PSIBLAST 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: uniprot_sprot.fasta 571,282 sequences; 206,678,396 total letters Results from round 1 Query= YP_009724397.2 nucleocapsid phosphoprotein [Severe acute respiratory syndrome coronavirus 2] Length=419 Score E Sequences producing significant alignments: (Bits) Value sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory sy... 854 0.0 sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004 OX... 674 0.0 sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory syn... 672 0.0 sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442... 665 0.0 sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005 OX... 660 0.0 sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694... 284 6e-91 sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005 OX... 278 2e-88 sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694... 277 2e-88 sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory syn... 276 5e-88 sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694... 236 7e-72 sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain 1... 199 6e-58 sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1 (iso... 197 4e-57 sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1 (iso... 196 5e-57 sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1 (iso... 196 5e-57 sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain ... 196 1e-56 sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain S... 195 2e-56 sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain ... 192 2e-55 sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76... 192 2e-55 sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain 3... 192 2e-55 sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain 2... 192 3e-55 sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating en... 191 4e-55 sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain ... 191 6e-55 sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating en... 191 7e-55 sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain 681... 189 3e-54 sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain NJ)... 189 3e-54 sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate... 186 3e-53 sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain ... 177 2e-49 sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain ... 176 2e-49 sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain Q... 176 2e-49 sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain M... 176 2e-49 sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain ... 176 2e-49 sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain ... 176 3e-49 sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain ... 176 3e-49 sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain F... 175 9e-49 sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43 OX=3... 170 4e-47 sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain ... 121 2e-29 sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain F... 120 4e-29 sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis... 119 9e-29 sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis ... 119 2e-28 sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis... 118 4e-28 sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis ... 117 8e-28 sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis... 115 3e-27 sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis... 115 4e-27 sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis... 115 4e-27 sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis... 114 8e-27 sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis... 114 1e-26 sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis... 114 1e-26 sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis ... 114 1e-26 sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain ... 112 2e-26 sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis... 112 5e-26 sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis... 111 1e-25 sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain ... 109 3e-25 sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis ... 109 4e-25 sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastr... 105 8e-24 sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain ... 104 2e-23 sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain ... 103 5e-23 sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronav... 102 1e-22 sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronav... 102 1e-22 sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastr... 101 3e-22 sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 OX... 100 5e-22 sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain ... 95.1 3e-20 sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E OX=1... 89.0 5e-18 sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea v... 87.0 3e-17 sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63 OX=2... 61.2 5e-09 sp|P11278|PLYP_YERPS Periplasmic pectate lyase OS=Yersinia pseudo... 34.3 2.3 sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens OX=9606 GN=ANK1 PE... 33.9 3.6 sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus OX=10090 GN=Ank1 P... 33.1 6.7 sp|C0LGK4|Y2165_ARATH Probable LRR receptor-like serine/threonine... 32.7 7.1 >sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=N PE=1 SV=1 Length=419 Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/419 (100%), Positives = 419/419 (100%), Gaps = 0/419 (0%) Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG Sbjct 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG Sbjct 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120 Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS Sbjct 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ Sbjct 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA 419 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA Sbjct 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA 419 >sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004 OX=349344 GN=N PE=3 SV=1 Length=421 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/421 (90%), Positives = 396/421 (94%), Gaps = 2/421 (0%) Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 MSDNGPQNQR+APRITFGGP+DST +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG Sbjct 1 MSDNGPQNQRSAPRITFGGPTDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60 Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120 KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEAS 120 Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 QASSRSSSRSR +SRNSTPGSSRG SPARMA GG+ ALALLLLDRLNQLESK+SG+ QQ Sbjct 181 QASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGRSQQ 240 Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 QQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDAY Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360 Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418 K FPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADSTQ Sbjct 361 KIFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADSTQ 420 Query 419 A 419 A Sbjct 421 A 421 >sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=N PE=1 SV=1 Length=422 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/422 (91%), Positives = 398/422 (94%), Gaps = 3/422 (1%) Query 1 MSDNGPQ-NQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQH 59 MSDNGPQ NQR+APRITFGGP+DST +NQNG R+GAR KQRRPQGLPNNTASWFTALTQH Sbjct 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60 Query 60 GKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEA 119 GKE+L+FPRGQGVPINTNS PDDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA Sbjct 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120 Query 120 GLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGG 179 LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAA VLQLPQGTTLPKGFYAEGSRGG Sbjct 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180 Query 180 SQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQ 239 SQASSRSSSRSR +SRNSTPGSSRG SPARMA GG+ ALALLLLDRLNQLESK+SGKGQ Sbjct 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240 Query 240 QQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYK 299 QQQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK Sbjct 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300 Query 300 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDA Sbjct 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADST 417 YKTFPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADST Sbjct 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420 Query 418 QA 419 QA Sbjct 421 QA 422 >sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442736 GN=N PE=3 SV=1 Length=421 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/421 (90%), Positives = 396/421 (94%), Gaps = 2/421 (0%) Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 MSDNGPQ+QR+APRITFGGP+DS +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG Sbjct 1 MSDNGPQSQRSAPRITFGGPADSNDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60 Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120 KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEAS 120 Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 Q+SSRSSSRSR +SRNSTPGSSRG+SPAR+A GG+ ALALLLLDRLNQLESK+SGKGQQ Sbjct 181 QSSSRSSSRSRGNSRNSTPGSSRGSSPARLASGGGETALALLLLDRLNQLESKVSGKGQQ 240 Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 Q GQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQELIRQG DYKH Sbjct 241 QPGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGIDYKH 300 Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDAY Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360 Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418 KTFPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADSTQ Sbjct 361 KTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQHSMSGASADSTQ 420 Query 419 A 419 A Sbjct 421 A 421 >sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005 OX=389167 GN=N PE=3 SV=1 Length=420 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/421 (90%), Positives = 394/421 (94%), Gaps = 3/421 (1%) Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 MSDNGPQNQR+APRITFGGPSDST +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG Sbjct 1 MSDNGPQNQRSAPRITFGGPSDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60 Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120 KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK LSPRWYFYYLGTGPEA Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKKLSPRWYFYYLGTGPEAS 120 Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 QASSRSSSRSR +SRNSTPGSSRG SPARMA G+ ALALLLLDRLNQLESK+SGKGQQ Sbjct 181 QASSRSSSRSRGNSRNSTPGSSRGNSPARMASGSGETALALLLLDRLNQLESKVSGKGQQ 240 Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 QQGQTVTKKSAAEASKKPRQKRTATK+YNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK+ Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKSYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKY 300 Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 WPQIAQFAPSASAFFGMSRIGMEVTP GTWLTY GAIKLDDKDP FKD VILLNKHIDAY Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPLGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360 Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418 K FPPTEPKKDKKKK DE Q LPQR KKQ TVTLLPAAD+DDFS+QLQ SMS SADSTQ Sbjct 361 KAFPPTEPKKDKKKKTDEAQPLPQR-KKQPTVTLLPAADMDDFSRQLQNSMSGASADSTQ 419 Query 419 A 419 A Sbjct 420 A 420 >sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694008 GN=N PE=3 SV=1 Length=427 Score = 284 bits (727), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 182/380 (48%), Positives = 233/380 (61%), Gaps = 21/380 (6%) Query 29 NGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYR 88 N +RSG + RP PN T SWFT LTQHGK+ L FP GQGVP+N NS+P GY+R Sbjct 21 NSQRSGRPRTKPRPA--PNTTVSWFTGLTQHGKQPLAFPPGQGVPLNANSTPAQNAGYWR 78 Query 89 RATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGT 148 R R+I G+G K L+PRWYFYY GTGPEA LP+ + KDGIIWV GA + P GT Sbjct 79 RQDRKINTGNG-TKPLAPRWYFYYTGTGPEANLPFRSVKDGIIWVHENGATDAP-SVFGT 136 Query 149 RNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPA 208 RNPAN+ AIV Q GTTLPK F+ EG+ G SQ+SSR+SSRS + S + S+ + A Sbjct 137 RNPANDPAIVTQFAPGTTLPKNFHIEGTGGNSQSSSRASSRSSSRSSSRNGRSNNSSRNA 196 Query 209 RMAGNG-GD---AALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTA 264 A +G GD A +LLD +L +GKG +Q + +TKK A A +K R KR A Sbjct 197 SPAPHGVGDVVGAGTLSVLLDLQKRLADLEAGKGNKQP-KVITKKDAQAAKQKMRHKRVA 255 Query 265 TKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-- 322 TK YNV QAFG RGP Q NFGD + + GT+ WPQIA+ APSASAF S+ + Sbjct 256 TKGYNVVQAFGMRGPGPLQSNFGDMQYNKLGTEDPRWPQIAELAPSASAFMSTSQFKVTH 315 Query 323 ----EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKK--A 376 E +L+Y+GAIKLD K+PN+ + +L+ +IDAYK+F PKK++K+K Sbjct 316 QSNDENGEPVYFLSYSGAIKLDPKNPNYNKWMEILDANIDAYKSF----PKKERKQKPSG 371 Query 377 DETQALPQRQKKQQTVTLLP 396 D+ P + + L P Sbjct 372 DDAATAPATSQMEDVPELPP 391 >sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005 OX=389230 GN=N PE=3 SV=1 Length=424 Score = 278 bits (710), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 183/362 (51%), Positives = 232/362 (64%), Gaps = 26/362 (7%) Query 36 RSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIR 95 R + +P+ PNNT SW+T LTQHGK L FP GQGVP+N NS+ GY+RR R+I Sbjct 27 RGRNPKPRPAPNNTVSWYTGLTQHGKNPLAFPPGQGVPLNANSTTAQNAGYWRRQDRKIN 86 Query 96 GGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNA 155 G+G +K L+PRW+FYY GTGPEA LP+ + KDGI+WV EGA + P GTRNPAN+A Sbjct 87 TGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPANDA 144 Query 156 AIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTP-----GSSRGTSPARM 210 AIV Q GT +PK F+ EG+ G SQ+SSR+SS SRNSSR+++ +SRGTSP Sbjct 145 AIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSNSRNSSRSNSRGGRSTSNSRGTSPVSH 204 Query 211 AGNGGDAALALLLL----DRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK 266 ++ AL LL RL LES G+ +Q + VTKK AA A K R KR ATK Sbjct 205 GVGSAESLAALPLLLDLQKRLADLES-----GKSKQPKVVTKKDAAAAKNKMRHKRVATK 259 Query 267 AYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTP 326 +NVTQAFG RGP QGNFGD + GT+ WPQ+A+ APSASAF MS+ + Sbjct 260 GFNVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQS 319 Query 327 SG------TWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQ 380 + +L+Y+GAIKLD K+PN+K + LL +IDAYKTF PKK++K K E Sbjct 320 NDDKGDPIYFLSYSGAIKLDPKNPNYKKWLELLEANIDAYKTF----PKKERKPKTTEDG 375 Query 381 AL 382 A+ Sbjct 376 AV 377 >sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694007 GN=N PE=3 SV=1 Length=423 Score = 277 bits (709), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 185/362 (51%), Positives = 233/362 (64%), Gaps = 26/362 (7%) Query 36 RSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIR 95 R + +P+ PNNT SW+T LTQHGK L FP GQGVP+N NS+ GY+RR R+I Sbjct 27 RGRNPKPRPAPNNTVSWYTGLTQHGKNPLAFPPGQGVPLNANSTTAQNAGYWRRQDRKIN 86 Query 96 GGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNA 155 G+G +K L+PRW+FYY GTGPEA LP+ + KDGI+WV EGA + P GTRNPAN+A Sbjct 87 TGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPANDA 144 Query 156 AIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG-----SSRGTSPARM 210 AIV Q GT +PK F+ EG+ G SQ+SSR+SS SRNSSR+S+ G +SRGTSP Sbjct 145 AIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSNSRNSSRSSSRGGRSTSNSRGTSPVSH 204 Query 211 AGNGGDAALALLLL----DRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK 266 ++ AL LL RL LES G+ +Q + VTKK AA A K R KR ATK Sbjct 205 GVGSAESLAALPLLLDLQKRLADLES-----GKSKQPKVVTKKDAAAAKNKMRHKRVATK 259 Query 267 AYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTP 326 +NVTQAFG RGP QGNFGD + GT+ WPQ+A+ APSASAF MS+ + Sbjct 260 GFNVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQS 319 Query 327 SG------TWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQ 380 + +L+Y+GAIKLD K+PN+K + LL +IDAYKTF PKK++K K E Sbjct 320 NDDKGDPIYFLSYSGAIKLDPKNPNYKKWLELLESNIDAYKTF----PKKERKPKTTEDG 375 Query 381 AL 382 A+ Sbjct 376 AV 377 >sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=N PE=1 SV=1 Length=411 Score = 276 bits (705), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 186/366 (51%), Positives = 241/366 (66%), Gaps = 24/366 (7%) Query 12 APR-ITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQ 70 APR ++F +D T +N S R + +P+ PNNT SW+T LTQHGK L FP GQ Sbjct 6 APRAVSFADNNDITNTN----LSRGRGRNPKPRAAPNNTVSWYTGLTQHGKVPLTFPPGQ 61 Query 71 GVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGI 130 GVP+N NS+P GY+RR R+I G+G +K L+PRWYFYY GTGPEA LP+ A KDGI Sbjct 62 GVPLNANSTPAQNAGYWRRQDRKINTGNG-IKQLAPRWYFYYTGTGPEAALPFRAVKDGI 120 Query 131 IWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRS 190 +WV +GA + P GTRNP N++AIV Q GT LPK F+ EG+ G SQ+SSR+SS S Sbjct 121 VWVHEDGATDAPST-FGTRNPNNDSAIVTQFAPGTKLPKNFHIEGTGGNSQSSSRASSVS 179 Query 191 RNSSRNSTPGS-----SRGTSP--ARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQG 243 RNSSR+S+ GS +RGTSP + + GGD D LN+L++ SGK +Q Q Sbjct 180 RNSSRSSSQGSRSGNSTRGTSPGPSGIGAVGGDLLYL----DLLNRLQALESGKVKQSQP 235 Query 244 QTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQ 303 + +TKK AA A K R KRT+TK++N+ QAFG RGP QGNFGD +L + GT+ WPQ Sbjct 236 KVITKKDAAAAKNKMRHKRTSTKSFNMVQAFGLRGPGDLQGNFGDLQLNKLGTEDPRWPQ 295 Query 304 IAQFAPSASAFFGMSRIGMEVTPSG------TWLTYTGAIKLDDKDPNFKDQVILLNKHI 357 IA+ AP+ASAF GMS+ + + +L Y+GAIKLD K+PN+ + LL ++I Sbjct 296 IAELAPTASAFMGMSQFKLTHQNNDDHGNPVYFLRYSGAIKLDPKNPNYNKWLELLEQNI 355 Query 358 DAYKTF 363 DAYKTF Sbjct 356 DAYKTF 361 >sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694006 GN=N PE=3 SV=1 Length=468 Score = 236 bits (602), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 208/371 (56%), Gaps = 17/371 (5%) Query 12 APRITFGGPSDSTGSN---QNGERSGARSKQ----------RRPQGLPNNTASWFTALTQ 58 +P++TF SD + S +NG R+GAR K +P+ P SWF L Q Sbjct 13 SPKVTFKQESDGSDSESERRNGNRNGARPKNNNSRGSAPKPEKPKAAPPQNVSWFAPLVQ 72 Query 59 HGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPE 118 GK +L+FPRG+GVP++ + GY+ R R + G GK +PRWYFYY GTG Sbjct 73 TGKAELRFPRGEGVPVSQGVDSTYEHGYWLRTQRSFQKG-GKQVLANPRWYFYYTGTGRF 131 Query 119 AGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRG 178 L +G I+WV EGA +GTRNP+N+ AI +QL G +PKGFYAEG Sbjct 132 GDLRFGTKNPDIVWVGQEGANINRLGDMGTRNPSNDGAIPVQLAGG--IPKGFYAEGRGS 189 Query 179 GSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSG-K 237 + S S + SR SSR ++ SSRG SP R A N L+ +L +LES++SG K Sbjct 190 RGNSRSSSRNSSRASSRGNSRASSRGASPGRPAANPSTEPWMAYLVQKLERLESQVSGTK 249 Query 238 GQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTD 297 + VTK AA +KK R KRTA K VT +GRRGP +GNFGD+E+I+ GTD Sbjct 250 PATKNPVQVTKNEAAANAKKLRHKRTAHKGSGVTVNYGRRGPGDLEGNFGDREMIKLGTD 309 Query 298 YKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHI 357 + AQ AP+ S+F MS + WL Y GAIKL DPN++ +L +++ Sbjct 310 DPRFAAAAQMAPNVSSFLFMSHLSTRDEDDALWLHYKGAIKLPKDDPNYEQWTKILAENL 369 Query 358 DAYKTFPPTEP 368 +AYK FPPTEP Sbjct 370 NAYKDFPPTEP 380 >sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain 1) OX=11139 GN=N PE=3 SV=1 Length=455 Score = 199 bits (506), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 133/352 (38%), Positives = 186/352 (53%), Gaps = 36/352 (10%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F +GQGVPI +Q GY+ R RR + DG+ K L PRW Sbjct 67 SWFSGITQFQKGKEFQFAQGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168 YFYYLGTGP AG YG + DG++WVA++ A I R+P+++ AI + GT LP Sbjct 127 YFYYLGTGPHAGAEYGDDIDGVVWVASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLP 186 Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228 +GFY EGS + AS S N SS PA +A L+L +L Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL- 245 Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284 K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294 Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG---------TWLTYTG 335 NFG E+++ GT +P +A+ AP+ SAFF S++ + SG L Y+G Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTPSAFFFGSKLELVKKNSGGADDPTKDVYELQYSG 354 Query 336 AIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQK 387 AI+ D P F+ + +LN+++DAY +D+ AD PQR++ Sbjct 355 AIRFDSTLPGFETIMKVLNENLDAY---------QDQAGGADVVSPKPQRKR 397 >sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=N PE=1 SV=1 Length=441 Score = 197 bits (500), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 133/362 (37%), Positives = 196/362 (54%), Gaps = 34/362 (9%) Query 41 RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGD 98 +PQG SWF+ +TQ K D KF GQGVPI P + GY+ R +RR + D Sbjct 53 QPQGNTIPHYSWFSGITQFQKGRDFKFSDGQGVPIAFGVPPSEAKGYWYRHSRRSFKTAD 112 Query 99 GKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAI 157 G+ K L PRWYFYYLGTGP A YG + +G+ WVA A +TP D + +R+P AI Sbjct 113 GQQKQLLPRWYFYYLGTGPYANASYGESLEGVFWVANHQADTSTPSD-VSSRDPTTQEAI 171 Query 158 VLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217 + P GT LP+G+Y EGS G S ++SR SRS++ N+ SR S R + D+ Sbjct 172 PTRFPPGTILPQGYYVEGS-GRSASNSRPGSRSQSRGPNNR-SLSRSNSNFRHS----DS 225 Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273 + + D + L ++ G+ + Q VTK++A E KPRQKRT K NV Q Sbjct 226 IVKPDMADEIANL--VLAKLGKDSKPQQVTKQNAKEIRHKILTKPRQKRTPNKHCNVQQC 283 Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT---- 329 FG+RGP Q NFG+ E+++ GT+ +P +A+ AP+ AFF S++ + S Sbjct 284 FGKRGPSQ---NFGNAEMLKLGTNDPQFPILAELAPTPGAFFFGSKLDLVKRDSEADSPV 340 Query 330 ----WLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQR 385 L Y+G+I+ D P F+ + +L ++++AY ++ +D + PQR Sbjct 341 KDVFELHYSGSIRFDSTLPGFETIMKVLEENLNAYVN-------SNQNTDSDSLSSKPQR 393 Query 386 QK 387 ++ Sbjct 394 KR 395 >sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=N PE=3 SV=1 Length=441 Score = 196 bits (499), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 130/334 (39%), Positives = 186/334 (56%), Gaps = 25/334 (7%) Query 41 RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGD 98 +PQG P SWF+ +TQ K D KFP GQGVPI P + GY+ + RR + D Sbjct 53 QPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIAYGIPPSEAKGYWYKHNRRSFKTAD 112 Query 99 GKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIV 158 G+ K L PRWYFYYLGTGP A YG +GI WVA+ A + + R+P AI Sbjct 113 GQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVASHQADTSIPSDVSARDPTIQEAIP 172 Query 159 LQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAA 218 + GT LP+G+Y EGS G S ++SR SRS++ N+ SR S R + D+ Sbjct 173 TRFSPGTILPQGYYVEGS-GRSASNSRPGSRSQSRGPNNR-SLSRSNSNFRHS----DSI 226 Query 219 LALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAF 274 + + D + L ++ G+ + Q VTK++A E KPRQKRT K NV Q F Sbjct 227 VKPDMADEIASL--VLAKLGKDSKPQQVTKQNAKEIRHKILMKPRQKRTPNKFCNVQQCF 284 Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM------EVTPS- 327 G+RGP Q NFG+ E+++ GT+ +P +A+ AP+ AFF S++ + +PS Sbjct 285 GKRGPLQ---NFGNSEMLKLGTNDPQFPILAELAPTPGAFFFGSKLELFKRDSDADSPSK 341 Query 328 GTW-LTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 T+ L Y+G+I+ D P F+ + +L +++DAY Sbjct 342 DTFELRYSGSIRFDSTLPGFETIMKVLKENLDAY 375 >sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=N PE=3 SV=1 Length=441 Score = 196 bits (499), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 130/334 (39%), Positives = 186/334 (56%), Gaps = 25/334 (7%) Query 41 RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGD 98 +PQG P SWF+ +TQ K D KFP GQGVPI P + GY+ + RR + D Sbjct 53 QPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIAYGIPPSEAKGYWYKHNRRSFKTAD 112 Query 99 GKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIV 158 G+ K L PRWYFYYLGTGP A YG +GI WVA+ A + + R+P AI Sbjct 113 GQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVASHQADTSIPSDVSARDPTIQEAIP 172 Query 159 LQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAA 218 + GT LP+G+Y EGS G S ++SR SRS++ N+ SR S R + D+ Sbjct 173 TRFSPGTILPQGYYVEGS-GRSASNSRPGSRSQSRGPNNR-SLSRSNSNFRHS----DSI 226 Query 219 LALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAF 274 + + D + L ++ G+ + Q VTK++A E KPRQKRT K NV Q F Sbjct 227 VKPDMADEIASL--VLAKLGKDSKPQQVTKQNAKEIRHKILMKPRQKRTPNKFCNVQQCF 284 Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM------EVTPS- 327 G+RGP Q NFG+ E+++ GT+ +P +A+ AP+ AFF S++ + +PS Sbjct 285 GKRGPLQ---NFGNSEMLKLGTNDPQFPILAELAPTPGAFFFGSKLELFKRDSDADSPSK 341 Query 328 GTW-LTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 T+ L Y+G+I+ D P F+ + +L +++DAY Sbjct 342 DTFELRYSGSIRFDSTLPGFETIMKVLKENLDAY 375 >sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain JHM) OX=11144 GN=N PE=1 SV=1 Length=455 Score = 196 bits (498), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/327 (39%), Positives = 182/327 (56%), Gaps = 29/327 (9%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F +GQGVPI Q GY+ R RR + DG+ K L PRW Sbjct 67 SWFSGITQFQKGKEFQFAQGQGVPIANGIPASQQKGYWYRHNRRSFKTPDGQQKQLLPRW 126 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168 YFYYLGTGP AG YG + +G++WVA++ A I R+P+++ AI + GT LP Sbjct 127 YFYYLGTGPYAGAEYGDDIEGVVWVASQQAETRTSADIVERDPSSHEAIPTRFAPGTVLP 186 Query 169 KGFYAEGSRGGSQASSRSSSRSRNSS-RNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227 +GFY EGS G S +SRS SR ++ N SS PA +A