMVDGNAVSLPEIISRGFGIRTIRTKAMTYCRVGQCVQSA 2736 Query 2994 AGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIV 3053 GVC +V N + S CG LL N+ + + + +S I+ I+ Sbjct 2737 EGVCFGADRFFVYNAE---SGSDFVCGTGLFTLLMNVISVFSKTVPVTVLSGQILFNCII 2793 Query 3054 AIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLT 3113 A V + + F +F+R FG+ S V L++ +T + + Y L Sbjct 2794 AFVAVAVCFLFTKFKRMFGDMSVGVFTVGACTLLNNVSYIVTQ-----NTLGMLGYATLY 2848 Query 3114 FYLTNDVS--FLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFN 3168 F T V ++ H+ +++ + + P+W+ + Y + + F N K +V +F Sbjct 2849 FLCTKGVRYMWIWHLGFLISYILIAPWWVLMVY----AFSAIFEFMPNLFKLKVSTQLFE 2904 Query 3169 GVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYR 3227 G F +FE AA TF+L+ Y +L + + + +Y + YNKYKY+SG+ YR Sbjct 2905 GDKFVGSFENAAAGTFVLDMHAYERLANSI--STEKLRQYASTYNKYKYYSGSASEADYR 2962 Query 3228 EAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGT 3287 A HLAKA+ D++++ +D LY PP S S LQ+G RKMA PSG VE C+V+V G Sbjct 2963 LACFAHLAKAMMDYASNHNDTLYTPPTVSYNST-LQAGLRKMAQPSGVVEKCIVRVCYGN 3021 Query 3288 TTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQN 3347 LNGLWL D+V CPRHVI +S +Y+ L HNF + +GNV L V+ +M+ Sbjct 3022 MALNGLWLGDIVMCPRHVIASSTTST-IDYDYALSVLRLHNFSISSGNVFLGVVSATMRG 3080 Query 3348 CVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGS 3407 +L++KV+ N TPKY + ++PG++F++LACY+G+ +GVY MR N+TI+GSF+NG+ Sbjct 3081 ALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGA 3140 Query 3408 CGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNV 3467 CGS G+NI+ V FCY+H +EL +G H G+DL+G YG + D+ T Q G + T NV Sbjct 3141 CGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENV 3200 Query 3468 LAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDM 3527 LA+LYAA+ING W+L+ ++ FN A+ + + D L+A+TG+ V + Sbjct 3201 LAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVG--NTDCFSILAAKTGVDVQRL 3258 Query 3528 CASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSA-VKRTIKGTHHWLLLT 3586 AS++ L +N G+ ILG L DEFT +VVRQ GV Q V R + + Sbjct 3259 LASIQSLHKN-FGGKQILGHTSLTDEFTTGEVVRQMYGVNLQGGYVSRACRN------VL 3311 Query 3587 ILTSLLVLVQS--TQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSL 3644 ++ S L S ++ FF++ P + +S+ M +KHK F +FL+P+L Sbjct 3312 LVGSFLTFFWSELVSYTKFFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPAL 3371 Query 3645 ATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILM---TARTVY 3701 + N+ + + + SL GF + V V+ IL T R Sbjct 3372 IVTSCINLAFDVEVY--NYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFN 3429 Query 3702 DDGARRVWTLMNVLTLVYKVYYGNA-LDQAISMWALIISVTSNYSGVVTTVMFLARGIVF 3760 A V ++ +LT Y +Y + L A++++A SVT N V V + + V+ Sbjct 3430 T-PASSVTYVVALLTAAYNYFYASDILSCAMTLFA---SVTGN--WFVGAVCY--KVAVY 3481 Query 3761 MCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEF 3820 M + + P F ++ +M Y LGYF C++G+ NR+F++++GVYDY VS EF Sbjct 3482 MALRF-PTFVAIFGDIKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEF 3540 Query 3821 RYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLR 3880 +YM + GL P ++D+ L+ KL+G+GG+ IK+++VQSK++D+KC++VVLL L + Sbjct 3541 KYMVANGLRAPTGTLDSLLLSAKLIGIGGERNIKISSVQSKLTDIKCSNVVLLGCLSSMN 3600 Query 3881 VESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRAT 3940 V ++S WA CV LHN I L D +A E +++LL+ LS A ++ L E ++ + Sbjct 3601 VSANSTEWAYCVDLHNKINLCNDPEKAQEMLLALLAFFLSKNSAFGLDDLLESYFNDNSM 3660 Query 3941 LQAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRK 4000 LQ++AS + LPSY + A++ YE AV NG ++K+L+ ++NVAKSEFDR+A+ QRK Sbjct 3661 LQSVASTYVGLPSYVIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRK 3720 Query 4001 LEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLN 4060 L++MA+QA QMYK+AR+ ++++KV SAM ++LF MLR+LD +++ I+N A+DG VPL+ Sbjct 3721 LDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLS 3780 Query 4061 IIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSP 4120 +IP +A KL +V D ++Y YA +W I + D D K+V + E++ N+ Sbjct 3781 VIPAVSATKLNIVTSDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAE 3840 Query 4121 NLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRF 4180 +L+WPL++ R VKLQNNE+ P L+Q S A A YN G F Sbjct 3841 SLSWPLVLGCER---IVKLQNNEIIPGKLKQRSIKAEGDGIV---GEGKALYNNEGGRTF 3894 Query 4181 VLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRG 4240 + A +SD DL+ ++ G TI ELEPP +F+ D+P G ++KYLYF++ LN L RG Sbjct 3895 MYAFISDKPDLRVVKWEFDGGCNTI--ELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRG 3952 Query 4241 MVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCT 4300 VLG + ATVRLQAG TE NS++L+ CAFAVD AK Y D + SG +P+ NCVKML Sbjct 3953 AVLGYIGATVRLQAGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLAN 4012 Query 4301 HTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDP 4360 +G GQA+T EA+ +Q+S+GGAS CLYCR H++HP+ GFC LKGKYVQ+P DP Sbjct 4013 GSGNGQAVTNGVEASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DP 4071 Query 4361 VGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQSADAQSFLN 4401 + F L+N VC VCG W GC+CD+ ++QS D ++LN Sbjct 4072 IRFVLENDVCKVCGCWLSNGCTCDR---SIMQSTD-MAYLN 4108 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 242/1401 (17%), Positives = 450/1401 (32%), Gaps = 202/1401 (14%) Query 569 ILDGISQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLTNIFGTVYEK----- 623 I + + ++ + DL T N+ + + Q L T Sbjct 645 ITCTLQFKAPSYVEDAVNFVDLCTKNIGTAGFHEFYITAHEQQDLQGFLTTCCTMSGFEC 704 Query 624 LKPVLDWLEEKFKE------GVEFLRDGWEIVKFIST-CACEIVGGQIVTCAKEIKESVQ 676 P + +E F+ + F + G +VT A++ K Sbjct 705 FMPTIPQCPAVLEEIDGGSIWRSFITGLNTMWDFCKRLKVSFGLDGIVVTVARKFKRLGA 764 Query 677 TFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAP 736 ++ N +L+ +++++ G K + G VKS + +P++A Sbjct 765 LLAEMYNTYLSTVVENLVLAGVSFK--YYATSVPKIVLGGCFHSVKSVFASVFQIPVQAG 822 Query 737 KEIIFL----EGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLE 792 E + +P + T V L+ + P + + I Sbjct 823 IEKFKVFLNCVHPVVPRVIETSFVELEETTF-----------KPPALNGGIAIVDGFAFY 871 Query 793 IKDTEKYCALAPNMMVTNNTFTLKGGAPTKVTFGDDTVIEVQGYKSVNITFELD-ERIDK 851 T Y V F KGG K + + +V + V++ FE + E I Sbjct 872 YDGTLYYPT--DGNSVVPICFKKKGGGDVKFS-DEVSVKTIDPVYKVSLEFEFESETIMA 928 Query 852 VLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDES 911 VLN+ V +V V + + ++ + D + YY++DE Sbjct 929 VLNKA-----VGNRIKVTGGWDDVVEYINVAIEVLK----------DHVEVPKYYIYDEE 973 Query 912 GEFKLASHMYCSFYPPDED-----------------EEEGDCEEEEFEPSTQYEYGTEDD 954 G + S +P ++D + EGD + +E Sbjct 974 GGTDPNLPVMVSQWPLNDDTISQDLLDVEVVTDAPIDSEGDEVDSSAPEKVADVANSEPG 1033 Query 955 YQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSED--------------NQTT 1000 G P+ + + EE D+ TV + + D N Sbjct 1034 DDGLPVAPETNVES-EVEEVAATLSFIKDTPSTVTKDPFAFDFVSYGGLKVLRQSHNNCW 1092 Query 1001 TIQTIVEV-------QPQLEM----ELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEA 1049 T+V++ P +E+ + P+V+ + + L +V + ++ Sbjct 1093 VTSTLVQLQLLGIVDDPAMELFSAGRVGPMVRKCYESQKAI-LGSLGDVSACLESLTKDL 1151 Query 1050 KKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD-DYIATNGPLKVGGSCVLSGH 1108 +K T V V G T + T P G Sbjct 1152 HTLKITCSV------------VCG---CGTGERIYEGCAFRMTPTLEPFPYGACA----- 1191 Query 1109 NLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDT 1168 A+ +H V G + + +++ PL +A G D H + D Sbjct 1192 QCAQVLMHTFKSIVGTG----IFCRDTTALSLDSLVVKPLCAAAFIGKDSGHYVTNFYDA 1247 Query 1169 VRTNVYLAVFDKNLYDKLVSSFL-EMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQ 1227 + + YD L + + ++ + + + + VKPF + + Sbjct 1248 AMA-IDGYGRHQIKYDTLNTICVKDVNWTAPLVPAVDSVVEPVVKPFYSYKNVD-FYQGD 1305 Query 1228 DDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIV 1287 +K + V E + ID+ + ++ ++K P V Sbjct 1306 FSDLVKLPCDFVVNAANEKLSHGGGIAKAIDV------YTKGMLQKCSNDYIKAHGPIKV 1359 Query 1288 G-DVVQEG---VLTAVVIPTKKAGGTTEMLAKALRKVPTDN--YITTYPGQGLNGYTVEE 1341 G V+ E + VV P +K E+L KA + V ++ +T G+ +EE Sbjct 1360 GRGVMLEALGLKVFNVVGP-RKGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEE 1418 Query 1342 AKTVLKKCKSAFYILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVST 1401 + + C + ++++E + L + + E PV + + Sbjct 1419 SLSAFLACVGDRHCKCFCYGDKEREAIIKYMDGLVDAI-FKEALVDTTPVQEDVQ----- 1472 Query 1402 IQRKYKGIKIQEGVVD-YGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLE 1460 Q K + GA ++ + + SL L + L+ Sbjct 1473 -QVSQKPVLPNFEPFRIEGAHAFYECNPEGLMSLGADKLVL----------FTNSNLDFC 1521 Query 1461 EAARYMRSLKVPAT-----VSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWS 1515 + + + A V S V A N +T + + G D + Sbjct 1522 SVGKCLNDVTSGALLEAINVFKKSNKTVPAGNC-VTLDCANMISITMVVLPFDG---DAN 1577 Query 1516 YSGQSTQLGIEFLKRGDKSVYYTSNPTTFHLD------GEVITFDNLKTLLSLREVRTIK 1569 Y + ++ K K V + T + G V T D+++ + +++ Sbjct 1578 YDKNYARAVVKVSKLKGKLVLAVDDATLYSKLSHLSVLGFVSTPDDVERFYAN---KSVV 1634 Query 1570 VFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRV 1629 + T D ++ V+ + TYGQQ GP ++ VT KP + V+PN + Sbjct 1635 IKVTEDTRSVKAVKVESTATYGQQIGPCLVNDTVVTDNKPVVADV--VAKVVPNAN---- 1688 Query 1630 EAFEYYHTTDPSFLGRYMSALNHTK-KWKYPQVNGLTSIKWADNNCYLATALLTLQQIEL 1688 ++ ++ D + L+HT + VNG IK DNNC++ L LQ Sbjct 1689 --WDSHYGFDKAGE---FHMLDHTGFTFPSEVVNGRRVIKTTDNNCWVNVTCLQLQFARF 1743 Query 1689 KFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQH---ANLDSCK 1745 +F LQ + G+ A F + G+ D ++ L ++ A + + Sbjct 1744 RFKSAGLQAMWESYCTGDVAMFVHWLYWLTGVDKGQPSDSENALNMLSKYIVPAGSVTIE 1803 Query 1746 RVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQ---IPCTCGKQATKYLVQQES 1802 RV + C C ++ T V A + K GV+ P +V+ + Sbjct 1804 RVTHDGC-CCSKRVVTAPVVNASV---------LKLGVEDGLCPHGLNYIGKVVVVKGTT 1853 Query 1803 PFVMMSAP---PAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEY 1859 V + P P+ LK ++T + GN GHY + T DG Sbjct 1854 IVVNVGKPVVAPSHLFLKGVSYTTFLD-NGNGVVGHYT-VFDHGTGMVHDGDAFVPGDLN 1911 Query 1860 KGPITDVFYKENSYTTTIKPV 1880 P+T+V E + PV Sbjct 1912 VSPVTNVVVSEQTAVVIKDPV 1932 Score = 77.1 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 77/483 (16%), Positives = 138/483 (29%), Gaps = 69/483 (14%) Query 172 ELMRELNGGAYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCC 231 EL GG VD CG DG P+ + + T F D++ G Sbjct 102 ELTFGRRGGNIVP-VDQYMCGADGKPV-------LQESEWEYTDF----FADSEDGQLNI 149 Query 232 REHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTI-QPRVEK 290 + AW ERS+ SY Q IK T+ F + +K P+++K Sbjct 150 AGITYVKAWIVERSDVSYASQNLTSIKSITYCSTYE-----HTFLDGTAMKVARTPKIKK 204 Query 291 KK-----LDGFMGRIRSVYPVASPNECN----QMCLSTLMKCDHCGETSWQTGDFVKATC 341 L I S + + + + L +KC CG W GD+ Sbjct 205 NVVLSEPLATIYREIGSPFVDNGSDARSIIRRPVFLHAFVKCK-CGSYHWTVGDWTSYVS 263 Query 342 EFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGG 401 CG + +C +P + VV T G Sbjct 264 TCCGFK-CKPVLVASCSAMPGSVVV----------------------------TRAGAGT 294 Query 402 RTIAFGGCVFSYVGCHNKCAYW-VPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVN 460 + +V + A+W + + + +G E E + L + Sbjct 295 GVKYYNNMFLRHVADIDGLAFWRILKVQSKDDLACSGKFLEHHEEGFTDPCYFLNDSSLA 354 Query 461 INIVGDFK----LNEEIAIILASFSASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKA 516 + D +E I+A SA V+ V D + G+ + Sbjct 355 TKLKFDILSGKFSDEVKQAIIAGHVVVGSALVDIVD--DALGQPWFIRKLGD--LASAPW 410 Query 517 KKGAWNIGEQKSILSPLYAFASEAARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQY 576 ++ + + + F + SI + E + L A ++ ++++ Sbjct 411 EQLKAVVRGLGLLSDEVVLFGKRLSCATLSIVNGVFEFLADVPEKLAAAVTVFVNFLNEF 470 Query 577 SLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSQWLT--NIFGTVYEKLKPVLDWLEEK 634 D + + +V+L G + ++ K Sbjct 471 FESACDCLKVGGKTFNKVGSYV-LFDNALVKLVKAKARGPRQAGICEVRYTSLVVGSTTK 529 Query 635 FKE 637 Sbjct 530 VVS 532 Score = 63.6 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 87/259 (34%), Gaps = 27/259 (10%) Query 1655 KWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALI 1714 + + GL ++ + NNC++ + L+ LQ + + +P A AG Sbjct 1072 AFDFVSYGGLKVLRQSHNNCWVTSTLVQLQLLGIVDDP-----AMELFSAGRVGPMVRKC 1126 Query 1715 LAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTL 1774 +G LGDV + L + +L + K +VVC CG + +G + T Sbjct 1127 YESQKAILGSLGDVSACLESLTK--DLHTLKITCSVVCG-CGTGERIYEG---CAFRMTP 1180 Query 1775 SYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFT--CASEYTGNYQ 1832 + E F C + + L CA+ + G Sbjct 1181 TLEPF--PYGACAQCAQVLMHTFKSIVGTGIFCRDT-TALSLDSLVVKPLCAAAFIGK-D 1236 Query 1833 CGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEI 1892 GHY + IDG + + + K+ ++T + P D VV + Sbjct 1237 SGHYVTNF-YDAAMAIDG--YGRHQIKYDTLNTICVKDVNWTAPLVPAV---DSVVEPVV 1290 Query 1893 DPKLDNYYKKDNSYFTEQP 1911 P +Y N F + Sbjct 1291 KP----FYSYKNVDFYQGD 1305 >sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 2589 bits (6710), Expect = 0.0, Method: Composition-based stats. Identities = 754/2304 (33%), Positives = 1181/2304 (51%), Gaps = 121/2304 (5%) Query 2111 NELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMP 2170 ++LS + + G N TI + ++K+ + N + Sbjct 1856 SDLSTLAVTAIVVVGGCVTSN---VPTIVSEKISVMDKLDTGAQKFFQ--FGDFVMNNIV 1910 Query 2171 YFFTLLLQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKL 2226 F T LL + + R++ + ++ A P +S K+ + ++ +K Sbjct 1911 LFLTWLLSMFSLLRTSIMKHDIKVIAKAPKRTGVILTRS-FKYNIRSALFVIKQK----- 1964 Query 2227 INIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSI 2286 +I+ L L ++ + C GY ST YC S+ Sbjct 1965 WCVIV--TLFKFLLLLYAIYALVFMIVQFSPFNSLLCGDIVSGYEKST-FNKDIYCGNSM 2021 Query 2287 PCSVCLSGLDSLDTYPSLETIQITISSF-KWDLTAFGLVAEWFLAYILFTRFFYVLGLAA 2345 C +CL + + I L F ++ + ++ RF + +A Sbjct 2022 VCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPFVILVILLIFGNMYLRFGLLYFVAQ 2081 Query 2346 IMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCN 2405 + F S+ H W + P + ++ + H++ GCN Sbjct 2082 FISTFGSFLGFH--QKQWFLHF-------VPFDVLCNEFLATFIVCKIVLFVRHIIVGCN 2132 Query 2406 SSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFI 2465 ++ C+ C K R RV TI+NG+ +SFYV ANGG FC HN+ CVNCD+F G+TFI Sbjct 2133 NADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKHNFFCVNCDSFGPGNTFI 2192 Query 2466 SDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLD 2525 + ++AR+L K + PT + I+D V NG LY + + S + + Sbjct 2193 NGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLYSGDTFWRYDFDITESKYSCKE 2252 Query 2526 NLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAE 2585 L+ N N IV++ S + K+A VY+SQL+C+PI L++ L+S + S + Sbjct 2253 VLKNCNV----LENFIVYNN-SGSNITQIKNACVYFSQLLCEPIKLVNSELLSTL--SVD 2305 Query 2586 VAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSD 2645 + AYV+ ++F ++L ++ AE + ++ Sbjct 2306 FNGVLHKAYVDVLCNSF---FKELTANMSMAECKATLGLT-------------------- 2342 Query 2646 VETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPRDLGACIDCSARHINAQVA 2704 V D V + +H+ D+ ++ S NN+ ++Y K + ++ D+ C+ ++ +N V Sbjct 2343 VSDDDFVSAVANAHRYDVLLSDLSFNNFFISYAKPEDKLSVYDIACCMRAGSKVVNHNVL 2402 Query 2705 KSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGK 2764 +I ++W VKDF +LS++ +K + K L F LT + + V T I K G Sbjct 2403 IKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGLTFLLTFNDNQAITQVPATSIVAKQGA 2462 Query 2765 IVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTD 2824 + + V LFV A+F ++ + + T F +K I+ G + + Sbjct 2463 GFK---RTYNFLWYVCLFVVALFIGVSFIDYTTTVTSF--HGYDFKYIENGQLKVFEAPL 2517 Query 2825 TCFANKHADFDTWFSQRGGSYT-NDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLH 2883 C N +F+ W + G T N CP++ V R VVPG+P + G L Sbjct 2518 HCVRNVFDNFNQWHEAKFGVVTTNSDKCPIVVGVSERI--NVVPGVPTNVYLV--GKTLV 2573 Query 2884 FLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSV 2943 F + +CY + C+ + CT + G V YCY+T+++EGS Sbjct 2574 FTLQAAFGNTGVCYDFDGVTTSD-----KCIFNSACTRLEGLGGDNV-YCYNTDLIEGSK 2627 Query 2944 AYESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSEAGVCVSTSG 3002 Y +L+P+ Y + ++FP G +R + T + YCR G C S GVC Sbjct 2628 PYSTLQPNAYYKYDAKNYVRFPEILARGFGLRTIRTLATRYCRVGECRDSHKGVCFGFD- 2686 Query 3003 RWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAY 3062 +W +N+ R G CG ++LL N+ + + +S ++ + A +T L + Sbjct 2687 KWYVNDG--RVDDGYICGDGLIDLLVNVLSIFSSSFSVVAMSGHMLFNFLFAAFITFLCF 2744 Query 3063 YFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSF 3122 +F+R FG+ S+ V L++ +T F +Y+++Y F T ++ Sbjct 2745 LVTKFKRVFGDLSYGVFTVVCATLINNISYVVTQ-NLFFMLLYAILYF--VFTRTVRYAW 2801 Query 3123 LAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFNGVSF-STFEEA 3178 + HI ++V + L+P+W+ + S F N K ++ +F G F TFE A Sbjct 2802 IWHIAYIVAYFLLIPWWLLTWF----SFAAFLELLPNVFKLKISTQLFEGDKFIGTFESA 2857 Query 3179 ALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKAL 3238 A TF+L+ Y +L + + + Y A YNKYKY+SG+ YR A HLAKA+ Sbjct 2858 AAGTFVLDMRSYERLINTI--SPEKLKNYAASYNKYKYYSGSASEADYRCACYAHLAKAM 2915 Query 3239 NDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDV 3298 D++ +D+LY PP S S LQSG +KMA PSG VE C+V+V G+T LNG+WL D Sbjct 2916 LDYAKDHNDMLYSPPTISYNST-LQSGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDT 2974 Query 3299 VYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTAN 3358 V CPRHVI S +L +Y+ HNF V V L V+G +M VL++KV +N Sbjct 2975 VTCPRHVIAPSTTVL-IDYDHAYSTMRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSN 3033 Query 3359 PKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDY- 3417 TPK+ F ++PG +F++LACY G SGV+ +R NFTIKGSF+NG+CGS G+N+ Sbjct 3034 VHTPKHVFKTLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRND 3093 Query 3418 DCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVIN 3477 V FCY+H +EL +G H G+D G+ YG F D+ + Q + ++ NV+A+LYAA++N Sbjct 3094 GTVEFCYLHQIELGSGAHVGSDFTGSVYGNFDDQPSLQVESANLMLSDNVVAFLYAALLN 3153 Query 3478 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQN 3537 G RW+L ++ FN AM Y ++ V+ L+A+TG++V + AS++ L Sbjct 3154 GCRWWLCSTRVNVDGFNEWAMANGYTSVSS--VECYSILAAKTGVSVEQLLASIQHL-HE 3210 Query 3538 GMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQS 3597 G G+ ILG + L DEFT +VV+Q GV QS + I G L ++ ++ Sbjct 3211 GFGGKNILGYSSLCDEFTLAEVVKQMYGVNLQSG--KVIFGLKTMFLFSVFFTMFWAELF 3268 Query 3598 TQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3657 ++ ++ P ++ +S MF+KHK FL +FLLP++ A +N V Sbjct 3269 I-YTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVL--D 3325 Query 3658 SWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL 3717 ++++ + + S+ ++ V + ++ L T R + + +++ + Sbjct 3326 YYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAV 3385 Query 3718 VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQ 3777 Y +Y +S+ + + S+ + V L+R IVF E F ++ Sbjct 3386 AYTYFYSGDF---LSLLVMFLCAISSDWYIGAIVFRLSRLIVFFSPE---SVFSVFGDVK 3439 Query 3778 CIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDA 3837 ++VY GY Y+G+ NR+F+ T+GVYD+ VS EF+YM + GL P DA Sbjct 3440 LTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDA 3499 Query 3838 FKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3897 L+ KLLG+GG CIK++TVQSK++D+KCT+VVLL L + + ++S WA CV LHN Sbjct 3500 LWLSFKLLGIGGDRCIKISTVQSKLTDLKCTNVVLLGCLSSMNIAANSSEWAYCVDLHNK 3559 Query 3898 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAF 3957 I L D +A +++LL+ LS ++ L + DN +TLQ++AS F S+PSY A+ Sbjct 3560 INLCDDPEKAQSMLLALLAFFLSKHSDFGLDGLIDSYFDNSSTLQSVASSFVSMPSYIAY 3619 Query 3958 ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQAR 4017 A++AYE A+ANG S ++K+LK+++N+AKSEFD + ++Q+K+ +MA+QA TQMYK+AR Sbjct 3620 ENARQAYEDAIANGSSSQLIKQLKRAMNIAKSEFDHEISVQKKINRMAEQAATQMYKEAR 3679 Query 4018 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDY 4077 S ++++KV SAM ++LF MLR+LD ++ ++N ARDG VPL++IP T+A+KL +V PD Sbjct 3680 SVNRKSKVISAMHSLLFGMLRRLDMSSVETVLNLARDGVVPLSVIPATSASKLTIVSPDL 3739 Query 4078 NTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAV 4137 +Y + YA +W + V D D + V + EI+ +N L WPLI+ R V Sbjct 3740 ESYSKIVCDGSVHYAGVVWTLNDVKDNDGRPVHVKEITKENVETLTWPLILNCER---VV 3796 Query 4138 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFP 4197 KLQNNE+ P L+Q A D NAL YNT G F+ A +S+ DLK+ ++ Sbjct 3797 KLQNNEIMPGKLKQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWE 3854 Query 4198 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA 4257 G TI EL+ PCRF+ +TP GP+VKYLYF+K LN L RG VLG + AT+RLQAG Sbjct 3855 YEGGCNTI--ELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQAGKQ 3912 Query 4258 TEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD 4317 TE+ NS +L+ CAF+VD A Y + + G +P++NC+KML G GQAIT + +AN + Sbjct 3913 TELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVDANTN 3972 Query 4318 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWK 4377 Q+S+GGAS CLYCR H+ HP+ G+C KGK VQ+P C DP+ F L+N VC VCG W Sbjct 3973 QDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVCGCWL 4031 Query 4378 GYGCSCDQLREPMLQSADAQSFLN 4401 G+GC+CD+ +QS D S+LN Sbjct 4032 GHGCACDR---TTIQSVDI-SYLN 4051 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 20/312 (6%) Query 1567 TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDT 1626 + + T D IN+ VV+ S + G+Q G DG D S EG + N DT Sbjct 1581 NVVLKITEDGINVKDVVVESSKSLGKQLGVVS-DGVD--------SFEGV---LPINTDT 1628 Query 1627 LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLTSIKWADNNCYLATALLTLQ 1684 + A E F + A K + YP V G + DNNC++ + LQ Sbjct 1629 VLSVAPEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQ 1688 Query 1685 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS- 1743 ++ F L + + G+ F + I + G+ GD E +S L ++ DS Sbjct 1689 YLKPTFKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDSI 1748 Query 1744 CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 1803 C C ++T+ V++ + ++ + G P ++ V Sbjct 1749 VTLEQYSTCDIC---KSTVVEVKSAIVCASVLKDGCDVGF-CPHRHKLRSRVKFVNGRVV 1804 Query 1804 FVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPI 1863 + P K + ++G++ GHY + DGA L S + Sbjct 1805 ITNVGEPIISQPSKLLNGIAYTTFSGSFDNGHYV-VYDAANNAVYDGARLFSSDLSTLAV 1863 Query 1864 TDVFYKENSYTT 1875 T + T+ Sbjct 1864 TAIVVVGGCVTS 1875 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 126/309 (41%), Gaps = 27/309 (9%) Query 993 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 1052 G D + +++ T+ V + ++ EV F+ Y NV DI V Sbjct 1228 GVFDIKNSSVNTVCFVDVDFH---SVEIEAGEVKPFAVY----KNVKFYLGDISHLVNCV 1280 Query 1053 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 1112 VVNAAN L HGGGVA A++ T +Q S DYI++NGPLKVG +L Sbjct 1281 SFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLECEKF-- 1338 Query 1113 HCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 1172 + +VVGP K E L+++ ++ + L PLLS GIFG +SL+ Sbjct 1339 NVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIENSLKALFSC---- 1394 Query 1173 VYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKI 1232 +K + F+ +E+Q K + ++ P I + R + + Sbjct 1395 ---------DINKPLQVFVYSSNEEQAVLKFLDGL--DLTPVIDDVDVVKPFRVEGNFSF 1443 Query 1233 KACVEEVTTTLEETKFLTENLLLYIDINGNLHPDS-ATLVSDIDITFLKKDAPYIVGDVV 1291 C + L N +L +D G L ++ + +L G++V Sbjct 1444 FDCGVNALDG--DIYLLFTNSILMLDKQGQLLDTKLNGILQQAALDYLATVKTVPAGNLV 1501 Query 1292 QEGVLTAVV 1300 + V + + Sbjct 1502 KLFVESCTI 1510 Score = 71.7 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 15/192 (8%) Query 1648 SALNHTKKWKYPQVN--GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAG 1705 L+ + + + + G+ + +DNNC+++T L+ LQ +L + +Q + G Sbjct 1034 HVLSIKQPFSFSFRDELGVRVLDQSDNNCWISTTLVQLQLTKLLDDSIEMQL----FKVG 1089 Query 1706 EAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGV 1765 + + + G LGD + +S L + +C + C CG++ G Sbjct 1090 KVDSIVQKCYELSHLISGSLGDSGKLLSELLK--EKYTCSITFEMSCD-CGKKFDDQVG- 1145 Query 1766 EAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAP-PAQYELKHGTFTCA 1824 ++ + F+KG C C K T LV + V + P P + C+ Sbjct 1146 --CLFWIMPYTKLFQKG--ECCICHKMQTYKLVSMKGTGVFVQDPAPIDIDAFPVKPICS 1201 Query 1825 SEYTGNYQCGHY 1836 S Y G GHY Sbjct 1202 SVYLGVKGSGHY 1213 Score = 67.1 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 74/545 (14%), Positives = 147/545 (27%), Gaps = 84/545 (15%) Query 153 PYEDFQENWNTKHSSGVTRELMREL-----NGGAYTRYVDNNFCGPDGYPLECIKDLLAR 207 P+ D N + ++++ +G +VD CG DG P+ Sbjct 77 PFSDRPLNLRGWLIFSNSNYVLQDFDVVFGHGAGSVVFVDKYMCGFDGKPVLP------- 129 Query 208 AGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFN 267 + E D+ + +++AW R + SYE Q I+ T Sbjct 130 -----KNMWEFRDYFNNNTDSIVIGGVTYQLAWDVIRKDLSYEQQNVLAIESIHYLGTT- 183 Query 268 GECPNFVFPLNSIIKTIQP---RVEKKKLDGFMGRIRSVYPVASPNE-------CNQMCL 317 + +P + + R+ N + Sbjct 184 ----GHTLKSGCKLTNAKPPKYSSKVVLSGEWNAVYRAFGSPFITNGMSLLDIIVKPVFF 239 Query 318 STLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSE 377 + +KC+ CG SW G C K +P + ++ C Sbjct 240 NAFVKCN-CGSESWSVG-AWDGYLSSCCGTPAKKLCVVPGNVVPGDVIITSTSAGCG--- 294 Query 378 VGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTG 437 + G V ++ + W + H+ Sbjct 295 -------------------------VKYYAGLVVKHITNITGVSLW------RVTAVHSD 323 Query 438 VVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLD-- 495 + S D LL + + V N+ L + F + +D Sbjct 324 GMFVAS-SSYDALLHRNSLDPFCFD-VNTLLSNQLRLAFLGASVTEDVKFAASTGVIDIS 381 Query 496 ---YKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI-LSPLYAFASEAARVVRSIFSRT 551 + + I+ + + V K A +I L P R V+SI S Sbjct 382 AGMFGLYDDILTNNKPWFVRKASGLFDAIWDAFVAAIKLVPTT--TGVLVRFVKSIASTV 439 Query 552 LETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLV------VMAYITGGV 605 L + + + ++ + A F+ D+ V + Sbjct 440 LTVSNGVIIMCADVPDAFQSVYRTFTQAICAAFDFSLDVFKIGDVKFKRLGDYVLTENAL 499 Query 606 VQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIV 665 V+LT++ + + +K + + + ++ + G+IV Sbjct 500 VRLTTEVVRGVRDARIKKAMFTKVVVGPTTEVKFSVIELATVNLRLVDCAPVVCPKGKIV 559 Query 666 TCAKE 670 A + Sbjct 560 VIAGQ 564 Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 61/340 (18%), Positives = 112/340 (33%), Gaps = 36/340 (11%) Query 637 EGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIG 696 E F+ D + +K T G + CAK + + + N FL Sbjct 732 EKFNFVTDWLKTLKLTLTS-----NGLLGNCAKRFRRVLVKLLDVYNGFLETVCSVAYTA 786 Query 697 GAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEV 756 G +K + +V S + R V RE + P + + +T + Sbjct 787 GVCIKYYAVNVPYVVISGFVSR--VIRRERCDMTFPCVSCVTFFYEFLDTCFGVSKPNAI 844 Query 757 VLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLK 816 ++ +L+ VE G ++G L + D Y A V FT Sbjct 845 DVEHLELKETV-----FVEPKDGGQFF-VSGDYLWYVVDDIYYPASCNG--VLPVAFTKL 896 Query 817 GGAPTKVTFGDDT-VIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVV 875 A K++F DD V +V+ V + FE ++ + L +K ++ + V+ Sbjct 897 --AGGKISFSDDVIVHDVEPTHKVKLIFEFEDDVVTSLCKKSFGKSIIYTGDWEGLHEVL 954 Query 876 ADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGD 935 A + + + +Y++DE G + ++ + S +P D Sbjct 955 TSA--------------MNVIGQHIKLPQFYIYDEEGGYDVSKPVMISQWPISNDSNGCV 1000 Query 936 CEEEEF----EPSTQYEYGTEDDYQGKPLEFGATSAALQP 971 E E E D +P E +++ Sbjct 1001 VEASTDFHQLECIVDDSVREEVDIIEQPFEEVEHVLSIKQ 1040 >sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus NL63 OX=277944 GN=1a PE=1 SV=1 Length=4060 Score = 2588 bits (6708), Expect = 0.0, Method: Composition-based stats. Identities = 755/2308 (33%), Positives = 1182/2308 (51%), Gaps = 121/2308 (5%) Query 2111 NELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMP 2170 ++LS + + G N TI + ++K+ + N + Sbjct 1856 SDLSTLAVTAIVVVGGCVTSN---VPTIVSEKISVMDKLDTGAQKFFQ--FGDFVMNNIV 1910 Query 2171 YFFTLLLQLCTFTRST----NSRIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKL 2226 F T LL + + R++ + ++ A P +S K+ + ++ +K Sbjct 1911 LFLTWLLSMFSLLRTSIMKHDIKVIAKAPKRTGVILTRS-FKYNIRSALFVIKQK----- 1964 Query 2227 INIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSI 2286 +I+ L L ++ + C GY ST YC S+ Sbjct 1965 WCVIV--TLFKFLLLLYAIYALVFMIVQFSPFNSLLCGDIVSGYEKST-FNKDIYCGNSM 2021 Query 2287 PCSVCLSGLDSLDTYPSLETIQITISSF-KWDLTAFGLVAEWFLAYILFTRFFYVLGLAA 2345 C +CL + + I L F ++ + ++ RF + +A Sbjct 2022 VCKMCLFSYQEFNDLDHTSLVWKHIRDPILISLQPFVILVILLIFGNMYLRFGLLYFVAQ 2081 Query 2346 IMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCN 2405 + F S+ H W + P + ++ + H++ GCN Sbjct 2082 FISTFGSFLGFH--QKQWFLHF-------VPFDVLCNEFLATFIVCKIVLFVRHIIVGCN 2132 Query 2406 SSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFI 2465 ++ C+ C K R RV TI+NG+ +SFYV ANGG FC HN+ CVNCD+F G+TFI Sbjct 2133 NADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCFCNKHNFFCVNCDSFGPGNTFI 2192 Query 2466 SDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLD 2525 + ++AR+L K + PT + I+D V NG LY + + S + + Sbjct 2193 NGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLYSGDTFWRYDFDITESKYSCKE 2252 Query 2526 NLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAE 2585 L+ N N IV++ S + K+A VY+SQL+C+PI L++ L+S + S + Sbjct 2253 VLKNCNV----LENFIVYNN-SGSNITQIKNACVYFSQLLCEPIKLVNSELLSTL--SVD 2305 Query 2586 VAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFISAARQGFVDSD 2645 + AYV+ ++F ++L ++ AE + ++ Sbjct 2306 FNGVLHKAYVDVLCNSF---FKELTANMSMAECKATLGLT-------------------- 2342 Query 2646 VETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKV-ENMTPRDLGACIDCSARHINAQVA 2704 V D V + +H+ D+ ++ S NN+ ++Y K + ++ D+ C+ ++ +N V Sbjct 2343 VSDDDFVSAVANAHRYDVLLSDLSFNNFFISYAKPEDKLSVYDIACCMRAGSKVVNHNVL 2402 Query 2705 KSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVVTTKIALKGGK 2764 +I ++W VKDF +LS++ +K + K L F LT + + V T I K G Sbjct 2403 IKESIPIVWGVKDFNTLSQEGKKYLVKTTKAKGLTFLLTFNDNQAITQVPATSIVAKQGA 2462 Query 2765 IVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTD 2824 + + V LFV A+F ++ + + T F +K I+ G + + Sbjct 2463 GFK---RTYNFLWYVCLFVVALFIGVSFIDYTTTVTSF--HGYDFKYIENGQLKVFEAPL 2517 Query 2825 TCFANKHADFDTWFSQRGGSYT-NDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLH 2883 C N +F+ W + G T N CP++ V R VVPG+P + G L Sbjct 2518 HCVRNVFDNFNQWHEAKFGVVTTNSDKCPIVVGVSERI--NVVPGVPTNVYLV--GKTLV 2573 Query 2884 FLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCYDTNVLEGSV 2943 F + +CY + C+ + CT + G V YCY+T+++EGS Sbjct 2574 FTLQAAFGNTGVCYDFDGVTTSD-----KCIFNSACTRLEGLGGDNV-YCYNTDLIEGSK 2627 Query 2944 AYESLRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDSEYCRHGTCERSEAGVCVSTSG 3002 Y +L+P+ Y + ++FP G +R + T + YCR G C S GVC Sbjct 2628 PYSTLQPNAYYKYDAKNYVRFPEILARGFGLRTIRTLATRYCRVGECRDSHKGVCFGFD- 2686 Query 3003 RWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAY 3062 +W +N+ R G CG ++LL N+ + + +S ++ + A +T L + Sbjct 