PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= YP_009724393.1 membrane glycoprotein [Severe acute respiratory
syndrome coronavirus 2]
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
sp|P0DTC5|VME1_SARS2 Membrane protein OS=Severe acute respiratory... 452 3e-163
sp|Q3LZX9|VME1_BCHK3 Membrane protein OS=Bat coronavirus HKU3 OX=... 418 9e-150
sp|Q0Q472|VME1_BC279 Membrane protein OS=Bat coronavirus 279/2005... 417 3e-149
sp|P59596|VME1_SARS Membrane protein OS=Severe acute respiratory ... 416 3e-149
sp|Q3I5J2|VME1_BCRP3 Membrane protein OS=Bat coronavirus Rp3/2004... 415 2e-148
sp|A3EXD6|VME1_BCHK5 Membrane protein OS=Bat coronavirus HKU5 OX=... 188 4e-59
sp|Q0Q4E7|VME1_BC133 Membrane protein OS=Bat coronavirus 133/2005... 187 8e-59
sp|A3EXA0|VME1_BCHK4 Membrane protein OS=Bat coronavirus HKU4 OX=... 187 1e-58
sp|A3EXG9|VME1_BCHK9 Membrane protein OS=Bat coronavirus HKU9 OX=... 183 5e-57
sp|K9N7A1|VME1_MERS1 Membrane protein OS=Middle East respiratory ... 179 2e-55
sp|Q8BB24|VME1_CVP67 Membrane protein OS=Porcine hemagglutinating... 174 3e-53
sp|Q8JSP5|VME1_CVPIA Membrane protein OS=Porcine hemagglutinating... 172 1e-52
sp|Q9JEB4|VME1_CVM2 Membrane protein OS=Murine coronavirus (strai... 169 2e-51
sp|P69600|VME1_CVBOK Membrane protein OS=Bovine coronavirus (stra... 168 4e-51
sp|P69599|VME1_CVBLS Membrane protein OS=Bovine coronavirus (stra... 168 4e-51
sp|Q8V433|VME1_CVBLU Membrane protein OS=Bovine coronavirus (stra... 167 6e-51
sp|Q91A23|VME1_CVBEN Membrane protein OS=Bovine coronavirus (stra... 167 1e-50
sp|Q01455|VME1_CVHOC Membrane protein OS=Human coronavirus OC43 O... 163 4e-49
sp|P03415|VME1_CVMA5 Membrane protein OS=Murine coronavirus (stra... 160 4e-48
sp|P08549|VME1_CVMJH Membrane protein OS=Murine coronavirus (stra... 160 6e-48
sp|Q9QAR9|VME1_CVBLY Membrane protein OS=Bovine coronavirus (stra... 160 6e-48
sp|P69705|VME1_CVBQ Membrane protein OS=Bovine coronavirus (strai... 159 2e-47
sp|P69704|VME1_CVBM Membrane protein OS=Bovine coronavirus (strai... 159 2e-47
sp|P69703|VME1_CVBF Membrane protein OS=Bovine coronavirus (strai... 159 2e-47
sp|Q9IKC7|VME1_CVRSD Membrane protein OS=Rat coronavirus (strain ... 155 3e-46
sp|P26021|VME1_CVTKE Membrane protein OS=Turkey enteric coronavir... 155 3e-46
sp|Q9WCD1|VME1_CVRNJ Membrane protein (Fragment) OS=Rat coronavir... 155 6e-46
sp|Q5MQC7|VME1_CVHN1 Membrane protein OS=Human coronavirus HKU1 (... 153 3e-45
sp|Q14EA7|VME1_CVHN2 Membrane protein OS=Human coronavirus HKU1 (... 151 2e-44
sp|Q0ZME4|VME1_CVHN5 Membrane protein OS=Human coronavirus HKU1 (... 150 3e-44
sp|P59771|VME1_PEDV7 Membrane protein OS=Porcine epidemic diarrhe... 129 8e-36
sp|P59770|VME1_PEDVB Membrane protein OS=Porcine epidemic diarrhe... 122 2e-33
sp|Q0Q463|VME1_BC512 Membrane protein OS=Bat coronavirus 512/2005... 120 1e-32
sp|P05136|VME1_IBV6 Membrane protein OS=Avian infectious bronchit... 117 1e-31
sp|P69606|VME1_IBVM Membrane protein OS=Avian infectious bronchit... 117 2e-31
sp|P69607|VME1_IBVH5 Membrane protein OS=Avian infectious bronchi... 117 2e-31
sp|P12649|VME1_IBVK Membrane protein OS=Avian infectious bronchit... 117 3e-31
sp|Q9J3N8|VME1_IBVDE Membrane protein OS=Avian infectious bronchi... 117 3e-31
sp|P69604|VME1_IBVH1 Membrane protein OS=Avian infectious bronchi... 117 3e-31
sp|P69603|VME1_IBVD1 Membrane protein OS=Avian infectious bronchi... 117 3e-31
sp|P69605|VME1_IBV41 Membrane protein OS=Avian infectious bronchi... 117 3e-31
sp|Q6Q1R9|VME1_CVHNL Membrane protein OS=Human coronavirus NL63 O... 115 2e-30
sp|P11222|VME1_IBVB2 Membrane protein OS=Avian infectious bronchi... 113 9e-30
sp|Q910E2|VME1_IBVG Membrane protein OS=Avian infectious bronchit... 113 1e-29
sp|Q91QS9|VME1_IBVBU Membrane protein OS=Avian infectious bronchi... 112 2e-29
sp|P69602|VME1_IBVBC Membrane protein OS=Avian infectious bronchi... 112 2e-29
sp|P69601|VME1_IBVB Membrane protein OS=Avian infectious bronchit... 112 2e-29
sp|P24412|VME1_CVPRM Membrane protein OS=Porcine respiratory coro... 111 8e-29
sp|Q7T6S9|VME1_CVCBG Membrane protein OS=Canine coronavirus (stra... 110 3e-28
sp|P09175|VME1_CVPFS Membrane protein OS=Porcine transmissible ga... 109 4e-28
sp|P33464|VME1_CVPR8 Membrane protein OS=Porcine respiratory coro... 109 5e-28
sp|P04135|VME1_CVPPU Membrane protein OS=Porcine transmissible ga... 109 7e-28
sp|P25878|VME1_FIPV Membrane protein OS=Feline coronavirus (strai... 107 6e-27
sp|P36299|VME1_CVCAI Membrane protein OS=Canine coronavirus (stra... 103 8e-26
sp|P15422|VME1_CVH22 Membrane protein OS=Human coronavirus 229E O... 86.7 2e-19
sp|H6WS94|PDR1_PETHY Pleiotropic drug resistance protein 1 OS=Pet... 33.9 1.2
sp|H6WS93|PDR1_PETAX Pleiotropic drug resistance protein 1 OS=Pet... 33.9 1.2
sp|Q9LRN6|CML22_ARATH Probable calcium-binding protein CML22 OS=A... 30.8 8.3
sp|Q93Y08|AB1K8_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE 8, c... 31.2 8.4
sp|P94438|LNRJ_BACSU Sensor histidine kinase LnrJ OS=Bacillus sub... 31.2 9.0
>sp|P0DTC5|VME1_SARS2 Membrane protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=M PE=1 SV=1
Length=222
Score = 452 bits (1163), Expect = 3e-163, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%), Gaps = 0/222 (0%)
Query 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV
Sbjct 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
Query 61 TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL
Sbjct 61 TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
Query 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK 180
NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK
Sbjct 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK 180
Query 181 LGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
LGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ
Sbjct 181 LGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
>sp|Q3LZX9|VME1_BCHK3 Membrane protein OS=Bat coronavirus HKU3
OX=442736 GN=M PE=3 SV=1
Length=221
Score = 418 bits (1074), Expect = 9e-150, Method: Compositional matrix adjust.
Identities = 202/222 (91%), Positives = 214/222 (96%), Gaps = 1/222 (0%)
Query 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
MAD NGTITVEELK+LLEQWNLVIGF+FL WI LLQFAY+NRNRFLYIIKL+FLWLLWPV
Sbjct 1 MAD-NGTITVEELKQLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPV 59
Query 61 TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
TLACFVLAAVYRINW+TGGIAIAMAC+VGLMWLSYF+ASFRLFARTRSMWSFNPETNILL
Sbjct 60 TLACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILL 119
Query 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK 180
NVPL GTILTRPL+ESELVIGAVI+RGHLR+AGH LGRCDIKDLPKEITVATSRTLSYYK
Sbjct 120 NVPLRGTILTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYK 179
Query 181 LGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
LGASQRV DSGFAAY+RYRIGNYKLNTDHS S+DNIALLVQ
Sbjct 180 LGASQRVGTDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|Q0Q472|VME1_BC279 Membrane protein OS=Bat coronavirus 279/2005
OX=389167 GN=M PE=3 SV=1
Length=221
Score = 417 bits (1071), Expect = 3e-149, Method: Compositional matrix adjust.
Identities = 202/222 (91%), Positives = 213/222 (96%), Gaps = 1/222 (0%)
Query 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
M D NGTITVEELK+LLEQWNLVIGF+FL WI LLQFAY+NRNRFLYIIKL+FLWLLWPV
Sbjct 1 MTD-NGTITVEELKQLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPV 59
Query 61 TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
TLACFVLAAVYRINW+TGGIAIAMAC+VGLMWLSYF+ASFRLFARTRSMWSFNPETNILL
Sbjct 60 TLACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILL 119
Query 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK 180
NVPL GTILTRPLLESELVIGAVI+RGHLR+AGH LGRCDIKDLPKEITVATSRTLSYYK
Sbjct 120 NVPLRGTILTRPLLESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYK 179
Query 181 LGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
LGASQRV DSGFAAY+RYRIGNYKLNTDHS S+DNIALLVQ
Sbjct 180 LGASQRVGNDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|P59596|VME1_SARS Membrane protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=M PE=1 SV=1
Length=221
Score = 416 bits (1070), Expect = 3e-149, Method: Compositional matrix adjust.
Identities = 201/222 (91%), Positives = 214/222 (96%), Gaps = 1/222 (0%)
Query 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
MAD NGTITVEELK+LLEQWNLVIGFLFL WI LLQFAY+NRNRFLYIIKL+FLWLLWPV
Sbjct 1 MAD-NGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPV 59
Query 61 TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
TLACFVLAAVYRINW+TGGIAIAMAC+VGLMWLSYF+ASFRLFARTRSMWSFNPETNILL
Sbjct 60 TLACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILL 119
Query 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK 180
NVPL GTI+TRPL+ESELVIGAVI+RGHLR+AGH LGRCDIKDLPKEITVATSRTLSYYK
Sbjct 120 NVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYK 179
Query 181 LGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
LGASQRV DSGFAAY+RYRIGNYKLNTDH+ S+DNIALLVQ
Sbjct 180 LGASQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
>sp|Q3I5J2|VME1_BCRP3 Membrane protein OS=Bat coronavirus Rp3/2004
OX=349344 GN=M PE=3 SV=1
Length=221
Score = 415 bits (1066), Expect = 2e-148, Method: Compositional matrix adjust.