L+L +L Sbjct 187 QGFYVEGS-GRSAPASRSGSRPQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL 245 Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQ 283 K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q Sbjct 246 ----GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ-- 294 Query 284 GNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG---------TWLTYT 334 NFG E+++ GT +P +A+ AP+A AFF S++ + SG L Y+ Sbjct 295 -NFGGPEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELVKKNSGGADGPTKDVYELQYS 353 Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYK 361 GA++ D P F+ + +LN++++AY+ Sbjct 354 GAVRFDSTLPGFETIMKVLNENLNAYQ 380 >sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain S) OX=11145 GN=N PE=3 SV=1 Length=454 Score = 195 bits (496), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 131/355 (37%), Positives = 187/355 (53%), Gaps = 37/355 (10%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F +GQGVPI +Q GY+ R RR + DG+ K L PRW Sbjct 67 SWFSGITQFQKGKEFQFVQGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168 YFYYLGTGP AG YG + +G++WVA++ A I R+P+++ AI + GT LP Sbjct 127 YFYYLGTGPHAGAEYGDDIEGVVWVASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLP 186 Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228 +GFY EGS + AS S N SS PA +A L+L +L Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL- 245 Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284 K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294 Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335 NFG E+++ GT +P +A+ AP+A AFF S++ + E T L Y+G Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 354 Query 336 AIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390 A++ D P F+ + +LN++++AY+ K AD PQR+ ++Q Sbjct 355 AVRFDSTLPGFETIMKVLNENLNAYQ----------KDGGADVVSPKPQRKGRRQ 399 >sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain A59) OX=11142 GN=N PE=1 SV=2 Length=454 Score = 192 bits (489), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/355 (37%), Positives = 183/355 (52%), Gaps = 37/355 (10%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI +Q GY+ R RR + DG+ K L PRW Sbjct 67 SWFSGITQFQKGKEFQFAEGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168 YFYYLGTGP AG YG + +G+ WVA A + I R+P+++ AI + GT LP Sbjct 127 YFYYLGTGPHAGASYGDSIEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLP 186 Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228 +GFY EGS + AS S N SS PA +A L+L +L Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL- 245 Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284 K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294 Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335 NFG E+++ GT +P +A+ AP+ AFF S++ + E T L Y+G Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 354 Query 336 AIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390 A++ D P F+ + +LN++++AY+ K AD PQR+ ++Q Sbjct 355 AVRFDSTLPGFETIMKVLNENLNAYQ----------KDGGADVVSPKPQRKGRRQ 399 >sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76583 GN=N PE=2 SV=1 Length=457 Score = 192 bits (489), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 132/369 (36%), Positives = 191/369 (52%), Gaps = 36/369 (10%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ KF GQGVPI +Q GY+ R RR + DG+ K L PRW Sbjct 67 SWFSGITQFQKGKEFKFAEGQGVPIANGIPATEQKGYWFRHNRRSFKSPDGQQKQLLPRW 126 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168 YFYYLGTGP AG YG + +G+ WVA + A I R+P+++ AI + GT LP Sbjct 127 YFYYLGTGPYAGAEYGDDVEGVCWVANKQADTRTSADIAERDPSSHEAIPTRFAPGTFLP 186 Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228 +G+Y EGS + AS S N SS PA + +A L+L +L Sbjct 187 QGYYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASIVKPDMAEEIAALVLAKL- 245 Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284 K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294 Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335 NFG E+++ GT +P +A+ AP+A AFF S++ + E T L Y+G Sbjct 295 NFGGPEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELVKKNSVGVDEPTKDVYELQYSG 354 Query 336 AIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLL 395 A++ D P F+ + +L ++++AY +++ AD PQR++ Q+ V Sbjct 355 AVRFDSTLPGFETIMKVLRENLNAY---------QNQDGGADVVSPKPQRKRGQRQVAQK 405 Query 396 PAADLDDFS 404 ++D+ S Sbjct 406 KNDEVDNVS 414 >sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain 3) OX=11140 GN=N PE=1 SV=1 Length=454 Score = 192 bits (489), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/355 (37%), Positives = 183/355 (52%), Gaps = 37/355 (10%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI +Q GY+ R RR + DG+ K L PRW Sbjct 67 SWFSGITQFQKGKEFQFAEGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168 YFYYLGTGP AG YG + +G+ WVA A + I R+P+++ AI + GT LP Sbjct 127 YFYYLGTGPHAGASYGDSIEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLP 186 Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228 +GFY EGS + AS S N SS PA +A L+L +L Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL- 245 Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284 K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294 Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335 NFG E+++ GT +P +A+ AP+ AFF S++ + E T L Y+G Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 354 Query 336 AIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390 A++ D P F+ + +LN++++AY+ K AD PQR+ ++Q Sbjct 355 AVRFDSTLPGFETIMKVLNENLNAYQ----------KDGGADVVSPKPQRKGRRQ 399 >sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain 2) OX=76344 GN=N PE=2 SV=1 Length=451 Score = 192 bits (487), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 123/326 (38%), Positives = 176/326 (54%), Gaps = 27/326 (8%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F +GQGVPI + +Q GY+ R RR + DG+ K L PRW Sbjct 63 SWFSGITQFQKGKEFQFAQGQGVPIASGIPASEQKGYWYRHNRRSFKTPDGQHKQLLPRW 122 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168 YFYYLGTGP AG YG + +G++WVA++ A + R+P+++ AI + GT LP Sbjct 123 YFYYLGTGPHAGAEYGDDIEGVVWVASQQADTKTTADVVERDPSSHEAIPTRFAPGTVLP 182 Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228 +GFY EGS + AS S N SS PA +A L+L +L Sbjct 183 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASAVKPDMAEEIAALVLAKLG 242 Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284 + GQ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q Sbjct 243 K------DAGQPKQ---VTKQSAKEVRQKILTKPRQKRTPNKQCPVQQCFGKRGPNQ--- 290 Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335 NFG E+++ GT +P +A+ AP+ SAFF S++ + E T L Y+G Sbjct 291 NFGGSEMLKLGTSDPQFPILAELAPTPSAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 350 Query 336 AIKLDDKDPNFKDQVILLNKHIDAYK 361 AI+ D P F+ + +L ++++AY+ Sbjct 351 AIRFDSTLPGFETIMKVLTENLNAYQ 376 >sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating encephalomyelitis virus (strain IAF-404) OX=230236 GN=N PE=3 SV=1 Length=449 Score = 191 bits (486), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 133/334 (40%), Positives = 186/334 (56%), Gaps = 39/334 (12%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKHQYGTDIDGVFWVASNQADINTPAD-IVDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGS-SRGTSPARMA--GNGGDAA--LALL 222 P+G+Y EGS G S +SRS+SR+ N R + GS SR S R + G D A +A L Sbjct 183 PQGYYIEGS-GRSAPNSRSTSRAPN--RAPSAGSRSRANSGNRTSTPGVTPDMADQIASL 239 Query 223 LLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRG 278 +L +L + +K Q VTK++A E + KPRQKR+ K V Q FG+RG Sbjct 240 VLAKLGKDATKP---------QQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRG 290 Query 279 PEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPS 327 P Q NFG E+++ GT +P +A+ AP+A AFF SR+ + E Sbjct 291 PNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKD 347 Query 328 GTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 L Y GAI+ D F+ + +LN++++AY+ Sbjct 348 VYELRYNGAIRFDSTLSGFETIMKVLNQNLNAYQ 381 >sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain DVIM) OX=231423 GN=N PE=3 SV=1 Length=455 Score = 191 bits (486), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 125/326 (38%), Positives = 174/326 (53%), Gaps = 27/326 (8%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI +Q GY+ R RR + DG+ K L PRW Sbjct 67 SWFSGITQFQKGKEFQFADGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168 YFYYLGTGP AG YG + +G+ WVA A + I R+P+++ AI + GT LP Sbjct 127 YFYYLGTGPHAGATYGDSIEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLP 186 Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228 +GFY EGS + AS S S N SS PA +A L+L +L Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGSNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL- 245 Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284 K +G+ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q Sbjct 246 ---GKDAGQPKQ-----VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294 Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335 NFG E+++ GT +P +A+ AP+ AFF S++ + E T L Y+G Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTPGAFFFGSKLELVKKNSGGVDEPTKDVYELLYSG 354 Query 336 AIKLDDKDPNFKDQVILLNKHIDAYK 361 AI+ D P F+ + +LN++++AY+ Sbjct 355 AIRFDSTLPGFETIMKVLNENLNAYQ 380 >sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating encephalomyelitis virus (strain 67N) OX=230237 GN=N PE=3 SV=1 Length=449 Score = 191 bits (485), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 133/334 (40%), Positives = 186/334 (56%), Gaps = 39/334 (12%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPSTEAKGYWYRHNRRSFKTADGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADINTPAD-IVDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGS-SRGTSPARMA--GNGGDAA--LALL 222 P+G+Y EGS G S +SRS+SR+ N R + GS SR S R + G D A +A L Sbjct 183 PQGYYIEGS-GRSAPNSRSTSRAPN--RAPSAGSRSRANSGNRTSTPGVTPDMADQIASL 239 Query 223 LLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRG 278 +L +L + +K Q VTK++A E + KPRQKR+ K V Q FG+RG Sbjct 240 VLAKLGKDATKP---------QQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRG 290 Query 279 PEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPS 327 P Q NFG E+++ GT +P +A+ AP+A AFF SR+ + E Sbjct 291 PNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKD 347 Query 328 GTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 L Y GAI+ D F+ + +LN++++AY+ Sbjct 348 VYELRYNGAIRFDSTLSGFETIMKVLNQNLNAYQ 381 >sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain 681) OX=33740 GN=N PE=3 SV=1 Length=454 Score = 189 bits (481), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 186/362 (51%), Gaps = 33/362 (9%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNTAS------WFTALTQHGK-EDLKFPRGQGVP 73 +D T QN G R++ ++ NT S WF+ +TQ K ++ +F GQGVP Sbjct 31 ADQTERGQNNGNRGRRNQPKQTATTQPNTGSVVPHYSWFSGITQFQKGKEFQFAGGQGVP 90 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I P +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG +G + +G+ W Sbjct 91 IANGIPPSEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASFGDSIEGVFW 150 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA A I R+P+++ AI + GT LP+GFY EGS + AS S Sbjct 151 VANSQADTNTSADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N SS PA +A L+L +L K +G+ +Q VTK+SA Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKL----GKDAGQPKQ-----VTKQSAK 261 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFPILAELA 318 Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+ AFF S++ + E T L Y+GA++ D P F+ + +LN++++A Sbjct 319 PTPGAFFFGSKLELVKKNSGGVDEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378 Query 360 YK 361 Y+ Sbjct 379 YQ 380 >sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain NJ) OX=231433 GN=N PE=3 SV=1 Length=454 Score = 189 bits (481), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 172/326 (53%), Gaps = 27/326 (8%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI +Q GY+ R RR + DG+ K L PRW Sbjct 67 SWFSGITQFQKGKEFQFADGQGVPIANGIPATEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLP 168 YFYYLGTGP AG YG + +G+ WVA A + I R+P+++ AI + GT LP Sbjct 127 YFYYLGTGPHAGAIYGDSIEGVFWVANSQADTNTRADIVERDPSSHEAIPTRFAPGTVLP 186 Query 169 KGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLN 228 +GFY EGS + AS S N SS PA +A L+L +L Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPSNRARSSSNQRQPASTVKPDMAEEIAALVLAKLG 246 Query 229 QLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQG 284 + GQ +Q VTK+SA E + KPRQKRT K V Q FG+RGP Q Sbjct 247 K------DAGQPKQ---VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294 Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYTG 335 NFG E+++ GT +P +A+ AP+ AFF S++ + E T L Y+G Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTPGAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 354 Query 336 AIKLDDKDPNFKDQVILLNKHIDAYK 361 AI+ D P F+ + +LN++++AY+ Sbjct 355 AIRFDSTLPGFETIMKVLNENLNAYQ 380 >sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate NC99) OX=202496 GN=N PE=3 SV=1 Length=446 Score = 186 bits (473), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 133/362 (37%), Positives = 191/362 (53%), Gaps = 47/362 (13%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 63 SWFSGITQFQKGKEFQFAEGQGVPIAPGIPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 122 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG N DG+ WVA + A +NTP D + R+P+++ AI + P GT L Sbjct 123 YFYYLGTGPHAKAQYGTNIDGVFWVANKQADVNTPADVV-DRDPSSDEAIPTRFPPGTVL 181 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG--GDAA--LALLL 223 P+G+Y EGS G + S+ +S +S +R S R +G D A +A L+ Sbjct 182 PQGYYIEGS--GRSVPNSRSTSRASSRASSAGSRNRSNSGTRTPTSGVTSDMADQIASLV 239 Query 224 LDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGP 279 L +L + +K Q VTK++A E + KPRQKR+ K V Q FG+RGP Sbjct 240 LAKLGKDATKP---------QQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGP 290 Query 280 EQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTP--SGTW------- 330 Q NFG E+++ GT +P +A+ AP+A AFF SR+ + SG + Sbjct 291 NQ---NFGGAEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNFDEPQKDV 347 Query 331 --LTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKK 388 L Y GAI+ D P F+ + +LN++++AY+ ++ PQRQ+ Sbjct 348 YELRYNGAIRFDSTLPGFETIMKVLNENLNAYQ----------QQDDGTNMSPKPQRQRG 397 Query 389 QQ 390 QQ Sbjct 398 QQ 399 >sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain LSU-94LSS-051) OX=233261 GN=N PE=3 SV=1 Length=448 Score = 177 bits (448), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 182/339 (54%), Gaps = 49/339 (14%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217 P+G+Y EGS S +S + SRSR +S N TP S G +P MA Sbjct 183 PQGYYIEGSGRSAPNSRSTSRTSSRASSAGSRSRANSGNRTPTS--GVTP-DMADQ---- 235 Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273 +A L+L +L + +K Q VTK++A E + KPRQKR+ K V Q Sbjct 236 -IASLVLAKLGKDATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285 Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322 FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ + Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342 Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 E L Y GAI+ D F+ + +LN++++AY+ Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381 >sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain OK-0514) OX=231432 GN=N PE=3 SV=1 Length=448 Score = 176 bits (447), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 182/339 (54%), Gaps = 49/339 (14%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217 P+G+Y EGS S +S + SRSR +S N TP S G +P MA Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTS--GVTPD-MADQ---- 235 Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273 +A L+L +L + +K Q VTK++A E + KPRQKR+ K V Q Sbjct 236 -IASLVLAKLGKDATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285 Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322 FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ + Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342 Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 E L Y GAI+ D F+ + +LN++++AY+ Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381 >sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain Quebec) OX=11133 GN=N PE=3 SV=1 Length=448 Score = 176 bits (447), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 182/339 (54%), Gaps = 49/339 (14%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217 P+G+Y EGS S +S + SRSR +S N TP S G +P MA Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTS--GVTPD-MADQ---- 235 Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273 +A L+L +L + +K Q VTK++A E + KPRQKR+ K V Q Sbjct 236 -IASLVLAKLGKDATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285 Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322 FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ + Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342 Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 E L Y GAI+ D F+ + +LN++++AY+ Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381 >sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain Mebus) OX=11132 GN=N PE=1 SV=1 Length=448 Score = 176 bits (447), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 182/339 (54%), Gaps = 49/339 (14%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217 P+G+Y EGS S +S + SRSR +S N TP S G +P MA Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTS--GVTPD-MADQ---- 235 Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273 +A L+L +L + +K Q VTK++A E + KPRQKR+ K V Q Sbjct 236 -IASLVLAKLGKDATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285 Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322 FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ + Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342 Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 E L Y GAI+ D F+ + +LN++++AY+ Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381 >sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain LY-138) OX=11131 GN=N PE=3 SV=1 Length=448 Score = 176 bits (447), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 181/339 (53%), Gaps = 49/339 (14%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217 P+G+Y EGS S +S + SRSR S N TP S G +P MA Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRADSGNRTPTS--GVTP-DMADQ---- 235 Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273 +A L+L +L + +K Q VTK++A E + KPRQKR+ K V Q Sbjct 236 -IASLVLAKLGKDATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285 Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322 FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ + Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342 Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 E L Y GAI+ D F+ + +LN++++AY+ Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381 >sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=N PE=3 SV=1 Length=448 Score = 176 bits (446), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 132/339 (39%), Positives = 183/339 (54%), Gaps = 49/339 (14%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVYWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217 P+G+Y EGS S +S + SRSR +S N TP S G +P MA Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTS--GVTP-DMADQ---- 235 Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273 +A L+L +L K + K QQ VTK++A E + KPRQKR+ K V Q Sbjct 236 -IASLVLAKL----GKDAAKPQQ-----VTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285 Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322 FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ + Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342 Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 E L Y GAI+ D F+ + +LN++++AY+ Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381 >sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=N PE=3 SV=1 Length=448 Score = 176 bits (446), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 132/339 (39%), Positives = 183/339 (54%), Gaps = 49/339 (14%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVYWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217 P+G+Y EGS S +S + SRSR +S N TP S G +P MA Sbjct 183 PQGYYIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTS--GVTP-DMADQ---- 235 Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273 +A L+L +L K + K QQ VTK++A E + KPRQKR+ K V Q Sbjct 236 -IASLVLAKL----GKDAAKPQQ-----VTKQTAKEIRQKILNKPRQKRSPNKQCTVQQC 285 Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322 FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ + Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLD 342 Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 E L Y GAI+ D F+ + +LN++++AY+ Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381 >sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain F15) OX=11129 GN=N PE=3 SV=1 Length=448 Score = 175 bits (443), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 124/329 (38%), Positives = 177/329 (54%), Gaps = 29/329 (9%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTRDGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227 P+G+Y EGS G A + S+ +S +S SR S R +G +A ++ + Sbjct 183 PQGYYIEGS--GRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIVSLV 240 Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQ 283 K + K QQ VTK++A E + KPRQKR+ K V Q FG+RGP Q Sbjct 241 LAKLGKDATKPQQ-----VTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ-- 293 Query 284 GNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLT 332 NFG E+++ GT +P +A+ AP+A AFF SR+ + E L Sbjct 294 -NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELR 352 Query 333 YTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 Y GAI+ D F+ + +LN++++AY+ Sbjct 353 YNGAIRFDSTLSGFETIMKVLNENLNAYQ 381 >sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43 OX=31631 GN=N PE=1 SV=1 Length=448 Score = 170 bits (431), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 128/339 (38%), Positives = 179/339 (53%), Gaps = 49/339 (14%) Query 51 SWFTALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATR-RIRGGDGKMKDLSPRW 108 SWF+ +TQ K ++ +F GQG PI + GY+ R R + DG + L PRW Sbjct 64 SWFSGITQFQKGKEFEFVEGQGPPIAPGVPATEAKGYWYRHNRGSFKTADGNQRQLLPRW 123 Query 109 YFYYLGTGPEAGLPYGANKDGIIWVATEGA-LNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 YFYYLGTGP A YG + DG+ WVA+ A +NTP D I R+P+++ AI + P GT L Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVYWVASNQADVNTPAD-IVDRDPSSDEAIPTRFPPGTVL 182 Query 168 PKGFYAEGS----------RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDA 217 P+G+Y EGS S +S + SRSR +S N TP S G +P MA Sbjct 183 PQGYYIEGSGRSAPNSRSTSRTSSRASSAGSRSRANSGNRTPTS--GVTP-DMADQ---- 235 Query 218 ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQA 273 +A L+L +L + +K Q VTK +A E + KPRQKR+ K V Q Sbjct 236 -IASLVLAKLGKDATKP---------QQVTKHTAKEVRQKILNKPRQKRSPNKQCTVQQC 285 Query 274 FGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM----------- 322 FG+RGP Q NFG E+++ GT +P +A+ AP+A AFF SR+ + Sbjct 286 FGKRGPNQ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPD 342 Query 323 EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYK 361 E L Y GAI+ D F+ + +LN++++AY+ Sbjct 343 EPQKDVYELRYNGAIRFDSTLSGFETIMKVLNENLNAYQ 381 >sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain Minnesota) OX=231430 GN=N PE=3 SV=1 Length=409 Score = 121 bits (304), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/336 (29%), Positives = 150/336 (45%), Gaps = 24/336 (7%) Query 50 ASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107 ASWF A+ + KF G GVP N N P Q GY+RR R + G K + Sbjct 33 ASWFQAIKAKKLNSPPPKF-EGSGVPDNENLKPGQQHGYWRRQAR-FKPSKGGRKPVPDA 90 Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P L+ G Sbjct 91 WYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRFSDG--- 147 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227 G G + +R R+ + ++ +P+R G + L+ R Sbjct 148 -------GPDGNFRWDFIPLNRGRSGRSTAASSAASTRAPSREGSRGRRSGSEDDLIARA 200 Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287 ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG Sbjct 201 AKII-----QDQQRKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFG 254 Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347 D ++ +G + PS+ A SR+ ++ P G L + + DP F Sbjct 255 DDKMNEEGITDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFD 314 Query 348 DQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALP 383 + V + ++ ID T PK D+ K + + P Sbjct 315 NYVKICDQCIDGVG----TRPKDDEPKPKSRSSSRP 346 >sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=N PE=1 SV=1 Length=377 Score = 120 bits (300), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 102/320 (32%), Positives = 165/320 (52%), Gaps = 27/320 (8%) Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140 D QIGY+ R R R G+ K+L+ RW+FY+LGTGP A + DG+ WVA +GA+N Sbjct 64 DQQIGYWNRQIR-YRIVKGQRKELAERWFFYFLGTGPHADAKFKDKIDGVFWVARDGAMN 122 Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200 P +GTR NN + L+ +P F E +R S+ +SRS S+SR+ SRN + Sbjct 123 KPT-TLGTRG-TNNESKPLRF--DGKIPPQFQLEVNR--SRNNSRSGSQSRSVSRNRS-- 174 Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQ 260 SRG + N + + + +L++L + + S +++ + + + + + K Sbjct 175 QSRGRHHSNNQNNNVEDTI-VAVLEKLGVTDKQRSRSKPRERSDSKPRDTTPKNANKHTW 233 Query 261 KRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRI 320 K+TA K +VT +G R + NFGD +L+ G K +PQIA+ PS S+ S+ Sbjct 234 