2687 KWYVNDG--RVDDGYICGDGLIDLLVNVLSIFSSSFSVVAMSGHMLFNFLFAAFITFLCF 2744 Query 3063 YFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSF 3122 +F+R FG+ S+ V L++ +T F +Y+++Y F T ++ Sbjct 2745 LVTKFKRVFGDLSYGVFTVVCATLINNISYVVTQ-NLFFMLLYAILYF--VFTRTVRYAW 2801 Query 3123 LAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRV---VFNGVSF-STFEEA 3178 + HI ++V + L+P+W+ + S F N K ++ +F G F TFE A Sbjct 2802 IWHIAYIVAYFLLIPWWLLTWF----SFAAFLELLPNVFKLKISTQLFEGDKFIGTFESA 2857 Query 3179 ALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHLAKAL 3238 A TF+L+ Y +L + + + Y A YNKYKY+SG+ YR A HLAKA+ Sbjct 2858 AAGTFVLDMRSYERLINTI--SPEKLKNYAASYNKYKYYSGSASEADYRCACYAHLAKAM 2915 Query 3239 NDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDV 3298 D++ +D+LY PP S S LQSG +KMA PSG VE C+V+V G+T LNG+WL D Sbjct 2916 LDYAKDHNDMLYSPPTISYNST-LQSGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDT 2974 Query 3299 VYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTAN 3358 V CPRHVI S +L +Y+ HNF V V L V+G +M VL++KV +N Sbjct 2975 VTCPRHVIAPSTTVL-IDYDHAYSTMRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSN 3033 Query 3359 PKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDY- 3417 TPK+ F ++PG +F++LACY G SGV+ +R NFTIKGSF+NG+CGS G+N+ Sbjct 3034 VHTPKHVFKTLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRND 3093 Query 3418 DCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVIN 3477 V FCY+H +EL +G H G+D G+ YG F D+ + Q + ++ NV+A+LYAA++N Sbjct 3094 GTVEFCYLHQIELGSGAHVGSDFTGSVYGNFDDQPSLQVESANLMLSDNVVAFLYAALLN 3153 Query 3478 GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQN 3537 G RW+L ++ FN AM Y ++ V+ L+A+TG++V + AS++ L Sbjct 3154 GCRWWLCSTRVNVDGFNEWAMANGYTSVSS--VECYSILAAKTGVSVEQLLASIQHL-HE 3210 Query 3538 GMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQS 3597 G G+ ILG + L DEFT +VV+Q GV QS + I G L ++ ++ Sbjct 3211 GFGGKNILGYSSLCDEFTLAEVVKQMYGVNLQSG--KVIFGLKTMFLFSVFFTMFWAELF 3268 Query 3598 TQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPA 3657 ++ ++ P ++ +S MF+KHK FL +FLLP++ A +N V Sbjct 3269 I-YTNTIWINPVILTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVL--D 3325 Query 3658 SWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTL 3717 ++++ + + S+ ++ V + ++ L T R + + +++ + Sbjct 3326 YYIVKFLADHFNYNVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAV 3385 Query 3718 VYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQ 3777 Y +Y +S+ + + S+ + V L+R IVF E F ++ Sbjct 3386 AYTYFYSGDF---LSLLVMFLCAISSDWYIGAIVFRLSRLIVFFSPE---SVFSVFGDVK 3439 Query 3778 CIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDA 3837 ++VY GY Y+G+ NR+F+ T+GVYD+ VS EF+YM + GL P DA Sbjct 3440 LTLVVYLICGYLVCTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDA 3499 Query 3838 FKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHND 3897 L+ KLLG+GG CIK++TVQSK++D+KCT+VVLL L + + ++S WA CV LHN Sbjct 3500 LWLSFKLLGIGGDRCIKISTVQSKLTDLKCTNVVLLGCLSSMNIAANSSEWAYCVDLHNK 3559 Query 3898 ILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAF 3957 I L D +A +++LL+ LS ++ L + DN +TLQ++AS F S+PSY A+ Sbjct 3560 INLCDDPEKAQSMLLALLAFFLSKHSDFGLDGLIDSYFDNSSTLQSVASSFVSMPSYIAY 3619 Query 3958 ATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQAR 4017 A++AYE A+ANG S ++K+LK+++N+AKSEFD + ++Q+K+ +MA+QA TQMYK+AR Sbjct 3620 ENARQAYEDAIANGSSSQLIKQLKRAMNIAKSEFDHEISVQKKINRMAEQAATQMYKEAR 3679 Query 4018 SEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDY 4077 S ++++KV SAM ++LF MLR+LD ++ ++N ARDG VPL++IP T+A+KL +V PD Sbjct 3680 SVNRKSKVISAMHSLLFGMLRRLDMSSVETVLNLARDGVVPLSVIPATSASKLTIVSPDL 3739 Query 4078 NTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAV 4137 +Y + YA +W + V D D + V + EI+ +N L WPLI+ R V Sbjct 3740 ESYSKIVCDGSVHYAGVVWTLNDVKDNDGRPVHVKEITKENVETLTWPLILNCER---VV 3796 Query 4138 KLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFP 4197 KLQNNE+ P L+Q A D NAL YNT G F+ A +S+ DLK+ ++ Sbjct 3797 KLQNNEIMPGKLKQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWE 3854 Query 4198 KSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNA 4257 G TI EL+ PCRF+ +TP GP+VKYLYF+K LN L RG VLG + AT+RLQAG Sbjct 3855 YEGGCNTI--ELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQAGKQ 3912 Query 4258 TEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMD 4317 TE+ NS +L+ CAF+VD A Y + + G +P++NC+KML G GQAIT + +AN + Sbjct 3913 TELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVDANTN 3972 Query 4318 QESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWK 4377 Q+S+GGAS CLYCR H+ HP+ G+C KGK VQ+P C DP+ F L+N VC VCG W Sbjct 3973 QDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVCGCWL 4031 Query 4378 GYGCSCDQLREPMLQSADAQSFLNGFAV 4405 G+GC+CD+ +QS D S+LN V Sbjct 4032 GHGCACDR---TTIQSVDI-SYLNEQGV 4055 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 20/312 (6%) Query 1567 TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDT 1626 + + T D IN+ VV+ S + G+Q G DG D S EG + N DT Sbjct 1581 NVVLKITEDGINVKDVVVESSKSLGKQLGVVS-DGVD--------SFEGV---LPINTDT 1628 Query 1627 LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ--VNGLTSIKWADNNCYLATALLTLQ 1684 + A E F + A K + YP V G + DNNC++ + LQ Sbjct 1629 VLSVAPEVDWVAFYGFEKAALFASLDVKPYGYPNDFVGGFRVLGTTDNNCWVNATCIILQ 1688 Query 1685 QIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDS- 1743 ++ F L + + G+ F + I + G+ GD E +S L ++ DS Sbjct 1689 YLKPTFKSKGLNVLWNKFVTGDVGPFVSFIYFITMSSKGQKGDAEEALSKLSEYLISDSI 1748 Query 1744 CKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESP 1803 C C ++T+ V++ + ++ + G P ++ V Sbjct 1749 VTLEQYSTCDIC---KSTVVEVKSAIVCASVLKDGCDVGF-CPHRHKLRSRVKFVNGRVV 1804 Query 1804 FVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPI 1863 + P K + ++G++ GHY + DGA L S + Sbjct 1805 ITNVGEPIISQPSKLLNGIAYTTFSGSFDNGHYV-VYDAANNAVYDGARLFSSDLSTLAV 1863 Query 1864 TDVFYKENSYTT 1875 T + T+ Sbjct 1864 TAIVVVGGCVTS 1875 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 126/309 (41%), Gaps = 27/309 (9%) Query 993 GSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKV 1052 G D + +++ T+ V + ++ EV F+ Y NV DI V Sbjct 1228 GVFDIKNSSVNTVCFVDVDFH---SVEIEAGEVKPFAVY----KNVKFYLGDISHLVNCV 1280 Query 1053 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 1112 VVNAAN L HGGGVA A++ T +Q S DYI++NGPLKVG +L Sbjct 1281 SFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLECEKF-- 1338 Query 1113 HCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 1172 + +VVGP K E L+++ ++ + L PLLS GIFG +SL+ Sbjct 1339 NVFNVVGPRTGKHEHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIENSLKALFSC---- 1394 Query 1173 VYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKI 1232 +K + F+ +E+Q K + ++ P I + R + + Sbjct 1395 ---------DINKPLQVFVYSSNEEQAVLKFLDGL--DLTPVIDDVDVVKPFRVEGNFSF 1443 Query 1233 KACVEEVTTTLEETKFLTENLLLYIDINGNLHPDS-ATLVSDIDITFLKKDAPYIVGDVV 1291 C + L N +L +D G L ++ + +L G++V Sbjct 1444 FDCGVNALDG--DIYLLFTNSILMLDKQGQLLDTKLNGILQQAALDYLATVKTVPAGNLV 1501 Query 1292 QEGVLTAVV 1300 + V + + Sbjct 1502 KLFVESCTI 1510 Score = 71.7 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 15/192 (8%) Query 1648 SALNHTKKWKYPQVN--GLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAG 1705 L+ + + + + G+ + +DNNC+++T L+ LQ +L + +Q + G Sbjct 1034 HVLSIKQPFSFSFRDELGVRVLDQSDNNCWISTTLVQLQLTKLLDDSIEMQL----FKVG 1089 Query 1706 EAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGV 1765 + + + G LGD + +S L + +C + C CG++ G Sbjct 1090 KVDSIVQKCYELSHLISGSLGDSGKLLSELLK--EKYTCSITFEMSCD-CGKKFDDQVG- 1145 Query 1766 EAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAP-PAQYELKHGTFTCA 1824 ++ + F+KG C C K T LV + V + P P + C+ Sbjct 1146 --CLFWIMPYTKLFQKG--ECCICHKMQTYKLVSMKGTGVFVQDPAPIDIDAFPVKPICS 1201 Query 1825 SEYTGNYQCGHY 1836 S Y G GHY Sbjct 1202 SVYLGVKGSGHY 1213 Score = 67.1 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 74/545 (14%), Positives = 147/545 (27%), Gaps = 84/545 (15%) Query 153 PYEDFQENWNTKHSSGVTRELMREL-----NGGAYTRYVDNNFCGPDGYPLECIKDLLAR 207 P+ D N + ++++ +G +VD CG DG P+ Sbjct 77 PFSDRPLNLRGWLIFSNSNYVLQDFDVVFGHGAGSVVFVDKYMCGFDGKPVLP------- 129 Query 208 AGKASCTLSEQLDFIDTKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLAKKFDTFN 267 + E D+ + +++AW R + SYE Q I+ T Sbjct 130 -----KNMWEFRDYFNNNTDSIVIGGVTYQLAWDVIRKDLSYEQQNVLAIESIHYLGTT- 183 Query 268 GECPNFVFPLNSIIKTIQP---RVEKKKLDGFMGRIRSVYPVASPNE-------CNQMCL 317 + +P + + R+ N + Sbjct 184 ----GHTLKSGCKLTNAKPPKYSSKVVLSGEWNAVYRAFGSPFITNGMSLLDIIVKPVFF 239 Query 318 STLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYLPQNAVVKIYCPACHNSE 377 + +KC+ CG SW G C K +P + ++ C Sbjct 240 NAFVKCN-CGSESWSVG-AWDGYLSSCCGTPAKKLCVVPGNVVPGDVIITSTSAGCG--- 294 Query 378 VGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKCAYWVPRASANIGCNHTG 437 + G V ++ + W + H+ Sbjct 295 -------------------------VKYYAGLVVKHITNITGVSLW------RVTAVHSD 323 Query 438 VVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLD-- 495 + S D LL + + V N+ L + F + +D Sbjct 324 GMFVAS-SSYDALLHRNSLDPFCFD-VNTLLSNQLRLAFLGASVTEDVKFAASTGVIDIS 381 Query 496 ---YKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI-LSPLYAFASEAARVVRSIFSRT 551 + + I+ + + V K A +I L P R V+SI S Sbjct 382 AGMFGLYDDILTNNKPWFVRKASGLFDAIWDAFVAAIKLVPTT--TGVLVRFVKSIASTV 439 Query 552 LETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLV------VMAYITGGV 605 L + + + ++ + A F+ D+ V + Sbjct 440 LTVSNGVIIMCADVPDAFQSVYRTFTQAICAAFDFSLDVFKIGDVKFKRLGDYVLTENAL 499 Query 606 VQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIVGGQIV 665 V+LT++ + + +K + + + ++ + G+IV Sbjct 500 VRLTTEVVRGVRDARIKKAMFTKVVVGPTTEVKFSVIELATVNLRLVDCAPVVCPKGKIV 559 Query 666 TCAKE 670 A + Sbjct 560 VIAGQ 564 Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 61/340 (18%), Positives = 112/340 (33%), Gaps = 36/340 (11%) Query 637 EGVEFLRDGWEIVKFISTCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIG 696 E F+ D + +K T G + CAK + + + N FL Sbjct 732 EKFNFVTDWLKTLKLTLTS-----NGLLGNCAKRFRRVLVKLLDVYNGFLETVCSVAYTA 786 Query 697 GAKLKALNLGETFVTHSKGLYRKCVKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEV 756 G +K + +V S + R V RE + P + + +T + Sbjct 787 GVCIKYYAVNVPYVVISGFVSR--VIRRERCDMTFPCVSCVTFFYEFLDTCFGVSKPNAI 844 Query 757 VLKTGDLQPLEQPTSEAVEAPLVGTPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLK 816 ++ +L+ VE G ++G L + D Y A V FT Sbjct 845 DVEHLELKETV-----FVEPKDGGQFF-VSGDYLWYVVDDIYYPASCNG--VLPVAFTKL 896 Query 817 GGAPTKVTFGDDT-VIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVV 875 A K++F DD V +V+ V + FE ++ + L +K ++ + V+ Sbjct 897 --AGGKISFSDDVIVHDVEPTHKVKLIFEFEDDVVTSLCKKSFGKSIIYTGDWEGLHEVL 954 Query 876 ADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGD 935 A + + + +Y++DE G + ++ + S +P D Sbjct 955 TSA--------------MNVIGQHIKLPQFYIYDEEGGYDVSKPVMISQWPISNDSNGCV 1000 Query 936 CEEEEF----EPSTQYEYGTEDDYQGKPLEFGATSAALQP 971 E E E D +P E +++ Sbjct 1001 VEASTDFHQLECIVDDSVREEVDIIEQPFEEVEHVLSIKQ 1040 >sp|A7MG20|YMDB_CROS8 O-acetyl-ADP-ribose deacetylase OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=ymdB PE=3 SV=1 Length=180 Score = 193 bits (490), Expect = 1e-54, Method: Composition-based stats. Identities = 49/183 (27%), Positives = 78/183 (43%), Gaps = 25/183 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 ++ + + DI + V+VNAAN L GGGV GA+++A A+ Sbjct 1 MSGRINVVQGDIT----LIDVDVIVNAANPSLMGGGGVDGAIHRAAGPALLAACRQVRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGED--IQLLKSAYEN------FNQHEVL 1144 G + G + + +L AK +H VGP G+D QLL AY N N + + Sbjct 57 QGECQPGHAVITEAGDLAAKAVVHTVGPVWRGGQDNEPQLLADAYRNSLQLVAANGYNSV 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSSFLE 1192 P +S GI+G + ++ +TV VY +D+ LY +L+ + E Sbjct 117 AFPAISTGIYGYPKAAAAQIAFETVSDYLTRHPQPKQVYFVCYDEENFLLYQRLLGQYDE 176 Query 1193 MKS 1195 Sbjct 177 QPG 179 >sp|C9Y0V8|YMDB_CROTZ O-acetyl-ADP-ribose deacetylase OS=Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032) OX=693216 GN=ymdB PE=3 SV=1 Length=176 Score = 191 bits (486), Expect = 3e-54, Method: Composition-based stats. Identities = 48/180 (27%), Positives = 78/180 (43%), Gaps = 25/180 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 ++ + + DI ++ V+VNAAN L GGGV GA+++A ++ Sbjct 1 MSGRINVVQGDIT----RIDTDVIVNAANPSLMGGGGVDGAIHRAAGPSLLAACKVVRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGED--IQLLKSAYEN------FNQHEVL 1144 G + G + + +L AK +H VGP G D QLL AY N N + + Sbjct 57 QGECQPGHAVITEAGDLAAKAVIHTVGPIWRGGHDNEPQLLADAYRNSLELVTANGYNSV 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSSFLE 1192 P +S GI+G + ++ +TV VY +D+ LY +L+ + E Sbjct 117 AFPAISTGIYGYPKAAAAQIAFETVSDYLTRRPQPKQVYFVCYDEENFLLYQRLLGQYDE 176 >sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=ymdB PE=3 SV=2 Length=177 Score = 188 bits (476), Expect = 8e-53, Method: Composition-based stats. Identities = 46/177 (26%), Positives = 77/177 (44%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++ DI + + V+VNAAN L GGGV GA+++A + Sbjct 1 MKSRIHVLQGDITQ----LAVDVIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + NL A+ +H VGP GE + QLL AY N N ++ + Sbjct 57 QGECPTGHAVITIAGNLPARAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + + V TV +Y +D+ LY++L++ Sbjct 117 AFPAISTGVYGFPRAAAAEIAVKTVSDFITRHALPEQIYFVCYDEENSRLYNRLLTQ 173 >sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobacter rodentium (strain ICC168) OX=637910 GN=ymdB PE=3 SV=2 Length=177 Score = 187 bits (475), Expect = 1e-52, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 76/177 (43%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++ + DI A +VNAAN L GGGV GA+++A + Sbjct 1 MNSRIHVIHGDITTVA----VDAIVNAANPSLMGGGGVDGAIHRAAGPELLEACMTVRRQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + + L AK +H VGP GE + QLL AY N N ++ + Sbjct 57 QGECPPGHAVITAAGRLPAKAVIHTVGPIWRGGEHNEAQLLHDAYLNSLNLALANGYQSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + + V+T+ +Y +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVNTISEFITRRASPEQIYFVCYDEETTRLYQRLLTQ 173 >sp|B4T2X8|YMDB_SALNS O-acetyl-ADP-ribose deacetylase OS=Salmonella newport (strain SL254) OX=423368 GN=ymdB PE=3 SV=1 Length=179 Score = 187 bits (475), Expect = 1e-52, Method: Composition-based stats. Identities = 47/177 (27%), Positives = 75/177 (42%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + + V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEIAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQ 173 >sp|B5F961|YMDB_SALA4 O-acetyl-ADP-ribose deacetylase OS=Salmonella agona (strain SL483) OX=454166 GN=ymdB PE=3 SV=1 Length=179 Score = 187 bits (474), Expect = 1e-52, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 76/177 (43%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G + G + + L AK +H VGP GE + +LL++AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEYQEAELLEAAYRNCLLLAEANHFRSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQ 173 >sp|P67341|YMDB_SALTY O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=ymdB PE=3 SV=1 Length=179 Score = 187 bits (474), Expect = 2e-52, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQ 173 >sp|P67342|YMDB_SALTI O-acetyl-ADP-ribose deacetylase OS=Salmonella typhi OX=90370 GN=ymdB PE=3 SV=1 Length=179 Score = 187 bits (474), Expect = 2e-52, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G + G + + L AK +H VGP GE + +LL+ AY N N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQ 173 >sp|B5RBF3|YMDB_SALG2 O-acetyl-ADP-ribose deacetylase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=ymdB PE=3 SV=1 Length=179 Score = 185 bits (470), Expect = 5e-52, Method: Composition-based stats. Identities = 47/177 (27%), Positives = 75/177 (42%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +T + + DI + + +VNAAN L GGGV GA+++A A+ Sbjct 1 MTSRLQVIQGDITQ----LSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G + G + + L AK +H VGP GE + +LL+ AY + N + Sbjct 57 QGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRSCLLLAEANHFRSI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + V V TV VY +D+ LY +L++ Sbjct 117 AFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQ 173 >sp|A8AI35|YMDB_CITK8 O-acetyl-ADP-ribose deacetylase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=ymdB PE=3 SV=1 Length=177 Score = 184 bits (466), Expect = 2e-51, Method: Composition-based stats. Identities = 47/177 (27%), Positives = 79/177 (45%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++++ DI + + V+VNAAN L GGGV GA+++A + Sbjct 1 MKSRIHVQHGDITQ----LTVDVIVNAANASLLGGGGVDGAIHRAAGPTLLEACKKVRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + NL AK +H VGP G+ + QLL+ AY N N + + Sbjct 57 QGECPAGHAVITLAGNLPAKAVIHTVGPVWRGGDHNESQLLEDAYFNSLQLVLANGYRSV 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G +G + + V+TV VY +D+ LY++L++ Sbjct 117 AFPAISTGAYGYPRPAAAEIAVNTVADFLARHALPEQVYFVCYDEETARLYERLLTQ 173 >sp|P0A8D6|YMDB_ECOLI O-acetyl-ADP-ribose deacetylase OS=Escherichia coli (strain K12) OX=83333 GN=ymdB PE=1 SV=1 Length=177 Score = 183 bits (464), Expect = 3e-51, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++ DI + + V+VNAAN L GGGV GA+++A A+ Sbjct 1 MKTRIHVVQGDITK----LAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + +L AK +H VGP GE + QLL+ AY N N + + Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + + V TV VY +D+ LY++L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 >sp|P0A8D7|YMDB_ECOL6 O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ymdB PE=3 SV=1 Length=177 Score = 183 bits (464), Expect = 3e-51, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++ DI + + V+VNAAN L GGGV GA+++A A+ Sbjct 1 MKTRIHVVQGDITK----LAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + +L AK +H VGP GE + QLL+ AY N N + + Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + + V TV VY +D+ LY++L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 >sp|P0A8D8|YMDB_ECO57 O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O157:H7 OX=83334 GN=ymdB PE=3 SV=1 Length=177 Score = 183 bits (464), Expect = 3e-51, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++ DI + + V+VNAAN L GGGV GA+++A A+ Sbjct 1 MKTRIHVVQGDITK----LAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + +L AK +H VGP GE + QLL+ AY N N + + Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + + V TV VY +D+ LY++L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 >sp|Q0T5Z6|YMDB_SHIF8 O-acetyl-ADP-ribose deacetylase OS=Shigella flexneri serotype 5b (strain 8401) OX=373384 GN=ymdB PE=3 SV=1 Length=177 Score = 182 bits (461), Expect = 9e-51, Method: Composition-based stats. Identities = 47/177 (27%), Positives = 77/177 (44%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++ DI + + V+VNAAN L GGGV GA+++A A+ Sbjct 1 MKTRIHVVQGDITK----LAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + +L AK +H VGP GE + QLL+ AY N N + + Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++ + + V TV VY +D+ LY++L++ Sbjct 117 AFPAISTGVYSYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 >sp|A4W960|YMDB_ENT38 O-acetyl-ADP-ribose deacetylase OS=Enterobacter sp. (strain 638) OX=399742 GN=ymdB PE=3 SV=1 Length=180 Score = 179 bits (453), Expect = 1e-49, Method: Composition-based stats. Identities = 47/175 (27%), Positives = 75/175 (43%), Gaps = 25/175 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + + + DI ++ V+VNAAN L GGGV GA+++A + Sbjct 1 MKPQIEVVVGDITT----MEVDVIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + +L AK +H VGP GE + + L+ AY N N ++ L Sbjct 57 QGECAPGHAVITIAGDLPAKAVIHAVGPVWQGGENHEARTLQDAYLNCLRLAAANGYKTL 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLV 1187 P +S G++G + + VDTV VY +D+ LY +L+ Sbjct 117 AFPAISTGVYGYPKAAAAEIAVDTVSEFLTRKPLPERVYFVCYDEENAQLYQRLL 171 >sp|D5CE05|YMDB_ENTCC O-acetyl-ADP-ribose deacetylase OS=Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56) OX=716541 GN=ymdB PE=3 SV=1 Length=180 Score = 178 bits (452), Expect = 1e-49, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 76/177 (43%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + + + + DI + V+VNAAN L GGGV GA+++A + Sbjct 1 MKPQIDVIHGDITT----MHVDVIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + +L AK +H VGP + G+ + +L+ AY N N ++ + Sbjct 57 QGECPPGHAVITLAGDLPAKAVIHAVGPIWHGGDRHEASILEEAYRNCLRLAADNGYKTM 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + + VDTV V FD+ LY +L++ Sbjct 117 AFPAISTGVYGYPKAAAATIAVDTVYRYLSLKPMPEKVTFVCFDEETLHLYQRLLTQ 173 >sp|Q32E73|YMDB_SHIDS O-acetyl-ADP-ribose deacetylase OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=ymdB PE=3 SV=1 Length=177 Score = 177 bits (449), Expect = 3e-49, Method: Composition-based stats. Identities = 46/177 (26%), Positives = 76/177 (43%), Gaps = 25/177 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +++ DI + + V+VN N L GGGV GA+++A A+ Sbjct 1 MKTRIHVVQGDITK----LAVDVIVNVTNPSLMGGGGVDGAIHRAAGPALLDACLKVRQQ 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVL 1144 G G + + +L AK +H VGP GE + QLL+ AY N N + + Sbjct 57 QGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSV 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSS 1189 P +S G++G + + V TV VY +D+ LY++L++ Sbjct 117 AFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 >sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiella variicola (strain At-22) OX=640131 GN=ymdB PE=3 SV=1 Length=175 Score = 177 bits (449), Expect = 3e-49, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 75/172 (44%), Gaps = 25/172 (15%) Query 1040 IKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKV 1099 + DI ++ V+VNAAN L GGGV GA+++A A+ + G Sbjct 7 VILGDITT----LEVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPP 62 Query 1100 GGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPLLS 1150 G + + +L A +H VGP + G+ + Q L AY+N N + + P +S Sbjct 63 GHAVITIAGDLPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAIS 122 Query 1151 AGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSSF 1190 G++G + + V TV V FD+ +Y +L++S+ Sbjct 123 TGVYGYPKEEAAEIAVRTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASY 174 >sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=ymdB PE=3 SV=1 Length=175 Score = 177 bits (449), Expect = 3e-49, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 75/172 (44%), Gaps = 25/172 (15%) Query 1040 IKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKV 1099 + DI ++ V+VNAAN L GGGV GA+++A A+ + G Sbjct 7 VILGDITT----LEVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPP 62 Query 1100 GGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLAPLLS 1150 G + + +L A +H VGP + G+ + Q L AY+N N + + P +S Sbjct 63 GHAVITIAGDLPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAIS 122 Query 1151 AGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN---LYDKLVSSF 1190 G++G + + V TV V FD+ +Y +L++S+ Sbjct 123 TGVYGYPKEEAAEIAVRTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASY 174 >sp|E1SDF1|YMDB1_PANVC O-acetyl-ADP-ribose deacetylase 1 OS=Pantoea vagans (strain C9-1) OX=712898 GN=ymdB1 PE=3 SV=1 Length=171 Score = 174 bits (442), Expect = 2e-48, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 22/171 (13%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 1095 + + DI + V +VNAAN L GGGV GA+++A + E G Sbjct 2 KKITVIQGDITK----VSAEAIVNAANSSLLGGGGVDGAIHRAGGPVILAECQLIRNRQG 57 Query 1096 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYEN------FNQHEVLLA 1146 KVG + + NL A + +H VGP + G ++ LLK AY++ ++ + + Sbjct 58 GCKVGDAVITGAGNLPADYVIHTVGPRWSDGRHDEDALLKRAYQSCFKLVDYHGIKTVSF 117 Query 1147 PLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLYDKLVS 1188 P +S GI+G + + +D ++ NV L FD YD + Sbjct 118 PNISTGIYGFPKERAATIALDVIKHCIAENRTLENVNLVCFDAENYDLYLK 168 >sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) OX=189518 GN=LA_4133 PE=4 SV=1 Length=175 Score = 169 bits (429), Expect = 2e-46, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 81/178 (46%), Gaps = 25/178 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + + + + DI + ++ +VNAAN L GGGV GA+++A + E Sbjct 1 MNNKIKLIKEDITQ----LEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREK 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYEN----FNQH--EVL 1144 G KVG + + + L AK +H VGP + G + +LL +AY+N H + + Sbjct 57 QGECKVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFD---KNLYDKLVSSF 1190 P +S GI+ + ++ + +V V+ FD +Y+KL+ ++ Sbjct 117 AFPNISTGIYHFPKERAAKIAIQSVTEFLKQDNQIQTVFFVCFDFENLEIYNKLLQTY 174 >sp|Q72M93|Y3295_LEPIC Macro domain-containing protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=LIC_13295 PE=4 SV=1 Length=175 Score = 169 bits (428), Expect = 2e-46, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 81/178 (46%), Gaps = 25/178 (14%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + + + + DI + ++ +VNAAN L GGGV GA+++A + E Sbjct 1 MNNKIKLIKEDITQ----LEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREK 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYEN----FNQH--EVL 1144 G KVG + + + L AK +H VGP + G + +LL +AY+N H + + Sbjct 57 QGECKVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFD---KNLYDKLVSSF 1190 P +S GI+ + ++ + +V V+ FD +Y+KL+ ++ Sbjct 117 AFPNISTGIYHFPKERAAKIAIQSVTKFLKQDNQIQTVFFVCFDFENLEIYNKLLQTY 174 >sp|Q96XY5|Y2383_SULTO Uncharacterized protein STK_23830 OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=STK_23830 PE=4 SV=1 Length=182 Score = 166 bits (419), Expect = 4e-45, Method: Composition-based stats. Identities = 53/184 (29%), Positives = 85/184 (46%), Gaps = 22/184 (12%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V I DI E ++ +VNAAN YL+HGGGVA A+ + +Q ES +Y+ GP+ Sbjct 3 VKIIKGDITE----IEAEAIVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPV 58 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENF------NQHEVLLAPLLS 1150 GG V S L AK+ +H VGP E + L+ A N + + P +S Sbjct 59 PTGGVAVTSAGKLKAKYVIHAVGPRYGI-EGEEKLEEAIRNALRKAEELKLSSIALPAIS 117 Query 1151 AGIFGADPIHSLRVCVDTVRTN---------VYLAVFDKNLYDKLVSSF-LEMKSEKQVE 1200 GI+G V ++ + ++++ + Y+ V+ F E+ EK + Sbjct 118 TGIYGYPYEICAEKMVKVIKEEYTNFKHLNTIIVSLYSEEAYNIFVNIFERELAKEKNIT 177 Query 1201 QKIA 1204 K++ Sbjct 178 LKMS 181 >sp|Q97UU4|Y2899_SACS2 Uncharacterized protein SSO2899 OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=SSO2899 PE=4 SV=1 Length=177 Score = 161 bits (408), Expect = 1e-43, Method: Composition-based stats. Identities = 49/171 (29%), Positives = 83/171 (49%), Gaps = 17/171 (10%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 +Y+ DI E ++ +VNAAN YL+HGGGVA A+ + +Q ESD+Y+ GP+ Sbjct 10 IYLIKGDITE----IEADAIVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFGPV 65 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHE-----VLLAPLLSA 1151 VG V S L AK+ +H VGP + +L + +++ + + + P +S Sbjct 66 PVGEVAVTSAGKLKAKYVIHAVGPRYGIEGEDKLESAIFKSLLKADELSLSSIAMPAIST 125 Query 1152 GIFGADPIHSLRVCVDTVR-------TNVYLAVFDKNLYDKLVSSFLEMKS 1195 GI+G R+ + ++ V + ++ K+ YD S F + Sbjct 126 GIYGYPFEICARIMANVLKGYKPKTLRKVMICLYTKDAYDVFKSIFNSILK 176 >sp|Q8RB30|Y995_CALS4 Macro domain-containing protein TTE0995 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=TTE0995 PE=4 SV=1 Length=175 Score = 161 bits (407), Expect = 2e-43, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 21/179 (12%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + + + + +IV++ + +VNAAN L GGGV GA++KA A+ E Sbjct 1 MKEKIKLIKGNIVDQ----EVDAIVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREK 56 Query 1094 NGPLKVGGSCVLSGHNL-AKHCLHVVGPNV--NKGEDIQLLKSAY----ENFNQH--EVL 1144 G G + + NL AK+ +H VGP + LL SAY + +++ + + Sbjct 57 QGGCPTGHAVITGAGNLKAKYVIHAVGPIWKGGNHNEDNLLASAYIESLKLADEYNVKTI 116 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR--------TNVYLAVFDKNLYDKLVSSFLEMKS 1195 P +S G +G + R+ + V V +F Y+ ++ E+ Sbjct 117 AFPSISTGAYGFPVERAARIALRVVSDYLEGSSIKEVRFVLFSDRDYEVYSKAYEELDK 175 >sp|Q8ZXT3|Y1111_PYRAE Uncharacterized protein PAE1111 OS=Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2) OX=178306 GN=PAE1111 PE=4 SV=1 Length=182 Score = 160 bits (404), Expect = 4e-43, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 77/169 (46%), Gaps = 21/169 (12%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V + DI E V+ +VNAAN YL+HGGGVAGA+ + +Q ES +++ +GP+ Sbjct 10 VVLMRGDITE----VEADAIVNAANSYLEHGGGVAGAIVRKGGQVIQEESREWVRKHGPV 65 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENF------NQHEVLLAPLLS 1150 VG V S L AK+ +H VGP E I+ L A +N + P +S Sbjct 66 PVGDVAVTSAGRLKAKYVIHAVGPRCG-VEPIEKLAEAVKNALLKAEELGLVSIALPAIS 124 Query 1151 AGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSSF 1190 GIFG + +R + + ++ + Y K + F Sbjct 125 TGIFGCPYDAAAEQMATAIREVAPALRSIRRILVVLYGEEAYQKFLEVF 173 >sp|E1PL40|YMDB2_PANVC O-acetyl-ADP-ribose deacetylase 2 OS=Pantoea vagans (strain C9-1) OX=712898 GN=ymdB2 PE=3 SV=1 Length=171 Score = 159 bits (401), Expect = 7e-43, Method: Composition-based stats. Identities = 44/171 (26%), Positives = 71/171 (42%), Gaps = 22/171 (13%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 1095 + + + DI A ++N AN L GGGV GA+++A + E + G Sbjct 2 NKITVIQGDITNIAS----EAIINVANSSLLGGGGVDGAIHRAGGPVILAECQAIRSRQG 57 Query 1096 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG---EDIQLLK---SAYENFNQHEV--LLA 1146 KVG + + L A + +H VGP + G ED QL S ++ H + + Sbjct 58 GCKVGEAVITGAGTLPADYVIHTVGPRWSDGRHNEDTQLKSVYLSCFKLVGHHGIKTVSF 117 Query 1147 PLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLYDKLVS 1188 P +S GI+G + + +D ++ V L FD YD + Sbjct 118 PNISTGIYGFPKKRAAAIALDVIKHCIAENRTIEKVNLVCFDAENYDLYLK 168 >sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) OX=188937 GN=MA_1614 PE=4 SV=1 Length=195 Score = 158 bits (399), Expect = 3e-42, Method: Composition-based stats. Identities = 50/201 (25%), Positives = 84/201 (42%), Gaps = 29/201 (14%) Query 1014 MELTPVVQTIEVNSFSGYLKLTDN---VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG 1070 P + ++ NS L ++ N + I DI E +K +VNAAN L GGG Sbjct 2 DPQKPYKKELKRNSRKRSLNMSQNSERIRIIERDITE----LKVDAIVNAANNTLLGGGG 57 Query 1071 VAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--D 