Identities = 198/219 (90%), Positives = 211/219 (96%), Gaps = 0/219 (0%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
NGTI+VEELK+LLEQWNLVIGF+FL WI LLQFAY+NRNRFLYIIKL+FLWLLWPVTLA
Sbjct 3 ENGTISVEELKRLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
Query 64 CFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVP 123
CFVLAAVYRINW+TGGIAIAMAC+VGLMWLSYF+ASFRLFARTRSMWSFNPETNILLNVP
Sbjct 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
Query 124 LHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGA 183
L GTILTRPL+ESELVIGAVI+RGHLR+AGH LGRCDIKDLPKEITVATSRTLSYYKLGA
Sbjct 123 LRGTILTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLGA 182
Query 184 SQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
SQRV DSGFAAY+RYRIGNYKLNTDHS S+DNIALLVQ
Sbjct 183 SQRVGTDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|A3EXD6|VME1_BCHK5 Membrane protein OS=Bat coronavirus HKU5
OX=694008 GN=M PE=1 SV=1
Length=220
Score = 188 bits (477), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 93/208 (45%), Positives = 130/208 (63%), Gaps = 6/208 (3%)
Query 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
MA SN T++ +E+ +L++ WN +FL +LQ+ Y +R+ F+Y+IK+ LWLLWP
Sbjct 1 MASSNVTLSNDEVLRLVKDWNFTWSVVFLLITIVLQYGYPSRSMFVYVIKMFVLWLLWPA 60
Query 61 TLACFVLAAVYRIN---WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETN 117
++A + AVY I+ I GI A +C MW+SYF+ S RLF RT S WSFNPE+N
Sbjct 61 SMALSIFCAVYPIDLASQIISGILAATSCA---MWISYFVQSIRLFMRTGSWWSFNPESN 117
Query 118 ILLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLS 177
LLNVP+ GT + RPL+E + AV+ G+L++AG H G CD + LP E+TVA L
Sbjct 118 CLLNVPIGGTTVVRPLVEDSTSVTAVVTDGYLKMAGMHFGACDFQRLPSEVTVAKPNVLI 177
Query 178 YYKLGASQRVAGDSGFAAYSRYRIGNYK 205
K+ Q +SG A Y RY+ GNY+
Sbjct 178 ALKMIKRQAYGTNSGVAIYHRYKAGNYR 205
>sp|Q0Q4E7|VME1_BC133 Membrane protein OS=Bat coronavirus 133/2005
OX=389230 GN=M PE=3 SV=1
Length=219
Score = 187 bits (476), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 88/206 (43%), Positives = 129/206 (63%), Gaps = 0/206 (0%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
SNG++T +E+ +++ WN +FL +LQ+ Y +R+ +Y+ K+ LWLLWP ++
Sbjct 2 SSNGSLTKDEVVNIIKDWNFSWSIIFLLITIVLQYGYPSRSMMVYVFKMFILWLLWPASM 61
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A + +A+Y I+ + I+ +A + +MWL+YF+ S RLF RT S WSFNPE+N LLNV
Sbjct 62 ALSIFSAIYPISLASQIISGILAAICAVMWLAYFVQSIRLFMRTGSWWSFNPESNCLLNV 121
Query 123 PLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLG 182
P+ GT + RPL+E + AV+ GHL++AG H GRCD LP EITVA L K+
Sbjct 122 PIGGTTVVRPLVEDSTSVTAVVNDGHLKMAGMHFGRCDYDRLPMEITVAKPSVLIALKMV 181
Query 183 ASQRVAGDSGFAAYSRYRIGNYKLNT 208
Q +SG A + RY+ GNY+ T
Sbjct 182 KRQSYGTNSGVAIFHRYKAGNYRRPT 207
>sp|A3EXA0|VME1_BCHK4 Membrane protein OS=Bat coronavirus HKU4
OX=694007 GN=M PE=3 SV=1
Length=219
Score = 187 bits (475), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 88/206 (43%), Positives = 129/206 (63%), Gaps = 0/206 (0%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
SNG++T +E+ +++ WN +FL +LQ+ Y +R+ +Y+ K+ LWLLWP ++
Sbjct 2 SSNGSLTKDEVVNIIKDWNFSWSIIFLLITIVLQYGYPSRSMMVYVFKMFILWLLWPASM 61
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A + +A+Y I+ + I+ +A + +MWL+YF+ S RLF RT S WSFNPE+N LLNV
Sbjct 62 ALSIFSAIYPISLSSQIISGILAAICAVMWLAYFVQSIRLFMRTGSWWSFNPESNCLLNV 121
Query 123 PLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLG 182
P+ GT + RPL+E + AV+ GHL++AG H GRCD LP EITVA L K+
Sbjct 122 PIGGTTVVRPLVEDSTSVTAVVNDGHLKMAGMHFGRCDYDRLPMEITVAKPSVLIALKMV 181
Query 183 ASQRVAGDSGFAAYSRYRIGNYKLNT 208
Q +SG A + RY+ GNY+ T
Sbjct 182 KRQSYGTNSGVAIFHRYKAGNYRRPT 207
>sp|A3EXG9|VME1_BCHK9 Membrane protein OS=Bat coronavirus HKU9
OX=694006 GN=M PE=3 SV=1
Length=222
Score = 183 bits (464), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 135/219 (62%), Gaps = 1/219 (0%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
+ T+ E+ L+ WN + + L LLQ+ Y +R + +++IK+ LWLLWP+++
Sbjct 4 NCTNTVPRPEVIAALKDWNFAVSVILLFITVLLQWGYPSRCKPIWVIKMFILWLLWPLSI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V AA++ IN + G AIA AC+ G+MWLSYFI+SFRL RT S WSF PET++L+N+
Sbjct 64 AAAVFAAIHPINSVAFGFAIAFACISGIMWLSYFISSFRLLCRTGSAWSFMPETDMLINI 123
Query 123 PLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLG 182
PL G +TRP++ + +I+RG LR G LGRCD D+P +T+A L +YK
Sbjct 124 PLLGRTVTRPIISDSPAVQFLIIRGELRFDGFTLGRCDPGDMPDIVTIARPNALHWYKRA 183
Query 183 ASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLV 221
++ + S Y +Y++GN+++ + + D +A+ V
Sbjct 184 LTRNMYTRSAILVYIKYKVGNHRVQ-NTTEDGDRLAMFV 221
>sp|K9N7A1|VME1_MERS1 Membrane protein OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=M PE=3 SV=1
Length=219
Score = 179 bits (453), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 87/203 (43%), Positives = 124/203 (61%), Gaps = 1/203 (0%)
Query 4 SNGT-ITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
SN T +T ++ +++ WN +FL +LQ+ Y +R+ +Y+ K+ LWLLWP ++
Sbjct 2 SNMTQLTEAQIIAIIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSM 61
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A + +AVY I+ + I+ +A + +MW+SYF+ S RLF RT S WSFNPETN LLNV
Sbjct 62 ALSIFSAVYPIDLASQIISGIVAAVSAMMWISYFVQSIRLFMRTGSWWSFNPETNCLLNV 121
Query 123 PLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLG 182
P GT + RPL+E + AV+ GHL++AG H G CD LP E+TVA L K+
Sbjct 122 PFGGTTVVRPLVEDSTSVTAVVTNGHLKMAGMHFGACDYDRLPNEVTVAKPNVLIALKMV 181
Query 183 ASQRVAGDSGFAAYSRYRIGNYK 205
Q +SG A Y RY+ GNY+
Sbjct 182 KRQSYGTNSGVAIYHRYKAGNYR 204
>sp|Q8BB24|VME1_CVP67 Membrane protein OS=Porcine hemagglutinating
encephalomyelitis virus (strain 67N) OX=230237 GN=M PE=3
SV=1
Length=230
Score = 174 bits (440), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 87/213 (41%), Positives = 127/213 (60%), Gaps = 1/213 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T +E K L++WN +G + L +LQF Y +R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 14 TADEAIKFLKEWNFSLGIIVLFITIILQFGYTSRSMFVYVIKMVILWLMWPLTIILTIFN 73
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G +
Sbjct 74 CVYALNNVYLGFSIVFTIVAIIMWVVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGRM 133
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A I+RGHL I G LG + DLP +TVA L YK G R+
Sbjct 134 YVRPIIEDYHTLTATIIRGHLYIQGIKLGTGYSLSDLPAYVTVAKVTHLCTYKRGFLDRI 193
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
SGFA Y + ++GNY+L + H S + ALL
Sbjct 194 GDTSGFAVYVKSKVGNYRLPSTHKGSGMDTALL 226
>sp|Q8JSP5|VME1_CVPIA Membrane protein OS=Porcine hemagglutinating
encephalomyelitis virus (strain IAF-404) OX=230236 GN=M
PE=3 SV=1
Length=230
Score = 172 bits (435), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 85/213 (40%), Positives = 126/213 (59%), Gaps = 1/213 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T +E K L++WN +G + L +LQF Y +R+ F+Y++K++ LW +WP+T+ +
Sbjct 14 TADEAIKFLKEWNFSLGIIVLFITIILQFGYTSRSMFVYVVKMVILWFMWPLTIILTIFN 73
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G +
Sbjct 74 CVYALNNVYLGFSIVFTIVAIIMWVVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGRM 133
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A I+RGHL I G LG + DLP +TVA L YK G R+
Sbjct 134 YVRPIIEDYHTLTATIIRGHLYIQGIKLGTGYSLSDLPAYVTVAKVTHLCTYKRGFLDRI 193
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
SGFA Y + ++GNY+L + H S + ALL
Sbjct 194 GDTSGFAVYVKSKVGNYRLPSTHKGSGMDTALL 226
>sp|Q9JEB4|VME1_CVM2 Membrane protein OS=Murine coronavirus (strain
2) OX=76344 GN=M PE=1 SV=1
Length=228
Score = 169 bits (427), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 83/209 (40%), Positives = 124/209 (59%), Gaps = 1/209 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T +E + L++WN +G + L +LQF Y +R+ F+Y++K+I LWL+WP+T+ +
Sbjct 15 TADEAIRFLKEWNFSLGIILLFVTIILQFGYTSRSMFVYVVKMILLWLMWPLTIVLCIFN 74
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIIMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCTDMKGTV 134
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A I+RGHL + G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDN 216
G SGFA Y + ++GNY+L ++ S D
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGMDT 223
>sp|P69600|VME1_CVBOK Membrane protein OS=Bovine coronavirus (strain
OK-0514) OX=231432 GN=M PE=3 SV=1
Length=230
Score = 168 bits (426), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69599|VME1_CVBLS Membrane protein OS=Bovine coronavirus (strain
LSU-94LSS-051) OX=233261 GN=M PE=3 SV=1
Length=230
Score = 168 bits (426), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|Q8V433|VME1_CVBLU Membrane protein OS=Bovine coronavirus (strain
98TXSF-110-LUN) OX=233264 GN=M PE=3 SV=1
Length=230
Score = 167 bits (424), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALL 226
>sp|Q91A23|VME1_CVBEN Membrane protein OS=Bovine coronavirus (strain
98TXSF-110-ENT) OX=233262 GN=M PE=3 SV=1
Length=230
Score = 167 bits (423), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMVILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALL 226
>sp|Q01455|VME1_CVHOC Membrane protein OS=Human coronavirus OC43
OX=31631 GN=M PE=1 SV=1
Length=230
Score = 163 bits (413), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 87/213 (41%), Positives = 127/213 (60%), Gaps = 1/213 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 14 TADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIFN 73
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G++I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + GT+
Sbjct 74 CVYALNNVYLGLSIVFTIVAIIMWIVYFVNSIRLFIRTGSFWSFNPETNNLMCIDMKGTM 133
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + I+RGHL I G LG DLP +TVA L YK G R+
Sbjct 134 YVRPIIEDYHTLTVTIIRGHLYIQGIKLGTGYSWADLPAYMTVAKVTHLCTYKRGFLDRI 193
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
+ SGFA Y + ++GNY+L + S + ALL
Sbjct 194 SDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P03415|VME1_CVMA5 Membrane protein OS=Murine coronavirus (strain
A59) OX=11142 GN=M PE=1 SV=1
Length=228
Score = 160 bits (405), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 127/212 (60%), Gaps = 1/212 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T +E + L++WN +G + L +LQF Y +R+ F+Y++K+I LWL+WP+T+ +
Sbjct 15 TADEAVQFLKEWNFSLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 74
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + ++W+ YF+ S RLF RT S WSFNPETN L+ + + GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIVIWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGTV 134
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A I+RGHL + G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIAL 219
G SGFA Y + ++GNY+L ++ S +D L
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTALL 226
>sp|P08549|VME1_CVMJH Membrane protein OS=Murine coronavirus (strain
JHM) OX=11144 GN=M PE=1 SV=1
Length=228
Score = 160 bits (404), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 82/212 (39%), Positives = 126/212 (59%), Gaps = 1/212 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T +E + L++WN +G + L +LQF Y +R+ F+Y++K+I LWL+WP+ + +
Sbjct 15 TADEAVQFLKEWNFSLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLIIVLCMFN 74
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSVVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGTV 134
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A I+RGH + G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHFYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIAL 219
G SGFA Y + ++GNY+L ++ S +D + L
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTVLL 226
>sp|Q9QAR9|VME1_CVBLY Membrane protein OS=Bovine coronavirus (strain
LY-138) OX=11131 GN=M PE=3 SV=1
Length=230
Score = 160 bits (404), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
R+ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 RIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69705|VME1_CVBQ Membrane protein OS=Bovine coronavirus (strain
Quebec) OX=11133 GN=M PE=3 SV=1
Length=230
Score = 159 bits (402), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69704|VME1_CVBM Membrane protein OS=Bovine coronavirus (strain
Mebus) OX=11132 GN=M PE=1 SV=1
Length=230
Score = 159 bits (402), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69703|VME1_CVBF Membrane protein OS=Bovine coronavirus (strain
F15) OX=11129 GN=M PE=3 SV=1
Length=230
Score = 159 bits (402), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|Q9IKC7|VME1_CVRSD Membrane protein OS=Rat coronavirus (strain
681) OX=33740 GN=M PE=3 SV=1
Length=228
Score = 155 bits (393), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 82/212 (39%), Positives = 126/212 (59%), Gaps = 1/212 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T + + L++WN ++G + L +LQF Y +R+ F+Y++K+I LWL+WP+T+ +
Sbjct 15 TADVAVRFLKEWNFLLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 74
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDVKGTV 134
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A +RGHL + G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATNVRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIAL 219
G SGFA Y + ++GNY+L ++ S +D L
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTALL 226
>sp|P26021|VME1_CVTKE Membrane protein OS=Turkey enteric coronavirus
OX=11152 GN=M PE=3 SV=1
Length=230
Score = 155 bits (393), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 125/215 (58%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ +Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMSVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGRC-DIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|Q9WCD1|VME1_CVRNJ Membrane protein (Fragment) OS=Rat coronavirus
(strain NJ) OX=231433 GN=M PE=3 SV=1
Length=222
Score = 155 bits (391), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 82/212 (39%), Positives = 125/212 (59%), Gaps = 1/212 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T + + L++WN ++G + L +LQF Y +R+ F+Y++K+I LWL+WP+T+ +
Sbjct 9 TADVAVRFLKEWNFLLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 68
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + GT+
Sbjct 69 CVYALNNVYLGFSIVFTIVSIVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDVKGTV 128
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A +RGHL + G LG + DLP +TVA L YK +V
Sbjct 129 YVRPIIEDYHTLTATNVRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 188
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIAL 219
G SGFA Y + ++GNY+L ++ S D L
Sbjct 189 DGVSGFAVYVKSKVGNYRLPSNKPSGVDTALL 220
>sp|Q5MQC7|VME1_CVHN1 Membrane protein OS=Human coronavirus HKU1
(isolate N1) OX=443239 GN=M PE=3 SV=1
Length=223