KKTAGKG-DVTTFYGARS---SSANFGDSDLVANGNAAKCYPQIAECVPSVSSIIFGSQW 289 Query 321 GMEVTPSGTWLTYTGAIKL---DDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKAD 377 E +T T L D K F +Q IDAYK P+E KD++++ Sbjct 290 SAEEAGDQVKVTLTHTYYLPKDDAKTSQFLEQ-------IDAYKR--PSEVAKDQRQRRS 340 Query 378 ETQALPQRQKKQQTVTLLPA 397 +++ ++ ++ +VTL+ A Sbjct 341 RSKS-ADKKPEELSVTLVEA 359 >sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis virus (strain Vic S) OX=231428 GN=N PE=2 SV=1 Length=409 Score = 119 bits (299), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 97/317 (31%), Positives = 142/317 (45%), Gaps = 20/317 (6%) Query 50 ASWFTALTQHGKEDLKFPR--GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107 ASWF A+ K ++ P+ G GVP N N P Q GY+RR R G G+ K + Sbjct 33 ASWFQAIKAK-KLNVPQPKFEGSGVPDNNNIKPSQQHGYWRRQARYKPGKSGR-KPVPDA 90 Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 WYFYY GTGP A L +G N+DGI+WVA +GA + + GTR+P L+ Sbjct 91 WYFYYTGTGPAADLNWGENQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF------ 144 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227 S GG + R N R+ ++ + +R G D L Sbjct 145 --------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSREGSRGRRSGAEDDL 196 Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287 +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG Sbjct 197 IARAAKII-QDQQKRGSRITKAKADEMAHRRYCKRTIPPGYRVDQVFGPRT-KGKEGNFG 254 Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347 D ++ +G PS+ A SR+ ++ P G L + + DP F Sbjct 255 DDKMNEEGIKDGRVTATLNLIPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFD 314 Query 348 DQVILLNKHIDAYKTFP 364 + V + ++ +D T P Sbjct 315 NYVKICDQCVDGVGTRP 331 >sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis virus (strain KB8523) OX=11126 GN=N PE=3 SV=1 Length=409 Score = 119 bits (297), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/327 (29%), Positives = 147/327 (45%), Gaps = 20/327 (6%) Query 50 ASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107 ASWF A+ + LKF G GVP N N Q GY+RR R + G K + Sbjct 33 ASWFQAIKAKKLNSPPLKF-EGSGVPDNENLKTSQQHGYWRRQAR-FKPSKGGRKPVPDA 90 Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P L+ G Sbjct 91 WYFYYTGTGPAADLNWGDSQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRFSDG--- 147 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227 G G + +R R+ + ++ +P+R G + L+ R Sbjct 148 -------GPDGNFRWDFIPLNRGRSGKSTAASSAASSRAPSREGSRGRRSGAEDDLIARA 200 Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287 ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG Sbjct 201 AKII-----QDQQKKGARITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFG 254 Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347 D ++ +G + PS+ A SR+ ++ P G L + + DP F Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVSRNDPQFD 314 Query 348 DQVILLNKHIDAYKTFPPTEPKKDKKK 374 + V + ++ +D T P + K K + Sbjct 315 NYVKICDQCVDGVGTRPKDDEPKPKSR 341 >sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis virus (strain V18/91) OX=231427 GN=N PE=2 SV=1 Length=409 Score = 118 bits (295), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 93/346 (27%), Positives = 158/346 (46%), Gaps = 25/346 (7%) Query 50 ASWFTALTQHGKEDLKFP---RGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSP 106 ASWF +L + K+ P G GVP N+N P Q GY++R R + G G K ++ Sbjct 34 ASWFQSLKE--KKRTGTPPTFEGSGVPDNSNVKPQFQHGYWKR-QHRYKPGKGGRKPVAD 90 Query 107 RWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTT 166 WYFYY GTGP L +G + D ++WV +GA + + G R+P L+ +G Sbjct 91 AWYFYYTGTGPFGDLKWGDSNDDVVWVKAKGADTSKIGNYGVRDPDKFDQAPLRFTEGG- 149 Query 167 LPKGFYAEGSRGGSQASSRSSS--RSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLL 224 P Y ++ SR+SS SR +SR + SSRG +R+ + D A +++ Sbjct 150 -PDNNYRWDFIALNRGRSRNSSAVTSRENSRPGSRDSSRGRQRSRVDDDLIDRAAKIIMQ 208 Query 225 DRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQG 284 QQ+ G ++K+ A E +++ KR + + FG+R Q Sbjct 209 --------------QQKNGSRISKQKANEMAERKYHKRAIAPGKRIDEVFGQRRKGQAP- 253 Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDP 344 NFGD ++I +G + P+ A S + ++ P G + ++ + +DP Sbjct 254 NFGDDKMIEEGVKDGRLTAMLNLVPTPHACLLGSMVTAKLQPDGLHVRFSFETVVKREDP 313 Query 345 NFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390 F + + ++ +D T P +P + + + + P K+Q+ Sbjct 314 QFANYSKICDECVDGVGTRPKDDPTPRSRAASKDRNSAPATPKQQR 359 >sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis virus (strain Gray) OX=31624 GN=N PE=1 SV=2 Length=409 Score = 117 bits (292), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 154/361 (43%), Gaps = 40/361 (11%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP R P+ + ASWF A+ + KF G Sbjct 14 APVIKLGGP-------------------RPPKVGSSGNASWFQAIKAKKLNSPQPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N Q GY+RR R + G G+ K + WYFYY GTGP A L +G ++DG Sbjct 54 SGVPDNENFKTSQQHGYWRRQAR-FKPGKGRRKPVPDAWYFYYTGTGPAADLNWGDSQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WVA +GA + + GTR+P L+ S GG + R Sbjct 113 IVWVAAKGADVKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R G D L +K+ + QQ++G +TK Sbjct 159 PLNRGRSGRSTAASSAASSRPPSREGSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPP-TEP 368 S+ A SR+ ++ P G L + + DP F + V + ++ +D T P EP Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 369 K 369 K Sbjct 337 K 337 >sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis virus (strain SAIB20) OX=231426 GN=N PE=2 SV=1 Length=409 Score = 115 bits (288), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 153/361 (42%), Gaps = 40/361 (11%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP R P+ + ASWF A+ + KF G Sbjct 14 APVIKLGGP-------------------RPPKVGSSGNASWFQAIKAKKLNSPQPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N Q GY+RR R + G G K + WYFYY GTGP A L +G ++DG Sbjct 54 SGVPDNENLKTSQQHGYWRRQAR-FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WVA +GA + + GTR+P L+ S GG + R Sbjct 113 IVWVAAKGADVKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R G D L +K+ + QQ++G +TK Sbjct 159 PLNRGRSGRSTAASSAASSRPPSREGSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPP-TEP 368 S+ A SR+ ++ P G L + + DP F + V + ++ +D T P EP Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 369 K 369 K Sbjct 337 K 337 >sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis virus (strain Arkansas 99) OX=231471 GN=N PE=3 SV=1 Length=409 Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/319 (30%), Positives = 141/319 (44%), Gaps = 24/319 (8%) Query 50 ASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRR--IRGGDGKMKDLS 105 ASWF A+ + KF G GVP N N Q GY+RR R ++GG + D Sbjct 33 ASWFQAIKAKKLNSHPPKF-EGSGVPDNENLKTSQQHGYWRRQARFKPVKGGRKPVPDA- 90 Query 106 PRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGT 165 WYFYY GTGP A L +G ++DGI+WVA +GA + H GTR+P L+ Sbjct 91 --WYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSHQGTRDPDKFDQYPLRF---- 144 Query 166 TLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLD 225 S GG + R N R+ ++ + +R G D Sbjct 145 ----------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSRDGSRGRRSGSED 194 Query 226 RLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN 285 L +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GN Sbjct 195 DLIARAAKII-QDQQKKGSRITKVKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGN 252 Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPN 345 FGD ++ +G + PS+ A SR+ ++ P G L + + DP Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQ 312 Query 346 FKDQVILLNKHIDAYKTFP 364 F + V + ++ +D T P Sbjct 313 FDNYVKICDQCVDGVGTRP 331 >sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis virus (strain D1466) OX=231472 GN=N PE=3 SV=1 Length=409 Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 95/319 (30%), Positives = 140/319 (44%), Gaps = 24/319 (8%) Query 50 ASWFTALTQHGKEDLKFP----RGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLS 105 ASWF AL + L P G GVP N N Q GY+RR R + G G K + Sbjct 33 ASWFQALKA---KKLNSPPPKFEGSGVPDNENLKLSQQHGYWRRQAR-YKPGKGGRKSVP 88 Query 106 PRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGT 165 WYFYY GTGP A L +G ++DGI+WV+ +GA + + GTR+P L+ Sbjct 89 DAWYFYYTGTGPAADLNWGYSQDGIVWVSAKGADTKSRSNQGTRDPDKFDQYPLRF---- 144 Query 166 TLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLD 225 S GG + R N R+ ++ + +R G D Sbjct 145 ----------SDGGPDGNFRWDFIPINRGRSGRSTAASSAASSRAPSRDGSRGRRSGAED 194 Query 226 RLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN 285 L +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GN Sbjct 195 DLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KCKEGN 252 Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPN 345 FGD ++ +G + PS+ A SR+ ++ P G L + + DP Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFEFTTVVSRDDPQ 312 Query 346 FKDQVILLNKHIDAYKTFP 364 F + V + ++ +D T P Sbjct 313 FDNYVKICDQCVDGVGTRP 331 >sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis virus (strain H120) OX=231424 GN=N PE=3 SV=1 Length=409 Score = 114 bits (285), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 95/319 (30%), Positives = 140/319 (44%), Gaps = 24/319 (8%) Query 50 ASWFTALTQHGKEDLKFP----RGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLS 105 ASWF AL + L P G GVP N N Q GY+RR R + G G K + Sbjct 33 ASWFQALKA---KKLNSPPPKFEGSGVPDNENLKLSQQHGYWRRQAR-YKPGKGGKKSVP 88 Query 106 PRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGT 165 WYFYY GTGP A L +G ++DGI+WV+ +GA + + GTR+P L+ Sbjct 89 DAWYFYYTGTGPAADLNWGDSQDGIVWVSAKGADTKSRSNQGTRDPDKFDQYPLRF---- 144 Query 166 TLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLD 225 S GG + R N R+ ++ + +R G D Sbjct 145 ----------SDGGPDGNFRWDFIPINRGRSGRSTAASSAASSRAPSRDGSRGRRSGAED 194 Query 226 RLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN 285 L +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GN Sbjct 195 DLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGN 252 Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPN 345 FGD ++ +G + PS+ A SR+ ++ P G L + + DP Sbjct 253 FGDDKMNEEGIKDGRVIAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFEFTTVVSRDDPQ 312 Query 346 FKDQVILLNKHIDAYKTFP 364 F + V + ++ +D T P Sbjct 313 FDNYVKICDQCVDGVGTRP 331 >sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis virus (strain Beaudette US) OX=160750 GN=N PE=1 SV=1 Length=409 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/327 (30%), Positives = 144/327 (44%), Gaps = 20/327 (6%) Query 50 ASWFTALTQHGKEDLKFPR--GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107 ASWF A+ K + P+ G GVP N N P Q GY+RR R + G G K + Sbjct 33 ASWFQAIKAK-KLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDA 90 Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 WYFYY GTGP A L +G +DGI+WVA +GA + + GTR+P L+ Sbjct 91 WYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF------ 144 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227 S GG + R N R+ ++ + +R G D L Sbjct 145 --------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDL 196 Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287 +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG Sbjct 197 IARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFG 254 Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347 D ++ +G + PS+ A SR+ ++ G L + + DP F Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFD 314 Query 348 DQVILLNKHIDAYKTFPPTEPKKDKKK 374 + V + ++ +D T P + K K + Sbjct 315 NYVKICDQCVDGVGTRPKDDEPKPKSR 341 >sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=N PE=1 SV=1 Length=409 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/327 (30%), Positives = 144/327 (44%), Gaps = 20/327 (6%) Query 50 ASWFTALTQHGKEDLKFPR--GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107 ASWF A+ K + P+ G GVP N N P Q GY+RR R + G G K + Sbjct 33 ASWFQAIKAK-KLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDA 90 Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 WYFYY GTGP A L +G +DGI+WVA +GA + + GTR+P L+ Sbjct 91 WYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF------ 144 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227 S GG + R N R+ ++ + +R G D L Sbjct 145 --------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDL 196 Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287 +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG Sbjct 197 IARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFG 254 Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347 D ++ +G + PS+ A SR+ ++ G L + + DP F Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFD 314 Query 348 DQVILLNKHIDAYKTFPPTEPKKDKKK 374 + V + ++ +D T P + K K + Sbjct 315 NYVKICDQCVDGVGTRPKDDEPKPKSR 341 >sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=N PE=1 SV=1 Length=409 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/327 (30%), Positives = 144/327 (44%), Gaps = 20/327 (6%) Query 50 ASWFTALTQHGKEDLKFPR--GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107 ASWF A+ K + P+ G GVP N N P Q GY+RR R + G G K + Sbjct 33 ASWFQAIKAK-KLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDA 90 Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 WYFYY GTGP A L +G +DGI+WVA +GA + + GTR+P L+ Sbjct 91 WYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF------ 144 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227 S GG + R N R+ ++ + +R G D L Sbjct 145 --------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDL 196 Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287 +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG Sbjct 197 IARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFG 254 Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347 D ++ +G + PS+ A SR+ ++ G L + + DP F Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFD 314 Query 348 DQVILLNKHIDAYKTFPPTEPKKDKKK 374 + V + ++ +D T P + K K + Sbjct 315 NYVKICDQCVDGVGTRPKDDEPKPKSR 341 >sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain NC95) OX=231431 GN=N PE=3 SV=1 Length=409 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/317 (29%), Positives = 140/317 (44%), Gaps = 20/317 (6%) Query 50 ASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107 ASWF ++ + KF G GVP N N Q GY+RR R + G G K + Sbjct 33 ASWFQSIKAKKLNSPQPKF-EGSGVPDNENIKTSQQHGYWRRQAR-FKPGKGGRKPVPDA 90 Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 WYFYY GTGP A L +G +DGI+WVA +GA + + GTR+P L+ Sbjct 91 WYFYYTGTGPAADLNWGDTQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRF------ 144 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227 S GG ++ R + R+ ++ + +R G D L Sbjct 145 --------SDGGPDSNFRWDFIPLHRGRSGRSTAASSAASSRAPSRDGSRGRRSGSEDDL 196 Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287 +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG Sbjct 197 IARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTVPPGYKVDQVFGPRT-KGKEGNFG 254 Query 288 DQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFK 347 D ++ +G + PS+ A SR+ ++ P G L + + DP F Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFEFTTVVPRDDPQFD 314 Query 348 DQVILLNKHIDAYKTFP 364 + V + ++ +D T P Sbjct 315 NYVTICDQCVDGIGTRP 331 >sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis virus (strain DE072) OX=233265 GN=N PE=3 SV=1 Length=409 Score = 112 bits (279), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 150/325 (46%), Gaps = 36/325 (11%) Query 50 ASWFTALTQHGKEDLKFPR----GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLS 105 ASWF A+ + L P+ G GVP N N Q GY+RR R + G K + Sbjct 33 ASWFQAIKA---KKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQLR-FKPSKGGRKPVP 88 Query 106 PRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGT 165 WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P L+ G Sbjct 89 DAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRFSDGG 148 Query 166 TLPKGFYAEG----SRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGD--AAL 219 P G + +RG ++ +++ S SSR + SRG R +G+ GD A Sbjct 149 --PDGNFRWDFIPLNRG--RSGRSTAASSAASSRAPSRDGSRG----RRSGSEGDLIARA 200 Query 220 ALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGP 279 A ++ D QQ++G +TK A E + + KRT Y V Q FG R Sbjct 201 AKIIQD-------------QQKRGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPR-T 246 Query 280 EQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKL 339 + +GNFGD ++ +G + PS+ A SR+ ++ P G L + Sbjct 247 KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKIEFTTVV 306 Query 340 DDKDPNFKDQVILLNKHIDAYKTFP 364 DP F + V + ++ +D T P Sbjct 307 SRDDPQFDNYVKICDQCVDGVGTRP 331 >sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis virus (strain H52) OX=231425 GN=N PE=2 SV=1 Length=409 Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 141/319 (44%), Gaps = 24/319 (8%) Query 50 ASWFTALTQHGKEDLKFP----RGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLS 105 SWF A+ + L P G GVP N N P Q GY+RR R + G G K + Sbjct 33 VSWFQAIKA---KKLNSPPPKFEGSGVPDNENLKPSQQHGYWRRQAR-FKPGKGGRKPVP 88 Query 106 PRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGT 165 WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+ L+ G Sbjct 89 DAWYFYYTGTGPAANLNWGDSQDGIVWVAGKGADTKFRSNQGTRDSDKFDQYPLRFSDG- 147 Query 166 TLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLD 225 G G + +R R+ + ++ +P+R G + L+ Sbjct 148 ---------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSREVSRGRRSGSEDDLIA 198 Query 226 RLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN 285 R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN Sbjct 199 RAARII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYKVDQVFGPRT-KGKEGN 252 Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPN 345 FGD ++ +G + PS+ A SR+ + P G L + + DP Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPRLQPDGLHLKFEFTTVVPRDDPQ 312 Query 346 FKDQVILLNKHIDAYKTFP 364 F + V + ++ +D T P Sbjct 313 FDNYVKICDQCVDGVGTRP 331 >sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain Indiana) OX=231429 GN=N PE=3 SV=1 Length=409 Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/318 (29%), Positives = 137/318 (43%), Gaps = 20/318 (6%) Query 49 TASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSP 106 + SWF A+ + KF G GVP N N Q GY+RR R + G K + Sbjct 32 SVSWFQAIKAKKLNSPQPKF-EGSGVPDNENLKTSQQHGYWRRQAR-FKSSRGGRKPVPD 89 Query 107 RWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTT 166 WYFYY GTGP A L +G ++ GI+WVA +GA K + GTR+P L+ Sbjct 90 AWYFYYTGTGPAADLQWGDSQAGIVWVAAKGADVKSKSNQGTRDPDKFDQYPLRF----- 144 Query 167 LPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDR 226 S GG + R N R+ + + +R G D Sbjct 145 ---------SDGGPDGNFRWDFIPLNRGRSGRSTAVSSAASSRAPSREGSRGRRSGAEDD 195 Query 227 LNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNF 286 L +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GNF Sbjct 196 LIARAAKII-QDQQKKGSRITKAKAEEMAHRRYCKRTVPPGYKVEQVFGPRT-KGKEGNF 253 Query 287 GDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNF 346 GD ++ +G + PS+ A S++ ++ P G L + + DP F Sbjct 254 GDDKMNEEGIKDGRVTAMLNLVPSSHACLFASKLTPKLQPDGLHLKFEFTTVVPRDDPQF 313 Query 347 KDQVILLNKHIDAYKTFP 364 + V + ++ +D T P Sbjct 314 DNYVSICDQCVDGVGTRP 331 >sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=N PE=3 SV=1 Length=409 Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 97/319 (30%), Positives = 147/319 (46%), Gaps = 24/319 (8%) Query 50 ASWFTALTQHGKEDLKFPR--GQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPR 107 ASWF A+ + K ++ P+ G GVP N N Q GY+RR + G G K + Sbjct 33 ASWFQAIKAN-KLNIPPPKFEGSGVPDNENLKSSQQHGYWRRQAT-FKPGKGGRKPVPDA 90 Query 108 WYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTL 167 WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+ L+ G Sbjct 91 WYFYYTGTGPAANLNWGDSQDGIVWVAGKGADTKFRSNQGTRDSDKFDQYPLRFSDGGPD 150 Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGD--AALALLLLD 225 + G ++ +++ S SSR + SRG R +G+ D A A ++ D Sbjct 151 GNFRWDFIPLNGGRSGRSTAASSAASSRAPSREVSRG----RRSGSEDDLIARAARIIQD 206 Query 226 RLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGN 285 QQ++G +TK A E + + KRT Y V Q FG R + +GN Sbjct 207 -------------QQKKGSRITKAKADEMAHRRYCKRTIPPNYKVDQVFGPRT-KGKEGN 252 Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPN 345 FGD ++ +G + PS+ A SR+ ++ P G L + + DP Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQ 312 Query 346 FKDQVILLNKHIDAYKTFP 364 F + V + ++ +D T P Sbjct 313 FDNYVKICDQCVDGVGTRP 331 >sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain FS772/70) OX=11150 GN=N PE=1 SV=1 Length=382 Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 43/335 (13%) Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140 D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122 Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200 P +G+R ANN + L+ +P F E + + S S Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLE-------VNQSRDNSRSRSQSRSRSR 171 Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQ 260 + + + + N D ++ +L L +L G ++Q Q KS ++ K R Sbjct 172 NRSQSRGRQQSNNKKDDSVEQAVLAALKKL-----GVDTEKQQQRSCSKSKERSNSKTRD 226 Query 261 -----------KRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ P Sbjct 227 TTPKNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVP 282 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S S+ S + +T+T L DP K + L + I+AY P+E Sbjct 283 SVSSILFGSYWTSKEDGDQIEVTFTHKYHLPKDDP--KTEQFL--QQINAYAR--PSEVA 336 Query 370 KDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 K+++K+ +++ + +++ ++P A +++++ Sbjct 337 KEQRKRKSRSKSAERSEQE-----VVPDALIENYT 366 >sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain BGF10) OX=441619 GN=N PE=3 SV=1 Length=382 Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 136/284 (48%), Gaps = 33/284 (12%) Query 72 VPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 VP+ + D QIGY+ R R R G+ KDL RW+FYYLGTGP A + DG++ Sbjct 56 VPLKIGNK-DQQIGYWNRQIR-YRMVKGQRKDLPERWFFYYLGTGPHADAKFKQKLDGVV 113 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR 191 WVA EGA+ P +GTR NN + L+ +P F E +Q+ S SRS+ Sbjct 114 WVAKEGAMTKPTT-LGTRG-TNNESKALKF--DVKVPSEFQLE----VNQSRDNSRSRSQ 165 Query 192 NSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSA 251 + S++ T SRG + + N D ++ +L L +L G ++Q Q KS Sbjct 166 SRSQSRTRAQSRGR---QQSNNKKDDSVEQAVLAALKKL-----GVDTEKQQQRARSKSK 217 Query 252 AEASKKPRQ-----------KRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 ++ K R KRTA K +VT+ +G R + NFGD +L+ G KH Sbjct 218 ERSNSKTRDTTPKNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNSAKH 273 Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDP 344 +PQ+A+ PS S+ S + +T+T L DP Sbjct 274 YPQLAECVPSVSSILFGSHWTAKEDGDQIEVTFTHKYHLPKDDP 317 >sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain K378) OX=33732 GN=N PE=3 SV=1 Length=382 Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/274 (32%), Positives = 130/274 (47%), Gaps = 30/274 (11%) Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140 D QIGY+ R +R R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N Sbjct 64 DQQIGYWNRQSR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDRIDGVVWVAKDGAMN 122 Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRG----------GSQASSRSSSRS 190 P +G R ANN + L+ +P F E ++ SQ+ +RS SR Sbjct 123 KPTT-LGNRG-ANNESKALKF--DGKVPGEFQLEVNQSRDNSRSPSQSRSQSRNRSQSRG 178 Query 191 RNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKS 250 R S N S A + AAL L +D Q + S +++ + T+ + Sbjct 179 RQQSNNKKDDS---VEQAVL------AALKKLGVDTEKQQQRSRS--KSKERSNSKTRDT 227 Query 251 AAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPS 310 + K KRTA K +VT+ +G R + NFGD +L+ G KH+PQ+A+ PS Sbjct 228 TPKNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNGAKHYPQLAECVPS 283 Query 311 ASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDP 344 S+ S + +T+T L DP Sbjct 284 VSSILFGSYWTAKEDGDQIEVTFTHKYHLPKDDP 317 >sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronavirus (strain 86/137004 / isolate British) OX=33736 GN=N PE=3 SV=1 Length=382 Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/330 (27%), Positives = 159/330 (48%), Gaps = 33/330 (10%) Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140 D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122 Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200 P +G+R ANN + L+ +P F E + + S S Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLE-------VNQSRDNSRSRSQSRSRSR 171 Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTVTKKSAAEA 254 + + + + N D ++ +L L +L + + S +++ + T+ + + Sbjct 172 NRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSKTRDTTPKN 231 Query 255 SKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAF 314 K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ PS S+ Sbjct 232 ENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSI 287 Query 315 FGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKK 374 S + +T+T L P K + L + I+AY P+E K+++K Sbjct 288 LFGSYWTSKEDGDQIEVTFTHKYHLPKDHP--KTEQFL--QQINAYAC--PSEVAKEQRK 341 Query 375 KADETQALPQRQKKQQTVTLLPAADLDDFS 404 + +++ + +++ ++P + +++++ Sbjct 342 RKSRSKSAERSEQE-----VVPDSLIENYT 366 >sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronavirus (strain RM4) OX=11148 GN=N PE=3 SV=1 Length=382 Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/330 (27%), Positives = 160/330 (48%), Gaps = 33/330 (10%) Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140 D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122 Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200 P +G+R ANN + L+ +P F E + + S S Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLE-------VNQSRDNSRSRSQSRSRSR 171 Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTVTKKSAAEA 254 + + + + N D ++ +L L +L + + S +++ + T+ + + Sbjct 172 NRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSKTRDTTPKN 231 Query 255 SKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAF 314 K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ PS S+ Sbjct 232 ENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSI 287 Query 315 FGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKK 374 S + +T+T L P K + L + I+AY + P+E K+++K Sbjct 288 LFGSYWTSKEDGDQIEVTFTHKYHLPKDHP--KTEQFL--QQINAYAS--PSELAKEQRK 341 Query 375 KADETQALPQRQKKQQTVTLLPAADLDDFS 404 + +++ + +++ ++P + +++++ Sbjct 342 RKSRSKSAERSEQE-----VVPDSLIENYT 366 >sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=N PE=1 SV=2 Length=382 Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 160/332 (48%), Gaps = 37/332 (11%) Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140 D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122 Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200 P +G+R ANN + L+ +P F E + + S S Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLE-------VNQSRDNSRSRSQSRSRSR 171 Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK---- 256 + + + N D ++ +L L +L + + QQQ+ ++ +K+ + ++ Sbjct 172 NRSQSRGRQQFNNKKDDSVEQAVLAALKKL--GVDTEKQQQRSRSKSKERSNSKTRDTTP 229 Query 257 ----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSAS 312 K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ PS S Sbjct 230 KNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDTDLVANGSSAKHYPQLAECVPSVS 285 Query 313 AFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDK 372 + S + +T+T L DP + + I+AY P+E K++ Sbjct 286 SILFGSYWTSKEDGDQIEVTFTHKYHLPKDDP----KTGQFLQQINAYAR--PSEVAKEQ 339 Query 373 KKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 +K+ +++ ++ +Q V +P A +++++ Sbjct 340 RKRKSRSKSA---ERSEQDV--VPDALIENYT 366 >sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 OX=693999 GN=N PE=1 SV=1 Length=394 Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 141/323 (44%), Gaps = 50/323 (15%) Query 81 DDQIGYYRRATR-RIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGAL 139 D QIGY+ R R+R GD DL W+FY+LGTGP + LP+ DG+ WVA +GA Sbjct 49 DQQIGYWVEQQRWRMRRGD--RVDLPSNWHFYFLGTGPHSDLPFRKRTDGVFWVAIDGAK 106 Query 140 NTPKDHIGTRNPA-------------NNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRS 186 P +G R + NN IV T + G Q++SR Sbjct 107 TQPT-GLGVRKSSEKPLVPKFKNKLPNNVEIVEPT---TPNNSRANSRSRSRGGQSNSRG 162 Query 187 SS-----RSRNSSRNSTPGSSRGTSPARMAGNGGDAALALL--LLDRLNQLESKMSGKGQ 239 +S +SRN SRN + + RG+ + D +A + L+ L +K KG+ Sbjct 163 NSQNRGDKSRNQSRNRSQSNDRGS-------DSRDDLVAAVKKALEDLGVGAAKP--KGK 213 Query 240 QQQGQTVTKKSA-------AEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELI 292 Q G+ K + AEA KP +RT + +V FG RG + NFG E + Sbjct 214 TQSGKNTPKNKSRSGSVQRAEAKDKPEWRRTPSGDESVEVCFGPRGGTR---NFGSSEFV 270 Query 293 RQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVIL 352 +G + + Q A P A+A + + G +TYT + + D N + + Sbjct 271 AKGVNAPGYAQAASLVPGAAALLFGGNVATKEMADGVEITYTYKMLVPKDDKNLE----I 326 Query 353 LNKHIDAYKTFPPTEPKKDKKKK 375 +DAYK P +K K+ + Sbjct 327 FLAQVDAYKLGDPKPQRKVKRSR 349 >sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain Insavc-1) OX=36391 GN=N PE=3 SV=1 Length=381 Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 84/264 (32%), Positives = 132/264 (50%), Gaps = 11/264 (4%) Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140 D QIGY+ R TR R G+ K+L +W+FYYLGTGP A + DG++WVA ++ Sbjct 64 DQQIGYWNRQTR-YRMVKGRRKNLPEKWFFYYLGTGPHADAKFKQKLDGVVWVARGDSMT 122 Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200 P +GTR NN + L+ +P F+ E ++ + SRS SRS++ +R+ + G Sbjct 123 KPTT-LGTRG-TNNESKALKF--DVKVPSEFHLEVNQLRDNSRSRSQSRSQSRNRSQSRG 178 Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQ 260 R S + N A LA L ++ + + S +++ + T+ + + K Sbjct 179 --RQLSNNKKDDNVEQAVLAALKKLGVDTEKQQRSRSKSKERSSSKTRDTTPKNENKHTW 236 Query 261 KRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRI 320 KRTA K +VT+ +G R + NFGD +L+ G KH+PQ+A+ PS S+ S Sbjct 237 KRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNGAKHYPQLAECVPSVSSILFGSHW 292 Query 321 GMEVTPSGTWLTYTGAIKLDDKDP 344 + +T+T L DP Sbjct 293 TAKEDGDQIEVTFTHKYHLPKDDP 316 >sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E OX=11137 GN=N PE=1 SV=2 Length=389 Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 87/302 (29%), Positives = 128/302 (42%), Gaps = 38/302 (13%) Query 72 VPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 VPIN + IGY+ +R R GK DLSP+ +FYYLGTGP + +G++ Sbjct 44 VPINKKDK-NKLIGYWN-VQKRFRTRKGKRVDLSPKLHFYYLGTGPHKDAKFRERVEGVV 101 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVL---QLPQGTTLPKGFYAEGSRG----GSQASS 184 WVA +GA P + G R + I +LP G T+ SR S++ S Sbjct 102 WVAVDGAKTEPTGY-GVRRKNSEPEIPHFNQKLPNGVTV---VEEPDSRAPSRSQSRSQS 157 Query 185 RSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKG------ 238 R S+ SRN P S R + AAL L D+ + + K + G Sbjct 158 RGRGESKPQSRN--PSSDRNHNSQDDIMKAVAAALKSLGFDKPQEKDKKSAKTGTPKPSR 215 Query 239 ------QQQQGQTVTKKSAAEASK------KPRQKRTATKAY--NVTQAFGRRGPEQTQG 284 Q +++ + ++E + KPR KR NVTQ F GP Sbjct 216 NQSPASSQTSAKSLARSQSSETKEQKHEMQKPRWKRQPNDDVTSNVTQCF---GPRDLDH 272 Query 285 NFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDP 344 NFG ++ G K +PQ A+ PS +A S I + + + LT+T + + P Sbjct 273 NFGSAGVVANGVKAKGYPQFAELVPSTAAMLFDSHIVSKESGNTVVLTFTTRVTVPKDHP 332 Query 345 NF 346 + Sbjct 333 HL 334 >sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=N PE=1 SV=1 Length=441 Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 142/349 (41%), Gaps = 69/349 (20%) Query 72 VPINTNSSPDDQIGYYRRATR-RIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGI 130 VP N + D QIGY+ R R+R G+ +++ S W+FYYLGTGP L Y +G+ Sbjct 39 VPTNKGNK-DQQIGYWNEQIRWRMRRGE-RIEQPS-NWHFYYLGTGPHGDLRYRTRTEGV 95 Query 131 IWVATEGALNTPKDHIGTRNPANNAAI---------VLQLPQGTTLPKGFYAEGSRGGSQ 181 WVA EGA P + +G R + I V+++ + T P SR Sbjct 96 FWVAKEGAKTEPTN-LGVRKASEKPIIPKFSQQLPSVVEIVEPNTPPASRANSRSRSRGN 154 Query 182 ASSRSSSRSRNSSRNSTPGSS--RGTSPARMAGN-------------------------G 214 ++RS S S N N + G+S RG + R A G Sbjct 155 GNNRSRSPSNNRGNNQSRGNSQNRGNNQGRGASQNRGGNNNNNNKSRNQSNNRNQSNDRG 214 Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQ--------------GQTVTKKSAAEASKK--- 257 G + L+ + L+S G+ + G+ KK+ + A+ K Sbjct 215 GVTSRDDLVAAVKDALKSLGIGENPDRHKQQQKPKQEKSDNSGKNTPKKNKSRATSKERD 274 Query 258 ----PRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASA 313 P +R +V FG RG + NFGD E + +G D + QIA AP+ +A Sbjct 275 LKDIPEWRRIPKGENSVAACFGPRGGFK---NFGDAEFVEKGVDASGYAQIASLAPNVAA 331 Query 314 FFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKT 362 + + +TY + + DPN V LL +DA+KT Sbjct 332 LLFGGNVAVRELADSYEITYNYKMTVPKSDPN----VELLVSQVDAFKT 376 >sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63 OX=277944 GN=N PE=1 SV=1 Length=377 Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (2%) Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGA 138 D+QIGY+ R R G+ DL P+ +FYYLGTGP L + DG++WVA EGA Sbjct 50 DEQIGYWN-VQERWRMRRGQRVDLPPKVHFYYLGTGPHKDLKFRQRSDGVVWVAKEGA 106 >sp|P11278|PLYP_YERPS Periplasmic pectate lyase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=pelY PE=3 SV=2 Length=572 Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 24/56 (43%), Gaps = 3/56 (5%) Query 237 KGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGP---EQTQGNFGDQ 289 K QQ QG V K A+ PR +T Y TQA R P T FGD+ Sbjct 240 KYQQDQGALVWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTDDADTHSKFGDR 295 >sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens OX=9606 GN=ANK1 PE=1 SV=3 Length=1881 Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust. Identities = 32/108 (30%), Positives = 48/108 (44%), Gaps = 6/108 (6%) Query 130 IIWVATEGALNTPKDHIGTRNP-ANNAAIVLQL-PQGTTLPKGFYAEGSRGGSQASSRSS 187 +I T+G + P HI RN AA++LQ P L K + + + Sbjct 163 LINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVA 222 Query 188 SR--SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESK 233 +R +S N TP G +P +A G+ + LLLDR Q+E+K Sbjct 223 QLLLNRGASVNFTP--QNGITPLHIASRRGNVIMVRLLLDRGAQIETK 268 >sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus OX=10090 GN=Ank1 PE=1 SV=2 Length=1862 Score = 33.1 bits (74), Expect = 6.7, Method: Compositional matrix adjust. Identities = 31/108 (29%), Positives = 48/108 (44%), Gaps = 6/108 (6%) Query 130 IIWVATEGALNTPKDHIGTRNP-ANNAAIVLQL-PQGTTLPKGFYAEGSRGGSQASSRSS 187 +I T+G + P HI RN AA++LQ P L K + + + Sbjct 159 LINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVA 218 Query 188 SR--SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESK 233 +R +S N TP G +P +A G+ + LLLDR Q+E++ Sbjct 219 QLLLNRGASVNFTP--QNGITPLHIASRRGNVIMVRLLLDRGAQIETR 264 >sp|C0LGK4|Y2165_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana OX=3702 GN=At2g16250 PE=1 SV=1 Length=915 Score = 32.7 bits (73), Expect = 7.1, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 44/103 (43%), Gaps = 0/103 (0%) Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 +S+N++ G SR T A GG A + L ++ + + + Q+G K A Sbjct 434 TSKNASSGISRRTVIILAAVGGGVAFILLFVILPIILVLCMRHRRRAAQRGNNDRPKPAG 493 Query 253 EASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQG 295 EAS++P + + AF Q F D LI++G Sbjct 494 EASQQPPKGAQTFDLSRLGNAFSYEQLLQATEEFNDANLIKRG 536 Lambda K H a alpha 0.310 0.128 0.371 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 40990875652 Results from round 2 Query= YP_009724397.2 nucleocapsid phosphoprotein [Severe acute respiratory syndrome coronavirus 2] Length=419 Score E Sequences producing significant alignments: (Bits) Value Sequences used in model and found again: sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory sy... 489 2e-171 sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004 OX... 471 2e-164 sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442... 466 1e-162 sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory syn... 465 9e-162 sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005 OX... 460 4e-160 sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76... 403 5e-137 sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain 1... 401 2e-136 sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain ... 398 4e-135 sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain 3... 397 1e-134 sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain 681... 396 2e-134 sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain ... 396 3e-134 sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain S... 395 5e-134 sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain ... 393 3e-133 sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1 (iso... 391 1e-132 sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis... 389 2e-132 sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain 2... 390 5e-132 sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain NJ)... 390 6e-132 sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis... 387 1e-131 sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1 (iso... 388 2e-131 sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1 (iso... 388 2e-131 sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain ... 386 3e-131 sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis ... 386 5e-131 sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis... 385 8e-131 sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis... 385 8e-131 sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis ... 385 8e-131 sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis ... 385 1e-130 sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis... 383 8e-130 sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain ... 382 1e-129 sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis... 382 2e-129 sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis ... 381 4e-129 sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis... 381 4e-129 sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis... 381 5e-129 sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis... 379 4e-128 sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain ... 377 2e-127 sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate... 369 9e-124 sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain Q... 363 2e-121 sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain M... 363 2e-121 sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating en... 362 2e-121 sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694... 361 7e-121 sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating en... 361 2e-120 sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain ... 360 2e-120 sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain ... 360 3e-120 sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain ... 360 3e-120 sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain ... 359 5e-120 sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain ... 359 7e-120 sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain F... 358 1e-119 sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis... 355 5e-119 sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694... 354 1e-117 sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43 OX=3... 351 5e-117 sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory syn... 344 2e-114 sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694... 340 7e-113 sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005 OX... 340 8e-113 sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain ... 302 8e-99 sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastr... 300 8e-98 sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain ... 300 8e-98 sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronav... 300 1e-97 sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronav... 297 2e-96 sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastr... 297 2e-96 sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain F... 294 2e-95 sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain ... 293 4e-95 sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 OX... 256 2e-80 sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea v... 243 6e-75 sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E OX=1... 232 4e-71 sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63 OX=2... 206 2e-61 Sequences not found previously or not previously below threshold: sp|A9KNW4|IF2_LACP7 Translation initiation factor IF-2 OS=Lachnoc... 44.4 0.002 sp|Q9XIN7|NAC40_ARATH NAC domain-containing protein 40 OS=Arabido... 40.2 0.023 sp|O61345|PENG_DROME Protein penguin OS=Drosophila melanogaster O... 39.8 0.043 sp|Q9NBL2|MSL3_DROVI Protein male-specific lethal-3 OS=Drosophila... 39.4 0.052 sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2 OS=Prochlo... 39.0 0.081 sp|P17029|ZKSC1_HUMAN Zinc finger protein with KRAB and SCAN doma... 38.6 0.11 sp|Q28FY7|DBF4A_XENTR Protein DBF4 homolog A OS=Xenopus tropicali... 37.1 0.31 sp|A8PKH2|EIF3A_BRUMA Eukaryotic translation initiation factor 3 ... 37.1 0.36 sp|Q09779|THO2_SCHPO THO complex subunit 2 OS=Schizosaccharomyces... 36.3 0.64 sp|A2C4P1|IF2_PROM1 Translation initiation factor IF-2 OS=Prochlo... 36.3 0.71 sp|A2BT70|IF2_PROMS Translation initiation factor IF-2 OS=Prochlo... 36.0 0.87 sp|Q5R670|ZKSC1_PONAB Zinc finger protein with KRAB and SCAN doma... 35.2 1.2 sp|P12348|PER_DROPS Period circadian protein OS=Drosophila pseudo... 35.2 1.5 sp|Q46J13|IF2_PROMT Translation initiation factor IF-2 OS=Prochlo... 35.2 1.5 sp|O35893|SP100_MUSCR Nuclear autoantigen Sp-100 OS=Mus caroli OX... 34.4 1.8 sp|Q5UP83|YL004_MIMIV Putative KilA-N domain-containing protein L... 34.4 1.9 sp|Q96A59|MALD3_HUMAN MARVEL domain-containing protein 3 OS=Homo ... 34.4 2.0 sp|Q6NY19|KANK3_HUMAN KN motif and ankyrin repeat domain-containi... 34.4 2.4 sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homol... 34.4 2.4 sp|A2BYM0|IF2_PROM5 Translation initiation factor IF-2 OS=Prochlo... 34.0 3.1 sp|Q3AZB7|IF2_SYNS9 Translation initiation factor IF-2 OS=Synecho... 33.6 4.4 sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=D... 33.3 6.0 sp|B1MZH4|IF2_LEUCK Translation initiation factor IF-2 OS=Leucono... 32.9 6.3 sp|Q9C0D6|FHDC1_HUMAN FH2 domain-containing protein 1 OS=Homo sap... 32.9 6.7 sp|Q38W81|IF2_LATSS Translation initiation factor IF-2 OS=Latilac... 32.9 7.2 sp|Q6P1L5|F117B_HUMAN Protein FAM117B OS=Homo sapiens OX=9606 GN=... 32.5 8.5 sp|Q2UB17|ESF2_ASPOR Pre-rRNA-processing protein esf2 OS=Aspergil... 32.1 8.7 >sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=N PE=1 SV=1 Length=419 Score = 489 bits (1258), Expect = 2e-171, Method: Composition-based stats. Identities = 419/419 (100%), Positives = 419/419 (100%), Gaps = 0/419 (0%) Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG Sbjct 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG Sbjct 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120 Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS Sbjct 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ Sbjct 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA 419 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA Sbjct 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA 419 >sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004 OX=349344 GN=N PE=3 SV=1 Length=421 Score = 471 bits (1212), Expect = 2e-164, Method: Composition-based stats. Identities = 380/421 (90%), Positives = 396/421 (94%), Gaps = 2/421 (0%) Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 MSDNGPQNQR+APRITFGGP+DST +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG Sbjct 1 MSDNGPQNQRSAPRITFGGPTDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60 Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120 KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEAS 120 Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 QASSRSSSRSR +SRNSTPGSSRG SPARMA GG+ ALALLLLDRLNQLESK+SG+ QQ Sbjct 181 QASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGRSQQ 240 Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 QQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDAY Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360 Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418 K FPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADSTQ Sbjct 361 KIFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADSTQ 420 Query 419 A 419 A Sbjct 421 A 421 >sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442736 GN=N PE=3 SV=1 Length=421 Score = 466 bits (1200), Expect = 1e-162, Method: Composition-based stats. Identities = 377/421 (90%), Positives = 396/421 (94%), Gaps = 2/421 (0%) Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 MSDNGPQ+QR+APRITFGGP+DS +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG Sbjct 1 MSDNGPQSQRSAPRITFGGPADSNDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60 Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120 KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEAS 120 Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 Q+SSRSSSRSR +SRNSTPGSSRG+SPAR+A GG+ ALALLLLDRLNQLESK+SGKGQQ Sbjct 181 QSSSRSSSRSRGNSRNSTPGSSRGSSPARLASGGGETALALLLLDRLNQLESKVSGKGQQ 240 Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 Q GQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQELIRQG DYKH Sbjct 241 QPGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGIDYKH 300 Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDAY Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360 Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418 KTFPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADSTQ Sbjct 361 KTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQHSMSGASADSTQ 420 Query 419 A 419 A Sbjct 421 A 421 >sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=N PE=1 SV=1 Length=422 Score = 465 bits (1195), Expect = 9e-162, Method: Composition-based stats. Identities = 382/422 (91%), Positives = 398/422 (94%), Gaps = 3/422 (1%) Query 1 MSDNGPQ-NQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQH 59 MSDNGPQ NQR+APRITFGGP+DST +NQNG R+GAR KQRRPQGLPNNTASWFTALTQH Sbjct 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60 Query 60 GKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEA 119 GKE+L+FPRGQGVPINTNS PDDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA Sbjct 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120 Query 120 GLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGG 179 LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAA VLQLPQGTTLPKGFYAEGSRGG Sbjct 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180 Query 180 SQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQ 239 SQASSRSSSRSR +SRNSTPGSSRG SPARMA GG+ ALALLLLDRLNQLESK+SGKGQ Sbjct 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240 Query 240 QQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYK 299 QQQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK Sbjct 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300 Query 300 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDA Sbjct 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADST 417 YKTFPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADST Sbjct 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420 Query 418 QA 419 QA Sbjct 421 QA 422 >sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005 OX=389167 GN=N PE=3 SV=1 Length=420 Score = 460 bits (1184), Expect = 4e-160, Method: Composition-based stats. Identities = 377/421 (90%), Positives = 394/421 (94%), Gaps = 3/421 (1%) Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 MSDNGPQNQR+APRITFGGPSDST +NQ+G RSGAR KQRRPQGLPNNTASWFTALTQHG Sbjct 1 MSDNGPQNQRSAPRITFGGPSDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHG 60 Query 61 KEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAG 120 KE+L+FPRGQGVPINTNS DDQIGYYRRATRR+RGGDGKMK LSPRWYFYYLGTGPEA Sbjct 61 KEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKKLSPRWYFYYLGTGPEAS 120 Query 121 LPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAAIVLQLPQGTTLPKGFYAEGSRGGS Sbjct 121 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGS 180 Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 QASSRSSSRSR +SRNSTPGSSRG SPARMA G+ ALALLLLDRLNQLESK+SGKGQQ Sbjct 181 QASSRSSSRSRGNSRNSTPGSSRGNSPARMASGSGETALALLLLDRLNQLESKVSGKGQQ 240 Query 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH 300 QQGQTVTKKSAAEASKKPRQKRTATK+YNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK+ Sbjct 241 QQGQTVTKKSAAEASKKPRQKRTATKSYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKY 300 Query 301 WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAY 360 WPQIAQFAPSASAFFGMSRIGMEVTP GTWLTY GAIKLDDKDP FKD VILLNKHIDAY Sbjct 301 WPQIAQFAPSASAFFGMSRIGMEVTPLGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 360 Query 361 KTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADSTQ 418 K FPPTEPKKDKKKK DE Q LPQR+K Q TVTLLPAAD+DDFS+QLQ SMS SADSTQ Sbjct 361 KAFPPTEPKKDKKKKTDEAQPLPQRKK-QPTVTLLPAADMDDFSRQLQNSMSGASADSTQ 419 Query 419 A 419 A Sbjct 420 A 420 >sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76583 GN=N PE=2 SV=1 Length=457 Score = 403 bits (1035), Expect = 5e-137, Method: Composition-based stats. Identities = 136/405 (34%), Positives = 200/405 (49%), Gaps = 42/405 (10%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73 +D T N + G R++ ++ N SWF+ +TQ K ++ KF GQGVP Sbjct 31 ADQTERGSNNQNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFKFAEGQGVP 90 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G+ W Sbjct 91 IANGIPATEQKGYWFRHNRRSFKSPDGQQKQLLPRWYFYYLGTGPYAGAEYGDDVEGVCW 150 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA + A I R+P+++ AI + GT LP+G+Y EGS + AS S Sbjct 151 VANKQADTRTSADIAERDPSSHEAIPTRFAPGTFLPQGYYVEGSGRSAPASRSGSRSQSR 210 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N SS PA + +A L+L +L + Q + VTK+SA Sbjct 211 GPNNRARSSSNQRQPASIVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFPILAELA 318 Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+A AFF S++ + E T L Y+GA++ D P F+ + +L ++++A Sbjct 319 PTAGAFFFGSKLELVKKNSVGVDEPTKDVYELQYSGAVRFDSTLPGFETIMKVLRENLNA 378 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 Y+ ++ AD PQR++ Q+ V ++D+ S Sbjct 379 YQ---------NQDGGADVVSPKPQRKRGQRQVAQKKNDEVDNVS 414 >sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain 1) OX=11139 GN=N PE=3 SV=1 Length=455 Score = 401 bits (1030), Expect = 2e-136, Method: Composition-based stats. Identities = 139/405 (34%), Positives = 202/405 (50%), Gaps = 44/405 (11%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73 +D T N + G R++ ++ N SWF+ +TQ K ++ +F +GQGVP Sbjct 31 ADQTERGPNNQNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAQGQGVP 90 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + DG++W Sbjct 91 IANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGAEYGDDIDGVVW 150 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA++ A I R+P+++ AI + GT LP+GFY EGS + AS S Sbjct 151 VASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N SS PA +A L+L +L + Q + VTK+SA Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318 Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+ SAFF S++ + + T L Y+GAI+ D P F+ + +LN+++DA Sbjct 319 PTPSAFFFGSKLELVKKNSGGADDPTKDVYELQYSGAIRFDSTLPGFETIMKVLNENLDA 378 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 Y+ D+ AD PQR++ + L ++D+ S Sbjct 379 YQ---------DQAGGADVVSPKPQRKRGTKQKALK--GEVDNVS 412 >sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain A59) OX=11142 GN=N PE=1 SV=2 Length=454 Score = 398 bits (1022), Expect = 4e-135, Method: Composition-based stats. Identities = 133/409 (33%), Positives = 199/409 (49%), Gaps = 34/409 (8%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73 +D T N + G R++ ++ N SWF+ +TQ K ++ +F GQGVP Sbjct 31 ADQTERGPNNQNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAEGQGVP 90 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G+ W Sbjct 91 IANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSIEGVFW 150 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA A + I R+P+++ AI + GT LP+GFY EGS + AS S Sbjct 151 VANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N SS PA +A L+L +L + Q + VTK+SA Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318 Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+ AFF S++ + E T L Y+GA++ D P F+ + +LN++++A Sbjct 319 PTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLD-DFSKQL 407 Y+ + K ++ QA ++ + P + + + S++L Sbjct 379 YQKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPKSSVQRNVSREL 427 >sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain 3) OX=11140 GN=N PE=1 SV=1 Length=454 Score = 397 bits (1019), Expect = 1e-134, Method: Composition-based stats. Identities = 133/409 (33%), Positives = 199/409 (49%), Gaps = 34/409 (8%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73 +D T N + G R++ ++ N SWF+ +TQ K ++ +F GQGVP Sbjct 31 ADQTERGPNNQNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAEGQGVP 90 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G+ W Sbjct 91 IANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSIEGVFW 150 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA A + I R+P+++ AI + GT LP+GFY EGS + AS S Sbjct 151 VANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N SS PA +A L+L +L + Q + VTK+SA Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318 Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+ AFF S++ + E T L Y+GA++ D P F+ + +LN++++A Sbjct 319 PTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLD-DFSKQL 407 Y+ + K ++ QA ++ + P + + + S++L Sbjct 379 YQKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPKSSVQRNVSREL 427 >sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain 681) OX=33740 GN=N PE=3 SV=1 Length=454 Score = 396 bits (1018), Expect = 2e-134, Method: Composition-based stats. Identities = 136/406 (33%), Positives = 196/406 (48%), Gaps = 42/406 (10%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT------ASWFTALTQHGK-EDLKFPRGQGVP 73 +D T QN G R++ ++ NT SWF+ +TQ K ++ +F GQGVP Sbjct 31 ADQTERGQNNGNRGRRNQPKQTATTQPNTGSVVPHYSWFSGITQFQKGKEFQFAGGQGVP 90 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I P +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG +G + +G+ W Sbjct 91 IANGIPPSEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASFGDSIEGVFW 150 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA A I R+P+++ AI + GT LP+GFY EGS + AS S Sbjct 151 VANSQADTNTSADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N SS PA +A L+L +L + Q + VTK+SA Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFPILAELA 318 Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+ AFF S++ + E T L Y+GA++ D P F+ + +LN++++A Sbjct 319 PTPGAFFFGSKLELVKKNSGGVDEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSK 405 Y+ ++ AD PQR++ + D +K Sbjct 379 YQ---------NQAGGADVVSPKPQRKRGTKQTAQKEELDSISVAK 415 >sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain DVIM) OX=231423 GN=N PE=3 SV=1 Length=455 Score = 396 bits (1016), Expect = 3e-134, Method: Composition-based stats. Identities = 136/405 (34%), Positives = 199/405 (49%), Gaps = 44/405 (11%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73 +D T N + G R++ ++ +N SWF+ +TQ K ++ +F GQGVP Sbjct 31 ADQTERGPNNQNRGRRNQPKQTATTQSNSGSVVPHYSWFSGITQFQKGKEFQFADGQGVP 90 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G+ W Sbjct 91 IANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGATYGDSIEGVFW 150 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA A + I R+P+++ AI + GT LP+GFY EGS + AS S Sbjct 151 VANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 S N SS PA +A L+L +L + Q + VTK+SA Sbjct 211 GSNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318 Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+ AFF S++ + E T L Y+GAI+ D P F+ + +LN++++A Sbjct 319 PTPGAFFFGSKLELVKKNSGGVDEPTKDVYELLYSGAIRFDSTLPGFETIMKVLNENLNA 378 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 Y+ ++ D PQR+ ++Q ++D+ S Sbjct 379 YQ---------NQAGGVDVVSPKPQRKGRRQ--AQEKKDEVDNVS 412 >sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain S) OX=11145 GN=N PE=3 SV=1 Length=454 Score = 395 bits (1015), Expect = 5e-134, Method: Composition-based stats. Identities = 134/409 (33%), Positives = 202/409 (49%), Gaps = 34/409 (8%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73 +D T N G R++ ++ N SWF+ +TQ K ++ +F +GQGVP Sbjct 31 ADQTERAGNNGNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFVQGQGVP 90 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G++W Sbjct 91 IANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGAEYGDDIEGVVW 150 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA++ A I R+P+++ AI + GT LP+GFY EGS + AS S Sbjct 151 VASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N SS PA +A L+L +L + Q + VTK+SA Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318 Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+A AFF S++ + E T L Y+GA++ D P F+ + +LN++++A Sbjct 319 PTAGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLD-DFSKQL 407 Y+ + K ++ QA ++ + P + + + S++L Sbjct 379 YQKDGGADVVSPKPQRKGRRQAQEKKDEVDNVSVAKPKSSVQRNVSREL 427 >sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain JHM) OX=11144 GN=N PE=1 SV=1 Length=455 Score = 393 bits (1009), Expect = 3e-133, Method: Composition-based stats. Identities = 133/405 (33%), Positives = 199/405 (49%), Gaps = 44/405 (11%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73 +D T N + G +++ ++ N SWF+ +TQ K ++ +F +GQGVP Sbjct 31 ADQTERGLNNQNRGRKNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAQGQGVP 90 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G++W Sbjct 91 IANGIPASQQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPYAGAEYGDDIEGVVW 150 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA++ A I R+P+++ AI + GT LP+GFY EGS + AS S Sbjct 151 VASQQAETRTSADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRPQSR 210 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N SS PA +A L+L +L + Q + VTK+SA Sbjct 211 GPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFPILAELA 318 Query 309 PSASAFFGMSRIGME---------VTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+A AFF S++ + T L Y+GA++ D P F+ + +LN++++A Sbjct 319 PTAGAFFFGSKLELVKKNSGGADGPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNA 378 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 Y+ ++ AD PQR++ + ++D+ S Sbjct 379 YQ---------NQDGGADVVSPKPQRKRGTKQKAQK--DEVDNVS 412 >sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=N PE=1 SV=1 Length=441 Score = 391 bits (1004), Expect = 1e-132, Method: Composition-based stats. Identities = 133/420 (32%), Positives = 209/420 (50%), Gaps = 44/420 (10%) Query 21 SDSTGSNQNGERSGARSKQR-----RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPI 74 +D + N G +++ + +PQG SWF+ +TQ K D KF GQGVPI Sbjct 28 ADQSERNYQTFNRGRKTQPKFTVSTQPQGNTIPHYSWFSGITQFQKGRDFKFSDGQGVPI 87 Query 75 NTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWV 133 P + GY+ R +RR + DG+ K L PRWYFYYLGTGP A YG + +G+ WV Sbjct 88 AFGVPPSEAKGYWYRHSRRSFKTADGQQKQLLPRWYFYYLGTGPYANASYGESLEGVFWV 147 Query 134 ATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNS 193 A A + + +R+P AI + P GT LP+G+Y EGS G S ++SR SRS++ Sbjct 148 ANHQADTSTPSDVSSRDPTTQEAIPTRFPPGTILPQGYYVEGS-GRSASNSRPGSRSQSR 206 Query 194 SRNS---TPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKS 250 N+ + +S + +A L+L +L G+ + Q VTK++ Sbjct 207 GPNNRSLSRSNSNFRHSDSIVKPDMADEIANLVLAKL----------GKDSKPQQVTKQN 256 Query 251 AAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQ 306 A E KPRQKRT K NV Q FG+RGP Q NFG+ E+++ GT+ +P +A+ Sbjct 257 AKEIRHKILTKPRQKRTPNKHCNVQQCFGKRGPSQ---NFGNAEMLKLGTNDPQFPILAE 313 Query 307 FAPSASAFFGMSRIGM--------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHID 358 AP+ AFF S++ + L Y+G+I+ D P F+ + +L ++++ Sbjct 314 LAPTPGAFFFGSKLDLVKRDSEADSPVKDVFELHYSGSIRFDSTLPGFETIMKVLEENLN 373 Query 359 AYKTFPPTEPKKDKKKKADETQALPQRQKK-QQTVTLLPAADLDDFSKQLQQSMSSADST 417 AY ++ +D + PQR++ +Q + +L ++ + + D + Sbjct 374 AY-------VNSNQNTDSDSLSSKPQRKRGVKQLPEQFDSLNLSAGTQHISNDFTPEDHS 426 >sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis virus (strain Arkansas 99) OX=231471 GN=N PE=3 SV=1 Length=409 Score = 389 bits (999), Expect = 2e-132, Method: Composition-based stats. Identities = 106/395 (27%), Positives = 163/395 (41%), Gaps = 44/395 (11%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP + P+ + ASWF A+ + KF G Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNSHPPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N Q GY+RR R + G K + WYFYY GTGP A L +G ++DG Sbjct 54 SGVPDNENLKTSQQHGYWRRQAR-FKPVKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WVA +GA + H GTR+P L+ S GG + R Sbjct 113 IVWVAAKGADVKSRSHQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R G D L +K+ + QQ++G +TK Sbjct 159 PLNRGRSGRSTAASSAASSRAPSRDGSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKV 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S+ A SR+ ++ P G L + + DP F + V + ++ +D T P + Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 370 KDKKKKADE-----TQALPQRQKKQQTVTLLPAAD 399 + K + + + P++Q+ ++ D Sbjct 337 RPKSRSSSRPATRTSSPAPRQQRPKKEKKPKKQDD 371 >sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain 2) OX=76344 GN=N PE=2 SV=1 Length=451 Score = 390 bits (1001), Expect = 5e-132, Method: Composition-based stats. Identities = 132/410 (32%), Positives = 200/410 (49%), Gaps = 39/410 (10%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73 +D T G R+ ++ N SWF+ +TQ K ++ +F +GQGVP Sbjct 31 ADQTER----GNRGRRNHPKQTATTQPNAGSVVPHYSWFSGITQFQKGKEFQFAQGQGVP 86 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I + +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G++W Sbjct 87 IASGIPASEQKGYWYRHNRRSFKTPDGQHKQLLPRWYFYYLGTGPHAGAEYGDDIEGVVW 146 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA++ A + R+P+++ AI + GT LP+GFY EGS + AS S Sbjct 147 VASQQADTKTTADVVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 206 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N SS PA +A L+L +L + Q + VTK+SA Sbjct 207 GPNNRARSSSNQRQPASAVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 257 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 258 EVRQKILTKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 314 Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+ SAFF S++ + E T L Y+GAI+ D P F+ + +L ++++A Sbjct 315 PTPSAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAIRFDSTLPGFETIMKVLTENLNA 374 Query 360 YKTFPPT-EPKKDKKKKADETQALPQRQKKQQTVTLLPAADLD-DFSKQL 407 Y+ + + K + QA ++ + P + + + S++L Sbjct 375 YQDQAGSVDLVSPKPPRRGRRQAQEKKDEVDNVSVAKPKSLVQRNVSREL 424 >sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain NJ) OX=231433 GN=N PE=3 SV=1 Length=454 Score = 390 bits (1001), Expect = 6e-132, Method: Composition-based stats. Identities = 135/405 (33%), Positives = 195/405 (48%), Gaps = 44/405 (11%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNN------TASWFTALTQHGK-EDLKFPRGQGVP 73 +D T N G R++ ++ N SWF+ +TQ K ++ +F GQGVP Sbjct 31 ADQTERAGNNGNRGRRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFADGQGVP 90 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I +Q GY+ R RR + DG+ K L PRWYFYYLGTGP AG YG + +G+ W Sbjct 91 IANGIPATEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGAIYGDSIEGVFW 150 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA A + I R+P+++ AI + GT LP+GFY EGS + AS S Sbjct 151 VANSQADTNTRADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSR 210 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N SS PA +A L+L +L + Q + VTK+SA Sbjct 211 GPSNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVTKQSAK 261 Query 253 EASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFA 308 E + KPRQKRT K V Q FG+RGP Q NFG E+++ GT +P +A+ A Sbjct 262 EVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPILAELA 318 Query 309 PSASAFFGMSRIGM---------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 P+ AFF S++ + E T L Y+GAI+ D P F+ + +LN++++A Sbjct 319 PTPGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAIRFDSTLPGFETIMKVLNENLNA 378 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 Y+ + D PQR+ ++Q ++D+ S Sbjct 379 YQ---------KEAGGVDVVSPKPQRKGRRQ--AQEKKDEVDNVS 412 >sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis virus (strain SAIB20) OX=231426 GN=N PE=2 SV=1 Length=409 Score = 387 bits (994), Expect = 1e-131, Method: Composition-based stats. Identities = 104/376 (28%), Positives = 160/376 (43%), Gaps = 23/376 (6%) Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94 R P+ + ASWF A+ + KF G GVP N N Q GY+RR R Sbjct 20 GGPRPPKVGSSGNASWFQAIKAKKLNSPQPKF-EGSGVPDNENLKTSQQHGYWRRQAR-F 77 Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154 + G G K + WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKF 137 Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214 L+ S GG + R N R+ ++ + +R Sbjct 138 DQYPLRF--------------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRPPSRE 183 Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274 G D L +K+ + QQ++G +TK A E + + KRT Y V Q F Sbjct 184 GSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242 Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334 G R + +GNFGD ++ +G + PS+ A SR+ ++ P G L + Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301 Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE---TQALPQRQKKQQT 391 + DP F + V + ++ +D T P + K K + + + P ++++ Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPKPKSRSSSRPATRTSSPAPRQQRLK 361 Query 392 VTLLPAADLDDFSKQL 407 P D+ K L Sbjct 362 KEKRPKKQDDEVDKAL 377 >sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=N PE=3 SV=1 Length=441 Score = 388 bits (996), Expect = 2e-131, Method: Composition-based stats. Identities = 133/419 (32%), Positives = 206/419 (49%), Gaps = 44/419 (11%) Query 22 DSTGSNQNGERSGARSKQR-----RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPIN 75 D + + G + + + +PQG P SWF+ +TQ K D KFP GQGVPI Sbjct 29 DQSERSHQTYNRGRKPQPKFTVSTQPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIA 88 Query 76 TNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVA 134 P + GY+ + RR + DG+ K L PRWYFYYLGTGP A YG +GI WVA Sbjct 89 YGIPPSEAKGYWYKHNRRSFKTADGQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVA 148 Query 135 TEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSS 194 + A + + R+P AI + GT LP+G+Y EGS G S ++SR SRS++ Sbjct 149 SHQADTSIPSDVSARDPTIQEAIPTRFSPGTILPQGYYVEGS-GRSASNSRPGSRSQSRG 207 Query 195 RNS---TPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSA 251 N+ + +S + +A L+L +L G+ + Q VTK++A Sbjct 208 PNNRSLSRSNSNFRHSDSIVKPDMADEIASLVLAKL----------GKDSKPQQVTKQNA 257 Query 252 AEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQF 307 E KPRQKRT K NV Q FG+RGP Q NFG+ E+++ GT+ +P +A+ Sbjct 258 KEIRHKILMKPRQKRTPNKFCNVQQCFGKRGPLQ---NFGNSEMLKLGTNDPQFPILAEL 314 Query 308 APSASAFFGMSRIGM--------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 AP+ AFF S++ + + L Y+G+I+ D P F+ + +L +++DA Sbjct 315 APTPGAFFFGSKLELFKRDSDADSPSKDTFELRYSGSIRFDSTLPGFETIMKVLKENLDA 374 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKK-QQTVTLLPAADLDDFSKQLQQSMSSADST 417 Y ++ + PQR++ +Q+ + +L ++ + + D + Sbjct 375 Y-------VNSNQNTVSGSLSPKPQRKRGVKQSPESFDSLNLSADTQHISNDFTPEDHS 426 >sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=N PE=3 SV=1 Length=441 Score = 388 bits (996), Expect = 2e-131, Method: Composition-based stats. Identities = 133/419 (32%), Positives = 206/419 (49%), Gaps = 44/419 (11%) Query 22 DSTGSNQNGERSGARSKQR-----RPQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPIN 75 D + + G + + + +PQG P SWF+ +TQ K D KFP GQGVPI Sbjct 29 DQSERSHQTYNRGRKPQPKFTVSTQPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIA 88 Query 76 TNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVA 134 P + GY+ + RR + DG+ K L PRWYFYYLGTGP A YG +GI WVA Sbjct 89 YGIPPSEAKGYWYKHNRRSFKTADGQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVA 148 Query 135 TEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSS 194 + A + + R+P AI + GT LP+G+Y EGS G S ++SR SRS++ Sbjct 149 SHQADTSIPSDVSARDPTIQEAIPTRFSPGTILPQGYYVEGS-GRSASNSRPGSRSQSRG 207 Query 195 RNS---TPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSA 251 N+ + +S + +A L+L +L G+ + Q VTK++A Sbjct 208 PNNRSLSRSNSNFRHSDSIVKPDMADEIASLVLAKL----------GKDSKPQQVTKQNA 257 Query 252 AEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQF 307 E KPRQKRT K NV Q FG+RGP Q NFG+ E+++ GT+ +P +A+ Sbjct 258 KEIRHKILMKPRQKRTPNKFCNVQQCFGKRGPLQ---NFGNSEMLKLGTNDPQFPILAEL 314 Query 308 APSASAFFGMSRIGM--------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359 AP+ AFF S++ + + L Y+G+I+ D P F+ + +L +++DA Sbjct 315 APTPGAFFFGSKLELFKRDSDADSPSKDTFELRYSGSIRFDSTLPGFETIMKVLKENLDA 374 Query 360 YKTFPPTEPKKDKKKKADETQALPQRQKK-QQTVTLLPAADLDDFSKQLQQSMSSADST 417 Y ++ + PQR++ +Q+ + +L ++ + + D + Sbjct 375 Y-------VNSNQNTVSGSLSPKPQRKRGVKQSPESFDSLNLSADTQHISNDFTPEDHS 426 >sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain Minnesota) OX=231430 GN=N PE=3 SV=1 Length=409 Score = 386 bits (992), Expect = 3e-131, Method: Composition-based stats. Identities = 102/370 (28%), Positives = 157/370 (42%), Gaps = 25/370 (7%) Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94 + P+ + ASWF A+ + KF G GVP N N P Q GY+RR R Sbjct 20 GGPKPPKVGSSGNASWFQAIKAKKLNSPPPKF-EGSGVPDNENLKPGQQHGYWRRQAR-F 77 Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154 + G K + WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P Sbjct 78 KPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKF 137 Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214 L+ S GG + R N R+ ++ + R Sbjct 138 DQYPLRF--------------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASTRAPSRE 183 Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274 G D L +K+ + QQ++G +TK A E + + KRT Y V Q F Sbjct 184 GSRGRRSGSEDDLIARAAKII-QDQQRKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242 Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334 G R + +GNFGD ++ +G + PS+ A SR+ ++ P G L + Sbjct 243 GPRT-KGKEGNFGDDKMNEEGITDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301 Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE-----TQALPQRQKKQ 389 + DP F + V + ++ ID T P + K K + + + P++Q+ + Sbjct 302 FTTVVPRDDPQFDNYVKICDQCIDGVGTRPKDDEPKPKSRSSSRPATRTSSPAPRQQRSK 361 Query 390 QTVTLLPAAD 399 + D Sbjct 362 KEKKPKKQDD 371 >sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis virus (strain Gray) OX=31624 GN=N PE=1 SV=2 Length=409 Score = 386 bits (990), Expect = 5e-131, Method: Composition-based stats. Identities = 104/376 (28%), Positives = 161/376 (43%), Gaps = 23/376 (6%) Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94 R P+ + ASWF A+ + KF G GVP N N Q GY+RR R Sbjct 20 GGPRPPKVGSSGNASWFQAIKAKKLNSPQPKF-EGSGVPDNENFKTSQQHGYWRRQAR-F 77 Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154 + G G+ K + WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+P Sbjct 78 KPGKGRRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKF 137 Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214 L+ S GG + R N R+ ++ + +R Sbjct 138 DQYPLRF--------------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRPPSRE 183 Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274 G D L +K+ + QQ++G +TK A E + + KRT Y V Q F Sbjct 184 GSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242 Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334 G R + +GNFGD ++ +G + PS+ A SR+ ++ P G L + Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301 Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE---TQALPQRQKKQQT 391 + DP F + V + ++ +D T P + K K + + + P ++++ Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPKPKSRSSSRPATRTSSPAPRQQRLK 361 Query 392 VTLLPAADLDDFSKQL 407 P D+ K L Sbjct 362 KEKRPKKQDDEVDKAL 377 >sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis virus (strain Beaudette US) OX=160750 GN=N PE=1 SV=1 Length=409 Score = 385 bits (989), Expect = 8e-131, Method: Composition-based stats. Identities = 106/383 (28%), Positives = 159/383 (42%), Gaps = 44/383 (11%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP + P+ + ASWF A+ + KF G Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNTPPPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N P Q GY+RR R + G G K + WYFYY GTGP A L +G +DG Sbjct 54 SGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WVA +GA + + GTR+P L+ S GG + R Sbjct 113 IVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R G D L +K+ + QQ++G +TK Sbjct 159 PLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDLIARAAKII-QDQQKKGSRITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S+ A SR+ ++ G L + + DP F + V + ++ +D T P + Sbjct 277 SSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 370 KDKKKKADE-----TQALPQRQK 387 K K + + P++Q+ Sbjct 337 KPKSRSSSRPATRGNSPAPRQQR 359 >sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=N PE=1 SV=1 Length=409 Score = 385 bits (989), Expect = 8e-131, Method: Composition-based stats. Identities = 106/383 (28%), Positives = 159/383 (42%), Gaps = 44/383 (11%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP + P+ + ASWF A+ + KF G Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNTPPPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N P Q GY+RR R + G G K + WYFYY GTGP A L +G +DG Sbjct 54 SGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WVA +GA + + GTR+P L+ S GG + R Sbjct 113 IVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R G D L +K+ + QQ++G +TK Sbjct 159 PLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDLIARAAKII-QDQQKKGSRITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S+ A SR+ ++ G L + + DP F + V + ++ +D T P + Sbjct 277 SSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 370 KDKKKKADE-----TQALPQRQK 387 K K + + P++Q+ Sbjct 337 KPKSRSSSRPATRGNSPAPRQQR 359 >sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=N PE=1 SV=1 Length=409 Score = 385 bits (989), Expect = 8e-131, Method: Composition-based stats. Identities = 106/383 (28%), Positives = 159/383 (42%), Gaps = 44/383 (11%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP + P+ + ASWF A+ + KF G Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNTPPPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N P Q GY+RR R + G G K + WYFYY GTGP A L +G +DG Sbjct 54 SGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WVA +GA + + GTR+P L+ S GG + R Sbjct 113 IVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R G D L +K+ + QQ++G +TK Sbjct 159 PLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDLIARAAKII-QDQQKKGSRITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S+ A SR+ ++ G L + + DP F + V + ++ +D T P + Sbjct 277 SSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 370 KDKKKKADE-----TQALPQRQK 387 K K + + P++Q+ Sbjct 337 KPKSRSSSRPATRGNSPAPRQQR 359 >sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis virus (strain KB8523) OX=11126 GN=N PE=3 SV=1 Length=409 Score = 385 bits (988), Expect = 1e-130, Method: Composition-based stats. Identities = 106/395 (27%), Positives = 163/395 (41%), Gaps = 44/395 (11%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP + P+ + ASWF A+ + LKF G Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNSPPLKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N Q GY+RR R + G K + WYFYY GTGP A L +G ++DG Sbjct 54 SGVPDNENLKTSQQHGYWRRQAR-FKPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WVA +GA + + GTR+P L+ S GG + R Sbjct 113 IVWVAAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R G D L +K+ + QQ++G +TK Sbjct 159 PLNRGRSGKSTAASSAASSRAPSREGSRGRRSGAEDDLIARAAKII-QDQQKKGARITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S+ A SR+ ++ P G L + + DP F + V + ++ +D T P + Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKFEFTTVVSRNDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 370 KDKKKKADE-----TQALPQRQKKQQTVTLLPAAD 399 K K + + + P++ + ++ D Sbjct 337 KPKSRSSSRPATRTSSPAPRQPRPKKEKKTKKQDD 371 >sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis virus (strain D1466) OX=231472 GN=N PE=3 SV=1 Length=409 Score = 383 