1127 V GA+++A + E NG G + + G+ L AK+ +H VGP +G + Sbjct 58 VDGAIHRAAGPGLLEEC---RTLNG-CPTGEAKITKGYLLPAKYVIHTVGPIWQEGTKGE 113 Query 1128 IQLLKSAYEN----FNQHE--VLLAPLLSAGIFGADPIHSLRVCVDTVR---------TN 1172 + L S Y +++ + P +S G +G + R+ V V+ Sbjct 114 DEFLASCYRKSLELARKYDVKTIAFPTISTGAYGFPSERAARIAVSQVKEFLKVNELPEI 173 Query 1173 VYLAVFDKNLYDKLVSSFLEM 1193 V+L ++K + + E Sbjct 174 VFLVCYNKEACKNIKKALEEN 194 >sp|Q8Q0F9|Y177_METMA Macro domain-containing protein MM_0177 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) OX=192952 GN=MM_0177 PE=4 SV=1 Length=187 Score = 157 bits (396), Expect = 7e-42, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 75/164 (46%), Gaps = 26/164 (16%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 1095 D + I DIV+ ++ +VNAAN L GGGV GA+++A A+ E NG Sbjct 19 DRIRIFEGDIVK----MRVDAIVNAANNTLLGGGGVDGAIHRAAGPALLEECK---TLNG 71 Query 1096 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLA 1146 G + + SG+ L AK+ +H VGP GE + +LL S Y + + + Sbjct 72 -CPTGEAKITSGYLLPAKYIIHTVGPVWQGGEKGEDELLASCYRKSLELARDYKIKTIAF 130 Query 1147 PLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKN 1181 P +S G +G + + V V+ VYL ++K+ Sbjct 131 PAISTGAYGFPSERAAGIAVSQVKEFLQKNEIPETVYLVCYNKD 174 >sp|Q4J9D2|Y1252_SULAC Uncharacterized protein Saci_1252 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=Saci_1252 PE=4 SV=1 Length=181 Score = 154 bits (389), Expect = 5e-41, Method: Composition-based stats. Identities = 47/169 (28%), Positives = 77/169 (46%), Gaps = 17/169 (10%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V ++N DI + V+ +VNAAN YL HGGGVA A+ ++ +Q ESD+Y+ NGP+ Sbjct 13 VILENGDITK----VEADAIVNAANSYLSHGGGVALAIVRSGGYIIQEESDEYVRRNGPV 68 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHE-----VLLAPLLSA 1151 VG V + L A++ +H VGP D +L + + + + + P +S Sbjct 69 PVGEVAVTTAGKLKARYVIHAVGPRYGIEGDDKLESAIRRSLEKADELKLSSIALPAIST 128 Query 1152 GIFGADPIHSLRVCVDTVRT-------NVYLAVFDKNLYDKLVSSFLEM 1193 GI+G R+ ++ + + V+ Y F Sbjct 129 GIYGYPYEICARIMSKVMKEYKPKFLKRILVVVYGDQAYSVFKKVFDNS 177 >sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=CT2219 PE=4 SV=1 Length=172 Score = 152 bits (383), Expect = 2e-40, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 26/165 (16%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 ++ ADI + +VNAAN L GGGV GA+++A + + G Sbjct 7 IHAIKADITS----LTVDAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACREL----GGC 58 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENFNQ------HEVLLAPL 1148 G + + G+ L A +H VGP + G + +LL S Y N + + P Sbjct 59 LTGEAKITKGYRLPATFVIHTVGPVWHGGNHGEAELLASCYRNSLKLAIEHHCRTIAFPS 118 Query 1149 LSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLYD 1184 +S GI+G + + + TVR V F D Sbjct 119 ISTGIYGYPVEQAAAIAITTVREMLADERGIEKVIFCCFSDRDLD 163 >sp|Q7MTZ7|MACRO_PORGI Macro domain-containing protein PG1779 OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) OX=242619 GN=PG_1779 PE=2 SV=1 Length=164 Score = 145 bits (366), Expect = 4e-38, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 73/170 (43%), Gaps = 24/170 (14%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 1095 + I DI + + +VNAAN L GGGV GA+++A + E NG Sbjct 2 GKITITVGDIT----RFEGDAIVNAANHTLLGGGGVDGAIHRAAGPELLEEC---RTLNG 54 Query 1096 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN------FNQHEVLLA 1146 G S + G+NL A++ +H VGP + G+ + +LL S Y + + Sbjct 55 -CPTGESKITGGYNLPAQYVIHTVGPVWHGGQHGEPELLASCYRTSLSIALDKGLKSIAF 113 Query 1147 PLLSAGIFGADPIHSLRVCVDTVRT-------NVYLAVFDKNLYDKLVSS 1189 P +S G++ + R+ + T+ +V + F + + ++ Sbjct 114 PCISTGVYRYPKDQAARIALATIGEIIADRPIDVTIVCFSEADKEFYITQ 163 >sp|Q8Y3S3|Y2759_LISMO Macro domain-containing protein lmo2759 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=lmo2759 PE=4 SV=1 Length=176 Score = 145 bits (365), Expect = 7e-38, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 75/175 (43%), Gaps = 27/175 (15%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 + I DI E+ + V+VNAAN L GGGV GA+++A + E + I G Sbjct 3 ITIVKGDITEQ----EVDVIVNAANSGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSC 58 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAY------ENFNQHEVLLAPL 1148 G + + S +L A + +H VGP GE + L S Y + P Sbjct 59 PAGEAVITSAGDLKATYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPN 118 Query 1149 LSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKN---LYDKLVSS 1189 +S G++G + V + TVR + FD+ LY+KL++S Sbjct 119 ISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIKEIRFVCFDEENLKLYNKLINS 173 >sp|Q71W03|Y2748_LISMF Macro domain-containing protein LMOf2365_2748 OS=Listeria monocytogenes serotype 4b (strain F2365) OX=265669 GN=LMOf2365_2748 PE=4 SV=1 Length=176 Score = 144 bits (363), Expect = 1e-37, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 75/175 (43%), Gaps = 27/175 (15%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 + + DI E+ V+VNAAN L GGGV GA+++A + E + I G Sbjct 3 ITVVKGDITEQ----DVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGTC 58 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAY------ENFNQHEVLLAPL 1148 G + + S +L A + +H VGP GE + L S Y + + P Sbjct 59 PAGEAVITSAGDLQASYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPN 118 Query 1149 LSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKN---LYDKLVSS 1189 +S G++G + V + TVR + FD+ LY+KL++S Sbjct 119 ISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIEEIRFVCFDEENLKLYNKLINS 173 >sp|Q8Y2K1|Y334_RALN1 Macro domain-containing protein RSc0334 OS=Ralstonia nicotianae (strain GMI1000) OX=267608 GN=RSc0334 PE=4 SV=1 Length=171 Score = 144 bits (362), Expect = 1e-37, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 22/159 (14%) Query 1048 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 1107 + + +VNAAN L GGGV GA+++A + A +G + G + + G Sbjct 14 DITTLACDAIVNAANSALLGGGGVDGAIHRAAGPELLEAC---RALHG-CRTGQAKITPG 69 Query 1108 HNL-AKHCLHVVGPNVNKG--EDIQLLKSAYEN----FNQHE--VLLAPLLSAGIFGADP 1158 L A++ +H VGP G ++ LL + Y N QH+ + P +S G++G P Sbjct 70 FLLPARYIIHTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTGVYGFPP 129 Query 1159 IHSLRVCVDTVRT------NVYLAVF---DKNLYDKLVS 1188 + + V TVR ++ F D LY+ ++ Sbjct 130 QLAAPIAVRTVREHGADLDDIVFCCFSAADLALYETALN 168 >sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VPA0103 PE=4 SV=1 Length=170 Score = 144 bits (362), Expect = 1e-37, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 68/155 (44%), Gaps = 14/155 (9%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG-P 1096 + + DI +VNAAN + GGGV GA+++A A+ +G Sbjct 4 ISLVQGDITT----AHVDAIVNAANPRMLGGGGVDGAIHRAAGPALINACYAVDDVDGIR 59 Query 1097 LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-LLKSAYEN------FNQHEVLLAPL 1148 G + + NL A++ +H VGP +K D + +L+SAY+ N + + P Sbjct 60 CPFGDARITEAGNLNARYVIHAVGPIYDKFADPKTVLESAYQRSLDLALANHCQSVALPA 119 Query 1149 LSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLY 1183 +S G++G P + V + + Y A D Y Sbjct 120 ISCGVYGYPPQEAAEVAMAVCQRPEY-AALDMRFY 153 >sp|Q9WYX8|Y508_THEMA Uncharacterized protein TM_0508 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0508 PE=3 SV=1 Length=599 Score = 156 bits (393), Expect = 2e-37, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 15/157 (10%) Query 1023 IEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNA 1082 EV Y + I DI E + +VNAAN YLKHGGGVAGA+ +A + Sbjct 416 AEVRKELEYK--GKKIRIVKGDITRE----EVDAIVNAANEYLKHGGGVAGAIVRAGGSV 469 Query 1083 MQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNK---GEDIQLLKSAYENF 1138 +Q ESD + G + G + V S L AK+ +H VGP GED L K+ Y Sbjct 470 IQEESDRIVQERGRVPTGEAVVTSAGKLKAKYVIHTVGPVWRGGSHGEDELLYKAVYNAL 529 Query 1139 -----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVR 1170 + + + P +S GIFG ++ + +R Sbjct 530 LRAHELKLKSISMPAISTGIFGFPKERAVGIFSKAIR 566 >sp|Q926Y8|Y2902_LISIN Macro domain-containing protein lin2902 OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=lin2902 PE=4 SV=1 Length=176 Score = 144 bits (362), Expect = 2e-37, Method: Composition-based stats. Identities = 49/176 (28%), Positives = 74/176 (42%), Gaps = 27/176 (15%) Query 1037 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 1096 ++ + DI E+ V+VNAAN L GGGV GA+++A + E + I G Sbjct 2 DITVVKGDITEQ----NVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGS 57 Query 1097 LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAY------ENFNQHEVLLAP 1147 G + + S +L A +H VGP GE + L S Y + P Sbjct 58 CPAGEAVITSAGDLKAHFIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFP 117 Query 1148 LLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKN---LYDKLVSS 1189 +S G++G + V + TVR V FD+ LY+KL++S Sbjct 118 NISTGVYGFPKKLAAEVALYTVRKWAEEEYDSSIKEVRFVCFDEENLTLYNKLINS 173 >sp|Q9ZBG3|Y6450_STRCO Macro domain-containing protein SCO6450 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=SCO6450 PE=4 SV=1 Length=169 Score = 142 bits (357), Expect = 6e-37, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 20/167 (12%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN--G 1095 + + DI + +VNAAN L GGGV GA+++ A+ E A + Sbjct 4 ITLVQGDITRQ----SADAIVNAANSSLLGGGGVDGAIHRRGGPAILAECRRLRAGHLGK 59 Query 1096 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-LLKSAYENFNQ------HEVLLAP 1147 L G + + +L A+ +H VGP + ED LL S Y + + P Sbjct 60 GLPTGRAVATTAGDLDARWVIHTVGPVWSATEDRSGLLASCYRESLRTADELGARTVAFP 119 Query 1148 LLSAGIFGADPIHSLRVCVDTVR------TNVYLAVFDKNLYDKLVS 1188 +S G++ + R+ V+TV T + +FD Y+ + Sbjct 120 AISTGVYRWPMDDAARIAVETVATTKTSVTEIRFVLFDARAYEAFAA 166 >sp|Q9KHE2|Y189_STRGR Macro domain-containing protein in non 5'region OS=Streptomyces griseus OX=1911 PE=4 SV=1 Length=177 Score = 142 bits (358), Expect = 6e-37, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 21/177 (12%) Query 1031 YLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY 1090 ++ V + DI ++ V+VNAAN L GGGV GA+++ + + Sbjct 2 STSVSPVVRLVRGDITDQ----SVDVIVNAANSSLLGGGGVDGAIHRRGGPDILAACREL 57 Query 1091 IATN--GPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGED-IQLLKSAYE------NFNQ 1140 A+ L G + + L A+ +H VGP + +D LL S Y Sbjct 58 RASRYGKGLPTGQAVATTAGRLDARWIVHTVGPVFSGAQDRSALLASCYRESLRLAAELG 117 Query 1141 HEVLLAPLLSAGIFGADPIHSLRVCVDTV-------RTNVYLAVFDKNLYDKLVSSF 1190 + P +S GI+G R+ V TV V +FD + Y + Sbjct 118 ARSIAFPAISTGIYGWPMDDGARIAVRTVLAETVEPVEEVRFVLFDAHAYVEFEEVL 174 >sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=PA3693 PE=4 SV=1 Length=173 Score = 142 bits (357), Expect = 6e-37, Method: Composition-based stats. Identities = 44/171 (26%), Positives = 70/171 (41%), Gaps = 29/171 (17%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V + DI ++ +VNAAN L GGGV GA+++A + +G Sbjct 4 VRVWQGDIT----RLAVDAIVNAANSSLLGGGGVDGAIHRAAGAELVAAC---RLLHG-C 55 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPL 1148 K G + + G L A H +H VGP G+ + +LL S Y + P Sbjct 56 KTGEAKITRGFRLPAAHVIHTVGPVWRGGDNGEAELLASCYRRSLALAEQAGAASVAFPA 115 Query 1149 LSAGIFGADPIHSLRVCVDTV---------RTNVYLAVFDKNL---YDKLV 1187 +S GI+G + + V+ V + L FD ++ Y +L+ Sbjct 116 ISCGIYGYPLEQAAAIAVEEVCRQRPAHSSLEEIVLVAFDSSMAERYQRLL 166 >sp|Q93SX7|Y189_ACISE Macro domain-containing protein OS=Acinetobacter sp. (strain ED45-25) OX=194927 PE=4 SV=1 Length=183 Score = 141 bits (356), Expect = 1e-36, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 68/179 (38%), Gaps = 22/179 (12%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 1095 V++ ADI +VN+AN L GGG+ ++K M+ E G Sbjct 2 KKVHLIQADIT----AFAVHAIVNSANKSLLGGGGLDYVIHKKAGPLMKEECVRLNQEKG 57 Query 1096 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENFN------QHEVLLA 1146 G + V + NL AK+ +H VGP GE + QLL AY N + Sbjct 58 GCPTGQAEVTTAGNLPAKYLIHAVGPRWLDGEHNEPQLLCDAYSNALFKANEIHALTVSF 117 Query 1147 PLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSSFLEMKSE 1196 P +S G++G P + + + T+ + V+ + Y + + Sbjct 118 PCISTGVYGFPPQKAAEIAIGTILSMLPQYDHVAEVFFICREDENYLIYKNILSNIDDP 176 >sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=XCC3184 PE=4 SV=1 Length=179 Score = 139 bits (350), Expect = 7e-36, Method: Composition-based stats. Identities = 38/167 (23%), Positives = 66/167 (40%), Gaps = 24/167 (14%) Query 1037 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY--IATN 1094 + + DI + + V+VNAAN L GGGV GA+++A + + + Sbjct 2 RIEVWQGDITQ----LDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPG 57 Query 1095 GPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHE------VLL 1145 G + G +L A+H H VGP G + + L + Y + + Sbjct 58 VRCPTGEIRITDGFDLKARHIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIA 117 Query 1146 APLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLY 1183 P +S GI+G + R+ V R ++ L +++ Y Sbjct 118 FPAISCGIYGYPLYQAARIAVTETRDWQRSHKVPKHIVLVAYNEATY 164 >sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=XAC3343 PE=4 SV=2 Length=179 Score = 139 bits (350), Expect = 8e-36, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 66/167 (40%), Gaps = 24/167 (14%) Query 1037 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDY--IATN 1094 + + DI E + V+VNAAN L GGGV GA+++A + + + Sbjct 2 RIEVWQGDITE----LDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPQVRPG 57 Query 1095 GPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYENFNQHE------VLL 1145 G + G +L A+H H VGP G + + L + Y + + Sbjct 58 VRCPTGEIRITDGFDLKARHIFHTVGPVWRDGRHNEPEQLANCYWQSLKLAEQMMLHSIA 117 Query 1146 APLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLY 1183 P +S GI+G + R+ V R ++ L +++ Y Sbjct 118 FPAISCGIYGYPLHQAARIAVTETRDWQRSHKVPKHIVLVAYNEATY 164 >sp|Q9EYI6|Y189_STRNO Macro domain-containing protein in sno 5'region OS=Streptomyces nogalater OX=38314 PE=4 SV=1 Length=181 Score = 139 bits (349), Expect = 1e-35, Method: Composition-based stats. Identities = 46/165 (28%), Positives = 70/165 (42%), Gaps = 20/165 (12%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI-ATNGP 1096 + + DI + +VNAAN L GGGV GA+++ A+ E + G Sbjct 4 ITLVQGDITRQ----HADALVNAANSSLLGGGGVDGAIHRRGGPAILAECRALRASRYGE 59 Query 1097 -LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ-LLKSAYENFNQH------EVLLAP 1147 L G + + +L A+ +H VGP + ED LL S Y + + P Sbjct 60 GLPTGRAVATTAGDLDARWVIHTVGPVWSSTEDRSDLLASCYRESLRLAGELGARTVAFP 119 Query 1148 LLSAGIFGADPIHSLRVCVDTVRT------NVYLAVFDKNLYDKL 1186 LS G++ + R+ V+TVRT V +FD + YD Sbjct 120 ALSTGVYRWPMGDAARIAVETVRTTPTAVEEVRFVLFDTHAYDTF 164 >sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) OX=220668 GN=lp_3408 PE=4 SV=1 Length=172 Score = 138 bits (347), Expect = 1e-35, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 27/170 (16%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 + + + DI + + +VNAAN L GGGV GA+++A A+ +G Sbjct 4 IKVIHGDITK----MTVDAIVNAANTSLLGGGGVDGAIHRAAGPALLAAC---RPLHG-C 55 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLAPL 1148 G + + G L AK+ +H GP G+ ++QLL ++Y N N + + P Sbjct 56 ATGEAKITPGFRLPAKYVIHTPGPVWQGGQHNELQLLANSYRNSLNLAAENHCQTVAFPS 115 Query 1149 LSAGIFGADPIHSLRVCVDTVR----------TNVYLAVFDKNLYDKLVS 1188 +S G++ + + + T++ + + FD + + Sbjct 116 ISTGVYHFPLSIAAPLALKTLQATAQTTAHTVQTITIVCFDDQTQNVFST 165 >sp|Q8RHQ2|Y1951_FUSNN Uncharacterized protein FN1951 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=FN1951 PE=4 SV=1 Length=175 Score = 137 bits (346), Expect = 2e-35, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 75/171 (44%), Gaps = 25/171 (15%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 + + + DI + + +VNAAN L+ GGGV GA+ KA + + E + G Sbjct 6 IKLISGDITKIP---EVEAIVNAANSSLEMGGGVCGAIFKAAGSELAQECKEI----GGC 58 Query 1098 KVGGSCVLSGHNLA-KHCLHVVGPNVNKGE--DIQLLKSAY----ENFNQHEV--LLAPL 1148 G + + G+NL K+ +H VGP + GE + + L SAY + N+ + + P Sbjct 59 NTGEAVITKGYNLPNKYIIHTVGPRYSTGENREAERLASAYYESLKLANEKGIRRIAFPS 118 Query 1149 LSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSSF 1190 +S GI+ ++ + T ++ L V D+ Y + Sbjct 119 ISTGIYRFPVDEGAKIALTTAIKFLDKNPSSFDLILWVLDEKTYIVYKEKY 169 >sp|Q44020|YGB2_CUPNE Macro domain-containing protein in gbd 3'region OS=Cupriavidus necator OX=106590 PE=4 SV=1 Length=173 Score = 137 bits (345), Expect = 3e-35, Method: Composition-based stats. Identities = 43/166 (26%), Positives = 73/166 (44%), Gaps = 22/166 (13%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNG 1095 +++ + + DI +++ +VNAAN L GGGV GA++ A +A++ T G Sbjct 4 EHLQVVHGDIT----RMEVDAIVNAANSGLLGGGGVDGAIHGAGGSAIKEACRAIRDTQG 59 Query 1096 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVLLA 1146 G + + +G +L A + +H VGP G+ + +LL +AY N + L Sbjct 60 GCPTGEAVITTGGHLPAPYVIHAVGPVWQGGDQGEDELLANAYRNSIRLAAQHHLRRLAF 119 Query 1147 PLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLY 1183 P +S GI+ + + + VR V FD Y Sbjct 120 PNISTGIYAFPRERAADIAIAAVREALAAAPEIEQVTFVCFDDENY 165 >sp|Q6PAV8|MACD2_XENLA ADP-ribose glycohydrolase MACROD2 OS=Xenopus laevis OX=8355 GN=macrod2 PE=2 SV=1 Length=418 Score = 145 bits (365), Expect = 3e-35, Method: Composition-based stats. Identities = 55/280 (20%), Positives = 99/280 (35%), Gaps = 34/280 (12%) Query 979 WLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNV 1038 W ++ + +D + E++ L + V Sbjct 11 WKEEKERLLNMTRDERRKEYREYVSLDKIPSLMEELKSKASSDDESPEEIQVKNSLCEKV 70 Query 1039 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 1098 DI + ++ +VNAAN L GGGV G +++A+ ++ E + G + Sbjct 71 SFYKGDITQ----LEVDAIVNAANTSLLGGGGVDGCIHRASGPSLLAECREL----GGCE 122 Query 1099 VGGSCVLSGHNL-AKHCLHVVGPNVNKG---EDIQLLKSAYENF------NQHEVLLAPL 1148 G + + G+ L AK+ +H VGP Q L S Y + N + P Sbjct 123 TGQAKITCGYELPAKYVIHTVGPIARGHITPNHKQDLASCYNSSLTLATENDIRTIAFPC 182 Query 1149 LSAGIFGADPIHSLRVCVDTVRT----------NVYLAVFDK---NLYDKLVSSFLEMKS 1195 +S GI+G + V + TV+ V VF + +Y + ++ F Sbjct 183 ISTGIYGYPNEPAANVALTTVKEFLKKNRDKIDRVIFCVFLEVDFKIYKRKLNEFFPKDG 242 Query 1196 EKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKAC 1235 E + + + + TE KP K+ +K + Sbjct 243 GDDEEGEKGDSDEMKED---TEGKPQSPPMKKIKEKKEDT 279 >sp|Q97AU0|Y719_THEVO Uncharacterized protein TV0719 OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) OX=273116 GN=TV0719 PE=4 SV=1 Length=186 Score = 136 bits (342), Expect = 1e-34, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 69/169 (41%), Gaps = 22/169 (13%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP- 1096 + I DI + V +VNAAN L GGGV GA++ + +E + T P Sbjct 11 IEIIEGDITD----VNCEAIVNAANPSLMGGGGVDGAIHLKGGKTIDLECAELRRTKWPK 66 Query 1097 -LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ--LLKSAYEN-----FNQHEVLLAP 1147 L G + + SG L AK+ +H VGP E+ L S Y + + + + P Sbjct 67 GLPPGEADITSGGKLKAKYVIHTVGPIYRGQEEDAETLYSSYYRSLEIAKIHGIKCIAFP 126 Query 1148 LLSAGIFGADPIHSLRVCVDTVRT--------NVYLAVFDKNLYDKLVS 1188 +S GI+G + + + V + ++ + Y VS Sbjct 127 AISTGIYGYPFEEASVIALKAVTDFLSNKEGYIIKFVLYGQARYQTFVS 175 >sp|Q985D2|Y7730_RHILO Macro domain-containing protein mll7730 OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=mll7730 PE=4 SV=1 Length=176 Score = 134 bits (336), Expect = 6e-34, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 78/182 (43%), Gaps = 29/182 (16%) Query 1033 KLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 K D + I DI + + +VNAAN L GGGV GA+++A ++VE Sbjct 3 KALDRIRIHTGDITK----LDVDAIVNAANTLLLGGGGVDGAIHRAAGRELEVEC---RM 55 Query 1093 TNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG--EDIQLLKSAYE------NFNQHEV 1143 NG KVG + + G+ L A+H +H VGP G + +LL S Y N Sbjct 56 LNG-CKVGDAKITKGYKLPARHIIHTVGPVWQGGGKGEAELLASCYRSSLELAAANDCRS 114 Query 1144 LLAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDK---NLYDKLVSSFL 1191 + P +S G++ + + V TV V FD+ LY + V++ Sbjct 115 VAFPAISTGVYRYPKDEATGIAVGTVSMVIEEKAMPETVIFCCFDEQTAQLYLRAVAALR 174 Query 1192 EM 1193 + Sbjct 175 KG 176 >sp|Q8K4G6|MACD1_RAT ADP-ribose glycohydrolase MACROD1 (Fragment) OS=Rattus norvegicus OX=10116 GN=Macrod1 PE=2 SV=2 Length=258 Score = 134 bits (338), Expect = 3e-33, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 85/220 (39%), Gaps = 18/220 (8%) Query 962 FGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 1021 + + A + + DW + S E++ ++ P + + Sbjct 11 WAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCKDFIKLKKIPMWKETAKGLAG 70 Query 1022 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNN 1081 +E + +L + + + DI + ++ +VNAAN L GGGV G +++A + Sbjct 71 KVENPKYKKDKQLNEKISLFRGDITK----LEVDAIVNAANNSLLGGGGVDGCIHRAAGS 126 Query 1082 AMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNV---NKGEDIQLLKSAYEN 1137 + E + G + + G+ L AKH +H VGP L+S Y + Sbjct 127 LLTDECRTLQN----CETGKAKITCGYRLPAKHVIHTVGPIAVGQPTASQAAELRSCYLS 182 Query 1138 F------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 ++ + P +S G+FG + V + T+R Sbjct 183 SLDLLLEHRLRSVAFPCISTGVFGYPNEEAAEVVLATLRE 222 >sp|Q9BQ69|MACD1_HUMAN ADP-ribose glycohydrolase MACROD1 OS=Homo sapiens OX=9606 GN=MACROD1 PE=1 SV=2 Length=325 Score = 136 bits (341), Expect = 5e-33, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 86/220 (39%), Gaps = 18/220 (8%) Query 962 FGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 1021 + + A + + DW + S E++ ++ P + V Sbjct 78 WAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCKDFVRLKKIPTWKEMAKGVAV 137 Query 1022 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNN 1081 +E + +L + + + +DI + ++ +VNAAN L GGGV G +++A Sbjct 138 KVEEPRYKKDKQLNEKISLLRSDITK----LEVDAIVNAANSSLLGGGGVDGCIHRAAGP 193 Query 1082 AMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNV---NKGEDIQLLKSAYEN 1137 + E + K G + + G+ L AK+ +H VGP L+S Y + Sbjct 194 LLTDECRTLQS----CKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLS 249 Query 1138 F------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 ++ + P +S G+FG + + + T+R Sbjct 250 SLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLRE 289 >sp|Q922B1|MACD1_MOUSE ADP-ribose glycohydrolase MACROD1 OS=Mus musculus OX=10090 GN=Macrod1 PE=1 SV=2 Length=323 Score = 135 bits (340), Expect = 7e-33, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 85/220 (39%), Gaps = 18/220 (8%) Query 962 FGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 1021 + + A + + DW + S E++ ++ P + + Sbjct 76 WAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCKDFIKLKKIPTWKETAKGLAV 135 Query 1022 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNN 1081 +E + +L + + + DI + ++ +VNAAN L GGGV G +++A + Sbjct 136 KVEDPKYKKDKQLNEKISLYRGDITK----LEVDAIVNAANSSLLGGGGVDGCIHRAAGS 191 Query 1082 AMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNV---NKGEDIQLLKSAYEN 1137 + E + G + + G+ L AK+ +H VGP L+S Y + Sbjct 192 LLTDECRTLQN----CETGKAKITCGYRLPAKYVIHTVGPIAVGQPTASQAAELRSCYLS 247 Query 1138 F------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 ++ + P +S G+FG + V + ++R Sbjct 248 SLDLLLEHRLRSVAFPCISTGVFGYPNEEAAEVVLASLRE 287 >sp|A1Z1Q3|MACD2_HUMAN ADP-ribose glycohydrolase MACROD2 OS=Homo sapiens OX=9606 GN=MACROD2 PE=1 SV=2 Length=425 Score = 138 bits (347), Expect = 7e-33, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 97/228 (43%), Gaps = 21/228 (9%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 LT+ V + DI ++ +VNAAN L GGGV G +++A + E + Sbjct 66 KSLTEKVSLYRGDIT----LLEVDAIVNAANASLLGGGGVDGCIHRAAGPCLLAECRNL- 120 Query 1092 ATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNK---GEDIQLLKSAYENF------NQH 1141 NG G + + G++L AK+ +H VGP G + L + Y++ N Sbjct 121 --NG-CDTGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKEDLANCYKSSLKLVKENNI 177 Query 1142 EVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQ 1201 + P +S GI+G + + ++T++ +LA + + FLE+ K ++ Sbjct 178 RSVAFPCISTGIYGFPNEPAAVIALNTIKE--WLAKNHHEVDRIIFCVFLEVD-FKIYKK 234 Query 1202 KIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFL 1249 K+ E + E E ++ + K VEE+ ++ + Sbjct 235 KMNEFFSVDDNNEEEEDVEMKEDSDENGPEEKQSVEEMEEQSQDADGV 282 >sp|Q3UYG8|MACD2_MOUSE ADP-ribose glycohydrolase MACROD2 OS=Mus musculus OX=10090 GN=Macrod2 PE=1 SV=1 Length=475 Score = 139 bits (350), Expect = 8e-33, Method: Composition-based stats. Identities = 46/202 (23%), Positives = 89/202 (44%), Gaps = 27/202 (13%) Query 1003 QTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAAN 1062 + ++ + Q + E T ++ + L++ V + DI ++ +VNAAN Sbjct 44 KEEMKSKGQNDEENTQEAPQMKKS-------LSEKVSLYRGDIT----LLEVDAIVNAAN 92 Query 1063 VYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPN 1121 L GGGV G +++A + E + NG + G + + G++L AK+ +H VGP Sbjct 93 ASLLGGGGVDGCIHRAAGPCLLAECRNL---NG-CETGHAKITCGYDLPAKYVIHTVGPI 148 Query 1122 VNK---GEDIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 1172 G + L + Y++ N + P +S GI+G + + + T++ Sbjct 149 ARGHINGSHKEDLANCYQSSLKLVKENNLRSVAFPCISTGIYGFPNEPAAVIALGTIKE- 207 Query 1173 VYLAVFDKNLYDKLVSSFLEMK 1194 +LA + + + FLE+ Sbjct 208 -WLAKNHQEVDRIIFCVFLEVD 228 >sp|Q9RS39|Y2288_DEIRA Macro domain-containing protein DR_2288 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) OX=243230 GN=DR_2288 PE=4 SV=1 Length=170 Score = 129 bits (324), Expect = 2e-32, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 58/146 (40%), Gaps = 20/146 (14%) Query 1037 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 1096 + + DI + VV AAN L GGGV G +++A + I G Sbjct 2 PLELVQGDIAHQP----VDAVVTAANKQLMGGGGVDGVIHRAAGPRLLQA----IRPIGG 53 Query 1097 LKVGGSCVLSGHNL----AKHCLHVVGPNVNKGE--DIQLLKSAYENF------NQHEVL 1144 G + + +L K+ +H VGP G+ + +LL AY N + Sbjct 54 TPTGTAVITPAFDLERQGVKYVIHAVGPIWRGGQHGEAELLAGAYRESLRLGVENGCRSV 113 Query 1145 LAPLLSAGIFGADPIHSLRVCVDTVR 1170 P +S G++G + + + T++ Sbjct 114 AFPSISTGVYGYPLDRAAPIALATIQ 139 >sp|Q2KHU5|MACD1_BOVIN ADP-ribose glycohydrolase MACROD1 OS=Bos taurus OX=9913 GN=MACROD1 PE=2 SV=1 Length=325 Score = 134 bits (337), Expect = 2e-32, Method: Composition-based stats. Identities = 43/220 (20%), Positives = 83/220 (38%), Gaps = 18/220 (8%) Query 962 FGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQ 1021 + + A + + DW + S E++ ++ P + V Sbjct 78 WAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCRDFVRLKKIPTWKETAKGVTV 137 Query 1022 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNN 1081 +E + +L + + + DI + ++ +VNAAN L GGGV G +++A Sbjct 138 KVEEPKYKKDKQLNEKISLFRGDITK----LEVDAIVNAANSSLLGGGGVDGCIHRAAGP 193 Query 1082 AMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG---EDIQLLKSAYEN 1137 + E + G + + G+ L AK+ +H VGP + L+S Y + Sbjct 194 LLTDECRTLQN----CETGKAKITCGYRLPAKYVIHTVGPIAHGEPSASQAAELRSCYLS 249 Query 1138 F------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 ++ P +S G+FG + V + +R Sbjct 250 SLDLLLEHRLRSAAFPCISTGVFGYPNEAAAEVVLTALRE 289 >sp|Q460N5|PAR14_HUMAN Protein mono-ADP-ribosyltransferase PARP14 OS=Homo sapiens OX=9606 GN=PARP14 PE=1 SV=3 Length=1801 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 77/372 (21%), Positives = 138/372 (37%), Gaps = 34/372 (9%) Query 953 DDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS---EDNQTTTIQTIVEVQ 1009 ++ Q L G+ + L+ + ++ W + + G+ ++ Q+ ++ Sbjct 709 ENKQKGILLTGSKTEVLKAVDIVKQVWDSVCVKSVHTDKPGAKQFFQDKARFYQSEIKRL 768 Query 1010 PQLEMELTPVVQTIEVNSFSGYLKLTDNV-------YIKNADIVEEAKKVKPTVVVNAAN 1062 +EL E S +G + V ++ D ++ VVVNA+N Sbjct 769 FGCYIELQENEVMKEGGSPAGQKCFSRTVLAPGVVLIVQQGD----LARLPVDVVVNASN 824 Query 1063 VYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPN 1121 LKH GG+A AL+KA +Q + D + G L G + + L H +H VGP Sbjct 825 EDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPR 884 Query 1122 VNKGED---IQLLKSAYE------NFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 1172 + E + LL+ A + ++ + P +S+G+FG + V ++ N Sbjct 885 WSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKEN 944 Query 1173 VYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKI 1232 K L +L SEK VE AE K K + ++ Sbjct 945 FQF----KKDGHCLKEIYLVDVSEKTVE-AFAEAVKTVFKATLPDTAAPPGLPPAAAGPG 999 Query 1233 KACVEEVTTTLE---ETKFLTENLLLY-IDINGNLHPDSATLVSD-IDITFLKKDAPYIV 1287 K E+ + + + E + D+ N P L + + L+K P + Sbjct 1000 KTSWEKGSLVSPGGLQMLLVKEGVQNAKTDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQ 1059 Query 1288 GDVVQEGVLTAV 1299 ++ G AV Sbjct 1060 EELDTVGQGVAV 1071 Score = 67.5 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 35/219 (16%), Positives = 73/219 (33%), Gaps = 26/219 (12%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 + + DI +E + V+VN+ + GV+ A+ + ++ E Sbjct 1229 FQVASGDITKE----EADVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQQAQQRK-- 1282 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGA 1156 + G L K+ +HV+G N K +L+ + + + P + G Sbjct 1283 --NDYIITGGGFLRCKNIIHVIGGNDVKSSVSSVLQECEK--KNYSSICLPAIGTGNAKQ 1338 Query 1157 DPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAE 1205 P +D + V + +F + D ++ + + + Q+ Sbjct 1339 HPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLPQVLDVFYANMKKREGTQLSSQQSVM 1398 Query 1206 IPKEEVKPFITES----KPSVEQRKQDDKKIKACVEEVT 1240 F +S V ++K + + C E VT Sbjct 1399 SKLASFLGFSKQSPQKKNHLVLEKKTESATFRVCGENVT 1437 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 141/423 (33%), Gaps = 66/423 (16%) Query 1045 IVEEAKKVKPTVVVNAANVYL-KHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSC 1103 + E + K VVVN+ + L G ++ +L + +Q E D + + +G Sbjct 1019 VKEGVQNAKTDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDT-VGQGVAVSMGTVL 1077 Query 1104 VLSGHNL-AKHCLHVVGPNVNKGEDIQL------LKSA--YENFNQHEVLLAPLLSAGIF 1154 S NL ++ LHVV P G L ++ + + P + G Sbjct 1078 KTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNL 1137 Query 1155 GADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPF 1214 G + + V+ L FL S+ + Q ++ Sbjct 1138 GFPKNIFAELIIS----EVFKFSSKNQLKTLQEVHFLLHPSDHENIQAFSDEFARRANGN 1193 Query 1215 ITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSAT-LVSD 1273 + K + Q V + + E K + +++ +G++ + A +V+ Sbjct 1194 LVSDKIPKAKDTQG---FYGTVSSPDSGVYEMKIGS---IIFQVASGDITKEEADVIVNS 1247 Query 1274 IDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQG 1333 +F K V + +L AG E + ++YI T G G Sbjct 1248 TSNSFNLKAG-------VSKAILEC-------AGQNVERECSQQAQQRKNDYIIT--GGG 1291 Query 1334 ----------LNGYTVEEA-KTVLKKCKSAFY---ILPSI-ISNEKQE-----------I 1367 + G V+ + +VL++C+ Y LP+I N KQ I Sbjct 1292 FLRCKNIIHVIGGNDVKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAI 1351 Query 1368 LGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTS 1427 V + + + L V A + +R+ + Q+ V+ A F ++ Sbjct 1352 EDFVQKGSAQSVKKVKVVIFLPQVLDVFYANMK--KREGTQLSSQQSVMSKLASFLGFSK 1409 Query 1428 KTT 1430 ++ Sbjct 1410 QSP 1412 >sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=Ta1105 PE=4 SV=2 Length=196 Score = 126 bits (317), Expect = 3e-31, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 24/176 (14%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP- 1096 + ++ DI E +VNAAN L GGGV GA++ A + E P Sbjct 11 LAVEVGDITES----DAEAIVNAANSSLMGGGGVDGAIHSAAGPELNGELVKIRRERYPN 66 Query 1097 -LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGE--DIQLLKSAYEN----FNQHEV--LLA 1146 L G + + G+ L A H +H VGP G + +L +Y + + + + Sbjct 67 GLPPGEAVITRGYRLKASHIIHTVGPVWMGGRNGEDDVLYRSYRSCLDLAREFGIHDIAF 126 Query 1147 PLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSSFLEM 1193 P LS G +G + R+ + +V V + ++ + + ++ Sbjct 127 PALSTGAYGFPFDRAERIAIRSVIDFLKDESAGYTVRFVFYTEDQGKRFLFILSDL 182 >sp|Q2EMV9|PAR14_MOUSE Protein mono-ADP-ribosyltransferase PARP14 OS=Mus musculus OX=10090 GN=Parp14 PE=1 SV=3 Length=1817 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 66/291 (23%), Positives = 108/291 (37%), Gaps = 31/291 (11%) Query 1034 LTDNVYIKNADIV---------EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQ 1084 + + DI E+ + VVVNAAN LKH G+A AL+KA +Q Sbjct 798 INEQKCHLQRDIAPGVKLFVLEEDLSRFPVDVVVNAANENLKHISGLAQALSKAAGPELQ 857 Query 1085 VESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG---EDIQLLKSAYENF-- 1138 E D + G + G + + L H +H VGP E + LLK Sbjct 858 TECDQIVKEGGVVLPGNAVISKAGKLPCHHVIHAVGPRWKGDKVLECVSLLKKVVRQSLS 917 Query 1139 ----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMK 1194 ++ + P +SAGIF L +CV + + + K L +L Sbjct 918 LAEEHRCRSIAMPAVSAGIFDFP----LELCVANIVSAIKEHFQHKRDTHTLKKIYLVGL 973 Query 1195 SEKQVEQKIAEIPKEEVKPFITES------KPSVEQRKQDDKKIKACVEEVTTTLEETKF 1248 +V + AE K K ++ + K V K K+ V + + Sbjct 974 -PAKVARAFAEAVKTTYKDSLSHTAFPSSLKALVPLGKTPQKQGSLLVSPEGLRIRLVEE 1032 Query 1249 LTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAV 1299 +N + +N ++ PD + FL+K P + ++ + G +V Sbjct 1033 GVQNATTHAIVN-SISPDLKLNKGPLSQAFLEKAGPKLQEELTRSGQGVSV 1082 Score = 64.4 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 105/330 (32%), Gaps = 55/330 (17%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 + +I++E V+VN+ + GV+ A+ + ++ E + Sbjct 1240 FQVATGNIIKEV----ADVIVNSTTLTFDLKSGVSKAILEGAGQNVEQECSLLAKQSN-- 1293 Query 1098 KVGGSCVLSGHNL--AKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFG 1155 +++G L K+ +HVVG N K +L+ + + + P + G Sbjct 1294 ---HGYIVTGGGLLQCKNIIHVVGGNDVKKSVSCVLEECEQ--RNYSSICLPAIGTGNAQ 1348 Query 1156 ADPIHSLRVCVDTVRT-----------NVYLAVFDKNLYDKLVSSFLEMKSE-------- 1196 DP + +D + V + +F ++ + E + Sbjct 1349 QDPNVVAKAIIDAIEEFVQKKSVQAVKRVKVVIFQPHILQFFYDNMKEREGSPAPPKQSP 1408 Query 1197 -KQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKAC---VEEVTTTLEETKFLTEN 1252 KQ K + V ++K + + C V+ V T+ K L Sbjct 1409 AKQSVMSKIASFLGFPKQASPKKNTLVLEKKIEHTVFQVCGSGVDSVNKTISWLKELITK 1468 Query 1253 LLLYIDINGNLHPDSATLVSDIDITFLKKDAPYI------------VGDVVQEGVLTAVV 1300 L + + VSD D+ +K + G+ V+ Sbjct 1469 EQL-------SYTNDDECVSDFDMEEYEKLNEIQKELNITIEMNQKKTSIQVSGISRDVI 1521 Query 1301 IPTKKAGGTTEMLAKALRKVPTDNYITTYP 1330 + G + + A K +YI+TY Sbjct 1522 KARDEIEGMIKSIRLAKEKESQADYISTYV 1551 Score = 57.1 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 107/328 (33%), Gaps = 43/328 (13%) Query 1015 ELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLK-HGGGVAG 1073 L +V + G L ++ ++ + E + +VN+ + LK + G ++ Sbjct 1001 SLKALVPLGKTPQKQGSLLVSPE-GLRIRLVEEGVQNATTHAIVNSISPDLKLNKGPLSQ 1059 Query 1074 ALNKATNNAMQVESDDYIATNGP-LKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLL 1131 A + +Q E + G + VG SG NL ++H HVV P L Sbjct 1060 AFLEKAGPKLQEELT--RSGQGVSVDVGTILQTSGCNLNSRHVFHVVPPPWKSNNSAWSL 1117 Query 1132 KSAYENFNQH---------EVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL 1182 K + + P + G ++ + V + ++ Sbjct 1118 KIMKNIIRDCLKTTENLSLQSIAFPAIGTGNLRFPKPEFAKLIISEVLK---FSSRNQLK 1174 Query 1183 YDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKK-IKACVEEVTT 1241 + V FL + + Q + + PS + K +D + I + T Sbjct 1175 TLQEV-QFLLHPKDHENIQAFS-----DEFDKRNNGDPSDKNPKAEDTQGIYGSLSSPTL 1228 Query 1242 TLEETKFLTENLLLYIDINGNLHPDSAT-LVSDIDITFLKKDAPYIVGDVVQEGVLTAVV 1300 + E +L+ GN+ + A +V+ +TF K V + EG Sbjct 1229 GMHEMNI---GPILFQVATGNIIKEVADVIVNSTTLTFDLKSG---VSKAILEG------ 1276 Query 1301 IPTKKAGGTTEMLAKALRKVPTDNYITT 1328 AG E L K YI T Sbjct 1277 -----AGQNVEQECSLLAKQSNHGYIVT 1299 >sp|Q8CAS9|PARP9_MOUSE Protein mono-ADP-ribosyltransferase PARP9 OS=Mus musculus OX=10090 GN=Parp9 PE=1 SV=2 Length=866 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 71/171 (42%), Gaps = 17/171 (10%) Query 1047 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 1106 ++ + VVNAAN L HG G+AG+L K +Q ES IA G + VGG + Sbjct 127 DDLTRHVVDAVVNAANENLLHGSGLAGSLVKTGGFEIQEESKRIIANVGKISVGGIAITG 186 Query 1107 GHNLAKH-CLHVVGPNV---NKGEDIQLLKSAYENFNQH--------EVLLAPLLSAGIF 1154 L H +H VGP N I+LLK A N + + + P LS+GIF Sbjct 187 AGRLPCHLIIHAVGPRWTVTNSQTAIELLKFAIRNILDYVTKYDLRIKTVAIPALSSGIF 246 Query 1155 GADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAE 1205 L +C + + L DK ++ L L + +E Sbjct 247 QFP----LDLCTSIILETIRLYFQDKQMFGNLREIHL-VSNEDPTVASFKS 292 Score = 41.3 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 59/174 (34%), Gaps = 24/174 (14%) Query 1055 TVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKH 1113 V+VN+ + G VA ++ + M+ E D + +V V G L ++ Sbjct 339 DVIVNSGYMQDFKSGRVAQSILRQAGVEMEKELDKVNLSTDYQEV---WVTKGFKLSCQY 395 Query 1114 CLHVVGPNVNKGEDIQLLKSAYENFNQH------EVLLAPLLSAGIFGADPIHSLRVCVD 1167 HV ++ Q+LK A ++ + + P L G+ + ++ + Sbjct 396 VFHVA--WHSQINKYQILKDAMKSCLEKCLKPDINSISFPALGTGLMDLKKSTAAQIMFE 453 Query 1168 TV----------RTNVYLAVF--DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKE 1209 V V + +F D Y + + +E + + + Sbjct 454 EVFAFAKEHKEKTLTVKIVIFPVDVETYKIFYAEMTKRSNELNLSGNSGALALQ 507 >sp|P0C6F3|R1A_BEV Replicase polyprotein 1a OS=Berne virus OX=11156 GN=1a PE=1 SV=1 Length=4569 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 56/237 (24%), Positives = 94/237 (40%), Gaps = 24/237 (10%) Query 985 QQTVGQQDGSEDNQTTTIQTIVEVQPQ-LEMELTPVVQT-------IEVNSFSGYLKLTD 1036 V ++ D + + V+ + E L+P + + + Sbjct 1631 TVKVNAKNEKLDIGSQCERVFVDYDVKKNEWTLSPEEGEDSDDNLDLPFEQYYEFKIGQT 1690 Query 1037 NVYIKNADIVEEAKKVK----PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 NV + D + +K VVN AN LKHGGG+A ++ +Q S++YI Sbjct 1691 NVVLVQDDFKSVFEFLKSEQGVDYVVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYIT 1750 Query 1093 TNGPLKVGGSCVLSGHNLAK--HCLHVVGPNVNKGEDIQLLKSAYENF----NQHEVLLA 1146 N + V + G L K + +H VGP V+ G+ Q L A+ + +L Sbjct 1751 KNKTVPVTKAIKSPGFQLGKKVNIIHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILT 1810 Query 1147 PLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI 1203 +LS GIFG S + V A DK+L +V++ +E ++ K+ Sbjct 1811 SMLSTGIFGCTVNDSFNTFLSNV------ARLDKSLVVFVVTNMVEQYNQAFAVIKM 1861 Score = 42.8 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 39/246 (16%), Positives = 82/246 (33%), Gaps = 41/246 (17%) Query 3028 TNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLM 3087 + +P + + + +++ ++ + + +Y+ + F + + + Sbjct 3055 FEIISPYV--FVFIVVIFTVIFLILIRLYIVMYSYFKVFTYVVFKLLFVNIIMVLFVVCL 3112 Query 3088 SFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIIC 3147 V + V + + LYL F + + + ++ M V +W+ + + Sbjct 3113 PPLVPGVVFVLALWLCDSVMFLLYLAFLSLFILPWFYVLFFLFMVGGFVFWWMMRSADVV 3172 Query 3148 ISTKHFYWFFSNYLKRRVVFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNR 3206 + +G++F TFE+ + C F LN + + +LL + Sbjct 3173 ----------------HLTTDGLTFNGTFEQISKCVFPLNP----LIVNRMLLDCQMSHS 3212 Query 3207 YLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGF 3266 L +K K G LA + +G YQP S QS F Sbjct 3213 DLVEKSKLKTTEGK-------------LANEMMKVFMTGETSYYQPSNFSF-----QSVF 3254 Query 3267 RKMAFP 3272 K P Sbjct 3255 SKATSP 3260 >sp|Q8IXQ6|PARP9_HUMAN Protein mono-ADP-ribosyltransferase PARP9 OS=Homo sapiens OX=9606 GN=PARP9 PE=1 SV=2 Length=854 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 93/266 (35%), Gaps = 23/266 (9%) Query 956 QGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQ---L 1012 Q P + P + E L ++ + + + EV Sbjct 32 QIFPQWRKGNTEECLPYKCSETGALGENYSWQIPINHNDFKILKNNERQLCEVLQNKFGC 91 Query 1013 EMELTPVVQTIEVNSFSGYLKL-TDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGV 1071 L VQ S + K+ T + + ++ VVNAAN L HGGG+ Sbjct 92 ISTLVSPVQEGNSKSLQVFRKMLTPRIELSVWK--DDLTTHAVDAVVNAANEDLLHGGGL 149 Query 1072 AGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGED--- 1127 A AL KA +Q ES ++A G + G V L K +H VGP + + Sbjct 150 ALALVKAGGFEIQEESKQFVARYGKVSAGEIAVTGAGRLPCKQIIHAVGPRWMEWDKQGC 209 Query 1128 IQLLKSAYENFNQH--------EVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFD 1179 L+ A + + + + P LS+GIF L +C T+ + +++ Sbjct 210 TGKLQRAIVSILNYVIYKNTHIKTVAIPALSSGIFQFP----LNLCTKTIVETIRVSLQG 265 Query 1180 KNLYDKLVSSFLEMKSEKQVEQKIAE 1205 K + L L + +E Sbjct 266 KPMMSNLKEIHL-VSNEDPTVAAFKA 290 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 39/221 (18%), Positives = 67/221 (30%), Gaps = 38/221 (17%) Query 1022 TIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNN 1081 SF+ + + I I + V+VN+ N + G VA ++ + Sbjct 303 QETTPSFNAMVVNNLTLQIVQGHI----EWQTADVIVNSVNPHDITVGPVAKSILQQAGV 358 Query 1082 AMQVE-----SDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVV------GPNVNKGEDIQ 1129 M+ E + + + L V G NL K+ HV+ P + K + Sbjct 359 EMKSEFLATKAKQFQRSQLVL------VTKGFNLFCKYIYHVLWHSEFPKPQILKHAMKE 412 Query 1130 LLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT----------NVYLAVF- 1178 L+ E + P L G + + D V T V +F Sbjct 413 CLEKCIEQ--NITSISFPALGTGNMEIKKETAAEILFDEVLTFAKDHVKHQLTVKFVIFP 470 Query 1179 -DKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITES 1218 D +Y S K K + +P+ + Sbjct 471 TDLEIYKAFSSEM--AKRSKMLSLNNYSVPQSTREEKRENG 509 >sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus OX=11156 GN=rep PE=1 SV=1 Length=6857 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 56/237 (24%), Positives = 94/237 (40%), Gaps = 24/237 (10%) Query 985 QQTVGQQDGSEDNQTTTIQTIVEVQPQ-LEMELTPVVQT-------IEVNSFSGYLKLTD 1036 V ++ D + + V+ + E L+P + + + Sbjct 1631 TVKVNAKNEKLDIGSQCERVFVDYDVKKNEWTLSPEEGEDSDDNLDLPFEQYYEFKIGQT 1690 Query 1037 NVYIKNADIVEEAKKVK----PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIA 1092 NV + D + +K VVN AN LKHGGG+A ++ +Q S++YI Sbjct 1691 NVVLVQDDFKSVFEFLKSEQGVDYVVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYIT 1750 Query 1093 TNGPLKVGGSCVLSGHNLAK--HCLHVVGPNVNKGEDIQLLKSAYENF----NQHEVLLA 1146 N + V + G L K + +H VGP V+ G+ Q L A+ + +L Sbjct 1751 KNKTVPVTKAIKSPGFQLGKKVNIIHAVGPRVSDGDVFQKLDQAWRSVFDLCEDQHTILT 1810 Query 1147 PLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI 1203 +LS GIFG S + V A DK+L +V++ +E ++ K+ Sbjct 1811 SMLSTGIFGCTVNDSFNTFLSNV------ARLDKSLVVFVVTNMVEQYNQAFAVIKM 1861 Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 39/246 (16%), Positives = 82/246 (33%), Gaps = 41/246 (17%) Query 3028 TNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLM 3087 + +P + + + +++ ++ + + +Y+ + F + + + Sbjct 3055 FEIISPYV--FVFIVVIFTVIFLILIRLYIVMYSYFKVFTYVVFKLLFVNIIMVLFVVCL 3112 Query 3088 SFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIIC 3147 V + V + + LYL F + + + ++ M V +W+ + + Sbjct 3113 PPLVPGVVFVLALWLCDSVMFLLYLAFLSLFILPWFYVLFFLFMVGGFVFWWMMRSADVV 3172 Query 3148 ISTKHFYWFFSNYLKRRVVFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNR 3206 + +G++F TFE+ + C F LN + + +LL + Sbjct 3173 ----------------HLTTDGLTFNGTFEQISKCVFPLNP----LIVNRMLLDCQMSHS 3212 Query 3207 YLALYNKYKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGF 3266 L +K K G LA + +G YQP S QS F Sbjct 3213 DLVEKSKLKTTEGK-------------LANEMMKVFMTGETSYYQPSNFSF-----QSVF 3254 Query 3267 RKMAFP 3272 K P Sbjct 3255 SKATSP 3260 >sp|Q8BCR0|POLN_RUBVN Non-structural polyprotein p200 OS=Rubella virus (strain RN-UK86) OX=376267 PE=3 SV=1 Length=2116 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 47/198 (24%), Positives = 71/198 (36%), Gaps = 18/198 (9%) Query 987 TVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIV 1046 S + +EV + T + + Y + V+++ DI+ Sbjct 768 GDPDSPTSAEPADRARHAELEVVYEPSGPPTSTKADPDSDIVESYARAAGPVHLRVRDIM 827 Query 1047 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 1106 + K VVVNAAN L G GV GA+ A+ + P G + Sbjct 828 DPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL----APCPTGEAVATP 881 Query 1107 GHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIF 1154 GH H +H V P + E LL+ AY + + + PLL AG++ Sbjct 882 GHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVY 941 Query 1155 GADPIHSLRVCVDTVRTN 1172 G SLR + RT Sbjct 942 GWSAAESLRAALAATRTE 959 >sp|P13889|POLN_RUBVT Non-structural polyprotein p200 OS=Rubella virus (strain Therien) OX=11045 PE=3 SV=5 Length=2116 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 47/183 (26%), Positives = 69/183 (38%), Gaps = 20/183 (11%) Query 1004 TIVEVQPQLEMELTPVVQTIEVNS--FSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAA 1061 E++ E P + +S Y + V+++ DI++ K VVVNAA Sbjct 783 RDAELEVACEPSGPPTSTRADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAA 840 Query 1062 NVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGP 1120 N L G GV GA+ A+ P G + GH H +H V P Sbjct 841 NEGLLAGSGVCGAIFANATAALAANCRRL----APCPTGEAVATPGHGCGYTHIIHAVAP 896 Query 1121 NVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTV 1169 + E LL+ AY + + + PLL AG++G SLR + Sbjct 897 RRPRDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVYGWSAAESLRAALAAT 956 Query 1170 RTN 1172 RT Sbjct 957 RTE 959 >sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 OX=360393 GN=1a PE=3 SV=1 Length=4445 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 52/252 (21%), Positives = 89/252 (35%), Gaps = 18/252 (7%) Query 929 EDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSA-ALQPEEEQEEDWLDDDSQQT 987 +E + + +E T + L + L + + E + LD S Sbjct 1543 CEEFDSAYTLQTISDEVSFETSTSPELVACVLAYAIGYELCLTVKTDGECESLDVGSSLE 1602 Query 988 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 1047 D + T ++ ++EL N + + +V + D Sbjct 1603 QVYVDYDVSKNVWDLSTHLQDDSSDDLEL-------PFNQYYEFKVGRASVVLVQDDFKS 1655 Query 1048 EAKKVK----PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSC 1103 +K VVN AN LKHGGG+A ++ + S++YI L V + Sbjct 1656 VYDFLKSEQGVDYVVNPANNQLKHGGGIAKVISCMCGPKLTSWSNNYIKQYKKLGVTCAI 1715 Query 1104 VLSGHNLAK--HCLHVVGPNVNKGEDIQLLKS----AYENFNQHEVLLAPLLSAGIFGAD 1157 G L K +HVVGP + + L++ ++N +L +LS GIFG Sbjct 1716 RSPGFQLGKGVQIIHVVGPKSADSDVVNKLEASWRSVFQNVKPDTTVLTSMLSTGIFGCS 1775 Query 1158 PIHSLRVCVDTV 1169 S + + Sbjct 1776 VTDSATTLLSNL 1787 Score = 40.1 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 84/235 (36%), Gaps = 47/235 (20%) Query 3047 IVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLF-LMSFTVLCLTPVYSFLPGVY 3105 +V I IV L ++ F +++VV + +M V+CL P+ + V Sbjct 2944 VVLVAIFTIVFLFLLRMYIVMYSYFKVFTYVVFKLLFVNTVMVLFVVCLPPLVPGVVFVL 3003 Query 3106 S-------VIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFS 3158 + V LYL + + + ++++ V +W+ + + T Sbjct 3004 ALWLCDSVVFLLYLAVLSLFILPWFYVMLFVLIVGGFVFWWMMKSSDVVHLTP------- 3056 Query 3159 NYLKRRVVFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYF 3217 +G++F TFE+ + C F LN + + +LL + L +K K Sbjct 3057 ---------DGLTFNGTFEQVSKCVFPLNP----LIVNRLLLDCRMSHSDLVEKSKLKTT 3103 Query 3218 SGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFP 3272 G LA + +G YQP S QS F K+ P Sbjct 3104 EGK-------------LATEMMKVFMTGETAYYQPSNFSF-----QSVFSKVVSP 3140 >sp|P27282|POLN_EEVVT Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain Trinidad donkey) OX=11038 PE=1 SV=3 Length=2493 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 103/272 (38%), Gaps = 40/272 (15%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + ++ DI + V++NAAN + GGGV GAL K + ++ Sbjct 1329 CAPSYHVVRGDIATATEG----VIINAANSKGQPGGGVCGALYKKFPESFDLQ------- 1377 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 1144 P++VG + ++ G AKH +H VGPN NK +++ L AYE N N ++ + Sbjct 1378 --PIEVGKARLVKG--AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSV 1433 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS GIF + L +DT +V + DK L + + + Sbjct 1434 AIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEA---VARREA 1490 Query 1199 VEQKIAEIPKEEVKPF----ITESKPSVEQRKQDDKKIKACVE--EVTTTLEETKFLTEN 1252 VE+ +P K S+ RK E T + K + E Sbjct 1491 VEEICISDDSSVTEPDAELVRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDIAE- 1549 Query 1253 LLLYIDINGNLHPDSATLVSDIDITFLKKDAP 1284 + + + + ++ ++ P Sbjct 1550 INAMWPVATEANEQVCMYILGESMSSIRSKCP 1581 >sp|P36328|POLN_EEVVP Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain P676) OX=36385 PE=1 SV=2 Length=2493 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 103/272 (38%), Gaps = 40/272 (15%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + ++ DI + V++NAAN + GGGV GAL K + ++ Sbjct 1329 CAPSYHVVRGDIATATEG----VIINAANSKGQPGGGVCGALYKKFPESFDLQ------- 1377 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 1144 P++VG + ++ G AKH +H VGPN NK +++ L AYE N N ++ + Sbjct 1378 --PIEVGKARLVKG--AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSV 1433 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS GIF + L +DT +V + DK L + + + Sbjct 1434 AIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEA---VARREA 1490 Query 1199 VEQKIAEIPKEEVKPF----ITESKPSVEQRKQDDKKIKACVE--EVTTTLEETKFLTEN 1252 VE+ +P K S+ RK E T + K + E Sbjct 1491 VEEICISDDSSVTEPDAELVRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDIAE- 1549 Query 1253 LLLYIDINGNLHPDSATLVSDIDITFLKKDAP 1284 + + + + ++ ++ P Sbjct 1550 INAMWPVATEANEQVCMYILGESMSSIRSKCP 1581 >sp|P36327|POLN_EEVV3 Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain 3880) OX=36382 PE=3 SV=3 Length=2485 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 62/272 (23%), Positives = 103/272 (38%), Gaps = 40/272 (15%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + ++ DI + V++NAAN + GGGV GAL K + ++ Sbjct 1329 CAPSYHVVRGDIATATEG----VIINAANSKGQPGGGVCGALYKKFPESFDLQ------- 1377 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 1144 P++VG + ++ G AKH +H VGPN NK +I+ L AYE N N ++ + Sbjct 1378 --PIEVGKARLVKG--AAKHIIHAVGPNFNKVSEIEGDKQLAEAYESIAKIVNDNNYKSV 1433 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS GIF + L +DT +V + DK L + + + Sbjct 1434 AIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEA---VARREA 1490 Query 1199 VEQKIAEIPKEEVKPF----ITESKPSVEQRKQDDKKIKACVE--EVTTTLEETKFLTEN 1252 VE+ +P K S+ RK E T + K + E Sbjct 1491 VEEICISDDSSVTEPDAELVRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDIAE- 1549 Query 1253 LLLYIDINGNLHPDSATLVSDIDITFLKKDAP 1284 + + + + ++ ++ P Sbjct 1550 INAMWPVATEANEQVCMYILGESMSSIRSKCP 1581 >sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 OX=360393 GN=rep PE=2 SV=1 Length=6733 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 52/252 (21%), Positives = 89/252 (35%), Gaps = 18/252 (7%) Query 929 EDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSA-ALQPEEEQEEDWLDDDSQQT 987 +E + + +E T + L + L + + E + LD S Sbjct 1543 CEEFDSAYTLQTISDEVSFETSTSPELVACVLAYAIGYELCLTVKTDGECESLDVGSSLE 1602 Query 988 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 1047 D + T ++ ++EL N + + +V + D Sbjct 1603 QVYVDYDVSKNVWDLSTHLQDDSSDDLEL-------PFNQYYEFKVGRASVVLVQDDFKS 1655 Query 1048 EAKKVK----PTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSC 1103 +K VVN AN LKHGGG+A ++ + S++YI L V + Sbjct 1656 VYDFLKSEQGVDYVVNPANNQLKHGGGIAKVISCMCGPKLTSWSNNYIKQYKKLGVTCAI 1715 Query 1104 VLSGHNLAK--HCLHVVGPNVNKGEDIQLLKS----AYENFNQHEVLLAPLLSAGIFGAD 1157 G L K +HVVGP + + L++ ++N +L +LS GIFG Sbjct 1716 RSPGFQLGKGVQIIHVVGPKSADSDVVNKLEASWRSVFQNVKPDTTVLTSMLSTGIFGCS 1775 Query 1158 PIHSLRVCVDTV 1169 S + + Sbjct 1776 VTDSATTLLSNL 1787 Score = 40.1 bits (92), Expect = 0.78, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 84/235 (36%), Gaps = 47/235 (20%) Query 3047 IVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLF-LMSFTVLCLTPVYSFLPGVY 3105 +V I IV L ++ F +++VV + +M V+CL P+ + V Sbjct 2944 VVLVAIFTIVFLFLLRMYIVMYSYFKVFTYVVFKLLFVNTVMVLFVVCLPPLVPGVVFVL 3003 Query 3106 S-------VIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFS 3158 + V LYL + + + ++++ V +W+ + + T Sbjct 3004 ALWLCDSVVFLLYLAVLSLFILPWFYVMLFVLIVGGFVFWWMMKSSDVVHLTP------- 3056 Query 3159 NYLKRRVVFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYF 3217 +G++F TFE+ + C F LN + + +LL + L +K K Sbjct 3057 ---------DGLTFNGTFEQVSKCVFPLNP----LIVNRLLLDCRMSHSDLVEKSKLKTT 3103 Query 3218 SGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFP 3272 G LA + +G YQP S QS F K+ P Sbjct 3104 EGK-------------LATEMMKVFMTGETAYYQPSNFSF-----QSVFSKVVSP 3140 >sp|Q9V0Y3|Y656_PYRAB Uncharacterized protein PYRAB06560 OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=PYRAB06560 PE=4 SV=2 Length=183 Score = 112 bits (280), Expect = 2e-26, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 72/181 (40%), Gaps = 32/181 (18%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD----DYIAT 1093 + + DI + K +VNAAN YL+HGGGVA A+ KA + + + Sbjct 2 FRVVHGDIT----RFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQ 57 Query 1094 NGP--LKVGGSCVLSGHNLA----KHCLHVVGPNVN---KGEDIQLLKSAYENFNQH--- 1141 G ++ G V NLA K+ +H VGP + + L+ A + Sbjct 58 IGRDWIEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADE 117 Query 1142 ---EVLLAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLYDKLVSS 1189 + P +SAGI+G ++ V T+VYL ++ + Y+ + Sbjct 118 LGVRSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEVALKV 177 Query 1190 F 1190 Sbjct 178 L 178 >sp|Q8V294|POLN_EEVVC Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain CPA201) OX=376610 PE=3 SV=3 Length=2497 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 56/269 (21%), Positives = 104/269 (39%), Gaps = 34/269 (13%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + ++ DI + V+VNAAN + G GV GAL + + ++ Sbjct 1329 CAPSYHVVRGDIATATEG----VIVNAANSKGQPGSGVCGALYRKYPESFDLQ------- 1377 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 1144 P++VG + ++ G+ +KH +H VGPN NK +++ L AYE N N + + Sbjct 1378 --PIEVGKARLVKGN--SKHLIHAVGPNFNKVSEVEGDKQLAEAYESIARIINDNNYRSV 1433 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS GIF + L +DT +V + DK L ++ ++ Sbjct 1434 AIPLLSTGIFAGNKDRLMQSLNHLLTALDTTDADVAIYCRDKKWEVTLKEVVARREAVEE 1493 Query 1199 V-EQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVE--EVTTTLEETKFLTENLLL 1255 + + + + + + + K S+ RK E T + K + E + Sbjct 1494 ICISEDSSVAEPDAELVRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDMAE-INA 1552 Query 1256 YIDINGNLHPDSATLVSDIDITFLKKDAP 1284 + + ++ ++ P Sbjct 1553 MWPAATEANEQVCLYILGESMSSIRSKCP 1581 >sp|Q9WJC7|POLN_EEVVM Polyprotein P1234 OS=Venezuelan equine encephalitis virus (strain Mena II) OX=36384 PE=3 SV=3 Length=2499 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 50/211 (24%), Positives = 89/211 (42%), Gaps = 31/211 (15%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + ++ DI + V+VNAAN + G GV GAL + + ++ Sbjct 1329 CAPSYHVVRGDIATATEG----VIVNAANSKGQPGSGVCGALYRKYPESFDLQ------- 1377 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYE------NFNQHEVL 1144 P++VG + ++ G +KH +H VGPN +K +++ L AYE N N + + Sbjct 1378 --PIEVGKARLVKGS--SKHIIHAVGPNFSKVSEVEGDKQLAEAYESIAKIINDNNYRSV 1433 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS GIF + L +DT +V + DK L ++ ++ Sbjct 1434 AIPLLSTGIFAGNKDRLMQSLNHLLTALDTTDADVAIYCRDKKWEVTLKEVVARREAVEE 1493 Query 1199 V-EQKIAEIPKEEVKPFITESKPSVEQRKQD 1228 + + + + + + + K S+ RK Sbjct 1494 ICISEDSSVAEPDAELVRVHPKSSLAGRKGY 1524 >sp|O59182|Y1513_PYRHO Uncharacterized protein PH1513 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=PH1513 PE=4 SV=1 Length=190 Score = 111 bits (278), Expect = 4e-26, Method: Composition-based stats. Identities = 43/189 (23%), Positives = 74/189 (39%), Gaps = 32/189 (17%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD----DYIAT 1093 I DI + + +VNAAN YL+HGGGVA A+ KA + + + + Sbjct 5 FKIVRGDITK----FRAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYTRISKEEMRRQ 60 Query 1094 NGP--LKVGGSCVLSGHNL----AKHCLHVVGPNVNK---GEDIQLLKSAYENFNQH--- 1141 G ++ G V L K+ +H VGP + + LK A + Sbjct 61 LGKDWIEHGEVVVTPPMKLKENGVKYVIHTVGPYCGGVWSKDKEEKLKLAILGALKKADE 120 Query 1142 ---EVLLAPLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSS 1189 + + P +SAGI+G +R + V+ VYL ++ + Y + + Sbjct 121 LGVKSIAFPAISAGIYGCPLKEVVRTFKEVVKEFLKVANHVKEVYLVLYSERDYKLALET 180 Query 1190 FLEMKSEKQ 1198 +++ Sbjct 181 IGLGDNDES 189 >sp|Q6X2U2|POLN_RUBVC Non-structural polyprotein p200 OS=Rubella virus (strain BRDII) OX=376263 PE=3 SV=1 Length=2116 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 41/181 (23%), Positives = 66/181 (36%), Gaps = 18/181 (10%) Query 988 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 1047 S + EV + TP + + Y + V+++ +I++ Sbjct 769 DPASPISAEPADRARDAEPEVACEPGGPATPARADPDSDIVESYARAAGPVHLRVRNIMD 828 Query 1048 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 1107 K VVVNAAN L G GV GA+ + ++ + P G + G Sbjct 829 PPPGCK--VVVNAANEGLLAGSGVCGAIFASAAASLAEDCRRL----APCPTGEAVATPG 882 Query 1108 HNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFG 1155 H H +H V P + + LL+ AY + + + PLL AGI+G Sbjct 883 HGCGYAHIIHAVAPRRPQDPAALEQSEALLERAYRSIVALAAARRWTCVACPLLGAGIYG 942 Query 1156 A 1156 Sbjct 943 W 943 >sp|Q99IE5|POLN_RUBVV Non-structural polyprotein p200 OS=Rubella virus (strain TO-336) OX=376264 PE=3 SV=1 Length=2116 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 18/169 (11%) Query 1005 IVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVY 1064 +EV + TP + + Y + V+++ DI++ K VVVNAAN Sbjct 786 ELEVAYEPSDPPTPTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEG 843 Query 1065 LKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVN 1123 L G GV GA+ A+ + P G + GH H +H V P Sbjct 844 LLAGSGVCGAIFANATAALAADCRRL----APCPTGEAVATPGHGCGYTHIIHAVAPRRP 899 Query 1124 KG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHS 1161 + E LL+ AY + + + PLL AG++G S Sbjct 900 RDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVYGWSAAES 948 >sp|Q99IE7|POLN_RUBVO Non-structural polyprotein p200 OS=Rubella virus (strain TO-336 vaccine) OX=376265 PE=3 SV=1 Length=2116 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 18/169 (11%) Query 1005 IVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVY 1064 +EV + TP + + Y + V+++ DI++ K VVVNAAN Sbjct 786 ELEVAYEPSDPPTPTKADPDSDIVESYARAAGPVHLRVRDIMDPPPGCK--VVVNAANEG 843 Query 1065 LKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVN 1123 L G GV GA+ A+ + P G + GH H +H V P Sbjct 844 LLAGSGVCGAIFANATAALAADCRRL----APCPTGEAVATPGHGCGYTHIIHAVAPRRP 899 Query 1124 KG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHS 1161 + E LL+ AY + + + PLL AG++G S Sbjct 900 RDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVYGWSAAES 948 >sp|P26627|R1AB_CVMJD Replicase polyprotein 1ab (Fragment) OS=Murine coronavirus (strain defective JHM) OX=11143 GN=rep PE=3 SV=1 Length=500 Score = 119 bits (297), Expect = 7e-26, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 38/178 (21%) Query 2 ESLVPGFNEKTHVQLS---LPVLQ-------VRDVLVRGFGDSVEEVLSEARQHLKDGTC 51 E V G HV++ LP L+ +RD+ V + ++V + L+ G+ Sbjct 46 EPKVKGKTLVNHVRVDCSRLPALECCVQSAIIRDIFV---DEDPQKVEASTMMALQFGSA 102 Query 52 GLVEVEK----------GVLPQLEQPYVFIKRSDARTAP---HGHVMVEL-VAELEGIQY 97 LV+ K GVLP+ +F + T HV +L + +G+ Sbjct 103 VLVKPSKRLSVQAWAKLGVLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCL 162 Query 98 GRSGETLGVLVPHVGEIPVAYRK------VLLRKNGNKG---AGGHSYGADLKSFDLG 146 G +G +G VP V IP ++ +LLRK GNKG +G + +D Sbjct 163 G-NGRFIGWFVP-VTAIPEYAKQWLQPWSILLRKGGNKGSVTSGHSRRAVTMPVYDFN 218 Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 21/195 (11%) Query 1603 DVTKIKPHNSHEGKTFYVLPNDDT-LRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQV 1661 D+ K++ E +T P D T V AF+ + L + + + +K Sbjct 323 DIEKVEDSILSELQTELNAPADKTYEDVLAFDAIY---SETLSAFYAVPSDETHFKVC-- 377 Query 1662 NGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKT 1721 G S NC+L + L+ +Q + L+F +Q + +AG F ++ K+ Sbjct 378 -GFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKS 436 Query 1722 VGEL--GDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQF 1779 + G V + + S K N C CG + L+G++AV + G + Sbjct 437 IILPQGGYVADFAYFFLSQ---CSFKVHANWRCLKCGM-ELKLQGLDAVFFYGDV----- 487 Query 1780 KKGVQIPCTCGKQAT 1794 V C C +A Sbjct 488 ---VSHMCKCSFKAY 499 >sp|Q6X2U4|POLN_RUBVB Non-structural polyprotein p200 OS=Rubella virus (strain BRD1) OX=376262 PE=3 SV=1 Length=2116 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 64/183 (35%), Gaps = 18/183 (10%) Query 986 QTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADI 1045 S + EV + TP + + Y + V+++ +I Sbjct 767 AGDPASPISAEPADRARDAEPEVACEPGGPATPTRADPDSDIVESYARAAGPVHLRVRNI 826 Query 1046 VEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVL 1105 ++ K VVVNAAN L G GV GA+ + + + P G + Sbjct 827 MDPPPGCK--VVVNAANEGLLAGSGVCGAIFASAAATLAEDCRRL----APCPTGEAVAT 880 Query 1106 SGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYE------NFNQHEVLLAPLLSAGI 1153 GH H +H V P + + LL+ AY + + PLL AGI Sbjct 881 PGHGCGYTHIIHAVAPRRPQDPAALEQSEALLERAYRSVVALAAARRWACVACPLLGAGI 940 Query 1154 FGA 1156 +G Sbjct 941 YGW 943 >sp|O40955|POLN_RUBVR Non-structural polyprotein p200 OS=Rubella virus (strain RA27/3 vaccine) OX=11044 PE=1 SV=1 Length=2116 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 48/201 (24%), Positives = 71/201 (35%), Gaps = 21/201 (10%) Query 984 SQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNA 1043 G D +EV + T + + Y + V+++ Sbjct 768 GDPVPPTSAGPADRARDA---ELEVAYEPSGPPTSTKADPDSDIVESYARAAGPVHLRVR 