Score = 153 bits (386), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 120/209 (57%), Gaps = 1/209 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T ++ L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 10 TSDQAVTFLKEWNFSLGVILLFITIILQFGYTSRSMFVYLIKMIILWLMWPLTITLTIFN 69
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
Y +N +I + ++W+ YF+ S RLF RT S WSFNPETN L+ + + G +
Sbjct 70 CFYALNNAFLAFSIVFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGKM 129
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A ++RGHL I G LG + DLP +TVA + L YK ++
Sbjct 130 FVRPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLSDLPVYVTVAKVQVLCTYKRAFLDKL 189
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDN 216
+SGFA + + ++GNY+L + S D
Sbjct 190 DVNSGFAVFVKSKVGNYRLPSSKPSGMDT 218
>sp|Q14EA7|VME1_CVHN2 Membrane protein OS=Human coronavirus HKU1
(isolate N2) OX=443240 GN=M PE=3 SV=1
Length=223
Score = 151 bits (381), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 78/206 (38%), Positives = 123/206 (60%), Gaps = 1/206 (0%)
Query 11 EELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAV 70
++ L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 DQAITFLKEWNFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFNCF 71
Query 71 YRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILT 130
Y +N I G++I + ++W+ YF+ S RLF RT S WSFNPETN L+ + + G +
Sbjct 72 YALNNIFLGLSILFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGKMYV 131
Query 131 RPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRVAG 189
RP++E + A ++RGHL I G LG + DLP +TVA + L YK ++
Sbjct 132 RPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKRAFLDKLDV 191
Query 190 DSGFAAYSRYRIGNYKLNTDHSSSSD 215
+SGFA + + ++GNY+L + SS D
Sbjct 192 NSGFAVFVKSKVGNYRLPSSKSSGMD 217
>sp|Q0ZME4|VME1_CVHN5 Membrane protein OS=Human coronavirus HKU1
(isolate N5) OX=443241 GN=M PE=3 SV=1
Length=223
Score = 150 bits (379), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 123/206 (60%), Gaps = 1/206 (0%)
Query 11 EELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAV 70
++ L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 DQAITFLKEWNFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFNCF 71
Query 71 YRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILT 130
Y +N + G++I + ++W+ YF+ S RLF RT S WSFNPETN L+ + + G +
Sbjct 72 YALNNVFLGLSILFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGKMYV 131
Query 131 RPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRVAG 189
RP++E + A ++RGHL I G LG + DLP +TVA + L YK ++
Sbjct 132 RPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKRAFLDKLDV 191
Query 190 DSGFAAYSRYRIGNYKLNTDHSSSSD 215
+SGFA + + ++GNY+L + SS D
Sbjct 192 NSGFAVFVKSKVGNYRLPSSKSSGMD 217
>sp|P59771|VME1_PEDV7 Membrane protein OS=Porcine epidemic diarrhea
virus (strain CV777) OX=229032 GN=M PE=3 SV=1
Length=226
Score = 129 bits (323), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 120/213 (56%), Gaps = 4/213 (2%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
SNG+I V+E+ + L WN + + +LQ+ + + FLY +K+ LW+LWP+ LA
Sbjct 2 SNGSIPVDEVIEHLRNWNFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLA 61
Query 64 C--FVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLN 121
F A +++NW+ +I MAC+ ++W+ YF+ S RL+ RT S WSFNPET+ LL
Sbjct 62 LSLFDAWASFQVNWVFFAFSILMACITLMLWIMYFVNSIRLWRRTHSWWSFNPETDALLT 121
Query 122 VPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVA-TSRTLSYY 179
+ G + P+L + + +L G L + G+ + + LP +TVA + T+ Y
Sbjct 122 TSVMGRQVCIPVLGAPTGVTLTLLSGTLFVEGYKVATGVQVSQLPNFVTVAKATTTIVYG 181
Query 180 KLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSS 212
++G S + +G+A Y R + G+Y ++ S+
Sbjct 182 RVGRSVNASSGTGWAFYVRSKHGDYSAVSNPSA 214
>sp|P59770|VME1_PEDVB Membrane protein OS=Porcine epidemic diarrhea
virus (strain Br1/87) OX=229033 GN=M PE=3 SV=1
Length=226
Score = 122 bits (307), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/225 (33%), Positives = 125/225 (56%), Gaps = 7/225 (3%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
SNG+I V+E+ + L WN + + +LQ+ + + FLY +K+ LW+LWP+ LA
Sbjct 2 SNGSIPVDEVIEHLRNWNFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLA 61
Query 64 C--FVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLN 121
F A +++NW+ +I MAC+ ++W+ YF+ S RL+ RT S WSFNPET+ LL
Sbjct 62 LSLFDAWASFQVNWVFFAFSILMACITLMLWIMYFVNSIRLWRRTHSWWSFNPETDALLT 121
Query 122 VPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVA-TSRTLSYY 179
+ G + P+L + + +L G L + G+ + + LP +TVA + T+ Y
Sbjct 122 TSVMGRQVCIPVLGAPTGVTLTLLSGTLLVEGYKVATGVQVSQLPNFVTVAKATTTIVYG 181
Query 180 KLGASQRVAGDSGFAAYSRYRIGNYKLNTDHS---SSSDNIALLV 221
++G S + +G+A Y R + G+Y ++ S + S+ + LV
Sbjct 182 RVGRSVNASSGTGWAFYVRSKHGDYSAVSNPSAVLTDSEKVPHLV 226
>sp|Q0Q463|VME1_BC512 Membrane protein OS=Bat coronavirus 512/2005
OX=693999 GN=M PE=3 SV=1
Length=227
Score = 120 bits (302), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 116/206 (56%), Gaps = 4/206 (2%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
SN ++ VEE+ K L WN + + +LQ+ + +R LY +K+ LWLLWP+ L
Sbjct 2 SSNQSVPVEEVIKHLRNWNFSWNIILTILLVVLQYGHYKYSRVLYGLKMAILWLLWPLVL 61
Query 63 A--CFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A F A + +NW+ +I MAC+ ++W+ YF+ S RL+ RT S WS+NPET+ +L
Sbjct 62 ALSIFDAWASFNVNWVFFAFSILMACVTAVLWIMYFVNSIRLWRRTHSWWSYNPETDSIL 121
Query 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVA-TSRTLSY 178
+V + G + P+L + + +L G L + G+ + + +LP +TVA S T+ Y
Sbjct 122 SVSVLGRHVCLPILGAPTGVTLTLLNGTLLVEGYQVATGVQVNNLPGYVTVAKASTTIVY 181
Query 179 YKLGASQRVAGDSGFAAYSRYRIGNY 204
++G S +G+A + + + G+Y
Sbjct 182 QRVGRSMNANSSTGWAFFVKSKHGDY 207
>sp|P05136|VME1_IBV6 Membrane protein OS=Avian infectious bronchitis
virus (strain 6/82) OX=11121 GN=M PE=3 SV=1
Length=225
Score = 117 bits (294), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/191 (36%), Positives = 106/191 (55%), Gaps = 7/191 (4%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
+N T+ E+ +L +++NL + L LLQ+ YA RN+ +YI+K+I LW WP+ +A
Sbjct 5 TNCTLGTEQAVQLFKEYNLFVTAFLLFLTILLQYGYATRNKVIYILKMIVLWCFWPLNIA 64
Query 64 CFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLN 121
++ +Y N TGG+ AI + L ++ Y+I SFRLF R RS W+FNPE+N + +
Sbjct 65 VGAISCIYPPN--TGGLVAAIILTVFACLSFIGYWIQSFRLFKRCRSWWAFNPESNAVGS 122
Query 122 VPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK 180
+ L +ES +V+ +I G L G L +C+ LPK+I V T + Y+
Sbjct 123 ILLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYR 182
Query 181 LGASQRVAGDS 191
+ QR GD
Sbjct 183 M--VQRYTGDQ 191
>sp|P69606|VME1_IBVM Membrane protein OS=Avian infectious bronchitis
virus (strain M41) OX=11127 GN=M PE=2 SV=1
Length=225
Score = 117 bits (294), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ +Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES +V+ +I G L G L +C+ LPK+I V T + Y
Sbjct 122 SILLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYTGDQ 191
>sp|P69607|VME1_IBVH5 Membrane protein OS=Avian infectious bronchitis
virus (strain H52) OX=231425 GN=M PE=2 SV=1
Length=225
Score = 117 bits (294), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ +Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES +V+ +I G L G L +C+ LPK+I V T + Y
Sbjct 122 SILLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYTGDQ 191
>sp|P12649|VME1_IBVK Membrane protein OS=Avian infectious bronchitis
virus (strain KB8523) OX=11126 GN=M PE=3 SV=1
Length=225
Score = 117 bits (293), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/192 (36%), Positives = 108/192 (56%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R RF+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRIRFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ +Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSCRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES +V+ +I G L G L +C+ LPK+I V T+ + Y
Sbjct 122 SILLTNGQQCNFAIESVPMVLAPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTADRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYTGDQ 191
>sp|Q9J3N8|VME1_IBVDE Membrane protein OS=Avian infectious bronchitis
virus (strain DE072) OX=233265 GN=M PE=3 SV=2
Length=225
Score = 117 bits (292), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 107/192 (56%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ +Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES V+ +I G L G L +C+ LPK+I V T + Y
Sbjct 122 SILLTNGQQCNFAIESVPTVLSPIIKNGFLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYTGDQ 191
>sp|P69604|VME1_IBVH1 Membrane protein OS=Avian infectious bronchitis
virus (strain H120) OX=231424 GN=M PE=3 SV=1
Length=225
Score = 117 bits (292), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ +Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES +V+ +I G L G L +C+ LPK+I V T + Y
Sbjct 122 SILLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYIGDQ 191
>sp|P69603|VME1_IBVD1 Membrane protein OS=Avian infectious bronchitis
virus (strain D1466) OX=231472 GN=M PE=3 SV=1
Length=225
Score = 117 bits (292), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ +Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES +V+ +I G L G L +C+ LPK+I V T + Y
Sbjct 122 SILLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYIGDQ 191
>sp|P69605|VME1_IBV41 Membrane protein OS=Avian infectious bronchitis
virus (strain D41) OX=236988 GN=M PE=3 SV=1
Length=225
Score = 117 bits (292), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ +Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES +V+ +I G L G L +C+ LPK+I V T + Y
Sbjct 122 SILLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYIGDQ 191
>sp|Q6Q1R9|VME1_CVHNL Membrane protein OS=Human coronavirus NL63
OX=277944 GN=M PE=3 SV=1
Length=226
Score = 115 bits (287), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 115/209 (55%), Gaps = 10/209 (5%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
SN ++ + E+ L WN + +I +LQ+ + +R LY +K+ LW LWP+ LA
Sbjct 2 SNSSVPLLEVYVHLRNWNFSWNLILTLFIVVLQYGHYKYSRLLYGLKMSVLWCLWPLVLA 61
Query 64 -----CFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
CFV + ++W+ G +I M+ + +W+ YF+ SFRL+ R ++ W+FNPETN
Sbjct 62 LSIFDCFV---NFNVDWVFFGFSILMSIITLCLWVMYFVNSFRLWRRVKTFWAFNPETNA 118
Query 119 LLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLG-RCDIKDLPKEITVAT-SRTL 176
++++ ++G P++ + + +L G L + GH + R + LPK + VAT S T+
Sbjct 119 IISLQVYGHNYYLPVMAAPTGVTLTLLSGVLLVDGHKIATRVQVGQLPKYVIVATPSTTI 178
Query 177 SYYKLGASQRVAGDSGFAAYSRYRIGNYK 205
++G S +G+A Y R + G++
Sbjct 179 VCDRVGRSVNETSQTGWAFYVRAKHGDFS 207
>sp|P11222|VME1_IBVB2 Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette M42) OX=11123 GN=M PE=1 SV=1
Length=225
Score = 113 bits (282), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++ +Y +K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ +Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES +V+ +I G L G L +C+ LPK+I V T + Y
Sbjct 122 SILLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYTGDQ 191
>sp|Q910E2|VME1_IBVG Membrane protein OS=Avian infectious bronchitis
virus (strain Gray) OX=31624 GN=M PE=2 SV=1
Length=223
Score = 113 bits (282), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/194 (37%), Positives = 107/194 (55%), Gaps = 8/194 (4%)
Query 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
MA+ N T+ E+ L +++NL I L LLQ+ YA R+R +YI+K+I LW WP+
Sbjct 1 MAE-NCTLDSEQAVLLFKEYNLFITAFLLFLTILLQYGYATRSRTIYILKMIVLWCFWPL 59
Query 61 TLACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
+A V++ +Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N
Sbjct 60 NIAVGVISCIYPPN--TGGLVAAIILTVFACLSFVGYWIQSCRLFKRCRSWWSFNPESNA 117
Query 119 LLNVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLS 177
+ ++ L +ES +V+ +I G L G L +C+ LPK+I V T +
Sbjct 118 VGSILLTNGQQCNFAIESVPMVLAPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRN 177
Query 178 YYKLGASQRVAGDS 191
Y++ Q+ GD
Sbjct 178 IYRM--VQKYTGDQ 189
>sp|Q91QS9|VME1_IBVBU Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette US) OX=160750 GN=M PE=3 SV=1
Length=225
Score = 112 bits (280), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 104/192 (54%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R + +Y +K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRTKVIYTLKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGG--IAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ Y N TGG +AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCTYPPN--TGGLVVAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES +V+ +I G L G L +C+ LPK+I V T + Y
Sbjct 122 SILLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYTGDQ 191
>sp|P69602|VME1_IBVBC Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette CK) OX=160235 GN=M PE=3 SV=1
Length=225
Score = 112 bits (280), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (55%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++ +Y +K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCTYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES +V+ +I G L G L +C+ LPK+I V T + Y
Sbjct 122 SILLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYTGDQ 191
>sp|P69601|VME1_IBVB Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette) OX=11122 GN=M PE=3 SV=1
Length=225
Score = 112 bits (280), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (55%), Gaps = 7/192 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++ +Y +K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGI--AIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A V++ Y N TGG+ AI + L ++ Y+I S RLF R RS WSFNPE+N +
Sbjct 64 AVGVISCTYPPN--TGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVG 121
Query 121 NVPLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYY 179
++ L +ES +V+ +I G L G L +C+ LPK+I V T + Y
Sbjct 122 SILLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIY 181
Query 180 KLGASQRVAGDS 191
++ Q+ GD
Sbjct 182 RM--VQKYTGDQ 191
>sp|P24412|VME1_CVPRM Membrane protein OS=Porcine respiratory
coronavirus (strain RM4) OX=11148 GN=M PE=3 SV=1
Length=262
Score = 111 bits (278), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%)
Query 2 ADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVT 61
+D +L LL WN + + +I +LQ+ + F+Y IK++ +WLLWP+
Sbjct 36 SDCESCFNRGDLIWLLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIV 95
Query 62 LACFVLAAV--YRIN-WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
LA + A Y+++ ++ G +IA A + ++W+ YF+ S +L+ RT+S WSFNPETN
Sbjct 96 LALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNA 155
Query 119 LLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVA-TSRTL 176
+L V G PL + +L G+L G + G I +LPK + VA SRT+