bits (983), Expect = 8e-130, Method: Composition-based stats. Identities = 103/377 (27%), Positives = 154/377 (41%), Gaps = 39/377 (10%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP + P+ + ASWF AL + KF G Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQALKAKKLNSPPPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N Q GY+RR R + G G K + WYFYY GTGP A L +G ++DG Sbjct 54 SGVPDNENLKLSQQHGYWRRQAR-YKPGKGGRKSVPDAWYFYYTGTGPAADLNWGYSQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WV+ +GA + + GTR+P L+ S GG + R Sbjct 113 IVWVSAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R G D L +K+ + QQ++G +TK Sbjct 159 PINRGRSGRSTAASSAASSRAPSRDGSRGRRSGAEDDLIARAAKII-QDQQKKGSRITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KCKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S+ A SR+ ++ P G L + + DP F + V + ++ +D T P + Sbjct 277 SSHACLFGSRVTPKLQPDGLHLRFEFTTVVSRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 370 KDKKKKADETQALPQRQ 386 + K + Sbjct 337 RPKSRPNSRPATRTSSP 353 >sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain NC95) OX=231431 GN=N PE=3 SV=1 Length=409 Score = 382 bits (981), Expect = 1e-129, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 156/370 (42%), Gaps = 25/370 (7%) Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94 + P+ + ASWF ++ + KF G GVP N N Q GY+RR R Sbjct 20 GGPKPPKVGSSGNASWFQSIKAKKLNSPQPKF-EGSGVPDNENIKTSQQHGYWRRQAR-F 77 Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154 + G G K + WYFYY GTGP A L +G +DGI+WVA +GA + + GTR+P Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADVKSRSNQGTRDPDKF 137 Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214 L+ S GG ++ R + R+ ++ + +R Sbjct 138 DQYPLRF--------------SDGGPDSNFRWDFIPLHRGRSGRSTAASSAASSRAPSRD 183 Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274 G D L +K+ + QQ++G +TK A E + + KRT Y V Q F Sbjct 184 GSRGRRSGSEDDLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTVPPGYKVDQVF 242 Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334 G R + +GNFGD ++ +G + PS+ A SR+ ++ P G L + Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFE 301 Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE-----TQALPQRQKKQ 389 + DP F + V + ++ +D T P + K + + P++Q+ + Sbjct 302 FTTVVPRDDPQFDNYVTICDQCVDGIGTRPKDNEPRPKSRPSSRPATRGNSPAPRQQRPK 361 Query 390 QTVTLLPAAD 399 + D Sbjct 362 KEKKPKKQDD 371 >sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis virus (strain DE072) OX=233265 GN=N PE=3 SV=1 Length=409 Score = 382 bits (981), Expect = 2e-129, Method: Composition-based stats. Identities = 101/377 (27%), Positives = 152/377 (40%), Gaps = 39/377 (10%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP + P+ + ASWF A+ + KF G Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKAKKLNSPQPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N Q GY+RR R + G K + WYFYY GTGP A L +G ++DG Sbjct 54 SGVPDNENLKTSQQHGYWRRQLR-FKPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WVA +GA + + GTR+P L+ S GG + R Sbjct 113 IVWVAAKGADVKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R G L +K+ + QQ++G +TK Sbjct 159 PLNRGRSGRSTAASSAASSRAPSRDGSRGRRSGSEGDLIARAAKII-QDQQKRGSRITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S+ A SR+ ++ P G L + DP F + V + ++ +D T P + Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKIEFTTVVSRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 370 KDKKKKADETQALPQRQ 386 + K + + Sbjct 337 RPKSRSSSRPATRTSSP 353 >sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=N PE=3 SV=1 Length=409 Score = 381 bits (978), Expect = 4e-129, Method: Composition-based stats. Identities = 102/395 (26%), Positives = 160/395 (41%), Gaps = 44/395 (11%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP + P+ + ASWF A+ + KF G Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQAIKANKLNIPPPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N Q GY+RR + G G K + WYFYY GTGP A L +G ++DG Sbjct 54 SGVPDNENLKSSQQHGYWRRQA-TFKPGKGGRKPVPDAWYFYYTGTGPAANLNWGDSQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WVA +GA + + GTR+ L+ S GG + R Sbjct 113 IVWVAGKGADTKFRSNQGTRDSDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R D L +++ + QQ++G +TK Sbjct 159 PLNGGRSGRSTAASSAASSRAPSREVSRGRRSGSEDDLIARAARII-QDQQKKGSRITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPNYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S+ A SR+ ++ P G L + + DP F + V + ++ +D T P + Sbjct 277 SSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 370 KDKKKKADE-----TQALPQRQKKQQTVTLLPAAD 399 + K + + P++Q+ ++ D Sbjct 337 RPKSRSSSRPATRGNSPAPRQQRPKKEKKPKKHDD 371 >sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis virus (strain H120) OX=231424 GN=N PE=3 SV=1 Length=409 Score = 381 bits (978), Expect = 4e-129, Method: Composition-based stats. Identities = 103/377 (27%), Positives = 154/377 (41%), Gaps = 39/377 (10%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP + P+ + ASWF AL + KF G Sbjct 14 APVIKLGGP-------------------KPPKVGSSGNASWFQALKAKKLNSPPPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N Q GY+RR R + G G K + WYFYY GTGP A L +G ++DG Sbjct 54 SGVPDNENLKLSQQHGYWRRQAR-YKPGKGGKKSVPDAWYFYYTGTGPAADLNWGDSQDG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WV+ +GA + + GTR+P L+ S GG + R Sbjct 113 IVWVSAKGADTKSRSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ ++ + +R G D L +K+ + QQ++G +TK Sbjct 159 PINRGRSGRSTAASSAASSRAPSRDGSRGRRSGAEDDLIARAAKII-QDQQKKGSRITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVIAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S+ A SR+ ++ P G L + + DP F + V + ++ +D T P + Sbjct 277 SSHACLFGSRVTPKLQPDGLHLRFEFTTVVSRDDPQFDNYVKICDQCVDGVGTRPKDDEP 336 Query 370 KDKKKKADETQALPQRQ 386 + K + Sbjct 337 RPKSRPNSRPATRTSSP 353 >sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis virus (strain H52) OX=231425 GN=N PE=2 SV=1 Length=409 Score = 381 bits (977), Expect = 5e-129, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 154/370 (42%), Gaps = 25/370 (7%) Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94 + P+ + SWF A+ + KF G GVP N N P Q GY+RR R Sbjct 20 GGPKPPKVGSSGNVSWFQAIKAKKLNSPPPKF-EGSGVPDNENLKPSQQHGYWRRQAR-F 77 Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154 + G G K + WYFYY GTGP A L +G ++DGI+WVA +GA + + GTR+ Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAANLNWGDSQDGIVWVAGKGADTKFRSNQGTRDSDKF 137 Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214 L+ S GG + R N R+ ++ + +R Sbjct 138 DQYPLRF--------------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSRE 183 Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274 D L +++ + QQ++G +TK A E + + KRT Y V Q F Sbjct 184 VSRGRRSGSEDDLIARAARII-QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYKVDQVF 242 Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334 G R + +GNFGD ++ +G + PS+ A SR+ + P G L + Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPRLQPDGLHLKFE 301 Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE-----TQALPQRQKKQ 389 + DP F + V + ++ +D T P + + K + + P++Q+ + Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPRPKSRSSSRPATRGNSPAPRQQRPK 361 Query 390 QTVTLLPAAD 399 + D Sbjct 362 KEKKPKKQDD 371 >sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis virus (strain Vic S) OX=231428 GN=N PE=2 SV=1 Length=409 Score = 379 bits (972), Expect = 4e-128, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 156/370 (42%), Gaps = 25/370 (7%) Query 37 SKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRI 94 + P+ + ASWF A+ + KF G GVP N N P Q GY+RR R Sbjct 20 GGPKPPKIGSSGNASWFQAIKAKKLNVPQPKF-EGSGVPDNNNIKPSQQHGYWRRQAR-Y 77 Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154 + G K + WYFYY GTGP A L +G N+DGI+WVA +GA + + GTR+P Sbjct 78 KPGKSGRKPVPDAWYFYYTGTGPAADLNWGENQDGIVWVAAKGADTKSRSNQGTRDPDKF 137 Query 155 AAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNG 214 L+ S GG + R N R+ ++ + +R Sbjct 138 DQYPLRF--------------SDGGPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSRE 183 Query 215 GDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAF 274 G D L +K+ + QQ++G +TK A E + + KRT Y V Q F Sbjct 184 GSRGRRSGAEDDLIARAAKII-QDQQKRGSRITKAKADEMAHRRYCKRTIPPGYRVDQVF 242 Query 275 GRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYT 334 G R + +GNFGD ++ +G PS+ A SR+ ++ P G L + Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTATLNLIPSSHACLFGSRVTPKLQPDGLHLKFE 301 Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADE-----TQALPQRQKKQ 389 + DP F + V + ++ +D T P + + K + + P++Q+ + Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPRPKSRSSSRPATRGNSPAPRQQRPK 361 Query 390 QTVTLLPAAD 399 + D Sbjct 362 KEKKPKKQDD 371 >sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain Indiana) OX=231429 GN=N PE=3 SV=1 Length=409 Score = 377 bits (967), Expect = 2e-127, Method: Composition-based stats. Identities = 103/395 (26%), Positives = 160/395 (41%), Gaps = 44/395 (11%) Query 12 APRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT--QHGKEDLKFPRG 69 AP I GGP + P+ + + SWF A+ + KF G Sbjct 14 APVIKLGGP-------------------KPPKVGSSGSVSWFQAIKAKKLNSPQPKF-EG 53 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 GVP N N Q GY+RR R + G K + WYFYY GTGP A L +G ++ G Sbjct 54 SGVPDNENLKTSQQHGYWRRQAR-FKSSRGGRKPVPDAWYFYYTGTGPAADLQWGDSQAG 112 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WVA +GA K + GTR+P L+ S GG + R Sbjct 113 IVWVAAKGADVKSKSNQGTRDPDKFDQYPLRF--------------SDGGPDGNFRWDFI 158 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 N R+ + + +R G D L +K+ + QQ++G +TK Sbjct 159 PLNRGRSGRSTAVSSAASSRAPSREGSRGRRSGAEDDLIARAAKII-QDQQKKGSRITKA 217 Query 250 SAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAP 309 A E + + KRT Y V Q FG R + +GNFGD ++ +G + P Sbjct 218 KAEEMAHRRYCKRTVPPGYKVEQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVP 276 Query 310 SASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPK 369 S+ A S++ ++ P G L + + DP F + V + ++ +D T P + Sbjct 277 SSHACLFASKLTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVSICDQCVDGVGTRPKDDEP 336 Query 370 KDKKKKADE-----TQALPQRQKKQQTVTLLPAAD 399 + K + + P++Q+ ++ D Sbjct 337 RPKSRASSRPATRGNSPAPRQQRLKKEKKPKKQDD 371 >sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate NC99) OX=202496 GN=N PE=3 SV=1 Length=446 Score = 369 bits (946), Expect = 9e-124, Method: Composition-based stats. Identities = 130/417 (31%), Positives = 201/417 (48%), Gaps = 47/417 (11%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPN------NTASWFTALTQHGK-EDLKFPRGQGVP 73 +D + + N + G R++ ++ SWF+ +TQ K ++ +F GQGVP Sbjct 27 ADQSDQSSNFQTRGRRAQPKQTATSQPAGGNVVPYYSWFSGITQFQKGKEFQFAEGQGVP 86 Query 74 INTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 I + GY+ R RR + DG + L PRWYFYYLGTGP A YG N DG+ W Sbjct 87 IAPGIPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKAQYGTNIDGVFW 146 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGG--SQASSRSSSRS 190 VA + A + R+P+++ AI + P GT LP+G+Y EGS + S+ +S Sbjct 147 VANKQADVNTPADVVDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSVPNSRSTSRASSR 206 Query 191 RNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKS 250 +S+ + +S +P + +A L+L +L + +K Q VTK++ Sbjct 207 ASSAGSRNRSNSGTRTPTSGVTSDMADQIASLVLAKLGKDATK---------PQQVTKQT 257 Query 251 AAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQ 306 A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A+ Sbjct 258 AKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGAEMLKLGTSDPQFPILAE 314 Query 307 FAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNK 355 AP+A AFF SR+ + E L Y GAI+ D P F+ + +LN+ Sbjct 315 LAPTAGAFFFGSRLELAKVQNLSGNFDEPQKDVYELRYNGAIRFDSTLPGFETIMKVLNE 374 Query 356 HIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS 412 +++AY+ ++ PQRQ+ QQ + ++QQ+ S Sbjct 375 NLNAYQ----------QQDDGTNMSPKPQRQRGQQKGGENEDVSVAAPKSRVQQNKS 421 >sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain Quebec) OX=11133 GN=N PE=3 SV=1 Length=448 Score = 363 bits (931), Expect = 2e-121, Method: Composition-based stats. Identities = 132/442 (30%), Positives = 211/442 (48%), Gaps = 65/442 (15%) Query 9 QRNAPRITFGGPS--------DSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWF 53 ++++ R +FG S D + ++N + G R++ ++ + SWF Sbjct 7 KQSSSRASFGNRSGNGILKWADQSDQSRNVQTRGRRAQPKQTATSQLPSGGNVVPYYSWF 66 Query 54 TALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFY 111 + +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRWYFY Sbjct 67 SGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFY 126 Query 112 YLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGF 171 YLGTGP A YG + DG+ WVA+ A I R+P+++ AI + P GT LP+G+ Sbjct 127 YLGTGPHAKDQYGTDIDGVFWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGY 186 Query 172 YAEGSRGGSQA--SSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQ 229 Y EGS + S+ +S +S+ + + +S +P +A L+L +L + Sbjct 187 YIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGK 246 Query 230 LESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGN 285 +K Q VTK++A E + KPRQKR+ K V Q FG+RGP Q N Sbjct 247 DATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---N 294 Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYT 334 FG E+++ GT +P +A+ AP+A AFF SR+ + E L Y Sbjct 295 FGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYN 354 Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---- 390 GAI+ D F+ + +LN++++AY+ ++ PQRQ+ Q+ Sbjct 355 GAIRFDSTLSGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQG 404 Query 391 -----TVTLLPAADLDDFSKQL 407 +V + + S++L Sbjct 405 ENDNISVAAPKSRVQQNKSREL 426 >sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain Mebus) OX=11132 GN=N PE=1 SV=1 Length=448 Score = 363 bits (931), Expect = 2e-121, Method: Composition-based stats. Identities = 132/442 (30%), Positives = 211/442 (48%), Gaps = 65/442 (15%) Query 9 QRNAPRITFGGPS--------DSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWF 53 ++++ R +FG S D + ++N + G R++ ++ + SWF Sbjct 7 KQSSSRASFGNRSGNGILKWADQSDQSRNVQTRGRRAQPKQTATSQLPSGGNVVPYYSWF 66 Query 54 TALTQHGK-EDLKFPRGQGVPINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFY 111 + +TQ K ++ +F GQGVPI + GY+ R RR + DG + L PRWYFY Sbjct 67 SGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFY 126 Query 112 YLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGF 171 YLGTGP A YG + DG+ WVA+ A I R+P+++ AI + P GT LP+G+ Sbjct 127 YLGTGPHAKDQYGTDIDGVFWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGY 186 Query 172 YAEGSRGGSQA--SSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQ 229 Y EGS + S+ +S +S+ + + +S +P +A L+L +L + Sbjct 187 YIEGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGK 246 Query 230 LESKMSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGN 285 +K Q VTK++A E + KPRQKR+ K V Q FG+RGP Q N Sbjct 247 DATK---------PQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---N 294 Query 286 FGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYT 334 FG E+++ GT +P +A+ AP+A AFF SR+ + E L Y Sbjct 295 FGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYN 354 Query 335 GAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---- 390 GAI+ D F+ + +LN++++AY+ ++ PQRQ+ Q+ Sbjct 355 GAIRFDSTLSGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQG 404 Query 391 -----TVTLLPAADLDDFSKQL 407 +V + + S++L Sbjct 405 ENDNISVAAPKSRVQQNKSREL 426 >sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating encephalomyelitis virus (strain IAF-404) OX=230236 GN=N PE=3 SV=1 Length=449 Score = 362 bits (930), Expect = 2e-121, Method: Composition-based stats. Identities = 132/423 (31%), Positives = 205/423 (48%), Gaps = 58/423 (14%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72 +D + ++N + G R + ++ + SWF+ +TQ K ++ +F GQGV Sbjct 27 ADQSDQSRNVQTRGRRVQSKQTATSQQPSGGTVVPYYSWFSGITQFQKGKEFEFAEGQGV 86 Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+ Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKHQYGTDIDGVF 146 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR 191 WVA+ A I R+P+++ AI + P GT LP+G+Y EGS G S +SRS+SR+ Sbjct 147 WVASNQADINTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYIEGS-GRSAPNSRSTSRAP 205 Query 192 NSSR---NSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTK 248 N + + + +S + +A L+L +L + +K Q VTK Sbjct 206 NRAPSAGSRSRANSGNRTSTPGVTPDMADQIASLVLAKLGKDATK---------PQQVTK 256 Query 249 KSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQI 304 ++A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P + Sbjct 257 QTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPIL 313 Query 305 AQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILL 353 A+ AP+A AFF SR+ + E L Y GAI+ D F+ + +L Sbjct 314 AELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGAIRFDSTLSGFETIMKVL 373 Query 354 NKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFS 404 N++++AY+ ++ PQRQ+ Q+ +V + + S Sbjct 374 NQNLNAYQ---------HQEDGMMNISPKPQRQRGQKNGQVENDNISVAAPKSRVQQNKS 424 Query 405 KQL 407 ++L Sbjct 425 REL 427 >sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694008 GN=N PE=3 SV=1 Length=427 Score = 361 bits (925), Expect = 7e-121, Method: Composition-based stats. Identities = 177/386 (46%), Positives = 230/386 (60%), Gaps = 17/386 (4%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSP 80 ++ + N +RSG + RP PN T SWFT LTQHGK+ L FP GQGVP+N NS+P Sbjct 13 ANDNETPTNSQRSGRPRTKPRP--APNTTVSWFTGLTQHGKQPLAFPPGQGVPLNANSTP 70 Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140 GY+RR R+I G+G K L+PRWYFYY GTGPEA LP+ + KDGIIWV GA + Sbjct 71 AQNAGYWRRQDRKINTGNG-TKPLAPRWYFYYTGTGPEANLPFRSVKDGIIWVHENGATD 129 Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200 P GTRNPAN+ AIV Q GTTLPK F+ EG+ G SQ+SSR+SSRS + S + Sbjct 130 AP-SVFGTRNPANDPAIVTQFAPGTTLPKNFHIEGTGGNSQSSSRASSRSSSRSSSRNGR 188 Query 201 SSRGTSPARMAGNGGDA----ALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASK 256 S+ + A A +G +LLD +L +GKG +Q + +TKK A A + Sbjct 189 SNNSSRNASPAPHGVGDVVGAGTLSVLLDLQKRLADLEAGKGN-KQPKVITKKDAQAAKQ 247 Query 257 KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFG 316 K R KR ATK YNV QAFG RGP Q NFGD + + GT+ WPQIA+ APSASAF Sbjct 248 KMRHKRVATKGYNVVQAFGMRGPGPLQSNFGDMQYNKLGTEDPRWPQIAELAPSASAFMS 307 Query 317 MSRIGMEVTPSG------TWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKK 370 S+ + + +L+Y+GAIKLD K+PN+ + +L+ +IDAYK+FP E K Sbjct 308 TSQFKVTHQSNDENGEPVYFLSYSGAIKLDPKNPNYNKWMEILDANIDAYKSFPKKERK- 366 Query 371 DKKKKADETQALPQRQKKQQTVTLLP 396 +K D+ P + + L P Sbjct 367 -QKPSGDDAATAPATSQMEDVPELPP 391 >sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating encephalomyelitis virus (strain 67N) OX=230237 GN=N PE=3 SV=1 Length=449 Score = 361 bits (925), Expect = 2e-120, Method: Composition-based stats. Identities = 132/423 (31%), Positives = 205/423 (48%), Gaps = 58/423 (14%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72 +D + ++N + G R + ++ + SWF+ +TQ K ++ +F GQGV Sbjct 27 ADQSDQSRNVQTRGRRVQSKQTATSQQPSGGTVVPYYSWFSGITQFQKGKEFEFAEGQGV 86 Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+ Sbjct 87 PIAPGVPSTEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR 191 WVA+ A I R+P+++ AI + P GT LP+G+Y EGS G S +SRS+SR+ Sbjct 147 WVASNQADINTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYIEGS-GRSAPNSRSTSRAP 205 Query 192 NSSR---NSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTK 248 N + + + +S + +A L+L +L + +K Q VTK Sbjct 206 NRAPSAGSRSRANSGNRTSTPGVTPDMADQIASLVLAKLGKDATK---------PQQVTK 256 Query 249 KSAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQI 304 ++A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P + Sbjct 257 QTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPIL 313 Query 305 AQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILL 353 A+ AP+A AFF SR+ + E L Y GAI+ D F+ + +L Sbjct 314 AELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGAIRFDSTLSGFETIMKVL 373 Query 354 NKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFS 404 N++++AY+ ++ PQRQ+ Q+ +V + + S Sbjct 374 NQNLNAYQ---------HQEDGMMNISPKPQRQRGQKNGQVENDNVSVAAPKSRVQQNKS 424 Query 405 KQL 407 ++L Sbjct 425 REL 427 >sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain LSU-94LSS-051) OX=233261 GN=N PE=3 SV=1 Length=448 Score = 360 bits (924), Expect = 2e-120, Method: Composition-based stats. Identities = 129/422 (31%), Positives = 204/422 (48%), Gaps = 57/422 (14%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNTA-------SWFTALTQHGK-EDLKFPRGQGV 72 +D + ++N + G R++ ++ +A SWF+ +TQ K ++ +F GQGV Sbjct 27 ADQSDQSRNVQTRGRRAQPKQTATSQQPSAGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86 Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+ Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189 WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRTSS 206 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 +S+ + + +S +P +A L+L +L + +K Q VTK+ Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDATK---------PQQVTKQ 257 Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305 +A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314 Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354 + AP+A AFF SR+ + E L Y GAI+ D F+ + +LN Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374 Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFSK 405 ++++AY+ ++ PQRQ+ Q+ +V + + S+ Sbjct 375 ENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQGENDNISVAAPKSRVQQNKSR 424 Query 406 QL 407 +L Sbjct 425 EL 426 >sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=N PE=3 SV=1 Length=448 Score = 360 bits (923), Expect = 3e-120, Method: Composition-based stats. Identities = 125/396 (32%), Positives = 195/396 (49%), Gaps = 48/396 (12%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72 +D + ++N + G R++ ++ + SWF+ +TQ K ++ +F GQGV Sbjct 27 ADQSDQSRNVQTRGRRAQPKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86 Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+ Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVY 146 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189 WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRASS 206 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 +S+ + + +S +P +A L+L +L + +K Q VTK+ Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDAAK---------PQQVTKQ 257 Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305 +A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314 Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354 + AP+A AFF SR+ + E L Y GAI+ D F+ + +LN Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374 Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390 ++++AY+ ++ PQRQ+ Q+ Sbjct 375 ENLNAYQ----------QQDGTMNMSPKPQRQRGQK 400 >sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain OK-0514) OX=231432 GN=N PE=3 SV=1 Length=448 Score = 360 bits (923), Expect = 3e-120, Method: Composition-based stats. Identities = 128/422 (30%), Positives = 203/422 (48%), Gaps = 57/422 (14%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72 +D + ++N + G R++ ++ + SWF+ +TQ K ++ +F GQGV Sbjct 27 ADQSDQSRNVQTRGRRAQPKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86 Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+ Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189 WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRASS 206 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 +S+ + + +S +P +A L+L +L + +K Q VTK+ Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDATK---------PQQVTKQ 257 Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305 +A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314 Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354 + AP+A AFF SR+ + E L Y GAI+ D F+ + +LN Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374 Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFSK 405 ++++AY+ ++ PQRQ+ Q+ +V + + S+ Sbjct 375 ENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQGENDNISVAAPKSRVQQNKSR 424 Query 406 QL 407 +L Sbjct 425 EL 426 >sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=N PE=3 SV=1 Length=448 Score = 359 bits (921), Expect = 5e-120, Method: Composition-based stats. Identities = 125/396 (32%), Positives = 195/396 (49%), Gaps = 48/396 (12%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72 +D + ++N + G R++ ++ + SWF+ +TQ K ++ +F GQGV Sbjct 27 ADQSDQSRNVQTRGRRAQSKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86 Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+ Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVY 146 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189 WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRASS 206 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 +S+ + + +S +P +A L+L +L + +K Q VTK+ Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDAAK---------PQQVTKQ 257 Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305 +A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314 Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354 + AP+A AFF SR+ + E L Y GAI+ D F+ + +LN Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374 Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ 390 ++++AY+ ++ PQRQ+ Q+ Sbjct 375 ENLNAYQ----------QQDGTMNMSPKPQRQRGQK 400 >sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain LY-138) OX=11131 GN=N PE=3 SV=1 Length=448 Score = 359 bits (920), Expect = 7e-120, Method: Composition-based stats. Identities = 129/422 (31%), Positives = 200/422 (47%), Gaps = 57/422 (14%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72 +D + ++N + G R++ ++ + SWF+ +TQ K ++ +F GQGV Sbjct 27 ADQSDQSRNVQTRGRRAQPKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86 Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+ Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR 191 WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S +S S Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRASS 206 Query 192 NSSRNSTPGS--SRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 +S + S +P +A L+L +L + +K Q VTK+ Sbjct 207 RASSAGSRSRADSGNRTPTSGVTPDMADQIASLVLAKLGKDATK---------PQQVTKQ 257 Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305 +A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314 Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354 + AP+A AFF SR+ + E L Y GAI+ D F+ + +LN Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374 Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFSK 405 ++++AY+ ++ PQRQ+ Q+ +V + + S+ Sbjct 375 ENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQGENDNISVAAPKSRVQQNKSR 424 Query 406 QL 407 +L Sbjct 425 EL 426 >sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain F15) OX=11129 GN=N PE=3 SV=1 Length=448 Score = 358 bits (919), Expect = 1e-119, Method: Composition-based stats. Identities = 127/422 (30%), Positives = 202/422 (48%), Gaps = 57/422 (14%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72 +D + ++N + G R++ ++ + SWF+ +TQ K ++ +F GQGV Sbjct 27 ADQSDQSRNVQTRGRRAQPKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGV 86 Query 73 PINTNSSPDDQIGYYRRATRR-IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 PI + GY+ R RR + DG + L PRWYFYYLGTGP A YG + DG+ Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTRDGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189 WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S Sbjct 147 WVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRASS 206 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 +S+ + + +S +P + L+L +L + +K Q VTK+ Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIVSLVLAKLGKDATK---------PQQVTKQ 257 Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305 +A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A Sbjct 258 TAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314 Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354 + AP+A AFF SR+ + E L Y GAI+ D F+ + +LN Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374 Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFSK 405 ++++AY+ ++ PQRQ+ Q+ +V + + S+ Sbjct 375 ENLNAYQ----------QQDGMMNMSPKPQRQRGQKNGQGENDNISVAAPKSRVQQNKSR 424 Query 406 QL 407 +L Sbjct 425 EL 426 >sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis virus (strain V18/91) OX=231427 GN=N PE=2 SV=1 Length=409 Score = 355 bits (911), Expect = 5e-119, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 169/383 (44%), Gaps = 28/383 (7%) Query 11 NAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFP--- 67 +A ++ F P+ ++N + P+ ASWF +L + K+ P Sbjct 2 SAGKLKFDSPAPILKLSKNTGST-------PPKVGGTGQASWFQSLKE--KKRTGTPPTF 52 Query 68 RGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANK 127 G GVP N+N P Q GY++R R + G G K ++ WYFYY GTGP L +G + Sbjct 53 EGSGVPDNSNVKPQFQHGYWKRQ-HRYKPGKGGRKPVADAWYFYYTGTGPFGDLKWGDSN 111 Query 128 DGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSS 187 D ++WV +GA + + G R+P L+ +G + + ++ + S+ Sbjct 112 DDVVWVKAKGADTSKIGNYGVRDPDKFDQAPLRFTEGGPDNNYRWDFIALNRGRSRNSSA 171 Query 188 SRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVT 247 SR +SR + SSRG +R+ + D A +++ QQ+ G ++ Sbjct 172 VTSRENSRPGSRDSSRGRQRSRVDDDLIDRAAKIIMQ--------------QQKNGSRIS 217 Query 248 KKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQF 307 K+ A E +++ KR + + FG+R Q NFGD ++I +G + Sbjct 218 KQKANEMAERKYHKRAIAPGKRIDEVFGQRRKGQAP-NFGDDKMIEEGVKDGRLTAMLNL 276 Query 308 APSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTE 367 P+ A S + ++ P G + ++ + +DP F + + ++ +D T P + Sbjct 277 VPTPHACLLGSMVTAKLQPDGLHVRFSFETVVKREDPQFANYSKICDECVDGVGTRPKDD 336 Query 368 PKKDKKKKADETQALPQRQKKQQ 390 P + + + + P K+Q+ Sbjct 337 PTPRSRAASKDRNSAPATPKQQR 359 >sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694006 GN=N PE=3 SV=1 Length=468 Score = 354 bits (908), Expect = 1e-117, Method: Composition-based stats. Identities = 152/366 (42%), Positives = 203/366 (55%), Gaps = 17/366 (5%) Query 12 APRITFGGPSDSTGSN---QNGERSGARSKQ----------RRPQGLPNNTASWFTALTQ 58 +P++TF SD + S +NG R+GAR K +P+ P SWF L Q Sbjct 13 SPKVTFKQESDGSDSESERRNGNRNGARPKNNNSRGSAPKPEKPKAAPPQNVSWFAPLVQ 72 Query 59 HGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPE 118 GK +L+FPRG+GVP++ + GY+ R R + G GK +PRWYFYY GTG Sbjct 73 TGKAELRFPRGEGVPVSQGVDSTYEHGYWLRTQRSFQKG-GKQVLANPRWYFYYTGTGRF 131 Query 119 AGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRG 178 L +G I+WV EGA +GTRNP+N+ AI +QL G +PKGFYAEG Sbjct 132 GDLRFGTKNPDIVWVGQEGANINRLGDMGTRNPSNDGAIPVQLAGG--IPKGFYAEGRGS 189 Query 179 GSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSG-K 237 + S S + SR SSR ++ SSRG SP R A N L+ +L +LES++SG K Sbjct 190 RGNSRSSSRNSSRASSRGNSRASSRGASPGRPAANPSTEPWMAYLVQKLERLESQVSGTK 249 Query 238 GQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTD 297 + VTK AA +KK R KRTA K VT +GRRGP +GNFGD+E+I+ GTD Sbjct 250 PATKNPVQVTKNEAAANAKKLRHKRTAHKGSGVTVNYGRRGPGDLEGNFGDREMIKLGTD 309 Query 298 YKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHI 357 + AQ AP+ S+F MS + WL Y GAIKL DPN++ +L +++ Sbjct 310 DPRFAAAAQMAPNVSSFLFMSHLSTRDEDDALWLHYKGAIKLPKDDPNYEQWTKILAENL 369 Query 358 DAYKTF 363 +AYK F Sbjct 370 NAYKDF 375 >sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43 OX=31631 GN=N PE=1 SV=1 Length=448 Score = 351 bits (901), Expect = 5e-117, Method: Composition-based stats. Identities = 125/422 (30%), Positives = 199/422 (47%), Gaps = 57/422 (14%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNT-------ASWFTALTQHGK-EDLKFPRGQGV 72 +D + +N + G R++ ++ + SWF+ +TQ K ++ +F GQG Sbjct 27 ADQSDQVRNVQTRGRRAQPKQTATSQQPSGGNVVPYYSWFSGITQFQKGKEFEFVEGQGP 86 Query 73 PINTNSSPDDQIGYYRRATR-RIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGII 131 PI + GY+ R R + DG + L PRWYFYYLGTGP A YG + DG+ Sbjct 87 PIAPGVPATEAKGYWYRHNRGSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVY 146 Query 132 WVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQA--SSRSSSR 189 WVA+ A I R+P+++ AI + P GT LP+G+Y EGS + S+ +S Sbjct 147 WVASNQADVNTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRTSS 206 Query 190 SRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKK 249 +S+ + + +S +P +A L+L +L + +K Q VTK Sbjct 207 RASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDATK---------PQQVTKH 257 Query 250 SAAEASK----KPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIA 305 +A E + KPRQKR+ K V Q FG+RGP Q NFG E+++ GT +P +A Sbjct 258 TAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILA 314 Query 306 QFAPSASAFFGMSRIGM-----------EVTPSGTWLTYTGAIKLDDKDPNFKDQVILLN 354 + AP+A AFF SR+ + E L Y GAI+ D F+ + +LN Sbjct 315 ELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLN 374 Query 355 KHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQ---------TVTLLPAADLDDFSK 405 ++++AY+ ++ PQRQ+ + +V + + + S+ Sbjct 375 ENLNAYQ----------QQDGMMNMSPKPQRQRGHKNGQGENDNISVAVPKSRVQQNKSR 424 Query 406 QL 407 +L Sbjct 425 EL 426 >sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=N PE=1 SV=1 Length=411 Score = 344 bits (881), Expect = 2e-114, Method: Composition-based stats. Identities = 196/411 (48%), Positives = 258/411 (63%), Gaps = 28/411 (7%) Query 11 NAPR-ITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRG 69 APR ++F +D T +N S R + +P+ PNNT SW+T LTQHGK L FP G Sbjct 5 AAPRAVSFADNNDITNTN----LSRGRGRNPKPRAAPNNTVSWYTGLTQHGKVPLTFPPG 60 Query 70 QGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDG 129 QGVP+N NS+P GY+RR R+I G+G +K L+PRWYFYY GTGPEA LP+ A KDG Sbjct 61 QGVPLNANSTPAQNAGYWRRQDRKINTGNG-IKQLAPRWYFYYTGTGPEAALPFRAVKDG 119 Query 130 IIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 189 I+WV +GA + P GTRNP N++AIV Q GT LPK F+ EG+ G SQ+SSR+SS Sbjct 120 IVWVHEDGATDAPST-FGTRNPNNDSAIVTQFAPGTKLPKNFHIEGTGGNSQSSSRASSV 178 Query 190 SRNSSRNSTPGS-----SRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQ 244 SRNSSR+S+ GS +RGTSP G LL LD LN+L++ SGK +Q Q + Sbjct 179 SRNSSRSSSQGSRSGNSTRGTSPG--PSGIGAVGGDLLYLDLLNRLQALESGKVKQSQPK 236 Query 245 TVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQI 304 +TKK AA A K R KRT+TK++N+ QAFG RGP QGNFGD +L + GT+ WPQI Sbjct 237 VITKKDAAAAKNKMRHKRTSTKSFNMVQAFGLRGPGDLQGNFGDLQLNKLGTEDPRWPQI 296 Query 305 AQFAPSASAFFGMSRIGMEVTPSG------TWLTYTGAIKLDDKDPNFKDQVILLNKHID 358 A+ AP+ASAF GMS+ + + +L Y+GAIKLD K+PN+ + LL ++ID Sbjct 297 AELAPTASAFMGMSQFKLTHQNNDDHGNPVYFLRYSGAIKLDPKNPNYNKWLELLEQNID 356 Query 359 AYKTFPPTEPKKDKKKK--ADETQALPQ------RQKKQQTVTLLPAADLD 401 AYKTFP E K+ K+ D+ P+ Q+ + ++ P +D Sbjct 357 AYKTFPKKEKKQKAPKEESTDQMSEPPKEHRVQGTQRTRTRPSVQPGPMID 407 >sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694007 GN=N PE=3 SV=1 Length=423 Score = 340 bits (872), Expect = 7e-113, Method: Composition-based stats. Identities = 181/379 (48%), Positives = 232/379 (61%), Gaps = 24/379 (6%) Query 34 GARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRR 93 R + +P+ PNNT SW+T LTQHGK L FP GQGVP+N NS+ GY+RR R+ Sbjct 25 RGRGRNPKPRPAPNNTVSWYTGLTQHGKNPLAFPPGQGVPLNANSTTAQNAGYWRRQDRK 84 Query 94 IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPAN 153 I G+G +K L+PRW+FYY GTGPEA LP+ + KDGI+WV EGA + P GTRNPAN Sbjct 85 INTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPAN 142 Query 154 NAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG-----SSRGTSPA 208 +AAIV Q GT +PK F+ EG+ G SQ+SSR+SS SRNSSR+S+ G +SRGTSP Sbjct 143 DAAIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSNSRNSSRSSSRGGRSTSNSRGTSPV 202 Query 209 RMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAY 268 ++ AL LL L + + G+ +Q + VTKK AA A K R KR ATK + Sbjct 203 SHGVGSAESLAALPLLLDLQKRLA-DLESGKSKQPKVVTKKDAAAAKNKMRHKRVATKGF 261 Query 269 NVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG 328 NVTQAFG RGP QGNFGD + GT+ WPQ+A+ APSASAF MS+ + + Sbjct 262 NVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQSND 321 Query 329 ------TWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQA- 381 +L+Y+GAIKLD K+PN+K + LL +IDAYKTFP E K + + Sbjct 322 DKGDPIYFLSYSGAIKLDPKNPNYKKWLELLESNIDAYKTFPKKERKPKTTEDGAVASSS 381 Query 382 ---------LPQRQKKQQT 391 PQR+ K + Sbjct 382 ASQMEDVDAKPQRKPKSRV 400 >sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005 OX=389230 GN=N PE=3 SV=1 Length=424 Score = 340 bits (871), Expect = 8e-113, Method: Composition-based stats. Identities = 176/367 (48%), Positives = 227/367 (62%), Gaps = 14/367 (4%) Query 34 GARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRR 93 R + +P+ PNNT SW+T LTQHGK L FP GQGVP+N NS+ GY+RR R+ Sbjct 25 RGRGRNPKPRPAPNNTVSWYTGLTQHGKNPLAFPPGQGVPLNANSTTAQNAGYWRRQDRK 84 Query 94 IRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPAN 153 I G+G +K L+PRW+FYY GTGPEA LP+ + KDGI+WV EGA + P GTRNPAN Sbjct 85 INTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDGIVWVYEEGATDAP-SVFGTRNPAN 142 Query 154 NAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTP-----GSSRGTSPA 208 +AAIV Q GT +PK F+ EG+ G SQ+SSR+SS SRNSSR+++ +SRGTSP Sbjct 143 DAAIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSNSRNSSRSNSRGGRSTSNSRGTSPV 202 Query 209 RMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAY 268 ++ AL LL L + + G+ +Q + VTKK AA A K R KR ATK + Sbjct 203 SHGVGSAESLAALPLLLDLQKRLA-DLESGKSKQPKVVTKKDAAAAKNKMRHKRVATKGF 261 Query 269 NVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSG 328 NVTQAFG RGP QGNFGD + GT+ WPQ+A+ APSASAF MS+ + + Sbjct 262 NVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLTHQSND 321 Query 329 ------TWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQAL 382 +L+Y+GAIKLD K+PN+K + LL +IDAYKTFP E K + + Sbjct 322 DKGDPIYFLSYSGAIKLDPKNPNYKKWLELLEANIDAYKTFPKKERKPKTTEDGAVVASS 381 Query 383 PQRQKKQ 389 Q + Sbjct 382 SASQMED 388 >sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain BGF10) OX=441619 GN=N PE=3 SV=1 Length=382 Score = 302 bits (774), Expect = 8e-99, Method: Composition-based stats. Identities = 99/361 (27%), Positives = 172/361 (48%), Gaps = 35/361 (10%) Query 51 SWFTALT-QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWY 109 S+F +T + G + VP+ + D QIGY+ R R R G+ KDL RW+ Sbjct 34 SFFNPVTLKQGSKFWDLCPRDFVPLKIGNK-DQQIGYWNRQIR-YRMVKGQRKDLPERWF 91 Query 110 FYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPK 169 FYYLGTGP A + DG++WVA EGA+ P +GTR NN + L+ +P Sbjct 92 FYYLGTGPHADAKFKQKLDGVVWVAKEGAMTKPTT-LGTRG-TNNESKALKF--DVKVPS 147 Query 170 GFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQ 229 F E ++ + SRS SRS++ +R + G + + N D ++ +L L + Sbjct 148 EFQLEVNQSRDNSRSRSQSRSQSRTRAQSRG-------RQQSNNKKDDSVEQAVLAALKK 200 Query 230 L------ESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQ 283 L + + + +++ + T+ + + K KRTA K +VT+ +G R + Sbjct 201 LGVDTEKQQQRARSKSKERSNSKTRDTTPKNENKHTWKRTAGKG-DVTKFYGARS---SS 256 Query 284 GNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKD 343 NFGD +L+ G KH+PQ+A+ PS S+ S + +T+T L D Sbjct 257 ANFGDSDLVANGNSAKHYPQLAECVPSVSSILFGSHWTAKEDGDQIEVTFTHKYHLPKDD 316 Query 344 PNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDF 403 P + I+AY P+E K+++ + +++ + +++ ++P A +++ Sbjct 317 PK----TGQFLQQINAYAR--PSEVAKEQRLRKARSKSAERVEQE-----VVPDALTENY 365 Query 404 S 404 + Sbjct 366 T 366 >sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain FS772/70) OX=11150 GN=N PE=1 SV=1 Length=382 Score = 300 bits (768), Expect = 8e-98, Method: Composition-based stats. Identities = 100/390 (26%), Positives = 176/390 (45%), Gaps = 42/390 (11%) Query 22 DSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT-QHGKEDLKFPRGQGVPINTNSSP 80 D + + S R P S+F +T Q G + VP + Sbjct 12 DESTKIRGRSNSRGRKSNNIP-------LSFFNPITLQQGSKFWNLCPRDFVPKGIGNR- 63 Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140 D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122 Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200 P +G+R ANN + L+ +P F E + + S S Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLEV-------NQSRDNSRSRSQSRSRSR 171 Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTVTKKSAAEA 254 + + + + N D ++ +L L +L + + S +++ + T+ + + Sbjct 172 NRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVDTEKQQQRSCSKSKERSNSKTRDTTPKN 231 Query 255 SKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAF 314 K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ PS S+ Sbjct 232 ENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSI 287 Query 315 FGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKK 374 S + +T+T L DP + + + I+AY P+E K+++K Sbjct 288 LFGSYWTSKEDGDQIEVTFTHKYHLPKDDPKTEQFL----QQINAYAR--PSEVAKEQRK 341 Query 375 KADETQALPQRQKKQQTVTLLPAADLDDFS 404 + +++ + +++ ++P A +++++ Sbjct 342 RKSRSKSAERSEQE-----VVPDALIENYT 366 >sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain K378) OX=33732 GN=N PE=3 SV=1 Length=382 Score = 300 bits (768), Expect = 8e-98, Method: Composition-based stats. Identities = 105/393 (27%), Positives = 184/393 (47%), Gaps = 37/393 (9%) Query 21 SDSTGSNQNGERSGARSKQRRPQGLPNNTA--SWFTALT-QHGKEDLKFPRGQGVPINTN 77 ++ Q G + +G NNT S+F +T Q G + VP Sbjct 2 ANQGQRVQWGVDITKKRGLSNSRGRKNNTIPLSFFNPITLQQGSKFWNLCPRDFVPKGIG 61 Query 78 SSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEG 137 + D QIGY+ R +R R G+ K+L RW+FYYLGTGP A + DG++WVA +G Sbjct 62 NK-DQQIGYWNRQSR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDRIDGVVWVAKDG 119 Query 138 ALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNS 197 A+N P +G R ANN + L+ +P F E ++ + S S SRS++ +R+ Sbjct 120 AMNKPTT-LGNRG-ANNESKALKF--DGKVPGEFQLEVNQSRDNSRSPSQSRSQSRNRSQ 175 Query 198 TPGSSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTVTKKSA 251 + G + + N D ++ +L L +L + + S +++ + T+ + Sbjct 176 SRG-------RQQSNNKKDDSVEQAVLAALKKLGVDTEKQQQRSRSKSKERSNSKTRDTT 228 Query 252 AEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSA 311 + K KRTA K +VT+ +G R + NFGD +L+ G KH+PQ+A+ PS Sbjct 229 PKNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNGAKHYPQLAECVPSV 284 Query 312 SAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKD 371 S+ S + +T+T L DP + I+AY P+E K+ Sbjct 285 SSILFGSYWTAKEDGDQIEVTFTHKYHLPKDDPK----TGQFLQQINAYAR--PSEVAKE 338 Query 372 KKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 ++++ +++ + +++ ++P A ++++ Sbjct 339 QRQRKARSKSAERVEQE-----VVPDALTENYT 366 >sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronavirus (strain 86/137004 / isolate British) OX=33736 GN=N PE=3 SV=1 Length=382 Score = 300 bits (767), Expect = 1e-97, Method: Composition-based stats. Identities = 100/398 (25%), Positives = 180/398 (45%), Gaps = 45/398 (11%) Query 14 RITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT-QHGKEDLKFPRGQGV 72 R+++G D + + S R P S+F +T Q G + V Sbjct 7 RVSWG---DESTKIRGRSNSRGRKINNIP-------LSFFNPITLQQGAKFWNSCPRDFV 56 Query 73 PINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 P + D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++W Sbjct 57 PKGIGNR-DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVW 114 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA +GA+N P +G+R ANN + L+ +P F E + + Sbjct 115 VAKDGAMNKPTT-LGSRG-ANNESKALKF--DGKVPGEFQLEV-------NQSRDNSRSR 163 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTV 246 S S + + + + N D ++ +L L +L + + S +++ + Sbjct 164 SQSRSRSRNRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSK 223 Query 247 TKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQ 306 T+ + + K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ Sbjct 224 TRDTTPKNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAE 279 Query 307 FAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPT 366 PS S+ S + +T+T L P + + + I+AY P+ Sbjct 280 CVPSVSSILFGSYWTSKEDGDQIEVTFTHKYHLPKDHPKTEQFL----QQINAYAC--PS 333 Query 367 EPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 E K+++K+ +++ + +++ ++P + +++++ Sbjct 334 EVAKEQRKRKSRSKSAERSEQE-----VVPDSLIENYT 366 >sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronavirus (strain RM4) OX=11148 GN=N PE=3 SV=1 Length=382 Score = 297 bits (759), Expect = 2e-96, Method: Composition-based stats. Identities = 98/390 (25%), Positives = 176/390 (45%), Gaps = 42/390 (11%) Query 22 DSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT-QHGKEDLKFPRGQGVPINTNSSP 80 D + + S R P S+F +T Q G + VP + Sbjct 12 DESTKIRGRSNSRGRKINNIP-------LSFFNPITLQQGAKFWNSCPRDFVPKGIGNR- 63 Query 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALN 140 D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++WVA +GA+N Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122 Query 141 TPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPG 200 P +G+R ANN + L+ +P F E + + S S Sbjct 123 KPTT-LGSRG-ANNESKALKF--DGKVPGEFQLEV-------NQSRDNSRSRSQSRSRSR 171 Query 201 SSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTVTKKSAAEA 254 + + + + N D ++ +L L +L + + S +++ + T+ + + Sbjct 172 NRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSKTRDTTPKN 231 Query 255 SKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAF 314 K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ PS S+ Sbjct 232 ENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSI 287 Query 315 FGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKK 374 S + +T+T L P + + + I+AY + P+E K+++K Sbjct 288 LFGSYWTSKEDGDQIEVTFTHKYHLPKDHPKTEQFL----QQINAYAS--PSELAKEQRK 341 Query 375 KADETQALPQRQKKQQTVTLLPAADLDDFS 404 + +++ + +++ ++P + +++++ Sbjct 342 RKSRSKSAERSEQE-----VVPDSLIENYT 366 >sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=N PE=1 SV=2 Length=382 Score = 297 bits (759), Expect = 2e-96, Method: Composition-based stats. Identities = 103/398 (26%), Positives = 177/398 (44%), Gaps = 45/398 (11%) Query 14 RITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALT-QHGKEDLKFPRGQGV 72 R+++G S T + S R P S+F +T Q G + V Sbjct 7 RVSWGDESTKT---RGRSNSRGRKNNNIP-------LSFFNPITLQQGSKFWNLCPRDFV 56 Query 73 PINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIW 132 P + D QIGY+ R TR R G+ K+L RW+FYYLGTGP A + DG++W Sbjct 57 PKGIGNR-DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVW 114 Query 133 VATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 VA +GA+N P +G+R ANN + L+ +P F E + + Sbjct 115 VAKDGAMNKPTT-LGSRG-ANNESKALKF--DGKVPGEFQLEV-------NQSRDNSRSR 163 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQL------ESKMSGKGQQQQGQTV 246 S S + + + N D ++ +L L +L + + S +++ + Sbjct 164 SQSRSRSRNRSQSRGRQQFNNKKDDSVEQAVLAALKKLGVDTEKQQQRSRSKSKERSNSK 223 Query 247 TKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQ 306 T+ + + K KRTA K +VT+ +G R + NFGD +L+ G+ KH+PQ+A+ Sbjct 224 TRDTTPKNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDTDLVANGSSAKHYPQLAE 279 Query 307 FAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPT 366 PS S+ S + +T+T L DP + I+AY P+ Sbjct 280 CVPSVSSILFGSYWTSKEDGDQIEVTFTHKYHLPKDDPK----TGQFLQQINAYAR--PS 333 Query 367 EPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 E K+++K+ +++ + ++ ++P A +++++ Sbjct 334 EVAKEQRKRKSRSKSAERSEQ-----DVVPDALIENYT 366 >sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=N PE=1 SV=1 Length=377 Score = 294 bits (752), Expect = 2e-95, Method: Composition-based stats. Identities = 103/348 (30%), Positives = 171/348 (49%), Gaps = 23/348 (7%) Query 51 SWFTALT-QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWY 109 S++ +T + G + VP + D QIGY+ R R R G+ K+L+ RW+ Sbjct 34 SFYNPITLEQGSKFWNLCPRDLVPKGIGNK-DQQIGYWNRQIR-YRIVKGQRKELAERWF 91 Query 110 FYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPK 169 FY+LGTGP A + DG+ WVA +GA+N P +GTR NN + L+ +P Sbjct 92 FYFLGTGPHADAKFKDKIDGVFWVARDGAMNKPTT-LGTRG-TNNESKPLRF--DGKIPP 147 Query 170 GFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQ 229 F E + S+ +SRS S+SR+ SRN SRG + N + + +L++L Sbjct 148 QFQLEVN--RSRNNSRSGSQSRSVSRN--RSQSRGRHHSNNQNNNVEDTIVA-VLEKLGV 202 Query 230 LESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQ 289 + + S +++ + + + + + K K+TA K +VT +G R + NFGD Sbjct 203 TDKQRSRSKPRERSDSKPRDTTPKNANKHTWKKTAGKG-DVTTFYGARS---SSANFGDS 258 Query 290 ELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQ 349 +L+ G K +PQIA+ PS S+ S+ E +T T L D + Sbjct 259 DLVANGNAAKCYPQIAECVPSVSSIIFGSQWSAEEAGDQVKVTLTHTYYLPKDD----AK 314 Query 350 VILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPA 397 + IDAYK P+E KD++++ +++ ++ ++ +VTL+ A Sbjct 315 TSQFLEQIDAYKR--PSEVAKDQRQRRSRSKSA-DKKPEELSVTLVEA 359 >sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain Insavc-1) OX=36391 GN=N PE=3 SV=1 Length=381 Score = 293 bits (750), Expect = 4e-95, Method: Composition-based stats. Identities = 98/355 (28%), Positives = 173/355 (49%), Gaps = 24/355 (7%) Query 51 SWFTALT-QHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWY 109 S+F +T + G + VP + D QIGY+ R TR R G+ K+L +W+ Sbjct 34 SFFNPITLEQGSKFWDLCPRDFVPKGIGNK-DQQIGYWNRQTR-YRMVKGRRKNLPEKWF 91 Query 110 FYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPK 169 FYYLGTGP A + DG++WVA ++ P +GTR NN + L+ +P Sbjct 92 FYYLGTGPHADAKFKQKLDGVVWVARGDSMTKPTT-LGTRG-TNNESKALKF--DVKVPS 147 Query 170 GFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQ 229 F+ E ++ + SRS SRS++ +R+ + G R S + N A LA L ++ Sbjct 148 EFHLEVNQLRDNSRSRSQSRSQSRNRSQSRG--RQLSNNKKDDNVEQAVLAALKKLGVDT 205 Query 230 LESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQ 289 + + S +++ + T+ + + K KRTA K +VT+ +G R + NFGD Sbjct 206 EKQQRSRSKSKERSSSKTRDTTPKNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDS 261 Query 290 ELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQ 349 +L+ G KH+PQ+A+ PS S+ S + +T+T L DP Sbjct 262 DLVANGNGAKHYPQLAECVPSVSSILFGSHWTAKEDGDQIEVTFTHKYHLPKDDPK---- 317 Query 350 VILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFS 404 + I+AY P+E K+++++ ++++ + +++ ++P A ++++ Sbjct 318 TGQFLQQINAYAR--PSEVAKEQRQRKARSKSVERVEQE-----VVPDALTENYT 365 >sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 OX=693999 GN=N PE=1 SV=1 Length=394 Score = 256 bits (654), Expect = 2e-80, Method: Composition-based stats. Identities = 97/375 (26%), Positives = 143/375 (38%), Gaps = 32/375 (9%) Query 41 RPQGLPNNTA--SWFTALTQHGKEDL-KFPRGQGVPINTNSSPDDQIGYYRRATRRIRGG 97 +P+G S F L ++ L K VP D QIGY+ R R Sbjct 7 QPRGRSKGRVPLSLFAPLRVTDEKPLYKVLPNNAVPQGMGGK-DQQIGYWVEQQR-WRMR 64 Query 98 DGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAI 157 G DL W+FY+LGTGP + LP+ DG+ WVA +GA P +G R + + Sbjct 65 RGDRVDLPSNWHFYFLGTGPHSDLPFRKRTDGVFWVAIDGAKTQPTG-LGVRKSSEKPLV 123 Query 158 VLQLP-----------QGTTLPKGFYAEGSRGGSQASSRSSS-----RSRNSSRNSTPGS 201 + T + G Q++SR +S +SRN SRN + + Sbjct 124 P-KFKNKLPNNVEIVEPTTPNNSRANSRSRSRGGQSNSRGNSQNRGDKSRNQSRNRSQSN 182 Query 202 SRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQK 261 RG+ AL L + SGK + AEA KP + Sbjct 183 DRGSDSRDDLVAAVKKALEDLGVGAAKPKGKTQSGKNTPKNKSRSGSVQRAEAKDKPEWR 242 Query 262 RTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIG 321 RT + +V FG RG + NFG E + +G + + Q A P A+A + Sbjct 243 RTPSGDESVEVCFGPRGGTR---NFGSSEFVAKGVNAPGYAQAASLVPGAAALLFGGNVA 299 Query 322 MEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQA 381 + G +TYT + + D N + + +DAYK P +K K+ + Sbjct 300 TKEMADGVEITYTYKMLVPKDDKNLE----IFLAQVDAYKLGDPKPQRKVKRSRTP--TP 353 Query 382 LPQRQKKQQTVTLLP 396 P + V P Sbjct 354 KPATEPVYDDVAADP 368 >sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=N PE=1 SV=1 Length=441 Score = 243 bits (620), Expect = 6e-75, Method: Composition-based stats. Identities = 99/386 (26%), Positives = 147/386 (38%), Gaps = 75/386 (19%) Query 36 RSKQRRPQGLPNNTASWFTALTQHGKEDL-KFPRGQGVPINTNSSPDDQIGYYRRATRRI 94 R ++R P S + L + L K VP N + D QIGY+ R Sbjct 9 RGRKRVP-------LSLYAPLRVTNDKPLSKVLANNAVPTNKGNK-DQQIGYWNEQIR-W 59 Query 95 RGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANN 154 R G+ + W+FYYLGTGP L Y +G+ WVA EGA P ++G R + Sbjct 60 RMRRGERIEQPSNWHFYYLGTGPHGDLRYRTRTEGVFWVAKEGAKTEPT-NLGVRKASEK 118 Query 155 AAIV---------LQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSS--R 203 I +++ + T P SR ++RS S S N N + G+S R Sbjct 119 PIIPKFSQQLPSVVEIVEPNTPPASRANSRSRSRGNGNNRSRSPSNNRGNNQSRGNSQNR 178 Query 204 GTSPARMAG-------------------------NGGDAALALLLLDRLNQLESKMSGKG 238 G + R A GG + L+ + L+S G+ Sbjct 179 GNNQGRGASQNRGGNNNNNNKSRNQSNNRNQSNDRGGVTSRDDLVAAVKDALKSLGIGEN 238 Query 239 QQQQ--------------GQTVTKKSAAEASKK-------PRQKRTATKAYNVTQAFGRR 277 + G+ KK+ + A+ K P +R +V FG R Sbjct 239 PDRHKQQQKPKQEKSDNSGKNTPKKNKSRATSKERDLKDIPEWRRIPKGENSVAACFGPR 298 Query 278 GPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAI 337 G + NFGD E + +G D + QIA AP+ +A + + +TY + Sbjct 299 GGFK---NFGDAEFVEKGVDASGYAQIASLAPNVAALLFGGNVAVRELADSYEITYNYKM 355 Query 338 KLDDKDPNFKDQVILLNKHIDAYKTF 363 + DPN V LL +DA+KT Sbjct 356 TVPKSDPN----VELLVSQVDAFKTG 377 >sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E OX=11137 GN=N PE=1 SV=2 Length=389 Score = 232 bits (590), Expect = 4e-71, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 148/378 (39%), Gaps = 33/378 (9%) Query 50 ASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWY 109 S ++ L ++ K VPIN + IGY+ +R R GK DLSP+ + Sbjct 22 YSLYSPLLVDSEQPWKVIPRNLVPINKKDK-NKLIGYWN-VQKRFRTRKGKRVDLSPKLH 79 Query 110 FYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVL---QLPQGTT 166 FYYLGTGP + +G++WVA +GA P + G R + I +LP G T Sbjct 80 FYYLGTGPHKDAKFRERVEGVVWVAVDGAKTEPTGY-GVRRKNSEPEIPHFNQKLPNGVT 138 Query 167 LPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDR 226 + + + S S R + ++ P S R + AAL L D+ Sbjct 139 VVEEPDSRAPSRSQSRSQ-SRGRGESKPQSRNPSSDRNHNSQDDIMKAVAAALKSLGFDK 197 Query 227 LNQLESKMSGKG------------QQQQGQTVTKKSAAEAS------KKPRQKRTATKAY 268 + + K + G Q +++ + ++E +KPR KR Sbjct 198 PQEKDKKSAKTGTPKPSRNQSPASSQTSAKSLARSQSSETKEQKHEMQKPRWKRQPNDDV 257 Query 269 --NVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTP 326 NVTQ FG R NFG ++ G K +PQ A+ PS +A S I + + Sbjct 258 TSNVTQCFGPR---DLDHNFGSAGVVANGVKAKGYPQFAELVPSTAAMLFDSHIVSKESG 314 Query 327 SGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQ 386 + LT+T + + P+ + LN + P P + +Q P Sbjct 315 NTVVLTFTTRVTVPKDHPHLGKFLEELNAFTREMQQHPLLNPSALEFNP---SQTSPATA 371 Query 387 KKQQTVTLLPAADLDDFS 404 + + + +D+ + Sbjct 372 EPVRDEVSIETDIIDEVN 389 >sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63 OX=277944 GN=N PE=1 SV=1 Length=377 Score = 206 bits (525), Expect = 2e-61, Method: Composition-based stats. Identities = 96/382 (25%), Positives = 142/382 (37%), Gaps = 37/382 (10%) Query 33 SGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATR 92 AR K P S K + VPI + D+QIGY+ R Sbjct 10 RAARKKFPPPSFYMPLLVS-------SDKAPYRVIPRNLVPIGKGNK-DEQIGYWNVQER 61 Query 93 RIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPA 152 R G+ DL P+ +FYYLGTGP L + DG++WVA EGA +G R Sbjct 62 -WRMRRGQRVDLPPKVHFYYLGTGPHKDLKFRQRSDGVVWVAKEGAKTVNTS-LGNRKRN 119 Query 153 NNAAIVLQLPQGTTLPKGFYA---EGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPAR 209 L+ LP E S +S SS NS +S S + + Sbjct 120 ---QKPLEPKFSIALPPELSVVEFEDRSNNSSRASSRSSTRNNSRDSSRSTSRQQSRTRS 176 Query 210 MAGNGGDAALALLLLDRLN---------QLESKMSGKGQQQQGQTVTKKSAAEASKKPRQ 260 + +A + L N S S + + + + KKPR Sbjct 177 DSNQSSSDLVAAVTLALKNLGFDNQSKSPSSSGTSTPKKPNKPLSQPRADKPSQLKKPRW 236 Query 261 KRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRI 320 KR T+ NV Q FG R N GD +L++ G D K +PQ+A+ P+ +A F S + Sbjct 237 KRVPTREENVIQCFGPR---DFNHNMGDSDLVQNGVDAKGFPQLAELIPNQAALFFDSEV 293 Query 321 GMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQ 380 + +TYT + + + N + + I A+ T+P K+ ++ + Sbjct 294 STDEVGDNVQITYTYKMLVAKDNKNLPKFI----EQISAF-----TKPSSIKEMQSQSSH 344 Query 381 ALPQRQKKQQTVTLLPAADLDD 402 P AD D Sbjct 345 VAQNTVLNASIPESKPLADDDS 366 >sp|A9KNW4|IF2_LACP7 Translation initiation factor IF-2 OS=Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) OX=357809 GN=infB PE=3 SV=1 Length=1131 Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 54/318 (17%), Positives = 87/318 (27%), Gaps = 44/318 (14%) Query 1 MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHG 60 M+ G + + +T G ++S + Q+ + RRPQG N T G Sbjct 98 MTAQGERKNMSEQNVT-TGSTESEDNIQSVGDRKYQHTDRRPQG---NNGEGPQTSTNSG 153 Query 61 KEDLK--------FPRGQGV----PINTNSSPDDQIGYYRRAT--RRIRGGDGKMKDLSP 106 + P+GQ P N + G R R G + Sbjct 154 DRRPQGQGSYGDRRPQGQNSGDRRPYNGDRPQGQNSGDRRPYNGDRPQGQNSGDRRP--- 210 Query 107 RWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTP--------KDHIGTRNPANNAAIV 158 Y G P+ YG + P + + G R P + Sbjct 211 -----YNGDRPQGQGNYGDRRPQ----GQNSGDRRPYNGDRPQGQGNYGDRRPQGQGSYG 261 Query 159 LQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAA 218 + P P+G G R S R + +G+ R G G Sbjct 262 DRRPNSGDRPQGQGNYGDRRPQGQGSYGDRRPQGQGSYGDRPQGQGSYGDRPQGQGSYGD 321 Query 219 LALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRG 278 + G + + + R + +G R Sbjct 322 RRPQGQGSYGDRRPQGQGSYGDRPQGQGSYGDRRPQGQGSYGDRPQGQGN-----YGDRR 376 Query 279 PEQTQGNFGDQELIRQGT 296 P QG++GD+ QG+ Sbjct 377 PGG-QGSYGDRRPQGQGS 393 >sp|Q9XIN7|NAC40_ARATH NAC domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=NTL8 PE=1 SV=1 Length=335 Score = 40.2 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 38/192 (20%), Positives = 67/192 (35%), Gaps = 21/192 (11%) Query 67 PRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGAN 126 RG+ P + S Q+GY++ + G + R +++G P G Sbjct 76 ARGRKYPHGSQSRRATQLGYWKATGKERSVKSGNQVVGTKRTLVFHIGRAPR-----GER 130 Query 127 KDGIIWVATE----GALNTPKDHIGT---RNPANNAAIVLQLPQGTTLPKGFYAEGSRGG 179 + W+ E GA P+D + R A+ A Q + + Y G RGG Sbjct 131 TE---WIMHEYCIHGA---PQDALVVCRLRKNADFRASSTQKMEDGVVQDDGYV-GQRGG 183 Query 180 SQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQ 239 + +S S + N S + + D A +L D + +L+ + Q Sbjct 184 LEKEDKSYYESEHQIPNGDIAESSNVVEDQADTD--DDCYAEILNDDIIKLDEEALKASQ 241 Query 240 QQQGQTVTKKSA 251 + T + Sbjct 242 AFRPTNPTHQET 253 >sp|O61345|PENG_DROME Protein penguin OS=Drosophila melanogaster OX=7227 GN=peng PE=2 SV=1 Length=737 Score = 39.8 bits (91), Expect = 0.043, Method: Composition-based stats. Identities = 27/163 (17%), Positives = 47/163 (29%), Gaps = 18/163 (11%) Query 135 TEGALNTPKDHIGTRNPANNAAIVLQ--LPQGTTLPKGFYAEGSRGGSQASSRSSSRSRN 192 G P G R + + G K F G G + ++ + Sbjct 29 ANGQKFKPGGAGGARKFDKFGGGAGKSFVKPGAGGAKKFDKSGPGGFKKFDKSGATGDKR 88 Query 193 SSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 N G T P A ++ + + S K + + A Sbjct 89 LGGNKFRGKP-QTQPQAPAEGEKQD-WNKFKKEKKDLKLKRKSAKDTYEISK-----EAN 141 Query 253 EASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGD--QELIR 293 + +K R +RT K V Q + N GD ++++ Sbjct 142 QIHEKLRCRRTENKDKLVEQIY-------KVLNVGDTISKVVK 177 >sp|Q9NBL2|MSL3_DROVI Protein male-specific lethal-3 OS=Drosophila virilis OX=7244 GN=msl-3 PE=3 SV=1 Length=543 Score = 39.4 bits (90), Expect = 0.052, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 14/115 (12%) Query 148 TRNPANNA-AIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTS 206 +P + I L T P+ + S+ S +RSR+ S N + +S G Sbjct 148 VEDPTADPLDISLAHLPATPKPELPAQQKRGARSRDGS--GNRSRDGSGNRSRDNSSGRK 205 Query 207 PARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQK 261 R GGD + + Q K + ++K + Sbjct 206 KQRDKSKGGD-----------KNDDGERRSARSQFSLHVSPKDTHTTDAEKRIHQ 249 >sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / NIES-2087 / MED4) OX=59919 GN=infB PE=3 SV=1 Length=1169 Score = 39.0 bits (89), Expect = 0.081, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 74/259 (29%), Gaps = 25/259 (10%) Query 5 GPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDL 64 G QN++ P GGP N+ G + R QG PN Sbjct 324 GGQNRQGVPNREGGGPYRQGSPNRPGTPN--RPGTPYRQGAPN---------------RP 366 Query 65 KFPRGQGVPINTNSSPDDQIGYYRRATRRIRGG-DGKMKDLSPRWYFYYLGTGPEAGLPY 123 QGVP P Q G R R G G K ++P T A Sbjct 367 GGQNRQGVPNREGGGPYRQ-GSPNRPGTPYRQGASGIRKPVAPNELMQLQKT--NASNKE 423 Query 124 GANKDGIIWVATEGA--LNTPKDHIGTRNPANNAAIVLQ-LPQGTTLPKGFYAEGSRGGS 180 N + EGA + +P+ A + T P G Sbjct 424 KPNISNVNKQKIEGANQKTKAPNSRLNTSPSPTAKKPARSFASNTKKP-GRTDWDDSAKL 482 Query 181 QASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 240 +A + + + + + + +G ++ L R + +S+ + Sbjct 483 EALRNKNPQKQRQKVHIIGENDDSLTSETSGYSGEKVSILSASLARPKKEKSEEIKSQKP 542 Query 241 QQGQTVTKKSAAEASKKPR 259 + KK +K R Sbjct 543 SKQFKKKKKETTRQRQKRR 561 >sp|P17029|ZKSC1_HUMAN Zinc finger protein with KRAB and SCAN domains 1 OS=Homo sapiens OX=9606 GN=ZKSCAN1 PE=1 SV=3 Length=563 Score = 38.6 bits (88), Expect = 0.11, Method: Composition-based stats. Identities = 21/141 (15%), Positives = 43/141 (30%), Gaps = 13/141 (9%) Query 172 YAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLE 231 G + ++ + +R N G + + + + + Sbjct 239 EEWGCQNLARRNLSRDNRQENYGSAFPQGGEN-RNENEESTSKAETSEDSASRGETTGRS 297 Query 232 SKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK--AYNVTQAFGRRGPEQT------- 282 K G+ + Q+G+T ++ K ++KR + + G RGP + Sbjct 298 QKEFGEKRDQEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRS 357 Query 283 ---QGNFGDQELIRQGTDYKH 300 NF E + GT Sbjct 358 FSLSSNFTTPEEVPTGTKSHR 378 >sp|Q28FY7|DBF4A_XENTR Protein DBF4 homolog A OS=Xenopus tropicalis OX=8364 GN=dbf4 PE=2 SV=1 Length=663 Score = 37.1 bits (84), Expect = 0.31, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 11/142 (8%) Query 136 EGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSR 195 EG L+ ++ T L+ P+ G S + R +S + Sbjct 53 EGFLSKEISYLITSKKEAKCVKTLKYVCSVPSPEPAQNTGESSTSPGNRRLPQEGNSSKK 112 Query 196 NSTPGSSRGTSPARMAGNGGDAALALLLLDR--------LNQLESKMSGKGQQQQGQTVT 247 N SRG S + A + +L L+ E+K + ++ Q V Sbjct 113 NEKSLVSRGKSLVKKAIKEQEILPKNSILSNALNWGVKILHVEEAKRYIEKKKSSLQQVK 172 Query 248 KKS---AAEASKKPRQKRTATK 266 K +E+ R+K K Sbjct 173 KSQPVVKSESKHPARRKVKPQK 194 >sp|A8PKH2|EIF3A_BRUMA Eukaryotic translation initiation factor 3 subunit A OS=Brugia malayi OX=6279 GN=Bm1_29045 PE=3 SV=1 Length=1096 Score = 37.1 bits (84), Expect = 0.36, Method: Composition-based stats. Identities = 20/108 (19%), Positives = 34/108 (31%), Gaps = 11/108 (10%) Query 117 PEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQL-----PQGTTLPKGF 171 P P+ G+I VA + A ++ + T P +L P G Sbjct 990 PADAGPWRR---GMI-VARDQADSSQRTSAAT--PTTQPWRPSRLRQADGAPVNGAPSGR 1043 Query 172 YAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAAL 219 EGS + + + + + + S RG S + D Sbjct 1044 ILEGSGSNEPSIGKWNRSIQRTGDSHGAQSFRGISQHQQRRGAADDDR 1091 >sp|Q09779|THO2_SCHPO THO complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tho2 PE=1 SV=3 Length=1628 Score = 36.3 bits (82), Expect = 0.64, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 78/261 (30%), Gaps = 37/261 (14%) Query 6 PQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLK 65 P+ R A R D S+ +R + + + N ++++H + + + Sbjct 1395 PEGNRRALRTRTPTNEDIQRSDSKLREDQSRDRTPQSRSFTNENNDNLRSVSRHTRREPQ 1454 Query 66 FPRGQGVPINTNSS---PDDQIGYYRR---ATRRIRGGDGKMKDLSPRWYFYYLGTGPEA 119 + N N+ + +R+ R R + ++S + Sbjct 1455 QAQ------NLNARREHESQKSDRWRQNGNVNRNPRVSNNNSTNVSRE---------RSS 1499 Query 120 GLPYGANKDGIIWVATEGALNTPKDHI-GTRNPANNAAIVLQLPQGTTLPKGFYAEGSRG 178 + + D TEG + I G N N AI A S G Sbjct 1500 EANHRTSNDNKRDEVTEGKDKNKRQDISGESNSRQNNAIS-------------RAGRSNG 1546 Query 179 GSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKG 238 ++ + + R S+ ++ R + + + + Sbjct 1547 SNRGNDSRDADGRRSTHYASNKRPRSSDSQSPSNLREEDERENSRRRARQDDRRDRDSRQ 1606 Query 239 QQQQGQTVTKKSAAEASKKPR 259 Q+ + + T +SA +K R Sbjct 1607 QRDRPRDRTSRSAR--EEKRR 1625 >sp|A2C4P1|IF2_PROM1 Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=infB PE=3 SV=1 Length=1183 Score = 36.3 bits (82), Expect = 0.71, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 2/105 (2%) Query 164 GTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMA--GNGGDAALAL 221 GT P +G G A+ + ++R N R SP R G +L Sbjct 338 GTGRPGSQNRQGPNRGGVANRTTQGQNRPGGNNRAGAPVRSGSPNRGGIQNRPGVPTRSL 397 Query 222 LLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK 266 +R N SG + + + +A Q++T + Sbjct 398 GGPNRSNNRPGVPSGMRKPVAPSELMQLQKPQARPNAPQRKTDSP 442 >sp|A2BT70|IF2_PROMS Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain AS9601) OX=146891 GN=infB PE=3 SV=1 Length=1126 Score = 36.0 bits (81), Expect = 0.87, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 39/126 (31%), Gaps = 2/126 (2%) Query 168 PKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRL 227 P GS +R S + N+ PGS + L L Sbjct 317 PSDQGRPGSFNRQGNPNRPGSPNGPGMPNNRPGSKFNGQNSSGIRKPVSPNELLQLQKNN 376 Query 228 NQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFG 287 N + K+ K +Q V K+ A + +P T + + F + + ++ Sbjct 377 NSEKDKIGIKNNSKQNIEVPKQKAKAPNNRP--NATPSSKKPPHRTFSNSSKKPGKTDWD 434 Query 288 DQELIR 293 D + Sbjct 435 DSAKLE 440 >sp|Q5R670|ZKSC1_PONAB Zinc finger protein with KRAB and SCAN domains 1 OS=Pongo abelii OX=9601 GN=ZKSCAN1 PE=2 SV=1 Length=563 Score = 35.2 bits (79), Expect = 1.2, Method: Composition-based stats. Identities = 21/141 (15%), Positives = 43/141 (30%), Gaps = 13/141 (9%) Query 172 YAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLE 231 G + ++ + ++ N G + + + + A Sbjct 239 EEWGCQNLARRNLSRDNKQENYGSAFPQGGEN-RNENEESTSKAETAEDSASHGETAGRF 297 Query 232 SKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK--AYNVTQAFGRRGPEQT------- 282 K G+ + Q+G+T ++ K ++KR + + G RGP + Sbjct 298 QKEFGEKRDQEGKTGERQQKNPEEKTGKEKRDSGPATGKDKKTITGERGPREKGKGLGRS 357 Query 283 ---QGNFGDQELIRQGTDYKH 300 NF E + GT Sbjct 358 FSLSSNFTTPEEVPTGTKSHR 378 >sp|P12348|PER_DROPS Period circadian protein OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=per PE=3 SV=3 Length=1271 Score = 35.2 bits (79), Expect = 1.5, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 4/119 (3%) Query 134 ATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNS 193 GA N+ D+ G N + + T P AE SR +SR+ + + Sbjct 763 GNSGADNSAADNFGADNSGPDNSGADNSGPDNTGPDNSGAENSRAE---NSRADNSRPDH 819 Query 194 SRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAA 252 R G+S P + + A + S GQ + T S Sbjct 820 PRPDISGASNSR-PDKTGPDKSGAENSASGSGSGTSGNEGPSSGGQDTRTTAGTPDSPP 877 >sp|Q46J13|IF2_PROMT Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain NATL2A) OX=59920 GN=infB PE=3 SV=1 Length=1183 Score = 35.2 bits (79), Expect = 1.5, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 2/105 (2%) Query 164 GTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMA--GNGGDAALAL 221 GT P +G G A+ + ++R + N R SP R G +L Sbjct 338 GTGRPGSPNRQGPNRGGVANRTTQGQNRPGANNRAGAPVRSGSPNRGGMQNRPGVPTRSL 397 Query 222 LLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK 266 +R N SG + + + +A Q++T + Sbjct 398 GGPNRSNNRPGVPSGMRKPVAPSELMQLQKPQARPNAPQRKTDSP 442 >sp|O35893|SP100_MUSCR Nuclear autoantigen Sp-100 OS=Mus caroli OX=10089 GN=Sp100 PE=2 SV=2 Length=482 Score = 34.4 bits (77), Expect = 1.8, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 16/161 (10%) Query 133 VATEGALNTPKDHIGTRNPAN--NAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRS 190 V E + + + TR N + V++L G + ++E + + + SR+ Sbjct 242 VKKENSSFSLAGNQQTRARTNQNEDSEVIELSSGDSDDGENFSEATTTIPSQPAPAYSRT 301 Query 191 RNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKS 250 + R G + T + + +RL + + +T Sbjct 302 PPTLRTDRRGDTSDTESSIIIRRRKRTGRKKR--ERLGSYLIRNIKIPMKTSWKTAVLAR 359 Query 251 AAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQEL 291 +A S + R+KR G R P + +FG EL Sbjct 360 SANTSSQRRRKR------------GPRIPREENADFGGAEL 388 >sp|Q5UP83|YL004_MIMIV Putative KilA-N domain-containing protein L4 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_L4 PE=4 SV=1 Length=454 Score = 34.4 bits (77), Expect = 1.9, Method: Composition-based stats. Identities = 14/83 (17%), Positives = 28/83 (34%), Gaps = 3/83 (4%) Query 171 FYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQL 230 Y E S ++ SR+ S ++ SR+ + + + L + Sbjct 14 RYIEDSDDETRGRSRNRSIEKSRSRSLDKSQKKSRDKSLTRSRSKSPEKSKSRSKSLTRS 73 Query 231 ESKMSGK---GQQQQGQTVTKKS 250 SK K G ++ + K + Sbjct 74 RSKSPKKCITGNRKNSKHTKKDN 96 >sp|Q96A59|MALD3_HUMAN MARVEL domain-containing protein 3 OS=Homo sapiens OX=9606 GN=MARVELD3 PE=2 SV=3 Length=401 Score = 34.4 bits (77), Expect = 2.0, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 21/87 (24%), Gaps = 0/87 (0%) Query 177 RGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSG 236 R + R R S + P R G+ + G Sbjct 29 RTHDRPRDRPGDPRRKRSSDGNRRRDGDRDPERDQERDGNRDRNRDRERERERERDPDRG 88 Query 237 KGQQQQGQTVTKKSAAEASKKPRQKRT 263 + + +KPRQ RT Sbjct 89 PRRDTHRDAGPRAGEHGVWEKPRQSRT 115 >sp|Q6NY19|KANK3_HUMAN KN motif and ankyrin repeat domain-containing protein 3 OS=Homo sapiens OX=9606 GN=KANK3 PE=1 SV=2 Length=821 Score = 34.4 bits (77), Expect = 2.4, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 13/144 (9%) Query 147 GTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTS 206 G R+P++ ++ L Y E G A + R PG + S Sbjct 26 GARSPSSPYSVETPYGFHLDLDFLKYIEELERGPAARRAPGPPTSRRPRAPRPGLAGARS 85 Query 207 PA---RMAGNGGDAALALLLL---DRLNQLESKMSGKGQQQQGQT--VTKKSAAEASKKP 258 P D A +L L +S + + + ++++ Sbjct 86 PGAWTSSESLASDDGGAPGILSQGAPSGLLMQPLSPRAPVRNPRVEHTLRETSRRLELAQ 145 Query 259 RQKRTATKAYNVTQAFGRRGPEQT 282 +R + V R P + Sbjct 146 THERAPSPGRGV-----PRSPRGS 164 >sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog OS=Mus musculus OX=10090 GN=Ctr9 PE=1 SV=2 Length=1173 Score = 34.4 bits (77), Expect = 2.4, Method: Composition-based stats. Identities = 15/116 (13%), Positives = 32/116 (28%), Gaps = 25/116 (22%) Query 174 EGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESK 233 EG S + S R + + + AG+ + E Sbjct 1031 EGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQ-------ESDEDS 1083 Query 234 MSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQ 289 S + +++ ++ +++S E+ + R P N D Sbjct 1084 DSDQPSRKRRRSGSEQSDNESVQ------------------SGRSPSGASENENDS 1121 >sp|A2BYM0|IF2_PROM5 Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain MIT 9515) OX=167542 GN=infB PE=3 SV=1 Length=1161 Score = 34.0 bits (76), Expect = 3.1, Method: Composition-based stats. Identities = 24/153 (16%), Positives = 46/153 (30%), Gaps = 20/153 (13%) Query 135 TEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGF-YAEGSRGGSQ--ASSRSSSRSR 191 +G N P + N + G +G G G ++ A +R S R Sbjct 307 RQGVSNRPGGGQNRQGVPNRPGSPYR--PGNPNRQGMSNRPGVGGQNRQGAPNRQGSPYR 364 Query 192 NSSRNSTPGSSRG----TSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVT 247 N G+ R S ++ + + L QL+ + ++ Sbjct 365 QGDPNRQGGNYRQGDLNRSGSKFNNQNPSGIRKPVAPNELMQLQKTNASDKEKLNRSNFE 424 Query 248 KKSAAEASKK-----------PRQKRTATKAYN 269 K+ +K P K+T +++ Sbjct 425 KQKVEPPKQKAKAPNSRLNASPTAKKTPHRSFT 457 >sp|Q3AZB7|IF2_SYNS9 Translation initiation factor IF-2 OS=Synechococcus sp. (strain CC9902) OX=316279 GN=infB PE=3 SV=1 Length=1176 Score = 33.6 bits (75), Expect = 4.4, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 67/247 (27%), Gaps = 12/247 (5%) Query 6 PQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQ------- 58 P R PR Q + RP P A T Sbjct 260 PAPSRPTPRPAAAPSRPGAPQGQKPQIVSRAGAPPRPGTPPRVGAPTKTGTPARPTPRPE 319 Query 59 -HGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGP 117 GK + G G P + + G R R G +G Sbjct 320 LVGKPVPRRTGGVGAPQRPGTGVPQRQGGPARPGAPTRTGKPGAPTRPGGNTLELVGKPI 379 Query 118 EAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSR 177 + + G GA P G R P + +QL + + P Sbjct 380 RRDGSSASGRPGA--PTRPGAPTRPGMPGGMRKPVAPGEL-MQLQKPISRPAAPAPRRPD 436 Query 178 GGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGK 237 ++ + + + + +R + P + R R GG D +LE+ S Sbjct 437 APNRPTEAAGTATPPVARPTAPSAPR-RPGFRPGAPGGQRRPGRPDWDDSAKLEALRSRS 495 Query 238 GQQQQGQ 244 Q+Q+ + Sbjct 496 PQKQRQK 502 >sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster OX=7227 GN=ncm PE=1 SV=3 Length=1330 Score = 33.3 bits (74), Expect = 6.0, Method: Composition-based stats. Identities = 19/114 (17%), Positives = 38/114 (33%), Gaps = 4/114 (4%) Query 149 RNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPA 208 R + + + + P+ E SR + R SRN + S RG Sbjct 1198 RKRDRSRSYERPTIRENSAPREKRMESSRSEKDSR-RGDRSSRNERSDRGERSDRGERSD 1256 Query 209 RMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKR 262 R G D +R ++ E + ++ + + + + + +KR Sbjct 1257 R--GERSDRGERSDRGERSDRGERSD-REKERSRAKERERDRDRDLKGQRERKR 1307 >sp|B1MZH4|IF2_LEUCK Translation initiation factor IF-2 OS=Leuconostoc citreum (strain KM20) OX=349519 GN=infB PE=3 SV=1 Length=840 Score = 32.9 bits (73), Expect = 6.3, Method: Composition-based stats. Identities = 26/164 (16%), Positives = 55/164 (34%), Gaps = 15/164 (9%) Query 135 TEGALNTPKDHIGTRNPANNAAIVLQLPQ-------GTTLPKGFYAEGSRGGSQASSRSS 187 A TP+ + R + + G + ++ G + + R Sbjct 41 NSSAGTTPRSNKPARQGQSQGQGQNRHTNSSRSNTQGGNASRPNQSKSQGQGGRNNQRPG 100 Query 188 SRSRNSS-----RNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQ 242 SR++ S R S++ D +L + + + ++ + ++ Sbjct 101 SRTQASEGRPMIREKKNWSTKPREGQIDYSKKTDNSLKQYVSENEKRKQA--AAAKTTKK 158 Query 243 GQTVTKKSAAEASK-KPRQKRTATKAYNVTQAFGRRGPEQTQGN 285 +KK+A + ++ KP+ T T A G+ G GN Sbjct 159 PAEQSKKAAEKPAQTKPKTAETKTTATTTQSGTGKFGGALASGN 202 >sp|Q9C0D6|FHDC1_HUMAN FH2 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=FHDC1 PE=1 SV=2 Length=1143 Score = 32.9 bits (73), Expect = 6.7, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 84/256 (33%), Gaps = 22/256 (9%) Query 6 PQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTAL-----TQHG 60 P+N+ P +D + + E + +R + P+ S + + +Q Sbjct 762 PENKDPRPLFCISDTTDCSLTLDCSEGTDSRPRGGDPEEGGEGDGSMSSGVGEMGDSQVS 821 Query 61 KEDLKFPRGQG-VPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEA 119 P G+ P++ +S P + G R + K R G Sbjct 822 SNPTSSPPGEAPAPVSVDSEPSCKGG-----LPRDKPTKRKDVVAPKR--------GSLK 868 Query 120 GLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGG 179 GA+K G ++GA+ + T + + V+ + + + E S G Sbjct 869 EASPGASKPGSA-RRSQGAVAKSVRTL-TASENESMRKVMPITKSSRGAGWRRPELSSRG 926 Query 180 SQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQ 239 + SS+ + S +NS +S G R+ ++ D Q K Sbjct 927 PSQNPPSSTDTVWSRQNSVRRASTGAEEQRLPRGSSGSSSTRPGRDVPLQPRG-SFKKPS 985 Query 240 QQQGQTVTKKSAAEAS 255 + + + ++ E Sbjct 986 AKPLRNLPRQKPEENK 1001 >sp|Q38W81|IF2_LATSS Translation initiation factor IF-2 OS=Latilactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=infB PE=3 SV=1 Length=937 Score = 32.9 bits (73), Expect = 7.2, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 12/125 (10%) Query 138 ALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNS 197 A P H R PQ G + G + A ++S N+SR + Sbjct 91 ADKKPAQHSNNR------------PQANANRNGQASNGQNRTNNARPNNNSARPNNSRPN 138 Query 198 TPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKK 257 T S R +L + + + QQ++ + +K E + + Sbjct 139 TNSRPNNNSQNRSTSANHPMSLQEQISQANARRQRTQERIQQQREQREADEKKRREQANR 198 Query 258 PRQKR 262 PR R Sbjct 199 PRPTR 203 >sp|Q6P1L5|F117B_HUMAN Protein FAM117B OS=Homo sapiens OX=9606 GN=FAM117B PE=1 SV=2 Length=589 Score = 32.5 bits (72), Expect = 8.5, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 7/127 (6%) Query 157 IVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGD 216 I +P G P S S + R S NS+ S + N G Sbjct 368 IPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADR-GSNNSSRSQSVSPTSFLTISNEGS 426 Query 217 AALALLLLDRLNQLESKMSGKGQQQQGQTVTK-KSAAEASKKPRQKRTATKAYNVTQAFG 275 D L K +G + K ++ + + KR + + F Sbjct 427 EESPCSADDLLVDPRDKENG-----NNSPLPKYATSPKPNNSYMFKREPPEGCERVKVFE 481 Query 276 RRGPEQT 282 P+Q Sbjct 482 ECSPKQL 488 >sp|Q2UB17|ESF2_ASPOR Pre-rRNA-processing protein esf2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=esf2 PE=3 SV=1 Length=335 Score = 32.1 bits (71), Expect = 8.7, Method: Composition-based stats. Identities = 19/113 (17%), Positives = 35/113 (31%), Gaps = 12/113 (11%) Query 174 EGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESK 233 E + G + + S++R S R T + + D L L + + Sbjct 18 EDNDRGYDSEAAEESKARISKRRRTQTQDDESDQSDNDSVASDEDLKLSKSKGKAKKPQQ 77 Query 234 MSGKG---------QQQQGQT---VTKKSAAEASKKPRQKRTATKAYNVTQAF 274 S + Q+ G VT++ + +KP K K + Sbjct 78 RSEEDVISDNDDEQQETSGTQYLDVTEQETKSSKRKPLDKGKPPKKNKTGVVY 130 Lambda K H a alpha 0.318 0.123 0.316 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0376 0.140 1.90 42.6 43.6 Effective search space used: 40990875652 Search has CONVERGED! Database: uniprot_sprot.fasta Posted date: Apr 3, 2024 12:05 PM Number of letters in database: 206,678,396 Number of sequences in database: 571,282 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40