824 Query 1044 DIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSC 1103 DI++ K VVVNAAN L G GV GA+ A+ + P G + Sbjct 825 DIMDPPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL----APCPTGEAV 878 Query 1104 VLSGHNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSA 1151 GH H +H V P + E LL+ AY + + + PLL A Sbjct 879 ATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAARRWARVACPLLGA 938 Query 1152 GIFGADPIHSLRVCVDTVRTN 1172 G++G SLR + RT Sbjct 939 GVYGWSAAESLRAALAATRTE 959 >sp|Q9J6K9|POLN_RUBVD Non-structural polyprotein p200 OS=Rubella virus (strain Cendehill) OX=376266 PE=3 SV=2 Length=2116 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 20/186 (11%) Query 988 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 1047 V ++ + V +P T + + Y + V+++ DI++ Sbjct 771 VPPTPAEPADRARDAELEVAYEP--SGPPTSTKADPDSDIVESYARAAGPVHLRVRDIMD 828 Query 1048 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 1107 K VVVNAAN L G GV GA+ A+ + P G + G Sbjct 829 PPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL----APCPTGEAVATPG 882 Query 1108 HNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFG 1155 H H +H V P + E LL+ AY + + + PLL AG++G Sbjct 883 HGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAARRWAYVACPLLGAGVYG 942 Query 1156 ADPIHS 1161 S Sbjct 943 WSAAES 948 >sp|O28751|Y1521_ARCFU ADP-ribose glycohydrolase AF_1521 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=AF_1521 PE=1 SV=2 Length=192 Score = 104 bits (258), Expect = 2e-23, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 69/179 (39%), Gaps = 30/179 (17%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVES----DDYIAT 1093 + + DI + +VNAAN L+HGGGVA A+ KA + + Sbjct 14 LKLAQGDITQ----YPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQ 69 Query 1094 NGP--LKVGGSCVLSGHNL----AKHCLHVVGPNVNKGEDIQLLKSAYENFN-------- 1139 G + G V NL K+ H VGP + +L + Y+ F Sbjct 70 FGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEE 129 Query 1140 -QHEVLLAPLLSAGIFGADPIHSLRVCVDTVR-------TNVYLAVFDKNLYDKLVSSF 1190 E + P +SAGI+G D + ++ V+ V L ++D+ + + F Sbjct 130 MGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVF 188 >sp|Q86500|POLN_RUBVM Non-structural polyprotein p200 OS=Rubella virus (strain M33) OX=11043 PE=1 SV=2 Length=2116 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 68/186 (37%), Gaps = 20/186 (11%) Query 988 VGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVE 1047 V ++ + V +P T + + Y + V+++ DI++ Sbjct 771 VPPTTAEPADRARHAELEVVYEP--SGPPTSTKADPDSDIVESYARAAGPVHLRVRDIMD 828 Query 1048 EAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSG 1107 K VVVNAAN L G GV GA+ A+ + P +G + G Sbjct 829 PPPGCK--VVVNAANEGLLAGSGVCGAIFANATAALAADCRRL----APCPIGEAVATPG 882 Query 1108 HNLA-KHCLHVVGPNVNKG-----EDIQLLKSAYENF------NQHEVLLAPLLSAGIFG 1155 H H +H V P + E LL+ AY + + + PLL AG++G Sbjct 883 HGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAARRWARVACPLLGAGVYG 942 Query 1156 ADPIHS 1161 S Sbjct 943 WSAAES 948 >sp|Q8U0P9|Y1536_PYRFU Uncharacterized protein PF1536 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=PF1536 PE=4 SV=1 Length=183 Score = 97.1 bits (240), Expect = 4e-21, Method: Composition-based stats. Identities = 43/181 (24%), Positives = 71/181 (39%), Gaps = 32/181 (18%) Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVE---SDD-YIAT 1093 + + DI + + +VNAAN YL+HGGGVA A+ KA ++ S + Sbjct 2 IKVVKGDITK----FRAEAIVNAANKYLEHGGGVAYAIAKAAAGDVREYIRISKEAMREQ 57 Query 1094 NGP--LKVGGSCVLSGHNL----AKHCLHVVGPNVNKG---EDIQLLKSAYENFNQH--- 1141 G + G V L K+ +H VGP + LK A + Sbjct 58 LGKDWIDHGEVVVTPPLQLEKNGVKYVIHTVGPYCGGSWDEDKKSKLKLAILGALKKADE 117 Query 1142 ---EVLLAPLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVFDKNLYDKLVSS 1189 + + P +SAGI+G + V+ V+ V+L ++ + Y+K + Sbjct 118 LGVKSIAFPAISAGIYGCPLEKVVETFVEVVKEFLPSAKSLREVFLVLYSQEDYEKALKI 177 Query 1190 F 1190 Sbjct 178 V 178 >sp|P0DC29|ADPRH_STRPQ Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) OX=193567 GN=SPs1056 PE=3 SV=1 Length=270 Score = 98.3 bits (243), Expect = 1e-20, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 69/177 (39%), Gaps = 26/177 (15%) Query 1013 EMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKH----- 1067 + + V +++ + Y L ++ + DI + + +VNAAN L Sbjct 65 DWRASFVPVSVKDCQKTNYTSL----FLYHGDI----RYLAVDAIVNAANSELLGCFIPN 116 Query 1068 GGGVAGALNKATNNAMQVESDDYIATNG-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG 1125 G + A++ + +++ + G +G + + S ++L A + +H VGP + KG Sbjct 117 HGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKG 176 Query 1126 EDIQ-----LLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 + LL Y + L +S G FG + ++ + TV Sbjct 177 HHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|P0DC28|ADPRH_STRP3 Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) OX=198466 GN=SpyM3_0856 PE=3 SV=1 Length=270 Score = 98.3 bits (243), Expect = 1e-20, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 69/177 (39%), Gaps = 26/177 (15%) Query 1013 EMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKH----- 1067 + + V +++ + Y L ++ + DI + + +VNAAN L Sbjct 65 DWRASFVPVSVKDCQKTNYTSL----FLYHGDI----RYLAVDAIVNAANSELLGCFIPN 116 Query 1068 GGGVAGALNKATNNAMQVESDDYIATNG-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG 1125 G + A++ + +++ + G +G + + S ++L A + +H VGP + KG Sbjct 117 HGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKG 176 Query 1126 EDIQ-----LLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 + LL Y + L +S G FG + ++ + TV Sbjct 177 HHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|Q99ZI6|ADPRH_STRP1 Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M1 OX=301447 GN=SPy_1216 PE=3 SV=1 Length=270 Score = 98.3 bits (243), Expect = 1e-20, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 69/177 (39%), Gaps = 26/177 (15%) Query 1013 EMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKH----- 1067 + + V +++ + Y L ++ + DI + + +VNAAN L Sbjct 65 DWRASFVPVSVKDCQKTNYTSL----FLYHGDI----RYLAVDAIVNAANSELLGCFSPN 116 Query 1068 GGGVAGALNKATNNAMQVESDDYIATNG-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG 1125 G + A++ + +++ + G +G + + S ++L A + +H VGP + KG Sbjct 117 HGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKG 176 Query 1126 EDIQ-----LLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 + LL Y + L +S G FG + ++ + TV Sbjct 177 HHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|Q5JER1|Y1890_THEKO Uncharacterized protein TK1890 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=TK1890 PE=4 SV=1 Length=180 Score = 95.6 bits (236), Expect = 1e-20, Method: Composition-based stats. Identities = 42/176 (24%), Positives = 69/176 (39%), Gaps = 32/176 (18%) Query 1040 IKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVE---SDD-YIATNG 1095 I DI + +VNAAN YL+HGGGVA A+ KA + S + G Sbjct 6 IVKGDIT----RFPAEAIVNAANRYLEHGGGVAYAIAKAAAGDPREYIRISKEAMREQLG 61 Query 1096 P--LKVGGSCVLSGHNLAKH----CLHVVGPNVN---KGEDIQLLKSAYENFNQH----- 1141 ++ G V L KH +H VGP + + L+ A + Sbjct 62 KDHIEHGEVVVTPAMRLEKHGIRYVIHTVGPYCGGIWDEDKKEKLRKAILGALRKAEELG 121 Query 1142 -EVLLAPLLSAGIFGADPIHSLRVCVDTVR---------TNVYLAVFDKNLYDKLV 1187 + + P +SAGI+G ++ + + VYL ++ + Y++ + Sbjct 122 VKTIAFPAVSAGIYGCPLEEVVKTFKEVIDEFEREAGSVERVYLVLYSEKDYERAL 177 >sp|P0DN70|ADPRH_STRPG Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) OX=160491 GN=SpyM50868 PE=1 SV=1 Length=270 Score = 97.5 bits (241), Expect = 2e-20, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 69/177 (39%), Gaps = 26/177 (15%) Query 1013 EMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKH----- 1067 + + V +++ + Y L ++ + DI + + +VNAAN L Sbjct 65 DWRASFVPVSVKDCQKTNYTSL----FLYHGDI----RYLAVDAIVNAANSELLGCFIPN 116 Query 1068 GGGVAGALNKATNNAMQVESDDYIATNG-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG 1125 G + A++ + +++ + G +G + + S ++L A + +H VGP + KG Sbjct 117 HGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKG 176 Query 1126 EDIQ-----LLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 + LL Y + L +S G FG + ++ + TV Sbjct 177 RHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|Q8P0X2|ADPRH_STRP8 Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) OX=186103 GN=spyM18_1168 PE=3 SV=1 Length=270 Score = 97.5 bits (241), Expect = 2e-20, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 69/177 (39%), Gaps = 26/177 (15%) Query 1013 EMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKH----- 1067 + + V +++ + Y L ++ + DI + + +VNAAN L Sbjct 65 DWRASFVPVSVKDCQKTNYTSL----FLYHGDI----RYLAVDAIVNAANSELLGCFIPN 116 Query 1068 GGGVAGALNKATNNAMQVESDDYIATNG-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG 1125 G + A++ + +++ + G +G + + S ++L A + +H VGP + KG Sbjct 117 HGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKG 176 Query 1126 EDIQ-----LLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 + LL Y + L +S G FG + ++ + TV Sbjct 177 RHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|Q5XC09|ADPRH_STRP6 Protein-ADP-ribose hydrolase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) OX=286636 GN=M6_Spy0919 PE=3 SV=1 Length=270 Score = 97.5 bits (241), Expect = 2e-20, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 69/177 (39%), Gaps = 26/177 (15%) Query 1013 EMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKH----- 1067 + + V +++ + Y L ++ + DI + + +VNAAN L Sbjct 65 DWRASFVPVSVKDCQKTNYTSL----FLYHGDI----RYLAVDAIVNAANSELLGCFIPN 116 Query 1068 GGGVAGALNKATNNAMQVESDDYIATNG-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKG 1125 G + A++ + +++ + G +G + + S ++L A + +H VGP + KG Sbjct 117 HGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLTSAYHLPASYIIHTVGPRITKG 176 Query 1126 EDIQ-----LLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 + LL Y + L +S G FG + ++ + TV Sbjct 177 RHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTVLK 233 >sp|Q8NYB7|ADPRH_STAAW Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0302 PE=3 SV=1 Length=266 Score = 96.7 bits (239), Expect = 5e-20, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 21/153 (14%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG-----VAGALNKATNNAMQVESDDY 1090 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 1091 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ----LLKSAY----ENFNQ 1140 I G + VG + + G+NL AK+ +H VGP + + + LL Y + +Q Sbjct 141 IRQQGRNEGVGKAKITRGYNLPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQ 200 Query 1141 HEV--LLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 H + + +S G+F + + V TV + Sbjct 201 HSLNHVAFCCISTGVFAFPQDEAAEIAVRTVES 233 >sp|Q6GCE6|ADPRH_STAAS Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0302 PE=3 SV=1 Length=266 Score = 96.7 bits (239), Expect = 5e-20, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 21/153 (14%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG-----VAGALNKATNNAMQVESDDY 1090 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 1091 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ----LLKSAY----ENFNQ 1140 I G + VG + + G+NL AK+ +H VGP + + + LL Y + +Q Sbjct 141 IRQQGRNEGVGKAKITRGYNLPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQ 200 Query 1141 HEV--LLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 H + + +S G+F + + V TV + Sbjct 201 HSLNHVAFCCISTGVFAFPQDEAAEIAVRTVES 233 >sp|Q5HIW9|ADPRH_STAAC Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0396 PE=3 SV=1 Length=266 Score = 96.7 bits (239), Expect = 5e-20, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 21/153 (14%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG-----VAGALNKATNNAMQVESDDY 1090 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 1091 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ----LLKSAY----ENFNQ 1140 I G + VG + + G+NL AK+ +H VGP + + + LL Y + +Q Sbjct 141 IRQQGRNEGVGKAKITRGYNLSAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQ 200 Query 1141 HEV--LLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 H + + +S G+F + + V TV + Sbjct 201 HSLNHVAFCCISTGVFAFPQDEAAEIAVRTVES 233 >sp|Q4QXJ8|POLN_EEEVF Polyprotein P1234 OS=Eastern equine encephalitis virus (strain Florida 91-469) OX=374598 PE=1 SV=3 Length=2494 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 47/268 (18%) Query 1039 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 1098 + DI + V+VNAAN + G GV GAL + A + P+ Sbjct 1332 RVVRGDITKS----NDEVIVNAANNKGQPGSGVCGALYRKWPGAFDKQ---------PVA 1378 Query 1099 VGGSCVLSGHNLAKHCLHVVGP---NVNKGEDIQLLKSAYE------NFNQHEVLLAPLL 1149 G + ++ + + +H VGP +++ E Q L Y N + + PLL Sbjct 1379 TGKAHLVKH---SPNVIHAVGPNFSRLSENEGDQKLSEVYMDIARIINNERFTKVSIPLL 1435 Query 1150 SAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI 1203 S GI+ L +DT ++ + DK ++ + +S +++ + Sbjct 1436 STGIYAGGKDRVMQSLNHLFTAMDTTDADITIYCLDKQWESRIKEAITRKESVEELTEDD 1495 Query 1204 AEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNL 1263 + E V S+ R +V + LE T+F I + Sbjct 1496 RPVDIELV---RVHPLSSLAGRPGYS----TTEGKVYSYLEGTRF--HQTAKDIAEIYAM 1546 Query 1264 HPDSATL-------VSDIDITFLKKDAP 1284 P+ V + ++ P Sbjct 1547 WPNKQEANEQICLYVLGESMNSIRSKCP 1574 >sp|Q6GJZ1|ADPRH_STAAR Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0322 PE=3 SV=1 Length=266 Score = 95.2 bits (235), Expect = 2e-19, Method: Composition-based stats. Identities = 32/153 (21%), Positives = 62/153 (41%), Gaps = 21/153 (14%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG-----VAGALNKATNNAMQVESDDY 1090 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 1091 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQL----LKSAYENFNQHEV- 1143 I G + VG + + G+NL AK+ +H VGP + + +L L Y + + Sbjct 141 IRQQGRNEGVGKAKITRGYNLPAKYIIHTVGPQIRRLPVSKLNQDLLAKCYLSCLKLADQ 200 Query 1144 -----LLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 + +S G+F + + V TV + Sbjct 201 QSLNHIAFCCISTGVFAFPQDEAAEIAVRTVES 233 >sp|P67344|ADPRH_STAAN Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0314 PE=1 SV=1 Length=266 Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 64/153 (42%), Gaps = 21/153 (14%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG-----VAGALNKATNNAMQVESDDY 1090 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 1091 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ----LLKSAY----ENFNQ 1140 I G + VG + G+NL AK+ +H VGP + + + LL Y + +Q Sbjct 141 IRQQGRNEGVGKAKKTRGYNLPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQ 200 Query 1141 HEV--LLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 H + + +S G+F + + V TV + Sbjct 201 HSLNHVAFCCISTGVFAFPQDEAAEIAVRTVES 233 >sp|P67343|ADPRH_STAAM Protein-ADP-ribose hydrolase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0325 PE=1 SV=1 Length=266 Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 64/153 (42%), Gaps = 21/153 (14%) Query 1036 DNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG-----VAGALNKATNNAMQVESDDY 1090 DN+++ DI +K +VNAAN + ++ ++++ + Sbjct 85 DNIFVWQGDITT----LKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI 140 Query 1091 IATNGPLK-VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQ----LLKSAY----ENFNQ 1140 I G + VG + G+NL AK+ +H VGP + + + LL Y + +Q Sbjct 141 IRQQGRNEGVGKAKKTRGYNLPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQ 200 Query 1141 HEV--LLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 H + + +S G+F + + V TV + Sbjct 201 HSLNHVAFCCISTGVFAFPQDEAAEIAVRTVES 233 >sp|Q93RG0|ADPRH_TREMD Protein-ADP-ribose hydrolase OS=Treponema medium OX=58231 PE=3 SV=1 Length=261 Score = 92.9 bits (229), Expect = 8e-19, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 67/182 (37%), Gaps = 32/182 (18%) Query 1035 TDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGA-----LNKATNNAMQVESDD 1089 + Y+ DI +K +VNAAN + A ++ ++ Sbjct 84 NGDWYVWRGDITT----LKVDAIVNAANSGMTGCWQPCHACIDNCIHTFAGVQLRTVCAG 139 Query 1090 YIATNG-PLKVGGSCVLSGHNL-AKHCLHVVGPNVNK---GEDIQLLKSAYENF------ 1138 + G G + + NL K+ LH VGP ++ D LL ++Y + Sbjct 140 IMQEQGHEEPTGTAKITPAFNLPCKYVLHTVGPIISGQLTDRDCTLLANSYTSCLNLAAE 199 Query 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT---------NVYLAVF---DKNLYDKL 1186 N + + +S G+F + + V TV + VF D+ LY+KL Sbjct 200 NGVKSIAFCCISTGVFRFPAQKAAEIAVATVEDWKAKNNSAMKIVFNVFSEKDEALYNKL 259 Query 1187 VS 1188 +S Sbjct 260 MS 261 >sp|P27283|POLN_SINDO Polyprotein P1234 OS=Sindbis virus subtype Ockelbo (strain Edsbyn 82-5) OX=31699 PE=3 SV=2 Length=2515 Score = 99.4 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 53/256 (21%), Positives = 99/256 (39%), Gaps = 34/256 (13%) Query 1047 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 1106 E + VVNAAN + G GV A+ K N+ + + G + + Sbjct 1356 ENIADCQEEAVVNAANPLGRPGEGVCRAIYKRWPNSFTDSATE---------TGTAKLTV 1406 Query 1107 GHNLAKHCLHVVGPNVNKG---EDIQLLKSAYEN----FNQH--EVLLAPLLSAGIFGAD 1157 H K +H VGP+ K E ++LL++AY N+H + + PLLS GI+ A Sbjct 1407 CH--GKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAG 1464 Query 1158 PIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEV 1211 L +D +V + DK +++ + E E K ++ ++ Sbjct 1465 KDRLEVSLNCLTTALDRTDADVTIYCLDKKWKERIDAVL--QLKESVTELKDEDMEIDDE 1522 Query 1212 KPFITESKPSVEQRK---QDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSA 1268 +I ++ RK K+ + E T + K + E +L+ + + + Sbjct 1523 LVWI-HPDSCLKGRKGFSTTKGKLYSYF-EGTKFHQAAKDMAEIKVLFPN-DQESNEQLC 1579 Query 1269 TLVSDIDITFLKKDAP 1284 + + +++ P Sbjct 1580 AYILGETMEAIREKCP 1595 >sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1 Length=502 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 45/251 (18%), Positives = 88/251 (35%), Gaps = 40/251 (16%) Query 1010 PQLEMELTPVVQTIE--------VNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAA 1061 P+ P + ++ F ++ V + N DI + + +VN Sbjct 17 PKWSTTPVPNYEPGSNESQSSSFLSPFPVDEEINAKVVLWNGDITK----LAADAIVNTT 72 Query 1062 NVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGP 1120 N L G ++ +++A + E + + G + + G+NL A++ +H VGP Sbjct 73 NESLSDRGALSERVHRAAGPELMQECRQQLL---GCRTGEAKISEGYNLPARYVIHTVGP 129 Query 1121 NVN---KGEDIQLLKSAYENF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 N K L S Y N N+ + +++ G P + + TVR Sbjct 130 RYNTKYKTAAESALFSCYRNTMRLVRENKISTIGVCVVNTTKRGYPPEDGAHIALRTVRR 189 Query 1172 ----------NVYLAVFDKN--LYDKLVSSFLEMKSEKQ---VEQKIAEIPKEEVKPFIT 1216 V V +Y K++ + ++ + +I EE +P I Sbjct 190 FLEKYGSAVDTVAFVVEGAEAVVYAKVMPIYFPRDKLEEAHALTLMPDDIGNEEGEPIIP 249 Query 1217 ESKPSVEQRKQ 1227 E + + + Sbjct 250 ERQIRIVPKPP 260 >sp|O67112|Y987_AQUAE Uncharacterized protein aq_987 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_987 PE=4 SV=1 Length=165 Score = 89.4 bits (220), Expect = 1e-18, Method: Composition-based stats. Identities = 31/165 (19%), Positives = 63/165 (38%), Gaps = 27/165 (16%) Query 1037 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 1096 ++ + I E V V+VN AN GGGVA + + ++ E+ + P Sbjct 2 DIKVVKGSITE----VDADVIVNPANSRGLMGGGVAVVIKRLGGEEIEREAVE----KAP 53 Query 1097 LKVGGSCVLSGHNLA-KHCLHVVGPNVNK---GEDIQLLKSAYENFNQ------HEVLLA 1146 + VG + + + L K +H P + + + ++ A + +++ Sbjct 54 IPVGSAVLTTAGKLKFKGVIHA--PTMEEPAMPSSEEKVRKATRAALELADKECFKIVAI 111 Query 1147 PLLSAGIFGADPIHSLRVCVDTVR-------TNVYLAVFDKNLYD 1184 P + G+ G + R V+ +R V L D+ + + Sbjct 112 PGMGTGVGGVPKEVAARAMVEEIRKFEPKCLEKVILVDIDEEMVE 156 >sp|P03317|POLN_SINDV Polyprotein P1234 OS=Sindbis virus OX=11034 PE=1 SV=2 Length=2513 Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 99/256 (39%), Gaps = 34/256 (13%) Query 1047 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 1106 E + VVNAAN + G GV A+ K + + + G + + Sbjct 1356 ENIADCQEEAVVNAANPLGRPGEGVCRAIYKRWPTSFTDSATE---------TGTARMTV 1406 Query 1107 GHNLAKHCLHVVGPNVNKG---EDIQLLKSAYEN----FNQH--EVLLAPLLSAGIFGAD 1157 L K +H VGP+ K E ++LL++AY N+H + + PLLS GI+ A Sbjct 1407 C--LGKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAG 1464 Query 1158 PIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEV 1211 L +D +V + DK +++ ++ E E K ++ ++ Sbjct 1465 KDRLEVSLNCLTTALDRTDADVTIYCLDKKWKERIDAAL--QLKESVTELKDEDMEIDDE 1522 Query 1212 KPFITESKPSVEQRK---QDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSA 1268 +I ++ RK K+ + E T + K + E +L+ + + + Sbjct 1523 LVWI-HPDSCLKGRKGFSTTKGKLYSYF-EGTKFHQAAKDMAEIKVLFPN-DQESNEQLC 1579 Query 1269 TLVSDIDITFLKKDAP 1284 + + +++ P Sbjct 1580 AYILGETMEAIREKCP 1595 >sp|P13896|POLN_WEEV Polyprotein P1234 OS=Western equine encephalitis virus OX=11039 PE=3 SV=3 Length=2467 Score = 98.3 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 32/192 (17%) Query 1039 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 1098 + DI + A + +VNAAN + G GV GAL + A + P+ Sbjct 1332 RVIRGDISKSADQ----AIVNAANSKGQPGSGVCGALYRKWPAAFDRQ---------PIA 1378 Query 1099 VGGSCVLSGHNLAKHCLHVVGPNVNKG---EDIQLLKSAYE------NFNQHEVLLAPLL 1149 VG + ++ L +H VGPN +K E L +AY N + + PLL Sbjct 1379 VGTARLVKHEPL---IIHAVGPNFSKMPEPEGDLKLAAAYMSIASIVNAERITKISVPLL 1435 Query 1150 SAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQV-EQK 1202 S GI+ L DT +V + DK +++ + +S + + + K Sbjct 1436 STGIYSGGKDRVMQSLHHLFTAFDTTDADVTIYCLDKQWETRIIEAIHRKESVEILDDDK 1495 Query 1203 IAEIPKEEVKPF 1214 +I V P Sbjct 1496 PVDIDLVRVHPN 1507 >sp|Q306W6|POLN_EEEV1 Polyprotein P1234 OS=Eastern equine encephalitis virus (strain PE-0.0155) OX=374596 PE=1 SV=3 Length=2471 Score = 97.1 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 55/268 (21%), Positives = 95/268 (35%), Gaps = 47/268 (18%) Query 1039 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 1098 + DI + V+VNAAN + G GV GAL K A P+ Sbjct 1332 RVIRGDISKSTD----EVIVNAANNKGQPGAGVCGALYKKWPGAFDKA---------PIA 1378 Query 1099 VGGSCVLSGHNLAKHCLHVVGPNVNK---GEDIQLLKSAY----ENFNQ--HEVLLAPLL 1149 G + ++ H + +H VGPN ++ E Q L Y + N+ + + PLL Sbjct 1379 TGTAHLVK-HTP--NIIHAVGPNFSRMSEVEGNQKLSEVYMDIAKIINKERYNKVSIPLL 1435 Query 1150 SAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI 1203 S G++ L +DT +V + DK ++ + +S +++ + Sbjct 1436 STGVYAGGKDRVMQSLNHLFTAMDTTDADVTIYCLDKQWETRIKDAIARKESVEELVEDD 1495 Query 1204 AEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLYIDINGNL 1263 + E V + S+ R +V + LE T+F I + Sbjct 1496 KPVDIELV---RVHPQSSLVGRPGYSTNE----GKVHSYLEGTRF--HQTAKDIAEIYAM 1546 Query 1264 HPDSATL-------VSDIDITFLKKDAP 1284 P+ V +T ++ P Sbjct 1547 WPNKQEANEQICLYVLGESMTSIRSKCP 1574 >sp|Q7TZB9|Y1934_MYCBO Uncharacterized protein Mb1934c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=lppD PE=4 SV=1 Length=358 Score = 92.5 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 36/160 (23%), Positives = 63/160 (39%), Gaps = 16/160 (10%) Query 1022 TIEVNSFSGYLKLTDNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 T + DNV + ++ + + K++ + NAAN L+H GGVA A+ +A Sbjct 170 TRGASPRPPSTCRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGG 229 Query 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHN-LAKHCLHVV-----GPNVNK---GEDIQLL 1131 +Q ES + P+ +G + + + A++ +H GP + L Sbjct 230 PELQRESTE----KAPIGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATL 285 Query 1132 KSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 + A E L G+ G + R+ V VR Sbjct 286 RKADE--LGCRSLALVAFGTGVGGFPLDDAARLMVGAVRR 323 >sp|P9WK29|Y1899_MYCTU Uncharacterized protein Rv1899c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv1899c PE=1 SV=1 Length=359 Score = 92.5 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 36/160 (23%), Positives = 63/160 (39%), Gaps = 16/160 (10%) Query 1022 TIEVNSFSGYLKLTDNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 T + DNV + ++ + + K++ + NAAN L+H GGVA A+ +A Sbjct 171 TRGASPRPPSTCRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGG 230 Query 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHN-LAKHCLHVV-----GPNVNK---GEDIQLL 1131 +Q ES + P+ +G + + + A++ +H GP + L Sbjct 231 PELQRESTE----KAPIGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATL 286 Query 1132 KSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 + A E L G+ G + R+ V VR Sbjct 287 RKADE--LGCRSLALVAFGTGVGGFPLDDAARLMVGAVRR 324 >sp|Q86924|POLN_AURAV Polyprotein P1234 OS=Aura virus OX=44158 PE=3 SV=3 Length=2499 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 32/251 (13%) Query 1051 KVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL 1110 VVNAAN K G GV A+ K + + + + V + + HN Sbjct 1358 DCTEEAVVNAANARGKPGDGVCRAIFKKWPKSFENATTE---------VETAVMKPCHN- 1407 Query 1111 AKHCLHVVGPNVNKG---EDIQLLKSAY----ENFNQHEV--LLAPLLSAGIFGADPI-- 1159 K +H VGP+ K E +LL++AY + N+ + + PLLS GI+ A Sbjct 1408 -KVVIHAVGPDFRKYTLEEATKLLQNAYHDVAKIVNEKGISSVAIPLLSTGIYAAGADRL 1466 Query 1160 ----HSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFI 1215 L +D +V + DK ++ + E+ E K +I +E Sbjct 1467 DLSLRCLFTALDRTDADVTIYCLDKKWEQRIADAIR--MREQVTELKDPDIEIDEGL-TR 1523 Query 1216 TESKPSVEQRKQDDKKIKACVE--EVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSD 1273 ++ + E T + K + E L+ D+ + Sbjct 1524 VHPDSCLKDHIGYSTQYGKLYSYFEGTKFHQTAKDIAEIRALFPDVQ-AANEQICLYTLG 1582 Query 1274 IDITFLKKDAP 1284 + +++ P Sbjct 1583 EPMESIREKCP 1593 >sp|P9WK28|Y1899_MYCTO Uncharacterized protein MT1950 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1950 PE=4 SV=1 Length=374 Score = 92.5 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 36/160 (23%), Positives = 63/160 (39%), Gaps = 16/160 (10%) Query 1022 TIEVNSFSGYLKLTDNVYIKNADIVE-EAKKVKPTVVVNAANVYLKHGGGVAGALNKATN 1080 T + DNV + ++ + + K++ + NAAN L+H GGVA A+ +A Sbjct 186 TRGASPRPPSTCRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGG 245 Query 1081 NAMQVESDDYIATNGPLKVGGSCVLSGHN-LAKHCLHVV-----GPNVNK---GEDIQLL 1131 +Q ES + P+ +G + + + A++ +H GP + L Sbjct 246 PELQRESTE----KAPIGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATL 301 Query 1132 KSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT 1171 + A E L G+ G + R+ V VR Sbjct 302 RKADE--LGCRSLALVAFGTGVGGFPLDDAARLMVGAVRR 339 >sp|Q306W8|POLN_EEEV8 Polyprotein P1234 OS=Eastern equine encephalitis virus (strain PE-3.0815) OX=374597 PE=1 SV=3 Length=2474 Score = 94.8 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 43/246 (17%) Query 1039 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 1098 + DI + +VNAAN + G GV GAL K A P+ Sbjct 1332 RVIRGDISKSTD----EAIVNAANNKGQPGAGVCGALYKKWPGAFDKV---------PIA 1378 Query 1099 VGGSCVLSGHNLAKHCLHVVGPNVNKGEDI---QLLKSAYENFNQ------HEVLLAPLL 1149 G + ++ H + +H VGPN ++ ++ Q L Y + + + + PLL Sbjct 1379 TGTAHLVK-HTP--NIIHAVGPNFSRVSEVEGNQKLSEVYMDIAKIINRERYNKVSIPLL 1435 Query 1150 SAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKL---------VSSFLEMK 1194 S GI+ L +DT +V + DK ++ V +E Sbjct 1436 STGIYAGGKDRVMQSLNHLFTAMDTTDADVTIYCLDKQWEARIKDAIARKESVEELVEDD 1495 Query 1195 SEKQVEQ---KIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTE 1251 +E E K + + E+ + E Sbjct 1496 KPVDIELVRVHPLSSLVGRPGYSTDEGKVHSYLEGTRFHQTAKDIAEIYAMWPNKQEANE 1555 Query 1252 NLLLYI 1257 + LY+ Sbjct 1556 QICLYV 1561 >sp|Q8JUX6|POLN_CHIKS Polyprotein P1234 OS=Chikungunya virus (strain S27-African prototype) OX=371094 PE=1 SV=1 Length=2474 Score = 92.9 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 84/230 (37%), Gaps = 38/230 (17%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +K DI + VVNAAN G GV A+ K + Sbjct 1333 CAPSYRVKRMDIAKN----DEECVVNAANPRGLPGDGVCKAVYKKWPESF---------K 1379 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGP---NVNKGEDIQLLKSAYENFNQH------EVL 1144 N VG + + +H VGP N ++ E + L +AY + + Sbjct 1380 NSATPVGTAKTVMCGTYP--VIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSV 1437 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS G++ L +D+ +V + DK ++K +S ++M+++ + Sbjct 1438 AIPLLSTGVYSGGKDRLTQSLNHLFTAMDSTDADVVIYCRDKE-WEKKISEAIQMRTQVE 1496 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKF 1248 + + I + V S+ RK A + LE T+F Sbjct 1497 LLDEHISIDCDVV---RVHPDSSLAGRKGYSTTEGAL----YSYLEGTRF 1539 >sp|Q5XXP4|POLN_CHIK3 Polyprotein P1234 OS=Chikungunya virus (strain 37997) OX=371095 PE=1 SV=1 Length=2474 Score = 92.5 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 45/230 (20%), Positives = 84/230 (37%), Gaps = 38/230 (17%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +K DI + VVNAAN G GV A+ K + Sbjct 1333 CAPSYRVKRMDIAKN----DEECVVNAANPRGLPGDGVCKAVYKKWPESF---------K 1379 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGP---NVNKGEDIQLLKSAYENFNQH------EVL 1144 N VG + + +H VGP N ++ E + L +AY + + Sbjct 1380 NSATPVGTAKTVMCGTYP--VIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSV 1437 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS G++ L +D+ +V + DK ++K ++ ++M+++ + Sbjct 1438 AIPLLSTGVYSGGKDRLTQSLNHLFTALDSTDADVVIYCRDKE-WEKKIAEAIQMRTQVE 1496 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKF 1248 + + + + + S+ RK + + LE T+F Sbjct 1497 LLDEHISVDCDII---RVHPDSSLAGRKGYS----TTEGSLYSYLEGTRF 1539 >sp|O93327|H2AY_CHICK Core histone macro-H2A.1 OS=Gallus gallus OX=9031 GN=MACROH2A1 PE=1 SV=4 Length=369 Score = 87.9 bits (216), Expect = 3e-16, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 64/184 (35%), Gaps = 22/184 (12%) Query 1029 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 1088 + L L + + ADI + VV+ N GG V L K Sbjct 188 TKSLFLGQKLQVVQADI----ATIDSDAVVHPTNSDFYTGGEVGSTLEKKGGKEFVEAVI 243 Query 1089 DYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENF------NQH 1141 + NGPL + G+ V +GH L AK +H P + +LL+ +N + Sbjct 244 ELRKKNGPLDIAGAVVSAGHGLPAKFVIHCNSPGWGSDKCEELLEKTVKNCLALADEKKL 303 Query 1142 EVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSSF 1190 + + P + +G G + ++ + + VY +FD V Sbjct 304 KSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEM 363 Query 1191 LEMK 1194 ++ Sbjct 364 AKLD 367 >sp|Q02874|H2AY_RAT Core histone macro-H2A.1 OS=Rattus norvegicus OX=10116 GN=Macroh2a1 PE=1 SV=5 Length=368 Score = 87.9 bits (216), Expect = 3e-16, Method: Composition-based stats. Identities = 38/184 (21%), Positives = 65/184 (35%), Gaps = 22/184 (12%) Query 1029 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 1088 + L L + + ADI + VV+ N GG V L K Sbjct 187 TKSLFLGQKLQVVQADI----ASIDSDAVVHPTNADFYIGGEVGSTLEKKGGKEFVEAVL 