Sbjct 156 ILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMTIDNLPKYVMVALPSRTI 215
Query 177 SYYKLGASQRVAGDSGFAAYSRYRIGNY--KLNTDHSSSSDNIALLV 221
Y +G + + +G+A Y + + G+Y + TD+ S + + +V
Sbjct 216 VYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV 262
>sp|Q7T6S9|VME1_CVCBG Membrane protein OS=Canine coronavirus (strain
BGF10) OX=441619 GN=M PE=3 SV=1
Length=262
Score = 110 bits (275), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/209 (32%), Positives = 114/209 (55%), Gaps = 5/209 (2%)
Query 17 LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAV--YRIN 74
L WN + + +I +LQ+ + F+Y +K++ +WLLWP+ LA + A Y ++
Sbjct 51 LANWNFSWSVILIVFITVLQYGRPQFSWFVYGVKMLIMWLLWPIVLALTIFNAYSEYEVS 110
Query 75 -WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPL 133
++ G ++A A + ++W+ YF+ S +L+ RT+S WSFNPETN +L V G PL
Sbjct 111 RYVMFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPL 170
Query 134 LESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQRVAGDS 191
+ +L G+L G + G +I +LPK + VA SRT+ Y +G + + +
Sbjct 171 EGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKQLKASSAT 230
Query 192 GFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
G+A Y + + G+Y + + S++ LL
Sbjct 231 GWAYYVKSKAGDYSTDARTDTLSEHEKLL 259
>sp|P09175|VME1_CVPFS Membrane protein OS=Porcine transmissible
gastroenteritis coronavirus (strain FS772/70) OX=11150 GN=M
PE=1 SV=1
Length=262
Score = 109 bits (273), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 117/212 (55%), Gaps = 7/212 (3%)
Query 17 LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAV--YRIN 74
L WN + + +I +LQ+ + F+Y IK++ +WLLWP+ LA + A Y+++
Sbjct 51 LANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVS 110
Query 75 -WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPL 133
++ G++IA A + ++W+ YF+ S +L+ RT+S WSFNPE N +L V G PL
Sbjct 111 RYVMFGVSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPEINAILCVSALGRSYVLPL 170
Query 134 LESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQRVAGDS 191
+ +L G+L G + G +I +LPK + VA SRT+ Y +G + + +
Sbjct 171 EGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSAT 230
Query 192 GFAAYSRYRIGNYKLN--TDHSSSSDNIALLV 221
G+A Y + + G+Y + TD+ S + + +V
Sbjct 231 GWAYYVKSKAGDYSTDARTDNLSEQEKLLHMV 262
>sp|P33464|VME1_CVPR8 Membrane protein OS=Porcine respiratory
coronavirus (strain 86/137004 / isolate British) OX=33736 GN=M
PE=3 SV=1
Length=262
Score = 109 bits (273), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/212 (33%), Positives = 116/212 (55%), Gaps = 7/212 (3%)
Query 17 LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAV--YRIN 74
L WN + + +I +LQ+ + F+Y IK++ +WLLWP+ LA + A Y+++
Sbjct 51 LANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIVLALTIFNAYSEYQVS 110
Query 75 -WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPL 133
++ G +IA A + ++W+ YF+ S +L+ RT+S WSFNPETN +L V G PL
Sbjct 111 RYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNAILCVSALGRSYVLPL 170
Query 134 LESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQRVAGDS 191
+ +L G+L G + G I +LPK + VA SRT+ Y +G + + +
Sbjct 171 EGVPTGVTLTLLSGNLYAEGFKIAGGMTIDNLPKYVMVALPSRTIVYTLVGKKLKASSAT 230
Query 192 GFAAYSRYRIGNY--KLNTDHSSSSDNIALLV 221
G+A Y + + G+Y + TD+ S + + +V
Sbjct 231 GWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV 262
>sp|P04135|VME1_CVPPU Membrane protein OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=M
PE=1 SV=2
Length=262
Score = 109 bits (272), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/212 (33%), Positives = 116/212 (55%), Gaps = 7/212 (3%)
Query 17 LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAV--YRIN 74
L WN + + +I +LQ+ + F+Y IK++ +WLLWPV LA + A Y+++
Sbjct 51 LANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPVVLALTIFNAYSEYQVS 110
Query 75 -WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPL 133
++ G +IA A + ++W+ YF+ S +L+ RT+S WSFNPET +L V G PL
Sbjct 111 RYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKAILCVSALGRSYVLPL 170
Query 134 LESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVA-TSRTLSYYKLGASQRVAGDS 191
+ +L G+L G + G +I +LPK + VA SRT+ Y +G + + +
Sbjct 171 EGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTIVYTLVGKKLKASSAT 230
Query 192 GFAAYSRYRIGNY--KLNTDHSSSSDNIALLV 221
G+A Y + + G+Y + TD+ S + + +V
Sbjct 231 GWAYYVKSKAGDYSTEARTDNLSEQEKLLHMV 262
>sp|P25878|VME1_FIPV Membrane protein OS=Feline coronavirus (strain
FIPV WSU-79/1146) OX=33734 GN=M PE=1 SV=1
Length=262
Score = 107 bits (266), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/209 (32%), Positives = 112/209 (54%), Gaps = 5/209 (2%)
Query 17 LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAV--YRIN 74
L WN + + +I +LQ+ + +Y IK++ +WLLWP+ LA + A Y+++
Sbjct 51 LANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIVLALTIFNAYSEYQVS 110
Query 75 -WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPL 133
++ G ++A A + +W+ YF+ S +L+ RT+S WSFNPETN +L V G PL
Sbjct 111 RYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALGRSYVLPL 170
Query 134 LESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVAT-SRTLSYYKLGASQRVAGDS 191
+ + +L G+L G + G I+ LPK + +AT SRT+ Y +G + +
Sbjct 171 DGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTIVYTLVGKQLKATTAT 230
Query 192 GFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
G+A Y + + G+Y + S++ LL
Sbjct 231 GWAYYVKSKAGDYSTEARTDNLSEHEKLL 259
>sp|P36299|VME1_CVCAI Membrane protein OS=Canine coronavirus (strain
Insavc-1) OX=36391 GN=M PE=3 SV=1
Length=262
Score = 103 bits (258), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 113/209 (54%), Gaps = 5/209 (2%)
Query 17 LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAV--YRIN 74
L WN + + +I +LQ+ + F+ IK++ +WLLWP+ LA + A YR++
Sbjct 51 LANWNFSWSVILIIFITVLQYGRPQFSWFVCGIKMLIMWLLWPIVLALTIFNAYLEYRVS 110
Query 75 -WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPL 133
++ G ++A A + ++W+ YF+ S +L+ RT+S WSFNPET+ +L V G PL
Sbjct 111 RYVMFGFSVAGATVTFILWIMYFVRSIQLYRRTKSWWSFNPETSAILCVSALGRSYVLPL 170
Query 134 LESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVATS-RTLSYYKLGASQRVAGDS 191
+ +L G+L G + G +I +LPK + VA RT+ Y +G + + +
Sbjct 171 EGVPTGVTLTLLSGNLCAEGFKIAGGMNIDNLPKYVMVALPVRTIVYTLVGKKLKASSAT 230
Query 192 GFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
G+A Y + + G+Y + + S++ LL
Sbjct 231 GWAYYVKSKAGDYSTDARTDNLSEHEKLL 259
>sp|P15422|VME1_CVH22 Membrane protein OS=Human coronavirus 229E
OX=11137 GN=M PE=3 SV=3
Length=225
Score = 86.7 bits (213), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/225 (31%), Positives = 117/225 (52%), Gaps = 8/225 (4%)
Query 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
M++ N T ++ L+ WN + +I +LQF + +R Y +K++ LWLLWP+
Sbjct 1 MSNDNCT---GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPL 57
Query 61 TL--ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
L + F A + NW + MA +MW+ YF SFRLF R R+ W++NPE N
Sbjct 58 VLALSIFDTWANWDSNWAFVAFSFFMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNA 117
Query 119 LLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVAT-SRTL 176
+ + G +P+ ++ I +L G L + GH L + +LP+ +TVA S T+
Sbjct 118 ITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTI 177
Query 177 SYYKLGASQRVAGDSGFAAYSRYRIGNYK-LNTDHSSSSDNIALL 220
Y ++G S +G+ Y R + G++ +++ S+ ++N LL
Sbjct 178 IYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLL 222
>sp|H6WS94|PDR1_PETHY Pleiotropic drug resistance protein 1 OS=Petunia
hybrida OX=4102 GN=PDR1 PE=2 SV=1
Length=1452
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (9%)
Query 41 NRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWITGGI-------AIAMACLVGLMWL 93
RN F+YI K+I L L+ +T+ F+ ++R I G + A+ M G L
Sbjct 517 KRNSFVYIFKMIQLTLMASITMTLFLPTEMHRNTTIDGAVFLGALFYALIMIMFNGFSEL 576
Query 94 SYFIASFRLFARTRSMWSFNP 114
+ I F + R + F P
Sbjct 577 ALSIMKLPSFYKHRDLLFFPP 597
>sp|H6WS93|PDR1_PETAX Pleiotropic drug resistance protein 1 OS=Petunia
axillaris OX=33119 GN=PDR1 PE=2 SV=1
Length=1452
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (9%)
Query 41 NRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWITGGI-------AIAMACLVGLMWL 93
RN F+YI K+I L L+ +T+ F+ ++R I G + A+ M G L
Sbjct 517 KRNSFVYIFKMIQLTLMASITMTLFLRTEMHRNTTIDGAVFLGALFYALIMIMFNGFSEL 576
Query 94 SYFIASFRLFARTRSMWSFNP 114
+ I F + R + F P
Sbjct 577 ALSIMKLPSFYKHRDLLFFPP 597
>sp|Q9LRN6|CML22_ARATH Probable calcium-binding protein CML22
OS=Arabidopsis thaliana OX=3702 GN=CML22 PE=3 SV=1
Length=229
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 0/20 (0%)
Query 3 DSNGTITVEELKKLLEQWNL 22
D+NGTI +EELKK LE+ L
Sbjct 68 DTNGTIDIEELKKCLEELKL 87
>sp|Q93Y08|AB1K8_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE
8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABC1K8 PE=2
SV=1
Length=761
Score = 31.2 bits (69), Expect = 8.4, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 0/31 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAY 39
T +++ LE W V+ F+F TW+ +F+Y
Sbjct 172 TYSTIQRTLEIWGFVVQFIFRTWLSNKKFSY 202
>sp|P94438|LNRJ_BACSU Sensor histidine kinase LnrJ OS=Bacillus
subtilis (strain 168) OX=224308 GN=lnrJ PE=1 SV=1
Length=400
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query 31 WICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWITGGIAIAMACLVGL 90
W CL+ A F++ +F+ +L PV +A F+ R W ++ CL +
Sbjct 56 WFCLIDIAIGFSFGFIFPGTGLFIIMLCPVAVAFFLRGFPKRTAW-------SVLCLSSI 108
Query 91 MWLSYFIASFRLFA 104
++L+ I ++ +F
Sbjct 109 LFLTVLIRTYAMFG 122
Lambda K H a alpha
0.328 0.141 0.444 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 15287642784
Results from round 2
Query= YP_009724393.1 membrane glycoprotein [Severe acute respiratory
syndrome coronavirus 2]
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|P0DTC5|VME1_SARS2 Membrane protein OS=Severe acute respiratory... 279 1e-94
sp|Q8BB24|VME1_CVP67 Membrane protein OS=Porcine hemagglutinating... 275 3e-93
sp|Q9JEB4|VME1_CVM2 Membrane protein OS=Murine coronavirus (strai... 275 3e-93
sp|Q3LZX9|VME1_BCHK3 Membrane protein OS=Bat coronavirus HKU3 OX=... 273 1e-92
sp|Q8JSP5|VME1_CVPIA Membrane protein OS=Porcine hemagglutinating... 273 2e-92
sp|Q0Q472|VME1_BC279 Membrane protein OS=Bat coronavirus 279/2005... 272 2e-92
sp|Q3I5J2|VME1_BCRP3 Membrane protein OS=Bat coronavirus Rp3/2004... 272 3e-92
sp|P69600|VME1_CVBOK Membrane protein OS=Bovine coronavirus (stra... 272 4e-92
sp|P69599|VME1_CVBLS Membrane protein OS=Bovine coronavirus (stra... 272 4e-92
sp|P59596|VME1_SARS Membrane protein OS=Severe acute respiratory ... 272 4e-92
sp|Q8V433|VME1_CVBLU Membrane protein OS=Bovine coronavirus (stra... 271 8e-92
sp|Q91A23|VME1_CVBEN Membrane protein OS=Bovine coronavirus (stra... 271 1e-91
sp|A3EXD6|VME1_BCHK5 Membrane protein OS=Bat coronavirus HKU5 OX=... 267 4e-90
sp|Q0Q4E7|VME1_BC133 Membrane protein OS=Bat coronavirus 133/2005... 267 4e-90
sp|A3EXA0|VME1_BCHK4 Membrane protein OS=Bat coronavirus HKU4 OX=... 266 1e-89
sp|Q5MQC7|VME1_CVHN1 Membrane protein OS=Human coronavirus HKU1 (... 265 2e-89
sp|P33464|VME1_CVPR8 Membrane protein OS=Porcine respiratory coro... 263 4e-88
sp|P03415|VME1_CVMA5 Membrane protein OS=Murine coronavirus (stra... 261 8e-88
sp|P24412|VME1_CVPRM Membrane protein OS=Porcine respiratory coro... 262 2e-87
sp|P69705|VME1_CVBQ Membrane protein OS=Bovine coronavirus (strai... 258 1e-86
sp|P69704|VME1_CVBM Membrane protein OS=Bovine coronavirus (strai... 258 1e-86
sp|P69703|VME1_CVBF Membrane protein OS=Bovine coronavirus (strai... 258 1e-86
sp|Q9QAR9|VME1_CVBLY Membrane protein OS=Bovine coronavirus (stra... 258 1e-86
sp|P08549|VME1_CVMJH Membrane protein OS=Murine coronavirus (stra... 258 2e-86
sp|P04135|VME1_CVPPU Membrane protein OS=Porcine transmissible ga... 259 2e-86
sp|A3EXG9|VME1_BCHK9 Membrane protein OS=Bat coronavirus HKU9 OX=... 256 6e-86
sp|K9N7A1|VME1_MERS1 Membrane protein OS=Middle East respiratory ... 256 8e-86
sp|P26021|VME1_CVTKE Membrane protein OS=Turkey enteric coronavir... 256 9e-86
sp|P09175|VME1_CVPFS Membrane protein OS=Porcine transmissible ga... 257 1e-85
sp|Q9IKC7|VME1_CVRSD Membrane protein OS=Rat coronavirus (strain ... 256 1e-85
sp|Q9WCD1|VME1_CVRNJ Membrane protein (Fragment) OS=Rat coronavir... 255 3e-85
sp|Q01455|VME1_CVHOC Membrane protein OS=Human coronavirus OC43 O... 254 5e-85
sp|Q0ZME4|VME1_CVHN5 Membrane protein OS=Human coronavirus HKU1 (... 253 9e-85
sp|Q14EA7|VME1_CVHN2 Membrane protein OS=Human coronavirus HKU1 (... 253 1e-84
sp|P25878|VME1_FIPV Membrane protein OS=Feline coronavirus (strai... 253 5e-84
sp|Q7T6S9|VME1_CVCBG Membrane protein OS=Canine coronavirus (stra... 252 2e-83
sp|P59771|VME1_PEDV7 Membrane protein OS=Porcine epidemic diarrhe... 248 2e-82
sp|P36299|VME1_CVCAI Membrane protein OS=Canine coronavirus (stra... 248 5e-82
sp|Q6Q1R9|VME1_CVHNL Membrane protein OS=Human coronavirus NL63 O... 238 9e-79
sp|Q0Q463|VME1_BC512 Membrane protein OS=Bat coronavirus 512/2005... 236 6e-78
sp|P59770|VME1_PEDVB Membrane protein OS=Porcine epidemic diarrhe... 236 8e-78
sp|P69606|VME1_IBVM Membrane protein OS=Avian infectious bronchit... 217 1e-70
sp|P69607|VME1_IBVH5 Membrane protein OS=Avian infectious bronchi... 217 1e-70
sp|P69604|VME1_IBVH1 Membrane protein OS=Avian infectious bronchi... 217 2e-70
sp|P69603|VME1_IBVD1 Membrane protein OS=Avian infectious bronchi... 217 2e-70
sp|P69605|VME1_IBV41 Membrane protein OS=Avian infectious bronchi... 217 2e-70
sp|Q9J3N8|VME1_IBVDE Membrane protein OS=Avian infectious bronchi... 217 2e-70
sp|P11222|VME1_IBVB2 Membrane protein OS=Avian infectious bronchi... 215 2e-69
sp|P69602|VME1_IBVBC Membrane protein OS=Avian infectious bronchi... 214 3e-69
sp|P69601|VME1_IBVB Membrane protein OS=Avian infectious bronchit... 214 3e-69
sp|P05136|VME1_IBV6 Membrane protein OS=Avian infectious bronchit... 214 3e-69
sp|Q91QS9|VME1_IBVBU Membrane protein OS=Avian infectious bronchi... 213 6e-69
sp|Q910E2|VME1_IBVG Membrane protein OS=Avian infectious bronchit... 211 4e-68
sp|P12649|VME1_IBVK Membrane protein OS=Avian infectious bronchit... 211 6e-68
sp|P15422|VME1_CVH22 Membrane protein OS=Human coronavirus 229E O... 208 7e-67
Sequences not found previously or not previously below threshold:
sp|F4JT80|RPP2B_ARATH Disease resistance protein RPP2B OS=Arabido... 37.6 0.082
sp|Q9FLT4|AB10A_ARATH ABC transporter A family member 10 OS=Arabi... 31.9 5.6
>sp|P0DTC5|VME1_SARS2 Membrane protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=M PE=1 SV=1
Length=222
Score = 279 bits (713), Expect = 1e-94, Method: Composition-based stats.