242 Query 1089 DYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN------FNQH 1141 + NGPL+V G+ V +GH L AK +H P + +LL+ +N + Sbjct 243 ELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDRKL 302 Query 1142 EVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSSF 1190 + + P + +G G + ++ + + VY +FD V Sbjct 303 KSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEM 362 Query 1191 LEMK 1194 ++ Sbjct 363 AKLD 366 >sp|O75367|H2AY_HUMAN Core histone macro-H2A.1 OS=Homo sapiens OX=9606 GN=MACROH2A1 PE=1 SV=5 Length=369 Score = 87.5 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 38/184 (21%), Positives = 65/184 (35%), Gaps = 22/184 (12%) Query 1029 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 1088 + L L + + ADI + VV+ N GG V L K Sbjct 188 TKSLFLGQKLQVVQADI----ASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVL 243 Query 1089 DYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN------FNQH 1141 + NGPL+V G+ V +GH L AK +H P + +LL+ +N + Sbjct 244 ELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKL 303 Query 1142 EVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSSF 1190 + + P + +G G + ++ + + VY +FD V Sbjct 304 KSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEM 363 Query 1191 LEMK 1194 ++ Sbjct 364 AKLD 367 >sp|O90370|POLN_ONNVI Polyprotein P1234 OS=O'nyong-nyong virus (strain Igbo Ora) OX=79899 PE=3 SV=1 Length=2513 Score = 90.2 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 46/231 (20%), Positives = 85/231 (37%), Gaps = 40/231 (17%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +K DI + + VVNAAN G GV A+ + + Sbjct 1333 CAPSYRVKRMDIAKNTE----ECVVNAANPRGVPGDGVCKAVYRKWPESF---------R 1379 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQH------EVL 1144 N VG + + +H VGPN + + + L SAY + + Sbjct 1380 NSATPVGTAKTIMCGQYP--VIHAVGPNFSNYSEAEGDRELASAYREVAKEVSRLGVSSV 1437 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS G++ L +D+ +V + DK ++K ++ + ++S+ + Sbjct 1438 AIPLLSTGVYSGGKDRLLQSLNHLFAAMDSTDADVVIYCRDKE-WEKKITEAISLRSQVE 1496 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVE-EVTTTLEETKF 1248 + + + V S+ +K + VE + + LE T+F Sbjct 1497 LLDDHISVDCDIV---RVHPDSSLA-----GRKGYSTVEGALYSYLEGTRF 1539 >sp|Q9QZQ8|H2AY_MOUSE Core histone macro-H2A.1 OS=Mus musculus OX=10090 GN=Macroh2a1 PE=1 SV=4 Length=369 Score = 86.7 bits (213), Expect = 6e-16, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 22/184 (12%) Query 1029 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 1088 + L L + + ADI + VV+ N GG V L K Sbjct 188 TKSLFLGQKLQVVQADI----ASIDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVL 243 Query 1089 DYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN------FNQH 1141 + NGPL+V G+ + +GH L AK +H P + +LL+ +N + Sbjct 244 ELRKKNGPLEVAGAAISAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDRKL 303 Query 1142 EVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSSF 1190 + + P + +G G + ++ + + VY +FD V Sbjct 304 KSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFMLFDSESIGIYVQEM 363 Query 1191 LEMK 1194 ++ Sbjct 364 AKLD 367 >sp|Q2KIX2|GDAP2_BOVIN Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus OX=9913 GN=GDAP2 PE=2 SV=1 Length=497 Score = 87.9 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 98/298 (33%), Gaps = 42/298 (14%) Query 978 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 1037 D L SQ S N E+ + E T + F + Sbjct 2 DPLGAPSQFVDVDTLPSWGNSCEDQLNASEIAAETYQEET------IRSPFLYNKDINGK 55 Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V + D+ + T +VN +N L V+ ++ ++ + Sbjct 56 VVLWKGDV----ALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKEDLQKLRG----C 107 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAP 1147 + G + + G NL A+ +H VGP + L S Y N Q + Sbjct 108 RTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFC 167 Query 1148 LLSAGIFGADPIHSLRVCVDTVR----------TNVYLAV--FDKNLYDKLVSSFLEMKS 1195 ++++ G + + + TVR V AV ++ Y KL+ + Sbjct 168 VINSAKRGYPLEDATHIALRTVRRFLEIHGETLEKVVFAVSELEEATYQKLLPLYF---- 223 Query 1196 EKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENL 1253 + ++++ +P E +P V +R+ + E+ EE + L +L Sbjct 224 PRSLKEESRSLPCLPADIGNAEGEPVVPERQIRISEKPGAPED--NQEEEDEGLGVDL 279 >sp|O90368|POLN_ONNVS Polyprotein P1234 OS=O'nyong-nyong virus (strain SG650) OX=374989 PE=1 SV=1 Length=2513 Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 40/231 (17%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +K DI + + VVNAAN G GV A+ + + Sbjct 1333 CAPSYRVKRMDIAKNTE----ECVVNAANPRGVPGDGVCKAVYRKWPESF---------R 1379 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQH------EVL 1144 N VG + + +H VGPN + + + L S Y + + Sbjct 1380 NSATPVGTAKTIMCGQYP--VIHAVGPNFSNYSEAEGDRELASVYREVAKEVSRLGVSSV 1437 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS G++ L +D+ +V + DK ++K ++ + ++S+ + Sbjct 1438 AIPLLSTGVYSGGKDRLLQSLNHLFTAMDSTDADVVIYCRDKE-WEKKITEAISLRSQVE 1496 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVE-EVTTTLEETKF 1248 + + + V S+ +K + VE + + LE T+F Sbjct 1497 LLDDHISVDCDIV---RVHPDSSLA-----GRKGYSTVEGALYSYLEGTRF 1539 >sp|P13886|POLN_ONNVG Polyprotein P1234 OS=O'nyong-nyong virus (strain Gulu) OX=11028 PE=3 SV=2 Length=2514 Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 40/231 (17%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +K DI + + VVNAAN G GV A+ + + Sbjct 1333 CAPSYRVKRMDIAKNTE----ECVVNAANPRGVPGDGVCKAVYRKWPESF---------R 1379 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQH------EVL 1144 N VG + + +H VGPN + + + L S Y + + Sbjct 1380 NSATPVGTAKTIMCGQYP--VIHAVGPNFSNYSEAEGDRELASVYREVAKEVSRLGVSSV 1437 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS G++ L +D+ +V + DK ++K ++ + ++S+ + Sbjct 1438 AIPLLSTGVYSGGKDRLLQSLNHLFAAMDSTDADVVIYCRDKE-WEKKITEAISLRSQVE 1496 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVE-EVTTTLEETKF 1248 + + + V S+ +K + VE + + LE T+F Sbjct 1497 LLDDHISVDCDIV---RVHPDSSLA-----GRKGYSTVEGALYSYLEGTRF 1539 >sp|Q5XGM5|GDAP2_XENLA Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis OX=8355 PE=2 SV=1 Length=496 Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 41/247 (17%), Positives = 87/247 (35%), Gaps = 34/247 (14%) Query 1026 NSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQV 1085 + F + + V + D+ + T +VN +N L V+ ++ + + + Sbjct 45 SPFPYRKDINEKVILWKGDV----ALLNCTALVNTSNETLTDKNPVSDSIFRYSGPELLE 100 Query 1086 ESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH 1141 E + + G + + G NL A++ +H VGP + L S Y N Q Sbjct 101 E----MQKLKGCRTGEAKLTKGFNLAARYIIHTVGPKYKTKYRTAAESSLYSCYRNVLQL 156 Query 1142 ------EVLLAPLLSAGIFGADPIHSLRVCVDTVR----------TNVYLAVFDKNL--Y 1183 + +++ + + + TVR V AV ++ Y Sbjct 157 AKEQGMASVGFCVITTQKRCYPLDDATHIALRTVRRFLEVHGQALEKVVFAVTEEEEGTY 216 Query 1184 DKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTL 1243 +L+ + + +E++ I ++ +P V +R+ + EE + Sbjct 217 RRLLPLYF----PRSLEEEQRSILLLPQDIGNSDGEPVVPERQIRISEKPGVQEEDSEEE 272 Query 1244 EETKFLT 1250 K L+ Sbjct 273 GLVKDLS 279 >sp|Q9YBE9|Y1648_AERPE Uncharacterized protein APE_1648.1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) OX=272557 GN=APE_1648.1 PE=4 SV=2 Length=189 Score = 80.2 bits (196), Expect = 4e-15, Method: Composition-based stats. Identities = 37/169 (22%), Positives = 66/169 (39%), Gaps = 23/169 (14%) Query 1046 VEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVL 1105 + + KV+ VVN AN + GGG AGAL +A + ++ E+ P+ VG + + Sbjct 15 MGDLTKVRAEAVVNPANSLMIMGGGAAGALKRAGGSVIEEEAM----RKAPVPVGEAVIT 70 Query 1106 SGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYENFN---------QHEVLLAPLLSAGIFG 1155 SG +L A+ +H P + + L +A++ E + P + AG+ G Sbjct 71 SGGSLPARFVIHA--PTMEEPGMRIPLVNAFKASYAALRLASEAGIESVAMPAMGAGVGG 128 Query 1156 ADPIHSLR---VCVDTVRTN----VYLAVFDKNLYDKLVSSFLEMKSEK 1197 R + +R + L + Y + E + Sbjct 129 LSVAEVAREAAMAASILRGKWPRYIILVARGEEAYRGMEKGVREALGVE 177 >sp|Q5CZL1|GDAP2_XENTR Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis OX=8364 PE=2 SV=1 Length=496 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 91/247 (37%), Gaps = 44/247 (18%) Query 1026 NSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQV 1085 + F + V + D+ + T +VN +N L V+ ++ + + + Sbjct 45 SPFPYRNDINKKVILWRGDV----ALLSCTALVNTSNETLTDKNPVSDSIFRYSGPELSE 100 Query 1086 ESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH 1141 E + + G + + G NL A++ +H VGP + L S Y N Q Sbjct 101 E----MQKLKGCRTGEAKLTKGFNLAARYIIHTVGPKYKTKYRTAAESSLYSCYRNVLQL 156 Query 1142 ------EVLLAPLLSAGIFGADPIHSLRVCVDTVR----------TNVYLAVFDKNL--Y 1183 + +++ P S + + TVR V AV ++ Y Sbjct 157 AKEQGMASVGFCVIATQKRCYPPEDSTHIALRTVRRFLEAHGAALEKVVFAVTEQEEGTY 216 Query 1184 DKLVSSFLEMKSEKQVEQKIAEIP-------KEEVKPFITESKPSVEQRK---QDDKKIK 1233 +L+ + + +E++ IP E +P + E + + ++ DD + + Sbjct 217 RRLLPLYF----PRSLEEEQRSIPFLPQDIGNAEGEPVVPERQIRISEKPGGQDDDSEEE 272 Query 1234 ACVEEVT 1240 V++++ Sbjct 273 GLVKDLS 279 >sp|Q8QZ73|POLN_MAYAB Polyprotein P1234 OS=Mayaro virus (strain Brazil) OX=374990 PE=1 SV=3 Length=2437 Score = 87.1 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 82/250 (33%), Gaps = 41/250 (16%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 +K ADI + VVNAAN + G GV A+ + A Sbjct 1334 CAPAYAVKRADIATAIE----DAVVNAANHRGQVGDGVCRAVARKWPQAF---------R 1380 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYE---------NFNQHEVL 1144 N VG + + + +H VGPN N + + + N + Sbjct 1381 NAATPVGTAKTVKCDE--TYIIHAVGPNFNNTSEAEGDRDLAAAYRAVAAEINRLSISSV 1438 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS GIF A L +DT V + DK K+ + + + Sbjct 1439 AIPLLSTGIFSAGKDRVHQSLSHLLAAMDTTEARVTIYCRDKTWEQKIKTVLQNRSATEL 1498 Query 1199 V--EQKIAEIPKEEVKPFITESKP-------SVEQRKQDDKKIKACVE--EVTTTLEETK 1247 V E + +P ++ + K +A ++ E+TT + Sbjct 1499 VSDELQFEVNLTRVHPDSSLVGRPGYSTTDGTLYSYMEGTKFHQAALDMAEITTLWPRVQ 1558 Query 1248 FLTENLLLYI 1257 E++ LY Sbjct 1559 DANEHICLYA 1568 >sp|Q9DBL2|GDAP2_MOUSE Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus OX=10090 GN=Gdap2 PE=1 SV=1 Length=498 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 46/271 (17%), Positives = 90/271 (33%), Gaps = 40/271 (15%) Query 978 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 1037 D L SQ S + EV + + + F + Sbjct 2 DPLGAPSQFVDVDTLLSWGDSYED-----EVDCA-DSTAEAFQEDASRSPFVYSRDVNGK 55 Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V + D+ + T +VN +N L V+ ++ ++ + + Sbjct 56 VVLWKGDV----ALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKED----LQKLKGC 107 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAP 1147 + G + + G NL A+ +H VGP + L S Y N Q + Sbjct 108 RTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFC 167 Query 1148 LLSAGIFGADPIHSLRVCVDTVR----------TNVYLAV--FDKNLYDKLVSSFLEMKS 1195 ++++ G + + + TVR V AV ++ Y KL+ + Sbjct 168 VINSAKRGYPLEDATHIALRTVRRFLEIHGENIEKVVFAVSELEEATYQKLLPLYF---- 223 Query 1196 EKQVEQKIAEIPKEEVKPFITESKPSVEQRK 1226 + ++++I +P E +P V +R+ Sbjct 224 PRSLKEEIRSLPYLPADIGNAEGEPVVPERQ 254 >sp|Q9NXN4|GDAP2_HUMAN Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens OX=9606 GN=GDAP2 PE=1 SV=1 Length=497 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 52/324 (16%), Positives = 106/324 (33%), Gaps = 47/324 (15%) Query 978 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 1037 D L SQ S + + ++ E T + F + Sbjct 2 DPLGAPSQFVDVDTLPSWGDSCQDELNSSDTTAEIFQEDT------VRSPFLYNKDVNGK 55 Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V + D+ + T +VN +N L V+ ++ ++ + + Sbjct 56 VVLWKGDV----ALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKED----LQKLKGC 107 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAP 1147 + G + + G NL A+ +H VGP + L S Y N Q + Sbjct 108 RTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFC 167 Query 1148 LLSAGIFGADPIHSLRVCVDTVR----------TNVYLAVFD--KNLYDKLVSSFLEMKS 1195 ++++ G + + + TVR V AV D + Y KL+ + Sbjct 168 VINSAKRGYPLEDATHIALRTVRRFLEIHGETIEKVVFAVSDLEEGTYQKLLPLYF---- 223 Query 1196 EKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL 1255 + ++++ +P E +P V +R+ + E+ EE + L +L Sbjct 224 PRSLKEENRSLPYLPADIGNAEGEPVVPERQIRISEKPGAPED--NQEEEDEGLGVDLSF 281 Query 1256 -----YIDINGNLHPDSATLVSDI 1274 + + G++ ++ Sbjct 282 IGSHAFARMEGDIDKQRKLILQGQ 305 >sp|P87515|POLN_BFV Polyprotein P1234 OS=Barmah forest virus OX=11020 PE=3 SV=3 Length=2411 Score = 86.7 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 89/266 (33%), Gaps = 43/266 (16%) Query 1039 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 1098 +K DI + VVNAAN G GV GA+ + +A G + Sbjct 1336 RVKRGDISNAPE----DAVVNAANQQGVKGAGVCGAIYRKWPDAF-----------GDVA 1380 Query 1099 VGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENF------NQHEVLLAPLL 1149 +S K +H VGPN +K + + L SAY + + PLL Sbjct 1381 TPTGTAVSKSVQDKLVIHAVGPNFSKCSEEEGDRDLASAYRAAAEIVMDKKITTVAVPLL 1440 Query 1150 SAGIFGADP------IHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQVEQKI 1203 S GI+ ++ L D +V + DK K+ + S + V+ + Sbjct 1441 STGIYAGGKNRVEQSLNHLFTAFDNTDADVTIYCMDKTWEKKIKEAIDHRTSVEMVQDDV 1500 Query 1204 AEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLLY-IDINGN 1262 + E + S+ RK V + LE TKF + + + + Sbjct 1501 ----QLEEELVRVHPLSSLAGRKGYSTD----SGRVFSYLEGTKFHQTAVDIAEMQVLWP 1552 Query 1263 LHPDSA----TLVSDIDITFLKKDAP 1284 +S + ++ P Sbjct 1553 ALKESNEQIVAYTLGESMDQIRGKCP 1578 >sp|P13887|POLN_RRVN Polyprotein P1234 OS=Ross river virus (strain NB5092) OX=11031 PE=3 SV=2 Length=2480 Score = 86.3 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 41/250 (16%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + ++ DI A+ VVNAAN G GV A+ + ++ Sbjct 1331 CAPSYRVRRTDISGHAE----EAVVNAANAKGTVGVGVCRAVARKWPDSF---------K 1377 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVN---KGEDIQLLKSAYE------NFNQHEVL 1144 VG + ++ + + + +H VGPN + + E + L +AY N + + + Sbjct 1378 GAATPVGTAKLVQANGM--NVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSV 1435 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS G+F L +DT +V + DK K+ + + + Sbjct 1436 AIPLLSTGVFSGGKDRVMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVEL 1495 Query 1199 VEQKIA-EIPKEEVKPF----------ITESKPSVEQRKQDDKKIKACVEEVTTTLEETK 1247 V + I+ E V P IT+ K + + E++T + + Sbjct 1496 VSEDISLESDLIRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQ 1555 Query 1248 FLTENLLLYI 1257 E + LY Sbjct 1556 DANEQICLYA 1565 >sp|P13888|POLN_RRVT Polyprotein nsP1234 (Fragment) OS=Ross river virus (strain T48) OX=11032 PE=1 SV=2 Length=1149 Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 91/249 (37%), Gaps = 41/249 (16%) Query 1035 TDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATN 1094 + ++ DI A+ VVNAAN G GV A+ + ++ Sbjct 1 APSYRVRRTDISGHAE----EAVVNAANAKGTVGDGVCRAVARKWPDSF---------KG 47 Query 1095 GPLKVGGSCVLSGHNLAKHCLHVVGPNVN---KGEDIQLLKSAYE------NFNQHEVLL 1145 VG + ++ + + + +H VGPN + + E + L +AY N + + + Sbjct 48 AATPVGTAKLVQANGM--NVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVA 105 Query 1146 APLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQV 1199 PLLS G+F L +DT +V + DK K+ + + + V Sbjct 106 IPLLSTGVFSGGKDRVMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELV 165 Query 1200 EQKIA-EIPKEEVKPF----------ITESKPSVEQRKQDDKKIKACVEEVTTTLEETKF 1248 + I+ E V P IT+ K + + E++T + + Sbjct 166 SEDISLESDLIRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQD 225 Query 1249 LTENLLLYI 1257 E + LY Sbjct 226 ANEQICLYA 234 >sp|Q66H63|GDAP2_RAT Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus OX=10116 GN=Gdap2 PE=2 SV=1 Length=497 Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 89/271 (33%), Gaps = 40/271 (15%) Query 978 DWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN 1037 D L SQ S + EV + + + F + Sbjct 2 DPLGAPSQFVDVDTLVSWGDSYED-----EVNSS-DSTAEAFQEDSNRSPFLYNRDINGK 55 Query 1038 VYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 V + D+ + T +VN +N L V+ ++ ++ + + Sbjct 56 VVLWKGDV----ALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKED----LQKLKGC 107 Query 1098 KVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAP 1147 + G + + G NL A+ +H VGP + L S Y N Q + Sbjct 108 RTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFC 167 Query 1148 LLSAGIFGADPIHSLRVCVDTVR----------TNVYLAV--FDKNLYDKLVSSFLEMKS 1195 ++++ G + + + TVR V A+ ++ Y KL+ + Sbjct 168 VINSAKRGYPLEDATHIALRTVRRFLEIHGETIEKVVFAISELEEATYQKLLPLYF---- 223 Query 1196 EKQVEQKIAEIPKEEVKPFITESKPSVEQRK 1226 + ++++ +P E +P V +R+ Sbjct 224 PRSLKEESQSLPSLPADIGNAEGEPVVPERQ 254 >sp|Q8QL53|POLN_SLDV Polyprotein P1234 OS=Sleeping disease virus OX=78540 PE=3 SV=1 Length=2593 Score = 81.7 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 64/179 (36%), Gaps = 37/179 (21%) Query 1029 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESD 1088 GY L N+ + V+VNAAN + G GV GAL A +A Sbjct 1422 PGYRVLNKNII-----------TAEEEVLVNAANSNGRPGDGVCGALYGAFGDAF----- 1465 Query 1089 DYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGED---IQLLKSAYEN------FN 1139 NG + G + ++ G L +H G + + ++ + L++AY N Sbjct 1466 ----PNGAIGAGNAVLVRG--LEATIIHAAGADFREVDEETGARQLRAAYRAAATLVTAN 1519 Query 1140 QHEVLLAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLE 1192 PLLS IF +L DT +V + N+ ++ + Sbjct 1520 GITSAAIPLLSTHIFSNGRNRLEQSFGALVEAFDTTECDVTIYCLANNMAARIQQLIDD 1578 >sp|Q66HX8|GDAP2_DANRE Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio OX=7955 GN=gdap2 PE=2 SV=1 Length=504 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 34/223 (15%) Query 1026 NSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQV 1085 + F+ + + + + N D+ + T +VN +N L ++ ++++ ++ Sbjct 55 SPFTFRQDINNKIVLFNGDV----ALLNCTAIVNTSNETLTDKNPISDSIHRHAGPELR- 109 Query 1086 ESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH 1141 D+ + G + G + + G +L A+ +H VGP + L S Y N Q Sbjct 110 --DELLKLKG-CRTGEAKMTEGFDLAARFIIHTVGPKYKAKYRTAAESSLYSCYRNVLQL 166 Query 1142 E------VLLAPLLSAGIFGADPIHSLRVCVDTVR----------TNVYLAVFD--KNLY 1183 + ++S + + + TVR + AV D + +Y Sbjct 167 AKEHAMVSVGFCVISTVKRAYPVEDATHIALRTVRRFLENHGENIETLVFAVSDVEEPVY 226 Query 1184 DKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRK 1226 KL+ + + +++ +P +E +P V +R+ Sbjct 227 RKLLPLYY----PRSKQEERISLPLLPADIGNSEGEPVVPERQ 265 >sp|Q8JJX1|POLN_SPDV Polyprotein P1234 OS=Salmon pancreas disease virus OX=84589 PE=3 SV=1 Length=2601 Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 58/149 (39%), Gaps = 26/149 (17%) Query 1053 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAK 1112 + V+VNAAN + G GV GAL A +A NG + G + ++ G L Sbjct 1436 EEEVLVNAANSNGRPGDGVCGALYGAFGDAF---------PNGAIGAGNAVLVRG--LEA 1484 Query 1113 HCLHVVGPNVNKGED---IQLLKSAYEN------FNQHEVLLAPLLSAGIFGADPIH--- 1160 +H G + + ++ + L++AY N PLLS IF Sbjct 1485 TIIHAAGADFREVDEETGARQLRAAYRAAATLVTANGITSAAIPLLSTHIFSNGRNRLEQ 1544 Query 1161 ---SLRVCVDTVRTNVYLAVFDKNLYDKL 1186 +L DT +V + N+ ++ Sbjct 1545 SFSALVEAFDTTECDVTIYCLANNMAARI 1573 >sp|Q5Y389|POLN_GETV Polyprotein P1234 OS=Getah virus OX=59300 PE=1 SV=3 Length=2467 Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 77/230 (33%), Gaps = 38/230 (17%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + ++ ADI VVNAAN GV A+ K ++ Sbjct 1332 CAPSYRVRRADI----SGHSEEAVVNAANAKGTVSDGVCRAVAKKWPSSF---------K 1378 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVN---KGEDIQLLKSAYENF------NQHEVL 1144 VG + ++ + +H VGPN + + E + L +AY N + + Sbjct 1379 GAATPVGTAKMIRADGM--TVIHAVGPNFSTVTEAEGDRELAAAYRAVASIISTNNIKSV 1436 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS G F L +D +V + DKN K+ E + Sbjct 1437 AVPLLSTGTFSGGKDRVMQSLNHLFTALDATDADVVIYCRDKNWEKKI----QEAIDRRT 1492 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKF 1248 + ++E E + R A ++ + LE T+F Sbjct 1493 AIELVSEDVTLETDLVRVHPDSCLVGRNGYS----ATDGKLYSYLEGTRF 1538 >sp|Q9JGL0|POLN_SAGV Polyprotein P1234 OS=Sagiyama virus OX=59303 PE=3 SV=3 Length=2467 Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 77/230 (33%), Gaps = 38/230 (17%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + ++ ADI VVNAAN GV A+ K ++ Sbjct 1332 CAPSYRVRRADI----SGHGEEAVVNAANAKGTVSDGVCRAVAKKWPSSF---------K 1378 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVN---KGEDIQLLKSAYENF------NQHEVL 1144 VG + ++ + +H VGPN + + E + L +AY N + + Sbjct 1379 GAATPVGTAKMIRADGM--TVIHAVGPNFSTVTEAEGDRELAAAYRAVASIISTNNIKSV 1436 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS G F L +D +V + DKN K+ E + Sbjct 1437 AVPLLSTGTFSGGKDRVMQSLNHLFTALDATDADVVIYCRDKNWEKKI----QEAIDRRT 1492 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKF 1248 + ++E E + R A ++ + LE T+F Sbjct 1493 AIELVSEDVTLETDLVRVHPDSCLVGRNGYS----ATDGKLYSYLEGTRF 1538 >sp|Q6QLN1|POLN_AHEV Non-structural polyprotein pORF1 OS=Avian hepatitis E virus (isolate Chicken/California/Meng) OX=516993 GN=ORF1 PE=3 SV=1 Length=1531 Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 49/260 (19%), Positives = 86/260 (33%), Gaps = 16/260 (6%) Query 986 QTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADI 1045 E Q + + Q + T V + + G ++ + I Sbjct 569 PAPPGNPVIESVQGSGAGGPEVSESQPGLTPTREVTNMPLPPQRGQEEVLAVLPSGARVI 628 Query 1046 VEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVL 1105 V V +VN AN + GGG+ G ++ + + L G Sbjct 629 VGNLLDVAADWLVNPANRDHQPGGGLCGMFHRRW-PHLWPVCGEVQD----LPTGPVIFQ 683 Query 1106 SGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQ-HEVLLAPLLSAGIFGADPIHSLRV 1164 G +H GP+ D L+ Y +Q H + +PL+SAGI+ A S Sbjct 684 QG---PPKVIHAPGPDYRIKPDPDGLRRVYAVVHQAHGTVASPLISAGIYRAPARESFEA 740 Query 1165 CVDTVRTNVYLAVF---DKNLYDKLVSSFLEMKSEKQVEQKIAEIPK----EEVKPFITE 1217 T R L V +++ D +++ E V++ +A++ E +P+ Sbjct 741 WAATARDGDLLVVQRSMAQHIRDFVLNEGRHRPRELHVDRAMADMVNYGLATEPEPYNEL 800 Query 1218 SKPSVEQRKQDDKKIKACVE 1237 K + A V Sbjct 801 VKGVEVAPMTVKYALIAGVP 820 >sp|Q4R678|GDAP2_MACFA Ganglioside-induced differentiation-associated protein 2 OS=Macaca fascicularis OX=9541 GN=GDAP2 PE=2 SV=1 Length=461 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 43/255 (17%), Positives = 89/255 (35%), Gaps = 37/255 (15%) Query 1047 EEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLS 1106 +E T +VN +N L V+ ++ ++ + + + G + + Sbjct 25 DELNSSDTTAIVNTSNESLTDKNPVSESIFMLAGPDLKED----LQKLKGCRTGEAKLTK 80 Query 1107 GHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENFNQH------EVLLAPLLSAGIFGA 1156 G NL A+ +H VGP + L S Y N Q + ++++ G Sbjct 81 GFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGY 140 Query 1157 DPIHSLRVCVDTVR----------TNVYLAVFD--KNLYDKLVSSFLEMKSEKQVEQKIA 1204 + + + TVR V AV D + Y KL+ + + ++++ Sbjct 141 PLEDATHIALRTVRRFLEIHGETIEKVVFAVSDLEEATYQKLLPLYF----PRSLKEENR 196 Query 1205 EIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL-----YIDI 1259 +P E +P V +R+ + E+ EE + L +L + + Sbjct 197 SLPYLPADIGNAEGEPVVPERQIRISEKPGAPED--NQEEEDEGLGVDLSFIGSHAFARM 254 Query 1260 NGNLHPDSATLVSDI 1274 G++ ++ Sbjct 255 EGDIDKQRKLILQGQ 269 >sp|Q460N3|PAR15_HUMAN Protein mono-ADP-ribosyltransferase PARP15 OS=Homo sapiens OX=9606 GN=PARP15 PE=1 SV=2 Length=678 Score = 75.5 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 76/231 (33%), Gaps = 31/231 (13%) Query 1037 NVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGG-VAGALNKATNNAMQVESDDYIATNG 1095 N+ + + D++ + V+VN+ + L+ GGG ++ A + +Q E DD Sbjct 90 NLKLISGDVL----YIWADVIVNSVPMNLQLGGGPLSRAFLQKAGPMLQKELDD-RRRET 144 Query 1096 PLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGED------IQLLKSAYE--NFNQHEVLLA 1146 KVG + SG NL K LH V P N G + ++K + Sbjct 145 EEKVGNIFMTSGCNLDCKAVLHAVAPYWNNGAETSWQIMANIIKKCLTTVEVLSFSSITF 204 Query 1147 PLLSAGIFGADPIHSLRVCVDTVRT---------------NVYLAVFDKNLYDKLVSSFL 1191 P++ G ++ + V + + D + F Sbjct 205 PMIGTGSLQFPKAVFAKLILSEVFEYSSSTRPITSPLQEVHFLVYTNDDEGCQAFLDEFT 264 Query 1192 EMKSEKQVEQKIA-EIPKEEVKPFITESKPSVEQRKQDDKKIKACVEEVTT 1241 + +I + V +++ + + K + ++ T Sbjct 265 NWSRINPNKARIPMAGDTQGVVGTVSKPCFTAYEMKIGAITFQVATGDIAT 315 >sp|Q7JUR6|GDAP2_DROME Protein GDAP2 homolog OS=Drosophila melanogaster OX=7227 GN=Gdap2 PE=2 SV=1 Length=540 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 72/230 (31%), Gaps = 36/230 (16%) Query 1025 VNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQ 1084 + F + + I + D+ ++ + N ++ L ++ + N ++ Sbjct 56 RSPFPLCKDVNNRFVIWDGDMTT----LEVDAITNTSDETLTESNSISERIFAVAGNQLR 111 Query 1085 VESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENF-- 1138 E + + G + G+NL AK+ LH V P K L Y N Sbjct 112 EELSTTVK---ECRTGDVRITRGYNLPAKYVLHTVAPAYREKFKTAAENTLHCCYRNVLC 168 Query 1139 -----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT-------NVYLAVFDKNL---Y 1183 N H + L +SA + + + T+R V + + Y Sbjct 169 KAKELNLHTIALC-NISAHQKSFPADVAAHIALRTIRRYLDKCTLQVVILCVGSSERGTY 227 Query 1184 DKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIK 1233 + L + ++ + K + Q D++I+ Sbjct 228 EVLAPLYFPRDQLEE-----RSALWQLPKD--IGGEFGEPQHPDPDRQIR 270 >sp|Q8CCK0|H2AW_MOUSE Core histone macro-H2A.2 OS=Mus musculus OX=10090 GN=Macroh2a2 PE=1 SV=3 Length=372 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 35/187 (19%), Positives = 64/187 (34%), Gaps = 23/187 (12%) Query 1029 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNA--ANVYLKHGGGVAGALNKATNNAMQVE 1086 S L L + + +DI ++ +V+ A + LK G AL KA Sbjct 188 SKSLVLGQKLSLTQSDISH-IGSMRVEGIVHPTTAEIDLKEEIG--KALEKAGGKEFLET 244 Query 1087 SDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN------FN 1139 + + GPL+V + V L AK +H P + + L+ +N Sbjct 245 VKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDK 304 Query 1140 QHEVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVS 1188 + + + P +G + +V + + NVY +FD V Sbjct 305 KLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSSSSLKNVYFLLFDSESIGIYVQ 364 Query 1189 SFLEMKS 1195 ++ + Sbjct 365 EMAKLDT 371 >sp|Q9P0M6|H2AW_HUMAN Core histone macro-H2A.2 OS=Homo sapiens OX=9606 GN=MACROH2A2 PE=1 SV=3 Length=372 Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 35/186 (19%), Positives = 63/186 (34%), Gaps = 23/186 (12%) Query 1029 SGYLKLTDNVYIKNADIVEEAKKVKPTVVVNA--ANVYLKHGGGVAGALNKATNNAMQVE 1086 S L L + + +DI ++ +V+ A + LK G AL KA Sbjct 188 SKSLVLGQKLSLTQSDISH-IGSMRVEGIVHPTTAEIDLKEDIG--KALEKAGGKEFLET 244 Query 1087 SDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN------FN 1139 + + GPL+V + V L AK +H P + + L+ +N Sbjct 245 VKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDK 304 Query 1140 QHEVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVS 1188 + + + P +G + +V + + NVY +FD V Sbjct 305 KLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIYVQ 364 Query 1189 SFLEMK 1194 ++ Sbjct 365 EMAKLD 370 >sp|Q292F9|GDAP2_DROPS Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA15091 PE=3 SV=1 Length=542 Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 34/230 (15%), Positives = 72/230 (31%), Gaps = 36/230 (16%) Query 1025 VNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQ 1084 + F + + + I + D+ + + N ++ L ++ + N ++ Sbjct 58 RSPFPLSKDVNNRLVIWDGDMTT----LDVDAITNTSDETLTESNIISERILAVAGNQLR 113 Query 1085 VESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVN---KGEDIQLLKSAYENF-- 1138 E + + G + G+NL AK+ LH V P K L Y N Sbjct 114 EELSTNVK---ECRTGDVRITRGYNLPAKYVLHTVAPTYREKFKTAAENTLHCCYRNVLC 170 Query 1139 -----NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRT-------NVYLAV---FDKNLY 1183 N H + L +S + + + T+R V + ++ Y Sbjct 171 KAKELNLHTIALC-NISVHQKSFPADVAAHIALRTIRRYLDKCTLQVVILCVNSNERGTY 229 Query 1184 DKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIK 1233 + L + ++ + K + Q D++I+ Sbjct 230 EVLAPLYFPRDQLEE-----RSALWQLPKD--IGGEFGEPQHPDPDRQIR 272 >sp|Q9YLR1|POLN_HEVUS Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 3 (isolate Human/United States/US2) OX=509615 GN=ORF1 PE=3 SV=1 Length=1708 Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 24/209 (11%) Query 957 GKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMEL 1016 G P S EE +D S +V + G IV P + Sbjct 729 GLPYPTPPVSDIWVLPPPSEESHVDAASVPSVPEPAG-------LTSPIVLTPPPPPPPV 781 Query 1017 TPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALN 1076 + + D + + E +VNA+N + GGG+ A Sbjct 782 RKPATSPPPRTRRLLYTYPDGAKVYAGSLXES----DCDWLVNASNPGHRPGGGLCHAFY 837 Query 1077 KATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAY 1135 + A S ++I G L+ + L + +H V P+ ++ + L++AY Sbjct 838 QRFPEAF--YSTEFIMREG---------LAAYTLTPRPIIHAVAPDYRVEQNPKRLEAAY 886 Query 1136 EN-FNQHEVLLAPLLSAGIFGADPIHSLR 1163 ++ PLL +GI+ S Sbjct 887 RETCSRRGTAAYPLLGSGIYQVPVSLSFD 915 >sp|A0A0D2UG83|H2AY_CAPO3 Histone macroH2A1.1 OS=Capsaspora owczarzaki (strain ATCC 30864) OX=595528 GN=CAOG_004778 PE=1 SV=1 Length=368 Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 38/181 (21%), Positives = 67/181 (37%), Gaps = 23/181 (13%) Query 1032 LKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYI 1091 L L +Y+ N D+ E V+ VV+ N + G V GA+ A + E + Y+ Sbjct 191 LHLGQTLYVVNGDLTE----VRCDAVVHPTNGTMSFAGQVGGAIRAAAGAGVDAEVNSYM 246 Query 1092 ATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNV-NKGEDIQLLKSAYENF------NQHEV 1143 + + L+V + + SGHNL K +HV PN N L N + Sbjct 247 SEHSQLQVTKAAITSGHNLPSKWIVHVHSPNYSNAATATDALTQTIRNALTLADTKSIKT 306 Query 1144 LLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVFDKNLYDKLVSSFLE 1192 + P + +G + + + + VY +FD+ + + + Sbjct 307 IAFPSIGSGNNHFPKHIAAQTILQAISAYFMSIMSSSIKEVYFVLFDQESINVYNAELIN 366 Query 1193 M 1193 Sbjct 367 T 367 >sp|Q81862|POLN_HEVCH Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/China/HeBei/1987) OX=652674 GN=ORF1 PE=1 SV=1 Length=1693 Score = 64.4 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (38%), Gaps = 11/108 (10%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 1116 +VNA+NV + GGG+ A + + S G + + +H Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRD-------GAAAYT---LTPRPIIH 852 Query 1117 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 1163 V P+ + ++L++AY ++ PLL GI+ S Sbjct 853 AVAPDYRLEHNPKMLEAAYRETCSRLGTAAYPLLGTGIYQVPIGPSFD 900 >sp|P33424|POLN_HEVPA Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/Pakistan/Sar-55) OX=33774 GN=ORF1 PE=1 SV=2 Length=1693 Score = 64.0 