Identities = 222/222 (100%), Positives = 222/222 (100%), Gaps = 0/222 (0%)
Query 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV
Sbjct 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
Query 61 TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL
Sbjct 61 TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
Query 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK 180
NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK
Sbjct 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK 180
Query 181 LGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
LGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ
Sbjct 181 LGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
>sp|Q8BB24|VME1_CVP67 Membrane protein OS=Porcine hemagglutinating
encephalomyelitis virus (strain 67N) OX=230237 GN=M PE=3
SV=1
Length=230
Score = 275 bits (704), Expect = 3e-93, Method: Composition-based stats.
Identities = 87/215 (40%), Positives = 128/215 (60%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
+ T +E K L++WN +G + L +LQF Y +R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 SWTADEAIKFLKEWNFSLGIIVLFITIILQFGYTSRSMFVYVIKMVILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWVVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + A I+RGHL I G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTATIIRGHLYIQGIKLGTGYSLSDLPAYVTVAKVTHLCTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
R+ SGFA Y + ++GNY+L + H S + ALL
Sbjct 192 RIGDTSGFAVYVKSKVGNYRLPSTHKGSGMDTALL 226
>sp|Q9JEB4|VME1_CVM2 Membrane protein OS=Murine coronavirus (strain
2) OX=76344 GN=M PE=1 SV=1
Length=228
Score = 275 bits (704), Expect = 3e-93, Method: Composition-based stats.
Identities = 84/214 (39%), Positives = 126/214 (59%), Gaps = 1/214 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T +E + L++WN +G + L +LQF Y +R+ F+Y++K+I LWL+WP+T+ +
Sbjct 15 TADEAIRFLKEWNFSLGIILLFVTIILQFGYTSRSMFVYVVKMILLWLMWPLTIVLCIFN 74
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIIMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCTDMKGTV 134
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A I+RGHL + G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLV 221
G SGFA Y + ++GNY+L ++ S D L +
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGMDTALLRI 228
>sp|Q3LZX9|VME1_BCHK3 Membrane protein OS=Bat coronavirus HKU3
OX=442736 GN=M PE=3 SV=1
Length=221
Score = 273 bits (699), Expect = 1e-92, Method: Composition-based stats.
Identities = 199/219 (91%), Positives = 211/219 (96%), Gaps = 0/219 (0%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
NGTITVEELK+LLEQWNLVIGF+FL WI LLQFAY+NRNRFLYIIKL+FLWLLWPVTLA
Sbjct 3 DNGTITVEELKQLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
Query 64 CFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVP 123
CFVLAAVYRINW+TGGIAIAMAC+VGLMWLSYF+ASFRLFARTRSMWSFNPETNILLNVP
Sbjct 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
Query 124 LHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGA 183
L GTILTRPL+ESELVIGAVI+RGHLR+AGH LGRCDIKDLPKEITVATSRTLSYYKLGA
Sbjct 123 LRGTILTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLGA 182
Query 184 SQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
SQRV DSGFAAY+RYRIGNYKLNTDHS S+DNIALLVQ
Sbjct 183 SQRVGTDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|Q8JSP5|VME1_CVPIA Membrane protein OS=Porcine hemagglutinating
encephalomyelitis virus (strain IAF-404) OX=230236 GN=M
PE=3 SV=1
Length=230
Score = 273 bits (699), Expect = 2e-92, Method: Composition-based stats.
Identities = 85/215 (40%), Positives = 127/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
+ T +E K L++WN +G + L +LQF Y +R+ F+Y++K++ LW +WP+T+ +
Sbjct 12 SWTADEAIKFLKEWNFSLGIIVLFITIILQFGYTSRSMFVYVVKMVILWFMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWVVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + A I+RGHL I G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTATIIRGHLYIQGIKLGTGYSLSDLPAYVTVAKVTHLCTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
R+ SGFA Y + ++GNY+L + H S + ALL
Sbjct 192 RIGDTSGFAVYVKSKVGNYRLPSTHKGSGMDTALL 226
>sp|Q0Q472|VME1_BC279 Membrane protein OS=Bat coronavirus 279/2005
OX=389167 GN=M PE=3 SV=1
Length=221
Score = 272 bits (697), Expect = 2e-92, Method: Composition-based stats.
Identities = 200/219 (91%), Positives = 211/219 (96%), Gaps = 0/219 (0%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
NGTITVEELK+LLEQWNLVIGF+FL WI LLQFAY+NRNRFLYIIKL+FLWLLWPVTLA
Sbjct 3 DNGTITVEELKQLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
Query 64 CFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVP 123
CFVLAAVYRINW+TGGIAIAMAC+VGLMWLSYF+ASFRLFARTRSMWSFNPETNILLNVP
Sbjct 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
Query 124 LHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGA 183
L GTILTRPLLESELVIGAVI+RGHLR+AGH LGRCDIKDLPKEITVATSRTLSYYKLGA
Sbjct 123 LRGTILTRPLLESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLGA 182
Query 184 SQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
SQRV DSGFAAY+RYRIGNYKLNTDHS S+DNIALLVQ
Sbjct 183 SQRVGNDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|Q3I5J2|VME1_BCRP3 Membrane protein OS=Bat coronavirus Rp3/2004
OX=349344 GN=M PE=3 SV=1
Length=221
Score = 272 bits (696), Expect = 3e-92, Method: Composition-based stats.
Identities = 198/218 (91%), Positives = 211/218 (97%), Gaps = 0/218 (0%)
Query 5 NGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLAC 64
NGTI+VEELK+LLEQWNLVIGF+FL WI LLQFAY+NRNRFLYIIKL+FLWLLWPVTLAC
Sbjct 4 NGTISVEELKRLLEQWNLVIGFIFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63
Query 65 FVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPL 124
FVLAAVYRINW+TGGIAIAMAC+VGLMWLSYF+ASFRLFARTRSMWSFNPETNILLNVPL
Sbjct 64 FVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVPL 123
Query 125 HGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGAS 184
GTILTRPL+ESELVIGAVI+RGHLR+AGH LGRCDIKDLPKEITVATSRTLSYYKLGAS
Sbjct 124 RGTILTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLGAS 183
Query 185 QRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
QRV DSGFAAY+RYRIGNYKLNTDHS S+DNIALLVQ
Sbjct 184 QRVGTDSGFAAYNRYRIGNYKLNTDHSGSNDNIALLVQ 221
>sp|P69600|VME1_CVBOK Membrane protein OS=Bovine coronavirus (strain
OK-0514) OX=231432 GN=M PE=3 SV=1
Length=230
Score = 272 bits (697), Expect = 4e-92, Method: Composition-based stats.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69599|VME1_CVBLS Membrane protein OS=Bovine coronavirus (strain
LSU-94LSS-051) OX=233261 GN=M PE=3 SV=1
Length=230
Score = 272 bits (697), Expect = 4e-92, Method: Composition-based stats.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P59596|VME1_SARS Membrane protein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=M PE=1 SV=1
Length=221
Score = 272 bits (696), Expect = 4e-92, Method: Composition-based stats.
Identities = 198/219 (90%), Positives = 211/219 (96%), Gaps = 0/219 (0%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
NGTITVEELK+LLEQWNLVIGFLFL WI LLQFAY+NRNRFLYIIKL+FLWLLWPVTLA
Sbjct 3 DNGTITVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLA 62
Query 64 CFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVP 123
CFVLAAVYRINW+TGGIAIAMAC+VGLMWLSYF+ASFRLFARTRSMWSFNPETNILLNVP
Sbjct 63 CFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRSMWSFNPETNILLNVP 122
Query 124 LHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGA 183
L GTI+TRPL+ESELVIGAVI+RGHLR+AGH LGRCDIKDLPKEITVATSRTLSYYKLGA
Sbjct 123 LRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLGA 182
Query 184 SQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ 222
SQRV DSGFAAY+RYRIGNYKLNTDH+ S+DNIALLVQ
Sbjct 183 SQRVGTDSGFAAYNRYRIGNYKLNTDHAGSNDNIALLVQ 221
>sp|Q8V433|VME1_CVBLU Membrane protein OS=Bovine coronavirus (strain
98TXSF-110-LUN) OX=233264 GN=M PE=3 SV=1
Length=230
Score = 271 bits (694), Expect = 8e-92, Method: Composition-based stats.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALL 226
>sp|Q91A23|VME1_CVBEN Membrane protein OS=Bovine coronavirus (strain
98TXSF-110-ENT) OX=233262 GN=M PE=3 SV=1
Length=230
Score = 271 bits (693), Expect = 1e-91, Method: Composition-based stats.
Identities = 84/215 (39%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK++ LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITVILQFGYTSRSMFVYVIKMVILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGLDTALL 226
>sp|A3EXD6|VME1_BCHK5 Membrane protein OS=Bat coronavirus HKU5
OX=694008 GN=M PE=1 SV=1
Length=220
Score = 267 bits (683), Expect = 4e-90, Method: Composition-based stats.
Identities = 90/207 (43%), Positives = 129/207 (62%), Gaps = 0/207 (0%)
Query 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
MA SN T++ +E+ +L++ WN +FL +LQ+ Y +R+ F+Y+IK+ LWLLWP
Sbjct 1 MASSNVTLSNDEVLRLVKDWNFTWSVVFLLITIVLQYGYPSRSMFVYVIKMFVLWLLWPA 60
Query 61 TLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
++A + AVY I+ + I+ +A MW+SYF+ S RLF RT S WSFNPE+N LL
Sbjct 61 SMALSIFCAVYPIDLASQIISGILAATSCAMWISYFVQSIRLFMRTGSWWSFNPESNCLL 120
Query 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYK 180
NVP+ GT + RPL+E + AV+ G+L++AG H G CD + LP E+TVA L K
Sbjct 121 NVPIGGTTVVRPLVEDSTSVTAVVTDGYLKMAGMHFGACDFQRLPSEVTVAKPNVLIALK 180
Query 181 LGASQRVAGDSGFAAYSRYRIGNYKLN 207
+ Q +SG A Y RY+ GNY+
Sbjct 181 MIKRQAYGTNSGVAIYHRYKAGNYRRP 207
>sp|Q0Q4E7|VME1_BC133 Membrane protein OS=Bat coronavirus 133/2005
OX=389230 GN=M PE=3 SV=1
Length=219
Score = 267 bits (682), Expect = 4e-90, Method: Composition-based stats.
Identities = 88/206 (43%), Positives = 129/206 (63%), Gaps = 0/206 (0%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
SNG++T +E+ +++ WN +FL +LQ+ Y +R+ +Y+ K+ LWLLWP ++
Sbjct 2 SSNGSLTKDEVVNIIKDWNFSWSIIFLLITIVLQYGYPSRSMMVYVFKMFILWLLWPASM 61
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A + +A+Y I+ + I+ +A + +MWL+YF+ S RLF RT S WSFNPE+N LLNV
Sbjct 62 ALSIFSAIYPISLASQIISGILAAICAVMWLAYFVQSIRLFMRTGSWWSFNPESNCLLNV 121
Query 123 PLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLG 182
P+ GT + RPL+E + AV+ GHL++AG H GRCD LP EITVA L K+
Sbjct 122 PIGGTTVVRPLVEDSTSVTAVVNDGHLKMAGMHFGRCDYDRLPMEITVAKPSVLIALKMV 181
Query 183 ASQRVAGDSGFAAYSRYRIGNYKLNT 208
Q +SG A + RY+ GNY+ T
Sbjct 182 KRQSYGTNSGVAIFHRYKAGNYRRPT 207
>sp|A3EXA0|VME1_BCHK4 Membrane protein OS=Bat coronavirus HKU4
OX=694007 GN=M PE=3 SV=1
Length=219
Score = 266 bits (680), Expect = 1e-89, Method: Composition-based stats.
Identities = 88/206 (43%), Positives = 129/206 (63%), Gaps = 0/206 (0%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
SNG++T +E+ +++ WN +FL +LQ+ Y +R+ +Y+ K+ LWLLWP ++
Sbjct 2 SSNGSLTKDEVVNIIKDWNFSWSIIFLLITIVLQYGYPSRSMMVYVFKMFILWLLWPASM 61
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A + +A+Y I+ + I+ +A + +MWL+YF+ S RLF RT S WSFNPE+N LLNV
Sbjct 62 ALSIFSAIYPISLSSQIISGILAAICAVMWLAYFVQSIRLFMRTGSWWSFNPESNCLLNV 121
Query 123 PLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLG 182
P+ GT + RPL+E + AV+ GHL++AG H GRCD LP EITVA L K+
Sbjct 122 PIGGTTVVRPLVEDSTSVTAVVNDGHLKMAGMHFGRCDYDRLPMEITVAKPSVLIALKMV 181
Query 183 ASQRVAGDSGFAAYSRYRIGNYKLNT 208
Q +SG A + RY+ GNY+ T
Sbjct 182 KRQSYGTNSGVAIFHRYKAGNYRRPT 207
>sp|Q5MQC7|VME1_CVHN1 Membrane protein OS=Human coronavirus HKU1
(isolate N1) OX=443239 GN=M PE=3 SV=1
Length=223
Score = 265 bits (678), Expect = 2e-89, Method: Composition-based stats.
Identities = 77/213 (36%), Positives = 121/213 (57%), Gaps = 1/213 (0%)
Query 8 ITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVL 67
T ++ L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 9 FTSDQAVTFLKEWNFSLGVILLFITIILQFGYTSRSMFVYLIKMIILWLMWPLTITLTIF 68
Query 68 AAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGT 127
Y +N +I + ++W+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 69 NCFYALNNAFLAFSIVFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGK 128
Query 128 ILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQR 186
+ RP++E + A ++RGHL I G LG + DLP +TVA + L YK +
Sbjct 129 MFVRPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLSDLPVYVTVAKVQVLCTYKRAFLDK 188
Query 187 VAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIAL 219
+ +SGFA + + ++GNY+L + S D L
Sbjct 189 LDVNSGFAVFVKSKVGNYRLPSSKPSGMDTALL 221
>sp|P33464|VME1_CVPR8 Membrane protein OS=Porcine respiratory
coronavirus (strain 86/137004 / isolate British) OX=33736 GN=M
PE=3 SV=1
Length=262
Score = 263 bits (673), Expect = 4e-88, Method: Composition-based stats.
Identities = 70/224 (31%), Positives = 116/224 (52%), Gaps = 5/224 (2%)
Query 2 ADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVT 61
+D +L L WN + + +I +LQ+ + F+Y IK++ +WLLWP+
Sbjct 36 SDCESCFNRGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIV 95
Query 62 LACFVLAAV--YRIN-WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
LA + A Y+++ ++ G +IA A + ++W+ YF+ S +L+ RT+S WSFNPETN
Sbjct 96 LALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNA 155
Query 119 LLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVA-TSRTL 176
+L V G PL + +L G+L G + G I +LPK + VA SRT+
Sbjct 156 ILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMTIDNLPKYVMVALPSRTI 215
Query 177 SYYKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
Y +G + + +G+A Y + + G+Y + S+ LL
Sbjct 216 VYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLL 259
>sp|P03415|VME1_CVMA5 Membrane protein OS=Murine coronavirus (strain
A59) OX=11142 GN=M PE=1 SV=1
Length=228
Score = 261 bits (668), Expect = 8e-88, Method: Composition-based stats.
Identities = 83/214 (39%), Positives = 128/214 (60%), Gaps = 1/214 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T +E + L++WN +G + L +LQF Y +R+ F+Y++K+I LWL+WP+T+ +
Sbjct 15 TADEAVQFLKEWNFSLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 74
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + ++W+ YF+ S RLF RT S WSFNPETN L+ + + GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIVIWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGTV 134
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A I+RGHL + G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLV 221
G SGFA Y + ++GNY+L ++ S +D L +
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTALLRI 228
>sp|P24412|VME1_CVPRM Membrane protein OS=Porcine respiratory
coronavirus (strain RM4) OX=11148 GN=M PE=3 SV=1
Length=262
Score = 262 bits (669), Expect = 2e-87, Method: Composition-based stats.
Identities = 71/224 (32%), Positives = 117/224 (52%), Gaps = 5/224 (2%)
Query 2 ADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVT 61
+D +L LL WN + + +I +LQ+ + F+Y IK++ +WLLWP+
Sbjct 36 SDCESCFNRGDLIWLLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIV 95
Query 62 LACFVLAAV--YRIN-WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
LA + A Y+++ ++ G +IA A + ++W+ YF+ S +L+ RT+S WSFNPETN
Sbjct 96 LALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETNA 155
Query 119 LLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVA-TSRTL 176
+L V G PL + +L G+L G + G I +LPK + VA SRT+
Sbjct 156 ILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMTIDNLPKYVMVALPSRTI 215
Query 177 SYYKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
Y +G + + +G+A Y + + G+Y + S+ LL
Sbjct 216 VYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLL 259
>sp|P69705|VME1_CVBQ Membrane protein OS=Bovine coronavirus (strain
Quebec) OX=11133 GN=M PE=3 SV=1
Length=230
Score = 258 bits (660), Expect = 1e-86, Method: Composition-based stats.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69704|VME1_CVBM Membrane protein OS=Bovine coronavirus (strain
Mebus) OX=11132 GN=M PE=1 SV=1
Length=230
Score = 258 bits (660), Expect = 1e-86, Method: Composition-based stats.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P69703|VME1_CVBF Membrane protein OS=Bovine coronavirus (strain
F15) OX=11129 GN=M PE=3 SV=1
Length=230
Score = 258 bits (660), Expect = 1e-86, Method: Composition-based stats.
Identities = 85/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|Q9QAR9|VME1_CVBLY Membrane protein OS=Bovine coronavirus (strain
LY-138) OX=11131 GN=M PE=3 SV=1
Length=230
Score = 258 bits (660), Expect = 1e-86, Method: Composition-based stats.
Identities = 86/215 (40%), Positives = 126/215 (59%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
R+ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 RIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P08549|VME1_CVMJH Membrane protein OS=Murine coronavirus (strain
JHM) OX=11144 GN=M PE=1 SV=1
Length=228
Score = 258 bits (659), Expect = 2e-86, Method: Composition-based stats.
Identities = 82/214 (38%), Positives = 127/214 (59%), Gaps = 1/214 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T +E + L++WN +G + L +LQF Y +R+ F+Y++K+I LWL+WP+ + +
Sbjct 15 TADEAVQFLKEWNFSLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLIIVLCMFN 74
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSVVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGTV 134
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A I+RGH + G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATIIRGHFYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLV 221
G SGFA Y + ++GNY+L ++ S +D + L +
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTVLLRI 228
>sp|P04135|VME1_CVPPU Membrane protein OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151 GN=M
PE=1 SV=2
Length=262
Score = 259 bits (662), Expect = 2e-86, Method: Composition-based stats.
Identities = 70/224 (31%), Positives = 116/224 (52%), Gaps = 5/224 (2%)
Query 2 ADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVT 61
+D +L L WN + + +I +LQ+ + F+Y IK++ +WLLWPV
Sbjct 36 SDCESCFNGGDLIWHLANWNFSWSIILIVFITVLQYGRPQFSWFVYGIKMLIMWLLWPVV 95
Query 62 LACFVLAAV--YRIN-WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
LA + A Y+++ ++ G +IA A + ++W+ YF+ S +L+ RT+S WSFNPET
Sbjct 96 LALTIFNAYSEYQVSRYVMFGFSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPETKA 155
Query 119 LLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVA-TSRTL 176
+L V G PL + +L G+L G + G +I +LPK + VA SRT+
Sbjct 156 ILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTI 215
Query 177 SYYKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
Y +G + + +G+A Y + + G+Y + S+ LL
Sbjct 216 VYTLVGKKLKASSATGWAYYVKSKAGDYSTEARTDNLSEQEKLL 259
>sp|A3EXG9|VME1_BCHK9 Membrane protein OS=Bat coronavirus HKU9
OX=694006 GN=M PE=3 SV=1
Length=222
Score = 256 bits (655), Expect = 6e-86, Method: Composition-based stats.
Identities = 86/219 (39%), Positives = 135/219 (62%), Gaps = 1/219 (0%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
+ T+ E+ L+ WN + + L LLQ+ Y +R + +++IK+ LWLLWP+++
Sbjct 4 NCTNTVPRPEVIAALKDWNFAVSVILLFITVLLQWGYPSRCKPIWVIKMFILWLLWPLSI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V AA++ IN + G AIA AC+ G+MWLSYFI+SFRL RT S WSF PET++L+N+
Sbjct 64 AAAVFAAIHPINSVAFGFAIAFACISGIMWLSYFISSFRLLCRTGSAWSFMPETDMLINI 123
Query 123 PLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLG 182
PL G +TRP++ + +I+RG LR G LGRCD D+P +T+A L +YK
Sbjct 124 PLLGRTVTRPIISDSPAVQFLIIRGELRFDGFTLGRCDPGDMPDIVTIARPNALHWYKRA 183
Query 183 ASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLV 221
++ + S Y +Y++GN+++ + + D +A+ V
Sbjct 184 LTRNMYTRSAILVYIKYKVGNHRVQ-NTTEDGDRLAMFV 221
>sp|K9N7A1|VME1_MERS1 Membrane protein OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=M PE=3 SV=1
Length=219
Score = 256 bits (654), Expect = 8e-86, Method: Composition-based stats.
Identities = 87/205 (42%), Positives = 124/205 (60%), Gaps = 1/205 (0%)
Query 4 SNGT-ITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
SN T +T ++ +++ WN +FL +LQ+ Y +R+ +Y+ K+ LWLLWP ++
Sbjct 2 SNMTQLTEAQIIAIIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSM 61
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A + +AVY I+ + I+ +A + +MW+SYF+ S RLF RT S WSFNPETN LLNV
Sbjct 62 ALSIFSAVYPIDLASQIISGIVAAVSAMMWISYFVQSIRLFMRTGSWWSFNPETNCLLNV 121
Query 123 PLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLG 182
P GT + RPL+E + AV+ GHL++AG H G CD LP E+TVA L K+
Sbjct 122 PFGGTTVVRPLVEDSTSVTAVVTNGHLKMAGMHFGACDYDRLPNEVTVAKPNVLIALKMV 181
Query 183 ASQRVAGDSGFAAYSRYRIGNYKLN 207
Q +SG A Y RY+ GNY+
Sbjct 182 KRQSYGTNSGVAIYHRYKAGNYRSP 206
>sp|P26021|VME1_CVTKE Membrane protein OS=Turkey enteric coronavirus
OX=11152 GN=M PE=3 SV=1
Length=230
Score = 256 bits (655), Expect = 9e-86, Method: Composition-based stats.
Identities = 84/215 (39%), Positives = 125/215 (58%), Gaps = 1/215 (0%)
Query 7 TITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFV 66
T T +E K L++WN +G + L +LQF Y +R+ +Y+IK+I LWL+WP+T+ +
Sbjct 12 TWTADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMSVYVIKMIILWLMWPLTIILTI 71
Query 67 LAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHG 126
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + G
Sbjct 72 FNCVYALNNVYLGFSIVFTIVAIIMWIVYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKG 131
Query 127 TILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQ 185
+ RP++E + I+RGHL + G LG + DLP +TVA L YK G
Sbjct 132 RMYVRPIIEDYHTLTVTIIRGHLYMQGIKLGTGYSLSDLPAYVTVAKVSHLLTYKRGFLD 191
Query 186 RVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
++ SGFA Y + ++GNY+L + S + ALL
Sbjct 192 KIGDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|P09175|VME1_CVPFS Membrane protein OS=Porcine transmissible
gastroenteritis coronavirus (strain FS772/70) OX=11150 GN=M
PE=1 SV=1
Length=262
Score = 257 bits (657), Expect = 1e-85, Method: Composition-based stats.
Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)
Query 2 ADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVT 61
+ +L L WN + + +I +LQ+ + F+Y IK++ +WLLWP+
Sbjct 36 SACESCFNGGDLIWHLANWNFSWSIILIIFITVLQYGRPQFSWFVYGIKMLIMWLLWPIV 95
Query 62 LACFVLAAV--YRIN-WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
LA + A Y+++ ++ G++IA A + ++W+ YF+ S +L+ RT+S WSFNPE N
Sbjct 96 LALTIFNAYSEYQVSRYVMFGVSIAGAIVTFVLWIMYFVRSIQLYRRTKSWWSFNPEINA 155
Query 119 LLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVA-TSRTL 176
+L V G PL + +L G+L G + G +I +LPK + VA SRT+
Sbjct 156 ILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTI 215
Query 177 SYYKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
Y +G + + +G+A Y + + G+Y + + S+ LL
Sbjct 216 VYTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEQEKLL 259
>sp|Q9IKC7|VME1_CVRSD Membrane protein OS=Rat coronavirus (strain
681) OX=33740 GN=M PE=3 SV=1
Length=228
Score = 256 bits (653), Expect = 1e-85, Method: Composition-based stats.
Identities = 82/214 (38%), Positives = 127/214 (59%), Gaps = 1/214 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T + + L++WN ++G + L +LQF Y +R+ F+Y++K+I LWL+WP+T+ +
Sbjct 15 TADVAVRFLKEWNFLLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 74
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + GT+
Sbjct 75 CVYALNNVYLGFSIVFTIVSIVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDVKGTV 134
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A +RGHL + G LG + DLP +TVA L YK +V
Sbjct 135 YVRPIIEDYHTLTATNVRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 194
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLV 221
G SGFA Y + ++GNY+L ++ S +D L +
Sbjct 195 DGVSGFAVYVKSKVGNYRLPSNKPSGADTALLRI 228
>sp|Q9WCD1|VME1_CVRNJ Membrane protein (Fragment) OS=Rat coronavirus
(strain NJ) OX=231433 GN=M PE=3 SV=1
Length=222
Score = 255 bits (651), Expect = 3e-85, Method: Composition-based stats.
Identities = 82/214 (38%), Positives = 126/214 (59%), Gaps = 1/214 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T + + L++WN ++G + L +LQF Y +R+ F+Y++K+I LWL+WP+T+ +
Sbjct 9 TADVAVRFLKEWNFLLGIILLFITIILQFGYTSRSMFIYVVKMIILWLMWPLTIVLCIFN 68
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G +I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + GT+
Sbjct 69 CVYALNNVYLGFSIVFTIVSIVMWIMYFVNSIRLFIRTGSWWSFNPETNNLMCIDVKGTV 128
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A +RGHL + G LG + DLP +TVA L YK +V
Sbjct 129 YVRPIIEDYHTLTATNVRGHLYMQGVKLGTGFSLSDLPAYVTVAKVSHLCTYKRAFLDKV 188
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLV 221
G SGFA Y + ++GNY+L ++ S D L +
Sbjct 189 DGVSGFAVYVKSKVGNYRLPSNKPSGVDTALLRI 222
>sp|Q01455|VME1_CVHOC Membrane protein OS=Human coronavirus OC43
OX=31631 GN=M PE=1 SV=1
Length=230
Score = 254 bits (650), Expect = 5e-85, Method: Composition-based stats.
Identities = 87/213 (41%), Positives = 127/213 (60%), Gaps = 1/213 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
T +E K L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 14 TADEAIKFLKEWNFSLGIILLFITIILQFGYTSRSMFVYVIKMIILWLMWPLTIILTIFN 73
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
VY +N + G++I + +MW+ YF+ S RLF RT S WSFNPETN L+ + + GT+
Sbjct 74 CVYALNNVYLGLSIVFTIVAIIMWIVYFVNSIRLFIRTGSFWSFNPETNNLMCIDMKGTM 133
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + I+RGHL I G LG DLP +TVA L YK G R+
Sbjct 134 YVRPIIEDYHTLTVTIIRGHLYIQGIKLGTGYSWADLPAYMTVAKVTHLCTYKRGFLDRI 193
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
+ SGFA Y + ++GNY+L + S + ALL
Sbjct 194 SDTSGFAVYVKSKVGNYRLPSTQKGSGMDTALL 226
>sp|Q0ZME4|VME1_CVHN5 Membrane protein OS=Human coronavirus HKU1
(isolate N5) OX=443241 GN=M PE=3 SV=1
Length=223
Score = 253 bits (647), Expect = 9e-85, Method: Composition-based stats.
Identities = 78/212 (37%), Positives = 124/212 (58%), Gaps = 1/212 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
++ L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 10 NSDQAITFLKEWNFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFN 69
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
Y +N + G++I + ++W+ YF+ S RLF RT S WSFNPETN L+ + + G +
Sbjct 70 CFYALNNVFLGLSILFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGKM 129
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A ++RGHL I G LG + DLP +TVA + L YK ++
Sbjct 130 YVRPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKRAFLDKL 189
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIAL 219
+SGFA + + ++GNY+L + SS D L
Sbjct 190 DVNSGFAVFVKSKVGNYRLPSSKSSGMDTALL 221
>sp|Q14EA7|VME1_CVHN2 Membrane protein OS=Human coronavirus HKU1
(isolate N2) OX=443240 GN=M PE=3 SV=1
Length=223
Score = 253 bits (646), Expect = 1e-84, Method: Composition-based stats.
Identities = 79/212 (37%), Positives = 124/212 (58%), Gaps = 1/212 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
++ L++WN +G + L +LQF Y +R+ F+Y+IK+I LWL+WP+T+ +
Sbjct 10 NSDQAITFLKEWNFSLGVILLLITIILQFGYTSRSMFVYLIKMIILWLMWPLTIILTIFN 69
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
Y +N I G++I + ++W+ YF+ S RLF RT S WSFNPETN L+ + + G +
Sbjct 70 CFYALNNIFLGLSILFTIISIVIWILYFVNSIRLFIRTGSWWSFNPETNNLMCIDMKGKM 129
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVATSRTLSYYKLGASQRV 187
RP++E + A ++RGHL I G LG + DLP +TVA + L YK ++
Sbjct 130 YVRPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLADLPVYVTVAKVQVLCTYKRAFLDKL 189
Query 188 AGDSGFAAYSRYRIGNYKLNTDHSSSSDNIAL 219
+SGFA + + ++GNY+L + SS D L
Sbjct 190 DVNSGFAVFVKSKVGNYRLPSSKSSGMDTALL 221
>sp|P25878|VME1_FIPV Membrane protein OS=Feline coronavirus (strain
FIPV WSU-79/1146) OX=33734 GN=M PE=1 SV=1
Length=262
Score = 253 bits (646), Expect = 5e-84, Method: Composition-based stats.
Identities = 66/224 (29%), Positives = 114/224 (51%), Gaps = 5/224 (2%)
Query 2 ADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVT 61
+ +L L WN + + +I +LQ+ + +Y IK++ +WLLWP+
Sbjct 36 SRCQTCFERGDLIWHLANWNFSWSVILIVFITVLQYGRPQFSWLVYGIKMLIMWLLWPIV 95
Query 62 LACFVLAAV--YRIN-WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
LA + A Y+++ ++ G ++A A + +W+ YF+ S +L+ RT+S WSFNPETN
Sbjct 96 LALTIFNAYSEYQVSRYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNA 155
Query 119 LLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVATS-RTL 176
+L V G PL + + +L G+L G + G I+ LPK + +AT RT+
Sbjct 156 ILCVNALGRSYVLPLDGTPTGVTLTLLSGNLYAEGFKMAGGLTIEHLPKYVMIATPSRTI 215
Query 177 SYYKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
Y +G + +G+A Y + + G+Y + S++ LL
Sbjct 216 VYTLVGKQLKATTATGWAYYVKSKAGDYSTEARTDNLSEHEKLL 259
>sp|Q7T6S9|VME1_CVCBG Membrane protein OS=Canine coronavirus (strain
BGF10) OX=441619 GN=M PE=3 SV=1
Length=262
Score = 252 bits (643), Expect = 2e-83, Method: Composition-based stats.
Identities = 67/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)
Query 2 ADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVT 61
+ +L L WN + + +I +LQ+ + F+Y +K++ +WLLWP+
Sbjct 36 SVCALCFEGGDLVWHLANWNFSWSVILIVFITVLQYGRPQFSWFVYGVKMLIMWLLWPIV 95
Query 62 LACFVLAAV--YRIN-WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
LA + A Y ++ ++ G ++A A + ++W+ YF+ S +L+ RT+S WSFNPETN
Sbjct 96 LALTIFNAYSEYEVSRYVMFGFSVAGAIVTFILWIMYFVRSIQLYRRTKSWWSFNPETNA 155
Query 119 LLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVA-TSRTL 176
+L V G PL + +L G+L G + G +I +LPK + VA SRT+
Sbjct 156 ILCVSALGRSYVLPLEGVPTGVTLTLLSGNLYAEGFKIAGGMNIDNLPKYVMVALPSRTI 215
Query 177 SYYKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
Y +G + + +G+A Y + + G+Y + + S++ LL
Sbjct 216 VYTLVGKQLKASSATGWAYYVKSKAGDYSTDARTDTLSEHEKLL 259
>sp|P59771|VME1_PEDV7 Membrane protein OS=Porcine epidemic diarrhea
virus (strain CV777) OX=229032 GN=M PE=3 SV=1
Length=226
Score = 248 bits (633), Expect = 2e-82, Method: Composition-based stats.
Identities = 73/225 (32%), Positives = 125/225 (56%), Gaps = 7/225 (3%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
SNG+I V+E+ + L WN + + +LQ+ + + FLY +K+ LW+LWP+ LA
Sbjct 2 SNGSIPVDEVIEHLRNWNFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLA 61
Query 64 CFVL--AAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLN 121
+ A +++NW+ +I MAC+ ++W+ YF+ S RL+ RT S WSFNPET+ LL
Sbjct 62 LSLFDAWASFQVNWVFFAFSILMACITLMLWIMYFVNSIRLWRRTHSWWSFNPETDALLT 121
Query 122 VPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVAT-SRTLSYY 179
+ G + P+L + + +L G L + G+ + + LP +TVA + T+ Y
Sbjct 122 TSVMGRQVCIPVLGAPTGVTLTLLSGTLFVEGYKVATGVQVSQLPNFVTVAKATTTIVYG 181
Query 180 KLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSS---SSDNIALLV 221
++G S + +G+A Y R + G+Y ++ S+ S+ + LV
Sbjct 182 RVGRSVNASSGTGWAFYVRSKHGDYSAVSNPSAVLTDSEKVLHLV 226
>sp|P36299|VME1_CVCAI Membrane protein OS=Canine coronavirus (strain
Insavc-1) OX=36391 GN=M PE=3 SV=1
Length=262
Score = 248 bits (633), Expect = 5e-82, Method: Composition-based stats.
Identities = 66/223 (30%), Positives = 116/223 (52%), Gaps = 5/223 (2%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
+ +L L WN + + +I +LQ+ + F+ IK++ +WLLWP+ L
Sbjct 37 NCASCFETGDLIWHLANWNFSWSVILIIFITVLQYGRPQFSWFVCGIKMLIMWLLWPIVL 96
Query 63 ACFVLAAV--YRIN-WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNIL 119
A + A YR++ ++ G ++A A + ++W+ YF+ S +L+ RT+S WSFNPET+ +
Sbjct 97 ALTIFNAYLEYRVSRYVMFGFSVAGATVTFILWIMYFVRSIQLYRRTKSWWSFNPETSAI 156
Query 120 LNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHL-GRCDIKDLPKEITVATS-RTLS 177
L V G PL + +L G+L G + G +I +LPK + VA RT+
Sbjct 157 LCVSALGRSYVLPLEGVPTGVTLTLLSGNLCAEGFKIAGGMNIDNLPKYVMVALPVRTIV 216
Query 178 YYKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALL 220
Y +G + + +G+A Y + + G+Y + + S++ LL
Sbjct 217 YTLVGKKLKASSATGWAYYVKSKAGDYSTDARTDNLSEHEKLL 259
>sp|Q6Q1R9|VME1_CVHNL Membrane protein OS=Human coronavirus NL63
OX=277944 GN=M PE=3 SV=1
Length=226
Score = 238 bits (608), Expect = 9e-79, Method: Composition-based stats.
Identities = 64/222 (29%), Positives = 116/222 (52%), Gaps = 5/222 (2%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
SN ++ + E+ L WN + +I +LQ+ + +R LY +K+ LW LWP+ LA
Sbjct 2 SNSSVPLLEVYVHLRNWNFSWNLILTLFIVVLQYGHYKYSRLLYGLKMSVLWCLWPLVLA 61
Query 64 CFVLAAV--YRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLN 121
+ + ++W+ G +I M+ + +W+ YF+ SFRL+ R ++ W+FNPETN +++
Sbjct 62 LSIFDCFVNFNVDWVFFGFSILMSIITLCLWVMYFVNSFRLWRRVKTFWAFNPETNAIIS 121
Query 122 VPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLG-RCDIKDLPKEITVATS-RTLSYY 179
+ ++G P++ + + +L G L + GH + R + LPK + VAT T+
Sbjct 122 LQVYGHNYYLPVMAAPTGVTLTLLSGVLLVDGHKIATRVQVGQLPKYVIVATPSTTIVCD 181
Query 180 KLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSS-SSDNIALL 220
++G S +G+A Y R + G++ S+ LL
Sbjct 182 RVGRSVNETSQTGWAFYVRAKHGDFSGVASQEGVLSEREKLL 223
>sp|Q0Q463|VME1_BC512 Membrane protein OS=Bat coronavirus 512/2005
OX=693999 GN=M PE=3 SV=1
Length=227
Score = 236 bits (603), Expect = 6e-78, Method: Composition-based stats.