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 1116 +VNA+NV + GGG+ A + + S G + + +H Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRD-------GAAAYT---LTPRPIIH 852 Query 1117 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 1163 V P+ + + L++AY ++ PLL GI+ S Sbjct 853 AVAPDYRLEHNPKRLEAAYRETCSRLGTAAYPLLGTGIYQVPIGPSFD 900 >sp|P29324|POLN_HEVBU Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/Burma) OX=31767 GN=ORF1 PE=1 SV=1 Length=1693 Score = 64.0 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 1116 +VNA+NV + GGG+ A + + S G + + +H Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRD-------GAAAYT---LTPRPIIH 852 Query 1117 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 1163 V P+ + + L++AY ++ PLL GI+ S Sbjct 853 AVAPDYRLEHNPKRLEAAYRETCSRLGTAAYPLLGTGIYQVPIGPSFD 900 >sp|Q6J8G2|POLN_HEVMG Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 3 (isolate Swine/United States/swUS1) OX=512345 GN=ORF1 PE=3 SV=1 Length=1708 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 25/109 (23%), Positives = 46/109 (42%), Gaps = 13/109 (12%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCL 1115 +VNA+N + GGG+ A + A ++I G L+ + L + + Sbjct 818 LVNASNPGHRPGGGLCHAFYQRFPEAF--YPTEFIMREG---------LAAYTLTPRPII 866 Query 1116 HVVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 1163 H V P+ ++ + L++AY ++ PLL +GI+ S Sbjct 867 HAVAPDYRVEQNPKRLEAAYRETCSRRGTAAYPLLGSGIYQVPVSLSFD 915 >sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=1a PE=1 SV=1 Length=4555 Score = 62.1 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 127/798 (16%), Positives = 261/798 (33%), Gaps = 145/798 (18%) Query 3037 PIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTP 3096 P GA A+++ +V I + Y ++ F Y++ V + ++ L++ ++ Sbjct 3240 PTGASSNVAALLMASVVVISMVLFYLYLLQ---IFKFYTNSVIMSFVIQLLTLLATTVST 3296 Query 3097 VYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWF 3156 + ++ + Y Y +++ ++ T L+ + I +++ Y Sbjct 3297 PLAVTVQLFVITYGY--------TNWILLTLSLLNLTVLLSTPVGITFVVIYGLYKAYTL 3348 Query 3157 FSNYLKRRVVFNGVSF---STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNK 3213 F++ + V G + +FE+ A TF L ++L SD+ + Q N Y + ++ Sbjct 3349 FTSSGQGCVYNEGGTIRFSGSFEQVANSTFPLTNASCVQLLSDLGITYQQLNVYASSRDR 3408 Query 3214 YKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPS 3273 + R A L + L+ S +LY+ S + Q+ R + Sbjct 3409 -----------NVRRLAQALLHRQLDSASEC---ILYE--GCSGNTITRQALQRIRQAVT 3452 Query 3274 GKVEGCMVQVT-CGTTTLNGLWLD---------DVVYCPRHVICTSEDML---NPNYEDL 3320 V + + NG+ L +++ C H I TS+ Y+ Sbjct 3453 VVVTPASQNLCKITSNQANGIGLSCTGTFFTSTEIITCA-HGIGTSDITAVHKGITYDCK 3511 Query 3321 LIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLAC 3380 + +N ++ V L V + + + + FV Q ++ Sbjct 3512 VKSINNDIAILITTTVNLSVQNIKLDSSFSQKSDNYQRNFVQFVSFVDQQNSDAVTINN- 3570 Query 3381 YNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 3440 + G GS + ++ + + G+H G D Sbjct 3571 ---------TVMLPSGHFFAIGTEAGESGSP-YTLNGNII------------GIHYGIDN 3608 Query 3441 EGNFY------GPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFN 3494 G++ G F T T + + A + A++ T+ N Sbjct 3609 AGSWMLASRPDGSFYVPATQHGNSAKVTFSTDAFAQQFPAIV--------TNKTSDQLVN 3660 Query 3495 LVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEF 3554 +A N D D V + LK L N + L D Sbjct 3661 EIAATNN-TAFELDTTD------------VSHLSNLLKHLKNNNETPK------SLSDYL 3701 Query 3555 TPFDVVRQCS---GVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAF 3611 V +Q S G T S V + +L++ + + + L N+ Sbjct 3702 PVAPVTQQTSVTVGQTLTSPVNNMQTALYTLMLVSEVITYI-------------LTPNSD 3748 Query 3612 LPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-----MVYMPASWVMRIMTW 3666 L + + SAF K + L ++ T + + + + + + I+++ Sbjct 3749 LSVLISMFVTSAFLKFGAS-KLFYNTEMLRNTITTFVVYRYTTLLIALVFSQYYLHILSY 3807 Query 3667 LDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLV--YKVYYG 3724 ++T + + V L+L+T R VY + + + +++ + Sbjct 3808 ALKLNTLVLT-----VIALTFLVTPLVLLTIRRVYYYSQNYLISCVFIISCFASHTYTLY 3862 Query 3725 NALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYC 3784 D + IIS T + L G + V P++ C++ +Y Sbjct 3863 ILTDTTVDFQTFIIS----EPIFSTLLCNLFIGFTLISVVPNPLYV-------CVVFMYI 3911 Query 3785 F-----LGYFCTCYFGLF 3797 LG+ TC+ + Sbjct 3912 LLDCEALGFIVTCFMASY 3929 Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 94/282 (33%), Gaps = 48/282 (17%) Query 931 EEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQ 990 +E+ C + + Y + + ++ T +L + E T+ Sbjct 1538 DEDMWCVKVTKNEFIESSYNYDVFVKALESKYHVTIGSLL---DCVEKPSTRSITPTLWT 1594 Query 991 QDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN--------VYIKN 1042 + N +Q I+ + P I + +T N V Sbjct 1595 AMRNFVNNDQEMQRILSGYITFNLTPLPPKVEIINDWLDNNATVTINNPFASNEGVTFAV 1654 Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQV-----------ESDDYI 1091 +I + +VNAAN L +G GV GA+ A + +++ SD Sbjct 1655 HNI-GAITTTEGEFIVNAANKQLNNGTGVTGAIFAAHDKELKLTQAIKALPTYGASDKLE 1713 Query 1092 ATNGPLKVGGSCVLSGHNL--AKHCLHVVGPNV----NKGEDIQL---------LKSAYE 1136 + ++ ++ +N A + LH P +K ++ L LK Y+ Sbjct 1714 SHQHVVQT----IIKNNNSTHAINILHAAAPIKVKCTSKNPEVLLAHNETAQSELKETYK 1769 Query 1137 NF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 1172 N+ + PL AG +G P+ SL +D +R Sbjct 1770 AIVDYAQLNKLTHIYLPLFGAGAYGHKPLDSLEAFLDAMRNR 1811 Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 24/97 (25%), Positives = 34/97 (35%), Gaps = 21/97 (22%) Query 4284 LASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFC 4343 + GG ++N H AI+ P + ++ G S C C DH C Sbjct 4455 VRIGGSRVSN------DH----IAISQVPVQTIGYLTYAGISVCRQCATKQDH-----TC 4499 Query 4344 DLKGKYVQIPTTCANDPVGF-----TLKNT-VCTVCG 4374 G +VQIP ++ L N CT C Sbjct 4500 QYAGYFVQIPREHVSNIFNLTDTPPCLHNKFTCTTCQ 4536 Score = 40.1 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 49/338 (14%), Positives = 90/338 (27%), Gaps = 59/338 (17%) Query 2136 DTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTN--SRIKAS 2193 Y + +V Y+ F T T+ T + IKA Sbjct 2554 SVFLAYIALLYSFSGHGIFTVVAYFTMLFARYYITSFINFCTSQLTATQVTQWFAAIKAK 2613 Query 2194 MPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALG-- 2251 + + + + Y+ +S ++ + ++ ++ Y+ Sbjct 2614 YTGIYESSQDRVLTVNVTGTNVPYI--VKYSTILTVTMYVAFMAFVWTVSTYAAQYTAGE 2671 Query 2252 ---------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT--GSIPCSV-CLSGLDSLD 2299 V L + Y ++ + C SI C + Sbjct 2672 RYDRPPYQTVFQKTLNVLGLTETVTYYYPYAS---LNEACAASTSILCRLGSPFNFHYPS 2728 Query 2300 TYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI 2359 Y + T+Q SS W LF F L ++ Sbjct 2729 DYTQVRTVQTDTSSPFW----------------LFIIFMPPSFLFIVLPWLILCTITP-- 2770 Query 2360 SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRAT 2419 +++ Q+ S ++ I F Y K H C TC+ +R+ Sbjct 2771 --------TVSIAQLLVPSIILNATIVF--IYIRRKFTGHC---CGPHTCIKHADISRSL 2817 Query 2420 RVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 + T+ + C HNW C N D+ Sbjct 2818 QFRPTSQIQHSLTFC-------GTLCAKHNWYCNNSDS 2848 >sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=rep PE=1 SV=1 Length=6872 Score = 62.1 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 128/802 (16%), Positives = 262/802 (33%), Gaps = 153/802 (19%) Query 3037 PIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTP 3096 P GA A+++ +V I + Y ++ F Y++ V + ++ L++ ++ Sbjct 3240 PTGASSNVAALLMASVVVISMVLFYLYLLQ---IFKFYTNSVIMSFVIQLLTLLATTVST 3296 Query 3097 VYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWF 3156 + ++ + Y Y +++ ++ T L+ + I +++ Y Sbjct 3297 PLAVTVQLFVITYGY--------TNWILLTLSLLNLTVLLSTPVGITFVVIYGLYKAYTL 3348 Query 3157 FSNYLKRRVVFNGVSF---STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNK 3213 F++ + V G + +FE+ A TF L ++L SD+ + Q N Y + ++ Sbjct 3349 FTSSGQGCVYNEGGTIRFSGSFEQVANSTFPLTNASCVQLLSDLGITYQQLNVYASSRDR 3408 Query 3214 YKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPS 3273 + R A L + L+ S +LY+ S + Q+ R + Sbjct 3409 -----------NVRRLAQALLHRQLDSASEC---ILYE--GCSGNTITRQALQRIRQAVT 3452 Query 3274 GKVEGCMVQVT-CGTTTLNGLWLD---------DVVYCPRHVICTSEDML---NPNYEDL 3320 V + + NG+ L +++ C H I TS+ Y+ Sbjct 3453 VVVTPASQNLCKITSNQANGIGLSCTGTFFTSTEIITCA-HGIGTSDITAVHKGITYDCK 3511 Query 3321 LIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLAC 3380 + +N ++ V L V + + + + FV Q ++ Sbjct 3512 VKSINNDIAILITTTVNLSVQNIKLDSSFSQKSDNYQRNFVQFVSFVDQQNSDAVTINN- 3570 Query 3381 YNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 3440 + G GS + ++ + + G+H G D Sbjct 3571 ---------TVMLPSGHFFAIGTEAGESGSP-YTLNGNII------------GIHYGIDN 3608 Query 3441 ----------EGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTL 3490 +G+FY P T T + + A + A++ T+ Sbjct 3609 AGSWMLASRPDGSFYVP----ATQHGNSAKVTFSTDAFAQQFPAIV--------TNKTSD 3656 Query 3491 NDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALL 3550 N +A N D D V + LK L N + L Sbjct 3657 QLVNEIAATNN-TAFELDTTD------------VSHLSNLLKHLKNNNETPK------SL 3697 Query 3551 EDEFTPFDVVRQCS---GVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLY 3607 D V +Q S G T S V + +L++ + + + L Sbjct 3698 SDYLPVAPVTQQTSVTVGQTLTSPVNNMQTALYTLMLVSEVITYI-------------LT 3744 Query 3608 ENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN-----MVYMPASWVMR 3662 N+ L + + SAF K + L ++ T + + + + + + Sbjct 3745 PNSDLSVLISMFVTSAFLKFGAS-KLFYNTEMLRNTITTFVVYRYTTLLIALVFSQYYLH 3803 Query 3663 IMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLV--YK 3720 I+++ ++T + + V L+L+T R VY + + + +++ + Sbjct 3804 ILSYALKLNTLVLT-----VIALTFLVTPLVLLTIRRVYYYSQNYLISCVFIISCFASHT 3858 Query 3721 VYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIM 3780 D + IIS T + L G + V P++ C++ Sbjct 3859 YTLYILTDTTVDFQTFIIS----EPIFSTLLCNLFIGFTLISVVPNPLYV-------CVV 3907 Query 3781 LVYCF-----LGYFCTCYFGLF 3797 +Y LG+ TC+ + Sbjct 3908 FMYILLDCEALGFIVTCFMASY 3929 Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 94/282 (33%), Gaps = 48/282 (17%) Query 931 EEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQ 990 +E+ C + + Y + + ++ T +L + E T+ Sbjct 1538 DEDMWCVKVTKNEFIESSYNYDVFVKALESKYHVTIGSLL---DCVEKPSTRSITPTLWT 1594 Query 991 QDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDN--------VYIKN 1042 + N +Q I+ + P I + +T N V Sbjct 1595 AMRNFVNNDQEMQRILSGYITFNLTPLPPKVEIINDWLDNNATVTINNPFASNEGVTFAV 1654 Query 1043 ADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQV-----------ESDDYI 1091 +I + +VNAAN L +G GV GA+ A + +++ SD Sbjct 1655 HNI-GAITTTEGEFIVNAANKQLNNGTGVTGAIFAAHDKELKLTQAIKALPTYGASDKLE 1713 Query 1092 ATNGPLKVGGSCVLSGHNL--AKHCLHVVGPNV----NKGEDIQL---------LKSAYE 1136 + ++ ++ +N A + LH P +K ++ L LK Y+ Sbjct 1714 SHQHVVQT----IIKNNNSTHAINILHAAAPIKVKCTSKNPEVLLAHNETAQSELKETYK 1769 Query 1137 NF------NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTN 1172 N+ + PL AG +G P+ SL +D +R Sbjct 1770 AIVDYAQLNKLTHIYLPLFGAGAYGHKPLDSLEAFLDAMRNR 1811 Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 24/97 (25%), Positives = 34/97 (35%), Gaps = 21/97 (22%) Query 4284 LASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFC 4343 + GG ++N H AI+ P + ++ G S C C DH C Sbjct 4455 VRIGGSRVSN------DH----IAISQVPVQTIGYLTYAGISVCRQCATKQDH-----TC 4499 Query 4344 DLKGKYVQIPTTCANDPVGF-----TLKNT-VCTVCG 4374 G +VQIP ++ L N CT C Sbjct 4500 QYAGYFVQIPREHVSNIFNLTDTPPCLHNKFTCTTCQ 4536 Score = 40.1 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 49/338 (14%), Positives = 90/338 (27%), Gaps = 59/338 (17%) Query 2136 DTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTN--SRIKAS 2193 Y + +V Y+ F T T+ T + IKA Sbjct 2554 SVFLAYIALLYSFSGHGIFTVVAYFTMLFARYYITSFINFCTSQLTATQVTQWFAAIKAK 2613 Query 2194 MPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALG-- 2251 + + + + Y+ +S ++ + ++ ++ Y+ Sbjct 2614 YTGIYESSQDRVLTVNVTGTNVPYI--VKYSTILTVTMYVAFMAFVWTVSTYAAQYTAGE 2671 Query 2252 ---------VLMSNLGMPSYCTGYREGYLNSTNVTIATYCT--GSIPCSV-CLSGLDSLD 2299 V L + Y ++ + C SI C + Sbjct 2672 RYDRPPYQTVFQKTLNVLGLTETVTYYYPYAS---LNEACAASTSILCRLGSPFNFHYPS 2728 Query 2300 TYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFI 2359 Y + T+Q SS W LF F L ++ Sbjct 2729 DYTQVRTVQTDTSSPFW----------------LFIIFMPPSFLFIVLPWLILCTITP-- 2770 Query 2360 SNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRAT 2419 +++ Q+ S ++ I F Y K H C TC+ +R+ Sbjct 2771 --------TVSIAQLLVPSIILNATIVF--IYIRRKFTGHC---CGPHTCIKHADISRSL 2817 Query 2420 RVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVNCDT 2457 + T+ + C HNW C N D+ Sbjct 2818 QFRPTSQIQHSLTFC-------GTLCAKHNWYCNNSDS 2848 >sp|Q9WC28|POLN_HEVHY Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/India/Hyderabad) OX=512346 GN=ORF1 PE=1 SV=1 Length=1693 Score = 61.7 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 11/108 (10%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 1116 +VNA+NV GGG+ A + + G + + +H Sbjct 803 LVNASNVDHCPGGGLCHAFYQRYPASFDAACFVMRD-------GAAAYT---LTPRPIIH 852 Query 1117 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 1163 V P+ + + L++AY ++ PLL GI+ S Sbjct 853 RVAPDYRLEHNPKRLEAAYRETCSRLGTAAYPLLGTGIYQVPIGPSFD 900 >sp|Q03495|POLN_HEVME Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 2 (isolate Human/Mexico) OX=31768 GN=ORF1 PE=3 SV=1 Length=1691 Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 17/127 (13%) Query 1039 YIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLK 1098 I I E + T +VNA+N + GGG+ A + ++ ++ +G Sbjct 787 KIYVGSIFES----ECTWLVNASNAGHRPGGGLCHAFFQRYPDSFDA--TKFVMRDG--- 837 Query 1099 VGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGA 1156 L+ + L + +H V P+ + + L++AY + PLL AGI+ Sbjct 838 ------LAAYTLTPRPIIHAVAPDYRLEHNPKRLEAAYRETCARRGTAAYPLLGAGIYQV 891 Query 1157 DPIHSLR 1163 S Sbjct 892 PVSLSFD 898 >sp|Q04610|POLN_HEVMY Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/Myanmar/HEVNE8L) OX=31769 GN=ORF1 PE=1 SV=1 Length=1693 Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 11/108 (10%) Query 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 1116 +VNA+NV + GGG+ A + + S G + + +H Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRD-------GAAAYT---LTPRPIIH 852 Query 1117 VVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 1163 V P+ + + L++AY ++ LL GI+ S Sbjct 853 AVAPDYRLEHNPKRLEAAYRETCSRLGTAAYSLLGTGIYQVPIGPSFD 900 >sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1 Length=912 Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 24/119 (20%) Query 1041 KNADIVEEAKK--VKPTVVVNAANVYLK-HGGGVAGALNKATNNAMQVESDDYIATNGPL 1097 DI + + + V+ NA N LK GGGV A+ KA + E+ + N L Sbjct 527 FVGDITKLRSEGGLHCNVIANATNWRLKPGGGGVNAAIFKAAGPDL--ETATRVRAN-TL 583 Query 1098 KVGGSCVLSGHNLA--------KHCLHVVGPNVNKGEDIQL----------LKSAYENF 1138 G + V+ + H +HV+GPN+N L L+ AY + Sbjct 584 LPGKAVVVPLPSTCPLHNAEGITHVIHVLGPNMNPNRPDNLNNDYTKGCKTLREAYTSL 642 >sp|Q9IVZ9|POLN_HEVCT Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 4 (isolate Human/China/T1) OX=509627 GN=ORF1 PE=3 SV=1 Length=1707 Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (42%), Gaps = 13/113 (12%) Query 1053 KPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNL-A 1111 + T +VNA+N + GGG+ A + + ++I ++G + + L Sbjct 813 ECTWLVNASNPGHRPGGGLCHAFYQRFPESFDPA--EFIMSDG---------FAAYTLTP 861 Query 1112 KHCLHVVGPNVNKGEDIQLLKSAYEN-FNQHEVLLAPLLSAGIFGADPIHSLR 1163 + +H V P+ + + L++AY ++ PLL GI+ S Sbjct 862 RPIIHAVAPDYRVEHNPKRLEAAYRETCSRRGTAAYPLLGVGIYRVPVGLSFD 914 >sp|Q54PT1|GDAP2_DICDI Protein GDAP2 homolog OS=Dictyostelium discoideum OX=44689 GN=gdap2 PE=3 SV=1 Length=568 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 77/236 (33%), Gaps = 35/236 (15%) Query 1027 SFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVE 1086 F ++ + + DI + +V + + L ++ + K + M + Sbjct 48 QFKIDTEINSRICLWMGDICN----LNTDTIVYSNSKTLTESDTISDKIFKYGGSEMMND 103 Query 1087 SDDYIATNGPLKVGGSCVLSGHNLA-KHCLHVVGPNVNK---GEDIQLLKSAYENFN--- 1139 I NG + G S + SG NL + +H V P N L S Y + Sbjct 104 ----IQKNGECRYGESIITSGGNLPSRFVVHTVCPTYNPKYLSAAENALNSCYRSAFHLS 159 Query 1140 ---QHEVLLAPLLSAGIFGADPIHSLRVCVDTVR-----------TNVYLAVF---DKNL 1182 + + + L + + + + T+R V LA+ D L Sbjct 160 MDVKSKSISFSTLHSEKRQFPSVGGCHIALRTIRRFLEKPFSKSFEKVILAINTFEDLRL 219 Query 1183 YDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVEE 1238 Y++++ + + E K ++I + ++ + + + E Sbjct 220 YEQMLPIYFPRNQQ---ELKFSQISLPKDVGDENGEAIVESRKIRIIETPSTIIRE 272 >sp|P08411|POLN_SFV Polyprotein P1234 OS=Semliki forest virus OX=11033 PE=1 SV=2 Length=2432 Score = 54.0 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 43/231 (19%), Positives = 73/231 (32%), Gaps = 40/231 (17%) Query 1034 LTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIAT 1093 + +K ADI VVNAAN G GV A+ K +A Sbjct 1336 CAPSYRVKRADI----ATCTEAAVVNAANARGTVGDGVCRAVAKKWPSAF---------K 1382 Query 1094 NGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQ---LLKSAYENFNQH------EVL 1144 VG + + +H V PN + + + L + Y + Sbjct 1383 GAATPVGTIKTVMCGSYP--VIHAVAPNFSATTEAEGDRELAAVYRAVAAEVNRLSLSSV 1440 Query 1145 LAPLLSAGIFGADPIH------SLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 PLLS G+F L +D +V + DK+ K+ ++ Sbjct 1441 AIPLLSTGVFSGGRDRLQQSLNHLFTAMDATDADVTIYCRDKSWEKKI---------QEA 1491 Query 1199 VEQKIAEIPKEEVKPFITESKPSVEQRKQDDKKIKACVE-EVTTTLEETKF 1248 ++ + A + T+ +K + + + + E TKF Sbjct 1492 IDMRTAVELLNDDVELTTDLVRVHPDSSLVGRKGYSTTDGSLYSYFEGTKF 1542 >sp|Q5HTX9|PGLB_CAMJR Undecaprenyl-diphosphooligosaccharide--protein glycotransferase OS=Campylobacter jejuni (strain RM1221) OX=195099 GN=pglB PE=1 SV=1 Length=713 Score = 45.1 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 80/250 (32%), Gaps = 33/250 (13%) Query 3553 EFTPFDVVRQCS-----GVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLY 3607 EF + Q G F + I G H L+ S L +L ++LY Sbjct 38 EFNEYFFNNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLS-------TLTYWLY 90 Query 3608 ENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWL 3667 + F I+ MS F V ++P + + M + Sbjct 91 KITPFSFESIILYMSTFLSSLV----------VIPIILLANEYKRPLMGFVAALLASVAN 140 Query 3668 DMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNAL 3727 + ++SG+ D ++ + +L M + D + + +Y +Y ++ Sbjct 141 SYYNRTMSGYYDTDMLVIVLPMFILFFMVRMILKKDFFSLIAL--PLFIGIYLWWYPSSY 198 Query 3728 DQAISMWALIISVT--------SNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCI 3779 +++ L + T Y V+ + + L+ F I F L+ Sbjct 199 TLNVALIGLFLIYTLIFHRKEKIFYIAVILSSLTLSNIAWFYQSAIIVILFALF-ALEQK 257 Query 3780 MLVYCFLGYF 3789 L + +G Sbjct 258 RLNFMIIGIL 267 >sp|Q0P9C8|PGLB_CAMJE Undecaprenyl-diphosphooligosaccharide--protein glycotransferase OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) OX=192222 GN=pglB PE=1 SV=1 Length=713 Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 80/250 (32%), Gaps = 33/250 (13%) Query 3553 EFTPFDVVRQCS-----GVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLY 3607 EF + Q G F + I G H L+ S L +L ++LY Sbjct 38 EFNEYFFNNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLS-------TLTYWLY 90 Query 3608 ENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWL 3667 + F I+ MS F V ++P + + M + Sbjct 91 KITPFSFESIILYMSTFLSSLV----------VIPIILLANEYKRPLMGFVAALLASVAN 140 Query 3668 DMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNAL 3727 + ++SG+ D ++ + +L M + D + + +Y +Y ++ Sbjct 141 SYYNRTMSGYYDTDMLVIVLPMFILFFMVRMILKKDFFSLIAL--PLFIGIYLWWYPSSY 198 Query 3728 DQAISMWALIISVT--------SNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCI 3779 +++ L + T Y V+ + + L+ F I F L+ Sbjct 199 TLNVALIGLFLIYTLIFHRKEKIFYIAVILSSLTLSNIAWFYQSAIIVILFALF-ALEQK 257 Query 3780 MLVYCFLGYF 3789 L + +G Sbjct 258 RLNFMIIGIL 267 >sp|A8GUJ3|ATP6_RICB8 ATP synthase subunit a OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=atpB PE=3 SV=1 Length=242 Score = 41.6 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 26/156 (17%), Positives = 49/156 (31%), Gaps = 19/156 (12%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAM-SAFAMMFVKHKHAFLCLF-- 3639 ++ T+ +L F + + + FA+ I+ + FVKH FL LF Sbjct 87 VIFTLFVFILFCNLFGMIPYGFTVTSHIIITFALAILVFLMVTIVGFVKHGMHFLSLFLP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLI 3693 L P + + F + PAS +R+ ++ A ++ Sbjct 147 HGTPLWLAPLMIIIELFTYLARPASLSLRLAA----------NMMAGHILLKVIASFVIT 196 Query 3694 LMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQ 3729 LM + + + + Y L Sbjct 197 LMIYLKFLPIPLMVILIGFEIFVAILQAYIFTILSC 232 >sp|B9KDD4|PGLB_CAMLR Undecaprenyl-diphosphooligosaccharide--protein glycotransferase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) OX=306263 GN=pglB PE=1 SV=1 Length=712 Score = 42.8 bits (99), Expect = 0.098, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 67/194 (35%), Gaps = 16/194 (8%) Query 3592 LVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFN 3651 L S+ +L ++LY F I+ MSAF F L ++P + + Sbjct 77 LSYFGSSLSTLTYWLYSILPFSFESIILYMSAF----------FASLIVVPIILIAREYK 126 Query 3652 MVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTL 3711 + + + ++SG+ D ++ +++L+ T+ D L Sbjct 127 LTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFT--LLL 184 Query 3712 MNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFI 3771 V ++Y +Y ++ +M I + Y+ V + + + + + Sbjct 185 SPVFIMIYLWWYPSSYSLNFAM----IGLFGLYTLVFHRKEKIFYLTIALMIIALSMLAW 240 Query 3772 TGNTLQCIMLVYCF 3785 ++L F Sbjct 241 QYKLALIVLLFAIF 254 >sp|Q1RGZ3|ATP6_RICBR ATP synthase subunit a OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=atpB PE=3 SV=1 Length=242 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 26/156 (17%), Positives = 49/156 (31%), Gaps = 19/156 (12%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAM-SAFAMMFVKHKHAFLCLF-- 3639 ++ T+ +L F + + + FA+ I+ + FVKH FL LF Sbjct 87 VIFTLFVFILFCNLFGMIPYGFTVTSHIIITFALAILVFLMVTIVGFVKHGMHFLSLFLP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLI 3693 L P + + F + PAS +R+ ++ A ++ Sbjct 147 HGTPLWLAPLMIIIELFTYLARPASLSLRLAA----------NMMAGHILLKVIASFVVT 196 Query 3694 LMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQ 3729 LM + + + + Y L Sbjct 197 LMIYLKFLPIPLMVILIGFEIFVAILQAYIFTILSC 232 >sp|Q5A1V3|POA1_CANAL ADP-ribose 1''-phosphate phosphatase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=POA1 PE=3 SV=2 Length=156 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 30/162 (19%) Query 1038 VYIKNADIVEEAKKVKPTVVV-NAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGP 1096 + D+ A V++ +A N + GGG+A A+ + E Y N Sbjct 2 IQYIKGDLFTHAIPAGKKVILAHACNTHGSWGGGIA-AVFRKKFPKSNNEYSQYCHKNSN 60 Query 1097 LKVGGSCVLSGHNL---------------AKHCLHVVGPNVNKGEDIQLLKSA--YENFN 1139 L +G S ++ + +H K L + Y+ Sbjct 61 L-LGTSFIIESDQPNILIACLFTSDFNQTPEQIVH-----FTKQSIADLARKVSDYKEVE 114 Query 1140 QHE---VLLAPLLSAGIFGADPI--HSLRVCVDTVRTNVYLA 1176 + + + P ++AGIFG S D + NVY+ Sbjct 115 KCDGKVAINMPKINAGIFGVPWEDTESALQEFDNLHFNVYVI 156 >sp|Q4FRM3|RS20_PSYA2 Small ribosomal subunit protein bS20 OS=Psychrobacter arcticus (strain DSM 17307 / VKM B-2377 / 273-4) OX=259536 GN=rpsT PE=3 SV=1 Length=88 Score = 37.4 bits (85), Expect = 0.29, Method: Composition-based stats. Identities = 18/82 (22%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query 3956 AFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQ--RK----LEKMADQAM 4009 A A++ ++ + +++ K ++ A + D DAA + +K L++MAD+ + Sbjct 7 ARKRARQNTKRRQNSASQRSMVRTYLKRVDAAIAAKDYDAATEAYKKAVPVLDRMADKGI 66 Query 4010 TQMYKQARSEDKRAKVTSAMQT 4031 K AR + + K +Q Sbjct 67 LHKNKAARRKSRLNKTIKGLQA 88 >sp|B0ULY1|ATP6_METS4 ATP synthase subunit a OS=Methylobacterium sp. (strain 4-46) OX=426117 GN=atpB PE=3 SV=1 Length=251 Score = 40.1 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 59/177 (33%), Gaps = 20/177 (11%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM-FVKHKHAFLCLFLL 3641 L+ ++ +LVL F + + + F + ++ + + F+ H FL LF+ Sbjct 90 LVFSLFMFVLVLNLFGMIPYAFTVTSHIIVTFMLALVVILTVVIYGFMAHGVHFLDLFVP 149 Query 3642 PSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVY 3701 P + WL + ++ + S + ++ Sbjct 150 PG-------------------VPGWLKPLIVAIEVVSFISRPISLSVRLFANMLAGHIAL 190 Query 3702 DDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGI 3758 A V L+ AL AI+ ++++V Y T ++L+ + Sbjct 191 KIFAGFVPALLAAGIWGILSPLPLALSVAITALEMLVAVLQAYVFATLTSIYLSDAL 247 >sp|Q03QN6|TIG_LEVBA Trigger factor OS=Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947) OX=387344 GN=tig PE=3 SV=1 Length=436 Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 63/211 (30%), Gaps = 15/211 (7%) Query 819 APTKVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADA 878 A KVT + ++ ++DE +D + + +V + D Sbjct 233 ATFKVTIHEVKEKQLPELDD-EFAKDVDEDVDSLEELEAKTKDRLKEQKVTAAHDAIEDE 291 Query 879 VIKTLQPVSELLTPLGIDLDEWSMATY--YLFDESGEFKLASHMYCSFYPPDEDEEEGDC 936 I +E+ L + YL + + + MY ED+ Sbjct 292 AISEAVDNAEIAAVPEAMLKDDIDRQMDQYLANMQ-QQGIEPKMYFQLTGTTEDDLRKQF 350 Query 937 EEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDD-DSQQTVGQQDGSE 995 + + LE + ++P E++ + D SQ + + Sbjct 351 ADGAEKRIKTNLV----------LEAVVEAEKIEPSEDEVAAEVKDLASQYGMEESAVRS 400 Query 996 DNQTTTIQTIVEVQPQLEMELTPVVQTIEVN 1026 ++ + ++ +++ Q + + Sbjct 401 ALSDDMLKHDIAIKSAVDLIADSAKQDKKKD 431 >sp|Q11KH9|ATP6_CHESB ATP synthase subunit a OS=Chelativorans sp. (strain BNC1) OX=266779 GN=atpB PE=3 SV=1 Length=249 Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 13/109 (12%) Query 3570 SAVKRTIKGTHHWLLLTILTSLLVLVQST----QWSLFFFLYENAFLPFAMGIIAMSAFA 3625 +++ R G+H + SL + V + FF + + + FA+ ++ + Sbjct 70 ASMLRDAAGSHGMRFFPFVFSLFMFVLVANLLGLFPYFFTVTSHIVVTFALALLVIGTVL 129 Query 3626 MMFV-KHKHAFLCLF--------LLPSLATVAYFNMVYMPASWVMRIMT 3665 + KH FL LF LLP + + + + P S +R+ Sbjct 130 VYGFWKHGFGFLKLFVPEGVPGVLLPLVVLIEVISFLSRPISLSVRLFA 178 >sp|Q03F26|TIG_PEDPA Trigger factor OS=Pediococcus pentosaceus (strain ATCC 25745 / CCUG 21536 / LMG 10740 / 183-1w) OX=278197 GN=tig PE=3 SV=1 Length=435 Score = 39.7 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 25/196 (13%), Positives = 61/196 (31%), Gaps = 15/196 (8%) Query 822 KVTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIK 881 KV + E+ ++DE +D + + K ++ + ++ Sbjct 236 KVKIHEIKTKELPELDD-EFAKDVDEDVDSLEDLKVKTKEEIKSRKIQAASDAKETEAVQ 294 Query 882 TLQPVSELLTPLGIDLDEWSMATY--YLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEE 939 +E+ L+E YL + + ++ MY ED+ Sbjct 295 AAVDNAEIAEIPEAMLNEDVDRQVNQYLANMQ-QQGISPEMYFQLTGSSEDQLRDQLR-- 351 Query 940 EFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQ-TVGQQDGSEDNQ 998 E LE + + P +++ + D ++Q + ++ Sbjct 352 --------EGAENRVKTTLVLEAIVEAEKIDPSDDEVAAEIKDLAEQYGMEEKAVRSALS 403 Query 999 TTTIQTIVEVQPQLEM 1014 I+ V ++ +E+ Sbjct 404 EDMIKHDVAIKSAVEL 419 >sp|Q2KBW1|ATP6_RHIEC ATP synthase subunit a OS=Rhizobium etli (strain CFN 42 / ATCC 51251) OX=347834 GN=atpB PE=3 SV=1 Length=250 Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 20/92 (22%), Positives = 38/92 (41%), Gaps = 9/92 (10%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM-FVKHKHAFLCLF-- 3639 L+ ++ +L + FF + + FA+ I+ +S + F KH FL +F Sbjct 87 LVFSLFMFVLTANLLGMFPYFFTITSQIIVTFALAILVISTVLIYGFYKHGFHFLNVFVP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMT 3665 LLP + + + + P S +R+ Sbjct 147 SGVPGILLPLVVAIEIISFLSRPISLSVRLFA 178 >sp|Q3KNA1|MRGB2_MOUSE Mas-related G-protein coupled receptor member B2 OS=Mus musculus OX=10090 GN=Mrgprb2 PE=2 SV=2 Length=338 Score = 39.3 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 66/203 (33%), Gaps = 12/203 (6%) Query 3611 FLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMV 3670 FL M A + + + +LC + + ++ + ++ ++ + Sbjct 61 FLGIRMHTNAFTVYILNLAMADFLYLCSQF---VICLLIAFYIFYSIDINIPLVLYVVPI 117 Query 3671 DTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRV-----WTLMNVLTLVYKVYYGN 3725 LSG + + + ++ + R + W + +L L+ G Sbjct 118 FAYLSGLSILSTISIERCLSVIWPIWYRCKRPRHTSAITCFVLWVMSLLLGLLEGKACGL 177 Query 3726 ALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPI----FFITGNTLQCIML 3781 + S W V +N VV + + + +C T+ +L Sbjct 178 LFNSFDSYWCETFDVITNIWSVVFFGVLCGSSLTLLVRIFCGSQRIPMTRLYVTITLTVL 237 Query 3782 VYCFLGYFCTCYFGLFCLLNRYF 3804 V+ G Y+ L+ ++ ++ Sbjct 238 VFLIFGLPFGIYWILYQWISNFY 260 >sp|Q91ZC6|MRGA6_MOUSE Mas-related G-protein coupled receptor member A6 OS=Mus musculus OX=10090 GN=Mrgpra6 PE=2 SV=2 Length=301 Score = 38.6 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 57/173 (33%), Gaps = 17/173 (10%) Query 3644 LATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDD 3703 + T + N +++ + R++ ++G + + + ++ + R + Sbjct 69 ILTFSSPNSIFINCLYTFRVL-------LYIAGLNMLSAISIERCLSVMCPIWYRCHRPE 121 Query 3704 GARR-----VWTLMNVLTLVYKVYYG-----NALDQAISMWALIISVTSNYSGVVTTVMF 3753 +W L +L ++Y+ + G D + + + VV V Sbjct 122 HTSTVMCAMIWVLSLLLCILYRYFCGFLDTKYEDDYGCLAMNFLTTAYLMFLFVVLCVSS 181 Query 3754 LARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRL 3806 LA C T+ +LV+ G C Y+ L + F + Sbjct 182 LALLARLFCGAGRMKLTRLYVTITLTLLVFLLCGLPCGFYWFLLSKIKNVFSV 234 >sp|Q2FQC0|KUP_METHJ Probable potassium transport system protein Kup OS=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) OX=323259 GN=kup PE=3 SV=1 Length=611 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 22/133 (17%), Positives = 45/133 (34%), Gaps = 8/133 (6%) Query 3021 VDAVNLLTNMFTPLIQPIGALDISASIV--------AGGIVAIVVTCLAYYFMRFRRAFG 3072 +++ T + P+ +D ++ + ++ I V C+ F R Sbjct 313 SGIFSIIYQAITTHLLPMLPVDYTSDELRTQIYINTVNWLLCIAVICVLLIFQYSERLAS 372 Query 3073 EYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMF 3132 Y V + + L G+ ++ L Y + VS + H ++ + Sbjct 373 AYGLAVTGTMSITGSFMIAIFLQRRKYLYMGIALIVTLVDITYFLSTVSKITHGGYLSLV 432 Query 3133 TPLVPFWITIAYI 3145 +PF I I Y Sbjct 433 IAAIPFTIVIIYT 445 >sp|P15576|NU1M_LEITA NADH-ubiquinone oxidoreductase chain 1 OS=Leishmania tarentolae OX=5689 GN=ND1 PE=3 SV=1 Length=313 Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 34/253 (13%), Positives = 83/253 (33%), Gaps = 36/253 (14%) Query 3607 YENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVA----YFNMVY---MPASW 3659 + P GI F + + +L ++ + + YF + + + + Sbjct 45 FFGILTPITDGIKLFIKFIIFVISFDIIYLIGAMIITACCIFLGWFYFPIGFILLLDTGF 104 Query 3660 VMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNVL-TLV 3718 + +M + + + S F + C +++S V L M ++ L + +L Sbjct 105 