Identities = 72/226 (32%), Positives = 123/226 (54%), Gaps = 7/226 (3%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
SN ++ VEE+ K L WN + + +LQ+ + +R LY +K+ LWLLWP+ L
Sbjct 2 SSNQSVPVEEVIKHLRNWNFSWNIILTILLVVLQYGHYKYSRVLYGLKMAILWLLWPLVL 61
Query 63 ACFVL--AAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILL 120
A + A + +NW+ +I MAC+ ++W+ YF+ S RL+ RT S WS+NPET+ +L
Sbjct 62 ALSIFDAWASFNVNWVFFAFSILMACVTAVLWIMYFVNSIRLWRRTHSWWSYNPETDSIL 121
Query 121 NVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVAT-SRTLSY 178
+V + G + P+L + + +L G L + G+ + + +LP +TVA S T+ Y
Sbjct 122 SVSVLGRHVCLPILGAPTGVTLTLLNGTLLVEGYQVATGVQVNNLPGYVTVAKASTTIVY 181
Query 179 YKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSS---SSDNIALLV 221
++G S +G+A + + + G+Y + + S+ I LV
Sbjct 182 QRVGRSMNANSSTGWAFFVKSKHGDYYAAANPTEVVTDSEKILHLV 227
>sp|P59770|VME1_PEDVB Membrane protein OS=Porcine epidemic diarrhea
virus (strain Br1/87) OX=229033 GN=M PE=3 SV=1
Length=226
Score = 236 bits (602), Expect = 8e-78, Method: Composition-based stats.
Identities = 73/225 (32%), Positives = 125/225 (56%), Gaps = 7/225 (3%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
SNG+I V+E+ + L WN + + +LQ+ + + FLY +K+ LW+LWP+ LA
Sbjct 2 SNGSIPVDEVIEHLRNWNFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLA 61
Query 64 CFVL--AAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLN 121
+ A +++NW+ +I MAC+ ++W+ YF+ S RL+ RT S WSFNPET+ LL
Sbjct 62 LSLFDAWASFQVNWVFFAFSILMACITLMLWIMYFVNSIRLWRRTHSWWSFNPETDALLT 121
Query 122 VPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGR-CDIKDLPKEITVAT-SRTLSYY 179
+ G + P+L + + +L G L + G+ + + LP +TVA + T+ Y
Sbjct 122 TSVMGRQVCIPVLGAPTGVTLTLLSGTLLVEGYKVATGVQVSQLPNFVTVAKATTTIVYG 181
Query 180 KLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSS---SSDNIALLV 221
++G S + +G+A Y R + G+Y ++ S+ S+ + LV
Sbjct 182 RVGRSVNASSGTGWAFYVRSKHGDYSAVSNPSAVLTDSEKVPHLV 226
>sp|P69606|VME1_IBVM Membrane protein OS=Avian infectious bronchitis
virus (strain M41) OX=11127 GN=M PE=2 SV=1
Length=225
Score = 217 bits (554), Expect = 1e-70, Method: Composition-based stats.
Identities = 67/204 (33%), Positives = 108/204 (53%), Gaps = 8/204 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ +Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 182 GASQRVAGDSG-----FAAYSRYR 200
Q+ GD FA + +
Sbjct 184 --VQKYTGDQSGNKKRFATFVYAK 205
>sp|P69607|VME1_IBVH5 Membrane protein OS=Avian infectious bronchitis
virus (strain H52) OX=231425 GN=M PE=2 SV=1
Length=225
Score = 217 bits (554), Expect = 1e-70, Method: Composition-based stats.
Identities = 67/204 (33%), Positives = 108/204 (53%), Gaps = 8/204 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ +Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 182 GASQRVAGDSG-----FAAYSRYR 200
Q+ GD FA + +
Sbjct 184 --VQKYTGDQSGNKKRFATFVYAK 205
>sp|P69604|VME1_IBVH1 Membrane protein OS=Avian infectious bronchitis
virus (strain H120) OX=231424 GN=M PE=3 SV=1
Length=225
Score = 217 bits (553), Expect = 2e-70, Method: Composition-based stats.
Identities = 64/202 (32%), Positives = 105/202 (52%), Gaps = 4/202 (2%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ +Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 182 GAS---QRVAGDSGFAAYSRYR 200
+ FA + +
Sbjct 184 VQKYIGDQSGNKKRFATFVYAK 205
>sp|P69603|VME1_IBVD1 Membrane protein OS=Avian infectious bronchitis
virus (strain D1466) OX=231472 GN=M PE=3 SV=1
Length=225
Score = 217 bits (553), Expect = 2e-70, Method: Composition-based stats.
Identities = 64/202 (32%), Positives = 105/202 (52%), Gaps = 4/202 (2%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ +Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 182 GAS---QRVAGDSGFAAYSRYR 200
+ FA + +
Sbjct 184 VQKYIGDQSGNKKRFATFVYAK 205
>sp|P69605|VME1_IBV41 Membrane protein OS=Avian infectious bronchitis
virus (strain D41) OX=236988 GN=M PE=3 SV=1
Length=225
Score = 217 bits (553), Expect = 2e-70, Method: Composition-based stats.
Identities = 64/202 (32%), Positives = 105/202 (52%), Gaps = 4/202 (2%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ +Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 182 GAS---QRVAGDSGFAAYSRYR 200
+ FA + +
Sbjct 184 VQKYIGDQSGNKKRFATFVYAK 205
>sp|Q9J3N8|VME1_IBVDE Membrane protein OS=Avian infectious bronchitis
virus (strain DE072) OX=233265 GN=M PE=3 SV=2
Length=225
Score = 217 bits (553), Expect = 2e-70, Method: Composition-based stats.
Identities = 67/204 (33%), Positives = 107/204 (52%), Gaps = 8/204 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++F+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRSKFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ +Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPTVLSPIIKNGFLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 182 GASQRVAGDSG-----FAAYSRYR 200
Q+ GD FA + +
Sbjct 184 --VQKYTGDQSGNKKRFATFVYAK 205
>sp|P11222|VME1_IBVB2 Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette M42) OX=11123 GN=M PE=1 SV=1
Length=225
Score = 215 bits (547), Expect = 2e-69, Method: Composition-based stats.
Identities = 65/204 (32%), Positives = 106/204 (52%), Gaps = 8/204 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++ +Y +K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ +Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 182 GASQRVAGDSG-----FAAYSRYR 200
Q+ GD FA + +
Sbjct 184 --VQKYTGDQSGNKKRFATFVYAK 205
>sp|P69602|VME1_IBVBC Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette CK) OX=160235 GN=M PE=3 SV=1
Length=225
Score = 214 bits (546), Expect = 3e-69, Method: Composition-based stats.
Identities = 65/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++ +Y +K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCTYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 182 GASQRVAGDSG-----FAAYSRYR 200
Q+ GD FA + +
Sbjct 184 --VQKYTGDQSGNKKRFATFVYAK 205
>sp|P69601|VME1_IBVB Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette) OX=11122 GN=M PE=3 SV=1
Length=225
Score = 214 bits (546), Expect = 3e-69, Method: Composition-based stats.
Identities = 65/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R++ +Y +K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCTYPPNTGGLVAAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 182 GASQRVAGDSG-----FAAYSRYR 200
Q+ GD FA + +
Sbjct 184 --VQKYTGDQSGNKKRFATFVYAK 205
>sp|P05136|VME1_IBV6 Membrane protein OS=Avian infectious bronchitis
virus (strain 6/82) OX=11121 GN=M PE=3 SV=1
Length=225
Score = 214 bits (545), Expect = 3e-69, Method: Composition-based stats.
Identities = 63/202 (31%), Positives = 103/202 (51%), Gaps = 4/202 (2%)
Query 4 SNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLA 63
+N T+ E+ +L +++NL + L LLQ+ YA RN+ +YI+K+I LW WP+ +A
Sbjct 5 TNCTLGTEQAVQLFKEYNLFVTAFLLFLTILLQYGYATRNKVIYILKMIVLWCFWPLNIA 64
Query 64 CFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVP 123
++ +Y N AI + L ++ Y+I SFRLF R RS W+FNPE+N + ++
Sbjct 65 VGAISCIYPPNTGGLVAAIILTVFACLSFIGYWIQSFRLFKRCRSWWAFNPESNAVGSIL 124
Query 124 LHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLG 182
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 125 LTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRMV 184
Query 183 AS---QRVAGDSGFAAYSRYRI 201
+ FA + +
Sbjct 185 QRYTGDQSGNKKRFATFIYVKH 206
>sp|Q91QS9|VME1_IBVBU Membrane protein OS=Avian infectious bronchitis
virus (strain Beaudette US) OX=160750 GN=M PE=3 SV=1
Length=225
Score = 213 bits (543), Expect = 6e-69, Method: Composition-based stats.
Identities = 65/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R + +Y +K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVQLFKEYNLFITAFLLFLTIILQYGYATRTKVIYTLKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ Y N +AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCTYPPNTGGLVVAIILTVFACLSFVGYWIQSIRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLSPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM 183
Query 182 GASQRVAGDSG-----FAAYSRYR 200
Q+ GD FA + +
Sbjct 184 --VQKYTGDQSGNKKRFATFVYAK 205
>sp|Q910E2|VME1_IBVG Membrane protein OS=Avian infectious bronchitis
virus (strain Gray) OX=31624 GN=M PE=2 SV=1
Length=223
Score = 211 bits (538), Expect = 4e-68, Method: Composition-based stats.
Identities = 68/202 (34%), Positives = 104/202 (51%), Gaps = 8/202 (4%)
Query 5 NGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLAC 64
N T+ E+ L +++NL I L LLQ+ YA R+R +YI+K+I LW WP+ +A
Sbjct 4 NCTLDSEQAVLLFKEYNLFITAFLLFLTILLQYGYATRSRTIYILKMIVLWCFWPLNIAV 63
Query 65 FVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPL 124
V++ +Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++ L
Sbjct 64 GVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSCRLFKRCRSWWSFNPESNAVGSILL 123
Query 125 HGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGA 183
+ES +V+ +I G L G L +C+ LPK+I V T + Y++
Sbjct 124 TNGQQCNFAIESVPMVLAPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTPDRRNIYRM-- 181
Query 184 SQRVAGDSG-----FAAYSRYR 200
Q+ GD FA + +
Sbjct 182 VQKYTGDQSGNKKRFATFVYAK 203
>sp|P12649|VME1_IBVK Membrane protein OS=Avian infectious bronchitis
virus (strain KB8523) OX=11126 GN=M PE=3 SV=1
Length=225
Score = 211 bits (537), Expect = 6e-68, Method: Composition-based stats.
Identities = 68/204 (33%), Positives = 108/204 (53%), Gaps = 8/204 (4%)
Query 3 DSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTL 62
++N T+ E+ +L +++NL I L +LQ+ YA R RF+YI+K+I LW WP+ +
Sbjct 4 ETNCTLDFEQSVELFKEYNLFITAFLLFLTIILQYGYATRIRFIYILKMIVLWCFWPLNI 63
Query 63 ACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNV 122
A V++ +Y N AI + L ++ Y+I S RLF R RS WSFNPE+N + ++
Sbjct 64 AVGVISCIYPPNTGGLVAAIILTVFACLSFVGYWIQSCRLFKRCRSWWSFNPESNAVGSI 123
Query 123 PLHGTILTRPLLES-ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKL 181
L +ES +V+ +I G L G L +C+ LPK+I V T+ + Y++
Sbjct 124 LLTNGQQCNFAIESVPMVLAPIIKNGVLYCEGQWLAKCEPDHLPKDIFVCTADRRNIYRM 183
Query 182 GASQRVAGDSG-----FAAYSRYR 200
Q+ GD FA + +
Sbjct 184 --VQKYTGDQSGNKKRFATFVYAK 205
>sp|P15422|VME1_CVH22 Membrane protein OS=Human coronavirus 229E
OX=11137 GN=M PE=3 SV=3
Length=225
Score = 208 bits (529), Expect = 7e-67, Method: Composition-based stats.
Identities = 69/225 (31%), Positives = 117/225 (52%), Gaps = 8/225 (4%)
Query 1 MADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPV 60
M++ N T ++ L+ WN + +I +LQF + +R Y +K++ LWLLWP+
Sbjct 1 MSNDNCT---GDIVTHLKNWNFGWNVILTIFIVILQFGHYKYSRLFYGLKMLVLWLLWPL 57
Query 61 TLACFVL--AAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNI 118
LA + A + NW + MA +MW+ YF SFRLF R R+ W++NPE N
Sbjct 58 VLALSIFDTWANWDSNWAFVAFSFFMAVSTLVMWVMYFANSFRLFRRARTFWAWNPEVNA 117
Query 119 LLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLG-RCDIKDLPKEITVA-TSRTL 176
+ + G +P+ ++ I +L G L + GH L + +LP+ +TVA S T+
Sbjct 118 ITVTTVLGQTYYQPIQQAPTGITVTLLSGVLYVDGHRLASGVQVHNLPEYMTVAVPSTTI 177
Query 177 SYYKLGASQRVAGDSGFAAYSRYRIGNYK-LNTDHSSSSDNIALL 220
Y ++G S +G+ Y R + G++ +++ S+ ++N LL
Sbjct 178 IYSRVGRSVNSQNSTGWVFYVRVKHGDFSAVSSPMSNMTENERLL 222
>sp|F4JT80|RPP2B_ARATH Disease resistance protein RPP2B OS=Arabidopsis
thaliana OX=3702 GN=RPP2B PE=1 SV=2
Length=1207
Score = 37.6 bits (86), Expect = 0.082, Method: Composition-based stats.
Identities = 12/53 (23%), Positives = 25/53 (47%), Gaps = 2/53 (4%)
Query 114 PETNILLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPK 166
PE + L N+ + RP+++ + + G+ ++ +L C+I LP
Sbjct 808 PEMSCLSNLKIC--SFCRPVIDDSTGLVVLPFSGNSFLSDLYLTNCNIDKLPD 858
>sp|Q9FLT4|AB10A_ARATH ABC transporter A family member 10 OS=Arabidopsis
thaliana OX=3702 GN=ABCA10 PE=1 SV=2
Length=909
Score = 31.9 bits (71), Expect = 5.6, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query 22 LVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWL--LWPVTLACFV-LAAVYRINWITG 78
L L + L Y + R I+K+ L + W ++ A F+ L+ Y I+ +
Sbjct 329 FTWVVLLLFPVILTSLVYEKQERLRIIMKMHGLGIGPYWMISYAYFLTLSMFYVISLVIF 388
Query 79 GIAIAMACLVG----LMWLSYFI 97
G AI + + ++ YFI
Sbjct 389 GSAIGLRYFRLNDYSVQFIFYFI 411
Lambda K H a alpha
0.318 0.145 0.437 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0443 0.140 1.90 42.6 43.6
Effective search space used: 15287642784
Search has CONVERGED!
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40