TLTVMLCVHVFCSMFSTFFV-GCFLFSSCFVYLSAMRTMFFSIISESGIFLLYTTIYSLD 163 Query 3719 YKVYYGNALDQ----AISMWALIISVTSNYSGVVTTVMFL----------ARGIVFMCVE 3764 Y ++G I+ + + + + V + L + + + E Sbjct 164 YFSFFGIKDVCVGQIYITNFYIAGVLFISVFWVSMLLDGLKLPFDYMECESELVAGLITE 223 Query 3765 YCPIFFITGNTLQC-------IMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVST 3817 FF+ + L+ ++ G C+ + L+ +F + Y ++T Sbjct 224 LSGFFFVLYSVLEINHILLTTLLFASLCFGGLFICFKAILILIFGFFYPRVIGYRLKITT 283 Query 3818 QE------FRYMN 3824 + YM Sbjct 284 AQAFILIFLFYMC 296 >sp|A1SSX2|RNFD_PSYIN Ion-translocating oxidoreductase complex subunit D OS=Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 GN=rnfD PE=3 SV=1 Length=350 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 28/190 (15%), Positives = 60/190 (32%), Gaps = 21/190 (11%) Query 3502 YEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVR 3561 + T D + + G+++ ++++ L NG I S + + Sbjct 163 FTGSTLDGYSVAQLSVSIDGLSMATPLNTVRDALHNGFTVTEIFNSVQFK-----ASSWQ 217 Query 3562 QCS---GVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSL--------FFFLYENA 3610 Q G + K HW + + + ++ F L+ A Sbjct 218 QIYWINGAFLAGGLILLFKRIVHWHIPMSFLLGIGIFSFIAFAYSPDLNAPPLFHLFSGA 277 Query 3611 FLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMV 3670 + A I++ A VK + + LL + V N+ P + ++ L + Sbjct 278 TMLGAFFILSDPVSASTTVKGRILYA---LLIAFIVVIIRNVGGYPDAVAFAVL--LGNM 332 Query 3671 DTSLSGFKLK 3680 L + + Sbjct 333 CVPLIDYYTQ 342 >sp|P12428|BROWN_DROME Protein brown OS=Drosophila melanogaster OX=7227 GN=bw PE=1 SV=1 Length=675 Score = 38.6 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 18/95 (19%), Positives = 36/95 (38%), Gaps = 1/95 (1%) Query 3039 GALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVY 3098 +S ++ + A + RR GE ++ ++ + ++SF + Y Sbjct 454 SIFMLSNEMIFTFSYGVTYIFPAALPI-IRREVGEGTYSLSAYYVALVLSFVPVAFFKGY 512 Query 3099 SFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFT 3133 FL +Y+ IY F L + FL + + Sbjct 513 VFLSVIYASIYYTRGFLLYLSMGFLMSLSAVAAVG 547 >sp|Q9V4C8|HCF_DROME Host cell factor OS=Drosophila melanogaster OX=7227 GN=Hcf PE=1 SV=2 Length=1500 Score = 38.6 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 56/314 (18%), Positives = 106/314 (34%), Gaps = 61/314 (19%) Query 1903 DNSYFTEQPIDLVPN--------------QPYPNASFDNFKFV------CDNIKFADDLN 1942 YF ++P+ L PN Q P +F K N A + Sbjct 687 GKQYFIQKPLTLAPNVQLQFVKTSGGMTVQTLPKVNFTASKGTPPHGISIANPHLASGIT 746 Query 1943 QLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKAT 2002 Q+ G P S+ K P ++G+V+ K +P G KL+ K +N Sbjct 747 QIQGSTVPGSQIQK----PIVSGNVL----KLVSPHTMAGGKLIMK-----NSNILQMGK 793 Query 2003 YKPNTWCIRCLW----------------------STKPVETSNSFDVLKSEDAQGMDNLA 2040 PN + + + + V TS A G + ++ Sbjct 794 VTPNVMGGKPAFVITNKQGTPLGNQQIIIVTTGGNVRSVPTSTVMTS-AGGSASGTNIVS 852 Query 2041 CEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTDLM---A 2097 + + ++ + QK ++ N +++ +I A++S+ ++ T + A Sbjct 853 IVNSTSTTPSPLQALSGQKTLIS-NQSGVKMLRNISSVQASSSMAFGQKQSGTPIHQKTA 911 Query 2098 AYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTTNIV 2157 Y+ ++T+ N G K + G ++ NS T + K F+ + V Sbjct 912 LYIGGKAVTVMSTNTSMAASGNKVMVLPGTSSNNSPATTTALSARKSFVFNAGGSPRT-V 970 Query 2158 TRCLNRVCTNYMPY 2171 T + +P Sbjct 971 TLATKSINAKSIPQ 984 >sp|F1QGD2|ZDH24_DANRE Probable palmitoyltransferase ZDHHC24 OS=Danio rerio OX=7955 GN=zdhhc24 PE=2 SV=1 Length=295 Score = 37.8 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 25/183 (14%), Positives = 57/183 (31%), Gaps = 9/183 (5%) Query 2220 SPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNSTNVTIA 2279 S ++ L +F+L ++ + ++ + LG + G+R Y + Sbjct 55 STIWTGLHLFAQYFMLGNITWNASLFVKTNPSIRGVFLGGDTLGQGWRYCY--NCETHTP 112 Query 2280 TYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILFTRFFY 2339 C+ C+VC+ D + + F + A +L+ Sbjct 113 PRCSHCYDCNVCVLRRDHHCVFFGQCVGFH-------NYRYFLTCLLFMWAGLLYAVVMN 165 Query 2340 VLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVWKSYVH 2399 I++ ++ +V + W+M + + A A + + H Sbjct 166 AEVFIFILKEGVTFHSVMLLLVPWIMLVSGQVTTRAFAFAFIADTCVVGFLLVAAFLFFH 225 Query 2400 VVD 2402 V Sbjct 226 VAL 228 >sp|B3PRF6|ATP6_RHIE6 ATP synthase subunit a OS=Rhizobium etli (strain CIAT 652) OX=491916 GN=atpB PE=3 SV=1 Length=250 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 19/92 (21%), Positives = 37/92 (40%), Gaps = 9/92 (10%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM-FVKHKHAFLCLF-- 3639 L+ ++ +L + FF + + FA+ I+ + + F KH FL +F Sbjct 87 LVFSLFMFVLTANLLGMFPYFFTVTSQIIVTFALAILVIGTVLVYGFYKHGFHFLNVFVP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMT 3665 LLP + + + + P S +R+ Sbjct 147 SGVPGILLPLVVAIEIISFLSRPISLSVRLFA 178 >sp|B5ZS16|ATP6_RHILW ATP synthase subunit a OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) OX=395492 GN=atpB PE=3 SV=1 Length=250 Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 19/92 (21%), Positives = 38/92 (41%), Gaps = 9/92 (10%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM-FVKHKHAFLCLF-- 3639 L+ ++ +L + FF + + FA+ I+ + + F KH FL +F Sbjct 87 LVFSLFMFVLTANLLGMFPYFFTITSQIIVTFALAILVIGTVLVYGFYKHGFHFLNVFVP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMT 3665 LLP + ++ + + P S +R+ Sbjct 147 SGVPGILLPLVVSIEIISFLSRPISLSVRLFA 178 >sp|Q1QA59|RS20_PSYCK Small ribosomal subunit protein bS20 OS=Psychrobacter cryohalolentis (strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 / K5) OX=335284 GN=rpsT PE=3 SV=1 Length=88 Score = 35.1 bits (79), Expect = 2.2, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 9/84 (11%) Query 3956 AFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQ--RK----LEKMADQAM 4009 A A++ ++ + +++ K ++ A + D DAA + +K L++MAD+ + Sbjct 7 ARKRARQNTKRRQNSASQRSMVRTYLKRVDAAIAAKDYDAATEAYKKAVPVLDRMADKGI 66 Query 4010 TQMYKQARSEDKRAKVTSAMQTML 4033 K AR +++++ ++ +L Sbjct 67 LHKNKAAR---RKSRLNKTIKGLL 87 >sp|Q49429|P200_MYCGE Protein P200 OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37) OX=243273 GN=MG386 PE=3 SV=1 Length=1616 Score = 38.2 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 25/127 (20%), Positives = 37/127 (29%), Gaps = 3/127 (2%) Query 901 SMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPL 960 Y FDE + F P E + E E + D Q +PL Sbjct 1290 VDEPNYDFDEPNYEIESKPSEPQFEPQVEQQPGEAVFEPSAEAKFDSPVESVQDSQPEPL 1349 Query 961 EFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVV 1020 + E + + D Q Q+ D + ++TI E Q E E+ Sbjct 1350 LEEVQTQPEIQPVESQPEATFDTVQPEQTPQEAKFD---SPVETIQEPQVSSEPEVVVQP 1406 Query 1021 QTIEVNS 1027 E Sbjct 1407 NFEERKP 1413 >sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 OS=Trypanosoma brucei brucei OX=5702 GN=ND5 PE=3 SV=1 Length=590 Score = 37.8 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 22/187 (12%), Positives = 56/187 (30%), Gaps = 14/187 (7%) Query 3618 IIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGF 3677 ++ +M + + FL+ S+ Y+ + + WL V + F Sbjct 25 FLSFWLSLVMIIFIVLCMIFSFLMVSVCLYGYYYYDFCLILMLDFCFIWLTYVCSGFYMF 84 Query 3678 KLKDCVMYASAVVLLILMTARTVYDDGA-----RRVWTLM-NVLTLVYKVYYGNALDQAI 3731 + + ++ ++ + N+ L Y + + Sbjct 85 IML-LINMVFCFIVFYAFYYMYFDMLLGRFLIIFWIFVVCMNLFILSYDFLTAYCGWELL 143 Query 3732 SMWALIISVTSNYSGVV----TTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLG 3787 +++ + Y F+ + + + I F++ M + FL Sbjct 144 GLFSFFLISYFWYRFFALKFGFKAFFIGKIGDVLLIFAFSIIFLSNGF---CMTTFYFLN 200 Query 3788 YFCTCYF 3794 +FC Y+ Sbjct 201 FFCMDYY 207 Score = 36.3 bits (82), Expect = 8.1, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 46/125 (37%), Gaps = 6/125 (5%) Query 3047 IVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYS 3106 +V I + ++ + F F S+ V ++ L +F + + V+ L + Sbjct 456 LVYCLISLYMCILSIFFIIDFVCIFVFSSYCVFWSFFLNFYNFFDIAIFVVFLILSVGF- 514 Query 3107 VIYLYLTFYLTNDVSFLAHIQ--WMVMFTPLVPFWITIAYIICIS--TKHFYWFFSNYLK 3162 +Y F+ ++ + + V+ +V Y +C+ F W F Y + Sbjct 515 -LYYGCLFFYFFNIDCIMLFWRIFFVIIILVVFMIFCCWYFVCMIIFMLLFVWNFVIYFR 573 Query 3163 RRVVF 3167 + + Sbjct 574 YNLKY 578 >sp|B9JA28|ATP6_RHIR8 ATP synthase subunit a OS=Rhizobium rhizogenes (strain K84 / ATCC BAA-868) OX=311403 GN=atpB PE=3 SV=1 Length=250 Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 10/100 (10%) Query 3576 IKGTHHWLLL-TILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM-FVKHKH 3633 KG + L+ ++ +L F+ + + FA+ ++ + + F+KH Sbjct 79 TKGMKFFPLVFSLFMFVLTANLLGMVPYFYTVTSQIIVTFALALLVILTVILYGFIKHGF 138 Query 3634 AFLCLF--------LLPSLATVAYFNMVYMPASWVMRIMT 3665 FL LF LLP + + + + P S +R+ Sbjct 139 GFLKLFVPQGVPGILLPLVVIIEIISFLSRPISLSVRLFA 178 >sp|C4XXB1|AIM21_CLAL4 Altered inheritance of mitochondria protein 21 OS=Clavispora lusitaniae (strain ATCC 42720) OX=306902 GN=AIM21 PE=3 SV=1 Length=648 Score = 37.8 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 55/174 (32%), Gaps = 22/174 (13%) Query 858 SAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLA 917 V+ G EV++ V P+SEL E + + E + Sbjct 187 GDIEVDDGIEVDDAKEV----------PISELSETDSAFKSEPTDDAA---NPVSEEAVK 233 Query 918 SHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEE 977 P ++ E+E + E ED + S+ Q E + Sbjct 234 PT-----EPSEDAEDELVLDRESKTARESEPLEAEDVEEQHDQAMEKASSVTQIGETPSD 288 Query 978 DWLDDDSQQTVGQQDGSEDN----QTTTIQTIVEVQPQLEMELTPVVQTIEVNS 1027 + +D+ ++ + ++N ++ + E ++E + +V + Sbjct 289 AKISEDTSESNKGDEDVKENVLLEESGSEPKDSETGSPFQVEESAIVPSEGKPP 342 >sp|Q68XQ1|ATP6_RICTY ATP synthase subunit a OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=atpB PE=3 SV=1 Length=242 Score = 37.0 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 9/92 (10%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM-FVKHKHAFLCLF-- 3639 L+ ++ +L F + + F + ++ ++ F+KH +FL LF Sbjct 87 LVFSLFIFILFCNLLGMTPYSFTATSHIIVTFTLALLIFLTVTIVGFIKHGMSFLTLFLP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMT 3665 L P + + F + P S +R+ Sbjct 147 QGTPVWLAPLMIVIELFTYLAKPVSLSLRLAA 178 >sp|A5E287|POA1_LODEL ADP-ribose 1''-phosphate phosphatase OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=POA1 PE=3 SV=1 Length=160 Score = 35.9 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 61/162 (38%), Gaps = 28/162 (17%) Query 1038 VYIKNAD-IVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKAT----------------- 1079 V D A K V+ +A N GGG+A + Sbjct 3 VKYIRGDLFTHSAPTGKSIVLAHACNTGGSWGGGIAAVFARKYPKANRQYSEYCHKNSHL 62 Query 1080 -NNAMQVESDDYIATNGPLKVGGSCVLSGHNL-AKHCLHVVGPNVNKGEDIQLLKSA-YE 1136 ++ +++DDY + + S N + + + + E + LKS E Sbjct 63 LGTSLLLKADDYDKSKAYIA---CLFTSDFNQSPEQIVKYT--DQSLQELAKQLKSLPIE 117 Query 1137 NFNQHEVLLAPLLSAGIFGADPIHSLRVC--VDTVRTNVYLA 1176 N ++V+ P +++GIFG ++ V +D++ NVY+ Sbjct 118 TQNGNQVVNMPKINSGIFGVPWENTEAVLDKLDSLDFNVYVI 159 >sp|Q67ES1|TR113_RAT Taste receptor type 2 member 113 OS=Rattus norvegicus OX=10116 GN=Tas2r113 PE=3 SV=1 Length=309 Score = 37.0 bits (84), Expect = 3.3, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 67/215 (31%), Gaps = 31/215 (14%) Query 2211 LEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGY 2270 L ++++ S + I+ + + L L++ + VL L Y Sbjct 29 LMTCIDWVRRRKISLVDQILTALAITRITLILLVFIDWWVSVLFPALHET---GKILRMY 85 Query 2271 LNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLA 2330 + T+ +C + S+ + + ++ S+ + + + Sbjct 86 --FISWTVINHCNLWLTASLSIIYFLKIASFSSIIFL------------YLKFRVKNVVF 131 Query 2331 YILFTRFFYVLGLAAIMQLFFSYFAVHFISNSW-------------LMWLIINLVQMAPI 2377 L F++ AI+ ++F N + + P Sbjct 132 VTLLVSLFFLFINTAIVNVYFDVCFDGVQRNVSQVSRLYNHEQICKFLSFTNPMFAFIPF 191 Query 2378 -SAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMM 2411 ++M ++ S + K+ H +GC + ++ Sbjct 192 VTSMATFFLLIFSLWRHLKNMKHNAEGCRDVSTIV 226 >sp|Q6CRE9|FYV8_KLULA Protein FYV8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=FYV8 PE=3 SV=2 Length=806 Score = 37.8 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 26/157 (17%), Positives = 56/157 (36%), Gaps = 9/157 (6%) Query 875 VADAVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEG 934 V D + + +S+ +T D++ S ++ E K++ Y + Y DED ++ Sbjct 86 VNDDLDSLMHQISQEMTAKDEDVNNTSDPED---EDDAELKVSKTGYFAAYVNDEDTDDR 142 Query 935 DCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQQTVGQQDGS 994 + + + E + E TE + A + ++ E E + Q Sbjct 143 ESVKSDIESAKLAESATEINKTD-----NAKAESVSEVESVAESVKRAKVEVEPVQIVNV 197 Query 995 EDNQTTTIQTIVEVQPQLEMELTPVV-QTIEVNSFSG 1030 + + E + ++E+ P + E G Sbjct 198 GEESFKGDDSEAESVKRADVEVEPFKIVSAEEEPLKG 234 >sp|Q00167|VG78_ICHVA Putative zinc-binding protein ORF78 OS=Ictalurid herpesvirus 1 (strain Auburn) OX=766178 GN=ORF78 PE=4 SV=1 Length=400 Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (11%) Query 2935 DTNVLEGSVAYESLRPDTRYVLMDGSIIQF--PNTYL---EGSVRVVTTFD--SEYCRHG 2987 DT ++ G S+RPD+ + ++F P +G T C Sbjct 32 DTGIVPGLRVESSVRPDSITNFRRLAAVKFKNPEVMECGGKGGCEECKTRPALMLNC--- 88 Query 2988 TCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGV 3021 C+ ++ +C+ R V ++ +R+ V CG Sbjct 89 DCDTAKVPICLGCKPRAVRDHPCFRNRTCVSCGT 122 >sp|Q8IRB5|CLSPN_DROME Claspin OS=Drosophila melanogaster OX=7227 GN=Claspin PE=1 SV=1 Length=1465 Score = 37.4 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 23/89 (26%), Positives = 40/89 (45%), Gaps = 6/89 (7%) Query 929 EDEEEGDCEEEEFEPSTQYEYGT----EDDYQGKPLEFGATS--AALQPEEEQEEDWLDD 982 EDEEEG +EE+EP + Y ED+ ++ A A + + + +ED D+ Sbjct 861 EDEEEGMDVDEEYEPEDKPGYAEVTINEDEEIIDKVDSTAEDDGDAEENKNDADEDPEDN 920 Query 983 DSQQTVGQQDGSEDNQTTTIQTIVEVQPQ 1011 + + +++ SE Q E Q + Sbjct 921 PVEDSEDEKNDSESEQECEANPEPETQTR 949 >sp|P46565|SRG8_CAEEL Serpentine receptor class gamma-8 OS=Caenorhabditis elegans OX=6239 GN=srg-8 PE=3 SV=1 Length=316 Score = 37.0 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 28/206 (14%), Positives = 64/206 (31%), Gaps = 11/206 (5%) Query 2210 CLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREG 2269 L + Y+ K +F++ S+ L+ + L + +P C + Sbjct 39 FLYSRILYVVWVQHKKSYGYHPFFMVYSMVGLILVLLDIFITRLF--VYVPQLCLPAAQF 96 Query 2270 YLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFL 2329 ++++ + Y + L T + W + ++ + Sbjct 97 FISNPFLMELYYPLLNYLHCAQPFIQIFLTTNRMSSVLWPVDHEKFWKINFSRILILNLI 156 Query 2330 AYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFAS 2389 A FF++ ++ YF +I+ ++ + + I + V M + Sbjct 157 A-----PFFFIWNTIISKKVLIFYFGGFYINYLKIIPWASMSLFLFIIRSAVVMITVVTT 211 Query 2390 FYYVWKSYVHVVDGCNSST---CMMC 2412 WK H+ + S C C Sbjct 212 SITFWKM-SHMKNRLKKSEGTLCKAC 236 >sp|A8GLV8|ATP6_RICAH ATP synthase subunit a OS=Rickettsia akari (strain Hartford) OX=293614 GN=atpB PE=3 SV=1 Length=242 Score = 36.3 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (38%), Gaps = 13/95 (14%) Query 3584 LLTILTSLLVLVQSTQW----SLFFFLYENAFLPFAMGIIAMSAFAMM-FVKHKHAFLCL 3638 + ++ SL + V + F + + F + II ++ FVKH FL L Sbjct 84 FIPLVFSLFIFVLFSNLLGMTPYSFTATSHIIVTFTLAIIVFLTVTIVGFVKHGLRFLTL 143 Query 3639 F--------LLPSLATVAYFNMVYMPASWVMRIMT 3665 F L P + + F + P S +R+ Sbjct 144 FLPYGTPLWLAPLMIVIELFTYLAKPVSLSLRLAA 178 >sp|Q9Z1Q1|NEST_MESAU Nestin (Fragments) OS=Mesocricetus auratus OX=10036 GN=NES PE=1 SV=2 Length=1818 Score = 37.0 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 38/225 (17%) Query 844 ELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDEWSMA 903 E D ++K E E F ++ ++L E L++ Sbjct 598 ETDRPLEKENGEPLKPVEEEDQL----FETLIEKEGQESLSSPEEEDQETDRPLEKEEDQ 653 Query 904 TY-YLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYG-----------T 951 L ++ G+ L+S P +ED+E E+E + + Sbjct 654 LVERLVEKEGQESLSS-------PEEEDQETDRPLEKEEDQLVETLIEKQGQECLSSPEE 706 Query 952 EDDYQGKPLE-------------FGATSAALQPEEEQEEDWL--DDDSQQTVGQQDGSED 996 ED +PLE G S + EE+QE L ++ + ++ + Sbjct 707 EDQETDRPLEKEEDQRVERLIEKEGQESLSSPEEEDQETYRLLEKENGEPLKPVEEEDQR 766 Query 997 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIK 1041 + + E L+ E +V+T+E ++ L +N+ Sbjct 767 VERLIEKEDQESLSSLKEEDQRIVKTLERENWESLRSLDENLDTV 811 >sp|Q58990|Y1595_METJA UPF0104 membrane protein MJ1595 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1595 PE=3 SV=1 Length=336 Score = 36.6 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 34/268 (13%), Positives = 77/268 (29%), Gaps = 26/268 (10%) Query 2129 AVNSVPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNS 2188 +N+ P I + L V+ + + N+ F +L+ L F + Sbjct 36 LINTNPEYVILAFILQILVSVILSARWKFIIKILGYSANFKNIFLLVLMGL--FINNITP 93 Query 2189 RIKASMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYST- 2247 ++ A + K + ++++ I+ +G + + Sbjct 94 SMRGGGEAFRAYY----LSKLEEIPKGLAFSTVVVERVLDTAIFLFFTLFVIGYFVVTGF 149 Query 2248 -AALGVLMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLET 2306 +++S + + S N + C C D S+E Sbjct 150 KYLEYLILSWIFLFSLTAIIIYLIANKGLLIKTVTKISKFICKYCSYNYDETKILQSIEE 209 Query 2307 IQITISSFKWDLTAFGLVAEWF------------------LAYILFTRFFYVLGLAAIMQ 2348 ++ FK +VA + L+Y++ + L ++ Sbjct 210 FYNSMKFFKNKRGWEVVVAIFLSVMRYIFDILKLWLLFLSLSYVVSVICVSAVYLITLLS 269 Query 2349 LFFSYFAVHFISNSWLMWLIINLVQMAP 2376 S F + +M L + + P Sbjct 270 GVLSITPSGFGTADTVMILSFSAFNIPP 297 >sp|O74871|YCW3_SCHPO Uncharacterized protein C31H12.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC31H12.03c PE=1 SV=1 Length=245 Score = 36.3 bits (82), Expect = 5.9, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 43/120 (36%), Gaps = 7/120 (6%) Query 924 FYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDD 983 PP++D + GD E + E P AA E++ E + + Sbjct 56 LAPPEDDIDWGDMENDTISTDVNKPAEPESKETSAP-------AAAVEIEKENESIISKE 108 Query 984 SQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNA 1043 + Q G+E++Q TT ++ V ++ Q + + D+ IK A Sbjct 109 TSQAPETSTGAEEHQETTEESKQSVSNEVSSPDVAKEQEKLIQRAKRFGIPVDDEQIKKA 168 >sp|A8F0C9|ATP6_RICM5 ATP synthase subunit a OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=atpB PE=3 SV=2 Length=242 Score = 35.9 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 11/148 (7%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM-FVKHKHAFLCLF-- 3639 L+ ++ +L F + + F + I+ ++ FVKH FL LF Sbjct 87 LVFSLFIFILFCNLLGMTPYSFTTTSHIIVTFTLAILVFLTVTIVGFVKHGLRFLTLFLP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLI 3693 L P + + F + P S +R+ + L + L I Sbjct 147 HGTPLWLAPLMIVIELFTYLARPVSLSLRLAANMMAGHVLLKVIAGFTVSLMIYLKFLPI 206 Query 3694 LMTARTVYDDGARRVW--TLMNVLTLVY 3719 + + + + + +L+ +Y Sbjct 207 PLMMILIGFEIFVAILQAYIFTILSCMY 234 >sp|Q37376|NU2M_ACACA NADH-ubiquinone oxidoreductase chain 2 OS=Acanthamoeba castellanii OX=5755 GN=ND2 PE=3 SV=1 Length=527 Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 49/109 (45%), Gaps = 2/109 (2%) Query 3585 LTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLC-LFLLPS 3643 + + ++LL + S +S+F L+ A +P +G + + +K+K ++ LF++ S Sbjct 402 INLFSNLLEVNPSLSFSIFILLFSIAGIPPLLGFYSKFFLFLFSLKYKMYWMTILFVIFS 461 Query 3644 LATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLL 3692 + +V Y+ + + + R W+ + D + + + + Sbjct 462 VVSVFYY-IRLVKLMYFNRTTGWIFLYDIPFLNSLIISFITIINCLFFF 509 >sp|B5RRC2|MRAY_BORRA Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Borrelia recurrentis (strain A1) OX=412418 GN=mraY PE=3 SV=1 Length=351 Score = 36.3 bits (82), Expect = 6.2, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 79/240 (33%), Gaps = 15/240 (6%) Query 3574 RTIKGTHHWLLLTILTSLLVLVQSTQWSL---------FFFLYENAFLPFAMGIIAMSAF 3624 RT T LL ++ ++ + + L L E +P G++ Sbjct 16 RTAYATIFAFLLALIFGPFIISRLKKLKLDQILRKDGPKHHLSEKMGIPTMGGVLIFFCV 75 Query 3625 AMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVM 3684 + H F FL+ V++ + + ++ D ++ FK+ ++ Sbjct 76 LVSLFFWIHFFNIYFLIVLFVMVSFACLGFTDDLLKIKRKN-SDGLNP---KFKIYGQIL 131 Query 3685 YASAVVLLILMTARTVYDDGARRVWTLMNV-LTLVYKVYYGNALDQAISMWALIISVTSN 3743 ++ V+++ + + + L ++Y + L A + + L + Sbjct 132 FSFISVVMLYYFGGEHVSILYFPFFKSLKLDLGILYIPFGMFVLISASNSFNLTDGLDGL 191 Query 3744 YSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 G+ V+ I ++ ++ ++ + FLG FG N Y Sbjct 192 AIGLSIVVIGALIIIAYLTSRVDFALYLNIPNVKGCEELVIFLGALLGGSFGFL-WFNAY 250 >sp|Q7Z699|SPRE1_HUMAN Sprouty-related, EVH1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SPRED1 PE=1 SV=2 Length=444 Score = 36.6 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 10/77 (13%) Query 4322 GGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGC 4381 G S C+YC+ +H +++GK P DP+ + C +C Y C Sbjct 330 GERSRCVYCQERFNHEE-----NVRGKCQDAP-----DPIKRCIYQVSCMLCAESMLYHC 379 Query 4382 SCDQLREPMLQSADAQS 4398 D + + S Sbjct 380 MSDSEGDFSDPCSCDTS 396 >sp|Q9M6N7|AMT2_ARATH Ammonium transporter 2 OS=Arabidopsis thaliana OX=3702 GN=AMT2 PE=1 SV=2 Length=475 Score = 36.3 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 17/148 (11%) Query 3020 GVDAVNLLTNMFTPLIQPIGALDISASIV---------AGGIVAIVVTCLAYYFMRFRRA 3070 G +A L L G + + ASIV + A L + + ++ A Sbjct 19 GDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLLCWVLLCYKMA 78 Query 3071 FG-EYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLT-NDVSFLAHIQW 3128 FG E F + S + Y + + F T ++ + Sbjct 79 FGEELLPFWGKGGPAFDQGYLKGQAKIPNSNVAAPYFPMATLVYFQFTFAAITTILVAGS 138 Query 3129 MV------MFTPLVPFWITIAYIICIST 3150 ++ + VP W+ +Y + + Sbjct 139 VLGRMNIKAWMAFVPLWLIFSYTVGAYS 166 >sp|C3PM51|ATP6_RICAE ATP synthase subunit a OS=Rickettsia africae (strain ESF-5) OX=347255 GN=atpB PE=3 SV=1 Length=242 Score = 35.9 bits (81), Expect = 7.1, Method: Composition-based stats. Identities = 19/92 (21%), Positives = 33/92 (36%), Gaps = 9/92 (10%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAM-SAFAMMFVKHKHAFLCLF-- 3639 L+ ++ +L F + + F + I+ + FVKH FL LF Sbjct 87 LIFSLFIFILFCNLLGMTPYSFTTTSHIIVTFTLAILVFLMVTIVGFVKHGLRFLTLFLP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMT 3665 L P + + F + P S +R+ Sbjct 147 HGTPLWLAPLMIVIELFTYLARPVSLSLRLAA 178 >sp|P34338|YK14_CAEEL Uncharacterized protein C15H7.4 OS=Caenorhabditis elegans OX=6239 GN=C15H7.4 PE=4 SV=1 Length=327 Score = 36.3 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 48/255 (19%), Positives = 78/255 (31%), Gaps = 22/255 (9%) Query 1806 MMSAPPAQYELKHGTFTCASEYTG----NYQCGHYKHITSKETLYCIDGALLTKSSEYKG 1861 M S P L C+ +G + G K K L +DG K Y Sbjct 1 MCSVKPKYISLPEQNSLCSLPNSGCCQVEVKIGRSKWEQQKAILVKVDGEPAGKIFIYSQ 60 Query 1862 PITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDLVPNQPYP 1921 P+ Y + + GV+C + L N + T +PI N Sbjct 61 PLIGQMYPLHELKSM---------GVICEKAGDFLVNLVTERGLKLTFKPIGSTANCFVT 111 Query 1922 NASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKHYTPSFKK 1981 NF + L + E +T PD N V + Y +K Sbjct 112 ALVSGNFTSLTHETHIKTPLQNQ-EATTSPTIESDLTDKPDTN--VYTGSREGYVAPSEK 168 Query 1982 GAKLLHKPIVWH--VNNATNKATYKPNTWCIRCLWSTKPVETSNS----FDVLKSEDAQG 2035 G+ K +V + + NK N TKP+ + + L + +Q Sbjct 169 GSNEKKKEVVPNGGDKSVENKKGSDRNVKKTPSKTVTKPLLSESRKRKEAKTLATTQSQD 228 Query 2036 MDNLACEDLKPVSEE 2050 + ++ + + E Sbjct 229 LPAPTKDEPERTNSE 243 >sp|Q04654|ATP6_VICFA ATP synthase subunit a OS=Vicia faba OX=3906 GN=ATP6 PE=3 SV=1 Length=291 Score = 35.9 bits (81), Expect = 7.6, Method: Composition-based stats. Identities = 13/103 (13%), Positives = 29/103 (28%), Gaps = 6/103 (6%) Query 3553 EFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFFFLYENAFL 3612 +F P V Q G+ S + ++ T L F + + + Sbjct 96 DFVPNLVNEQIGGL---SGNVKQQFFPCIFVTFTFLLFC---NLQGMIPYSFTVTSHFLI 149 Query 3613 PFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYM 3655 + ++ + FLLP+ + + + Sbjct 150 TLGLSFSIFIGITIVGFQRNGLHFLSFLLPAGVPLPLAPFLVL 192 >sp|Q91ZC7|MRGA5_MOUSE Mas-related G-protein coupled receptor member A5 OS=Mus musculus OX=10090 GN=Mrgpra5 PE=2 SV=2 Length=304 Score = 35.9 bits (81), Expect = 8.0, Method: Composition-based stats. Identities = 35/256 (14%), Positives = 75/256 (29%), Gaps = 38/256 (15%) Query 3588 LTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATV 3647 +T ++ +SL + L A+ H + LL TV Sbjct 27 MTGNAIVFWLLGFSLHRNAFSVYILNLALADFVFLLC--------HIIDSMLLL---LTV 75 Query 3648 AYFNMVYMPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARR 3707 Y N ++ + + M ++G + + + +L + R + + Sbjct 76 FYPNNIFSGYFYTI-------MTVPYIAGLSMLSAISTELCLSVLCPIWYRCHHPEHTST 128 Query 3708 -----VWTLMNVLTLVYKVY-----YGNALDQAISMWALIISVTSNYSGVVTTVMFLARG 3757 +W L ++ ++ + + D+ + VV + +A Sbjct 129 VMCAAIWVLPLLVCILNRYFCSFLDINYNNDKQCLASNFFTRAYLMFLFVVLCLSSMALL 188 Query 3758 IVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVST 3817 C T+ +L + G Y+ L + F L +D+ Sbjct 189 ARLFCGTGQMKLTRLYVTIMLTVLGFLLCGLPFVIYYFLLFNIKDGFCL----FDFRF-- 242 Query 3818 QEFRYMNSQGLLPPKN 3833 YM++ L N Sbjct 243 ----YMSTHVLTAINN 254 >sp|Q4UNH7|ATP6_RICFE ATP synthase subunit a OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=atpB PE=3 SV=1 Length=242 Score = 35.5 bits (80), Expect = 8.3, Method: Composition-based stats. Identities = 19/92 (21%), Positives = 34/92 (37%), Gaps = 9/92 (10%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM-FVKHKHAFLCLF-- 3639 L+ ++ +L F + + F + I+ ++ FVKH FL LF Sbjct 87 LVFSLFIFILFCNLLGMTPYSFTATSHIIVTFTLAILVFLTVTIVGFVKHGLRFLTLFLP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMT 3665 L P + + F + P S +R+ Sbjct 147 HGTPLWLAPLMIVIELFTYLARPVSLSLRLAA 178 >sp|Q4WFQ4|ABCH_ASPFU ABC multidrug transporter H OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=abcH PE=1 SV=2 Length=1424 Score = 36.6 bits (83), Expect = 8.4, Method: Composition-based stats. Identities = 31/175 (18%), Positives = 66/175 (38%), Gaps = 16/175 (9%) Query 3684 MYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALIISVTSN 3743 MY+ + L+ + Y ++ + Y V + + D+A +++ +++ Sbjct 1196 MYSWVAFVTALIVSEFPYLCVCAVLYFVC----WYYTVGFPSDSDKAGAIFFIMLCYEFL 1251 Query 3744 YSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLFCLLNRY 3803 Y+G+ + A F + P+ T + +++ Y + F Y+ LN + Sbjct 1252 YTGIGQFIAAYAPNATFAAL-TNPLILGTLVSFCGVLVPYAQIQAFWR-YW--IYWLNPF 1307 Query 3804 -----FRLTLGVYDYLVSTQEFRYMNSQGLLPPKNSIDAFKLNIKLLGVGGKPCI 3853 L V+D V +E + P + A L+ L GVG + + Sbjct 1308 NYLMGSMLVFSVFDTDVKCKEGEFAV---FDTPNGTTCADYLSTYLQGVGSRANL 1359 >sp|Q12019|MDN1_YEAST Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MDN1 PE=1 SV=1 Length=4910 Score = 36.6 bits (83), Expect = 8.7, Method: Composition-based stats. Identities = 23/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query 926 PPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQPEEEQEEDWLDDDSQ 985 P D ++EE E+EE + + E E+D G + G T AL EE EED +D + Sbjct 4279 PDDLNKEEVGNEDEEVKQESGIESDNENDEPGPEEDAGETETALDEEEGAEED-VDMTND 4337 Query 986 QTVGQQDGSEDNQTTTIQTIVEVQPQLEM 1014 + ++ + Q + + ++ +E Sbjct 4338 EGKEDEENGPEEQAMSDEEELKQDAAMEE 4366 >sp|Q8JZW4|CPNE5_MOUSE Copine-5 OS=Mus musculus OX=10090 GN=Cpne5 PE=1 SV=1 Length=593 Score = 36.3 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 25/60 (42%), Gaps = 0/60 (0%) Query 4230 FIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQ 4289 F L RG ++ + + + NS ++ +FAV++ + DY+ G Q Sbjct 267 FTTSYRELARGQSQFNIYEVINPKKKMKKKKYVNSGTVTLLSFAVESESTFLDYIKGGTQ 326 >sp|Q92JP0|ATP6_RICCN ATP synthase subunit a OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=atpB PE=3 SV=1 Length=242 Score = 35.5 bits (80), Expect = 9.2, Method: Composition-based stats. Identities = 19/92 (21%), Positives = 33/92 (36%), Gaps = 9/92 (10%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAM-SAFAMMFVKHKHAFLCLF-- 3639 L+ ++ +L F + + F + I+ + FVKH FL LF Sbjct 87 LVFSLFIFILFCNLLGMTPYSFTTTSHIIVTFTLAILVFLMVTIVGFVKHGLRFLTLFLP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMT 3665 L P + + F + P S +R+ Sbjct 147 HGTPLWLAPLMIVIELFTYLARPVSLSLRLAA 178 >sp|C4K0P3|ATP6_RICPU ATP synthase subunit a OS=Rickettsia peacockii (strain Rustic) OX=562019 GN=atpB PE=3 SV=1 Length=242 Score = 35.5 bits (80), Expect = 9.3, Method: Composition-based stats. Identities = 19/92 (21%), Positives = 34/92 (37%), Gaps = 9/92 (10%) Query 3583 LLLTILTSLLVLVQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMM-FVKHKHAFLCLF-- 3639 L+ ++ +L F + + F + I+ ++ FVKH FL LF Sbjct 87 LVFSLFIFILFCNLLGMTPYSFTATSHIIVTFTLAILVFLIVTIVGFVKHGLRFLTLFLP 146 Query 3640 ------LLPSLATVAYFNMVYMPASWVMRIMT 3665 L P + + F + P S +R+ Sbjct 147 HGTPLWLAPLIIVIELFTYLARPVSLSLRLAA 178 >sp|Q9HCH3|CPNE5_HUMAN Copine-5 OS=Homo sapiens OX=9606 GN=CPNE5 PE=1 SV=2 Length=593 Score = 36.3 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (42%), Gaps = 0/60 (0%) Query 4230 FIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQ 4289 F L RG ++ V + + NS ++ +FAV++ + DY+ G Q Sbjct 267 FTTSYRELARGQSQFNIYEVVNPKKKMKKKKYVNSGTVTLLSFAVESECTFLDYIKGGTQ 326 >sp|Q6XL69|OPN4_RUTRU Melanopsin OS=Rutilus rutilus OX=48668 GN=opn4 PE=2 SV=1 Length=500 Score = 35.9 bits (81), Expect = 9.8, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 40/118 (34%), Gaps = 3/118 (3%) Query 3682 CVMYASAVVLLILMTARTVYDDGARRVWTLMNVLTLVYKVYYGNALDQAISMWALII--S 3739 C +YA L + + T+ A R + L LV V A +W + S Sbjct 137 CELYAFCGALFGICSMMTLTAIAADRCLAITQPLALVGNVSRRKAGAVLAVVWLYSLGWS 196 Query 3740 VTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGNTLQCIMLVYCFLGYFCTCYFGLF 3797 + + L + + + P L I + + LG +CY G+F Sbjct 197 LPPFFGWSAYVPEGLQTSCSWDYMTFTPS-VRAYTILLFIFVFFIPLGIIVSCYVGIF 253 >sp|D0E0C2|SCNA1_PERAM Sodium channel protein PaFPC1 OS=Periplaneta americana OX=6978 PE=1 SV=1 Length=1553 Score = 36.3 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 31/164 (19%), Positives = 58/164 (35%), Gaps = 3/164 (2%) Query 3545 LGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVLVQSTQWSLFF 3604 L S LED F PF ++ V ++ G +L T + + ST F Sbjct 84 LASTPLED-FDPFYKNKKTFVVVTKAGDIFRFSGEKSLWMLDPFTPIRRVAISTMVQPIF 142 Query 3605 FLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIM 3664 + + + M A ++ + FL ++ + + V + P +++ Sbjct 143 SYFIMITILIHCIFMIMPATQTTYIL-ELVFLSIYTIEVVVKVLARGFILHPFAYLRDPW 201 Query 3665 TWLDMVDTSLSGFK-LKDCVMYASAVVLLILMTARTVYDDGARR 3707 WLD + T + + D + +L + RTV R Sbjct 202 NWLDFLVTLIGYITLVVDLGHLYALRAFRVLRSWRTVTIVPGWR 245 Lambda K H a alpha 0.318 0.129 0.347 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0395 0.140 1.90 42.6 43.6 Effective search space used: 542934664668 Database: uniprot_sprot.fasta Posted date: Apr 3, 2024 12:05 PM Number of letters in database: 206,678,396 Number of sequences in database: 571,282 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40