PSIBLAST 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: uniprot_sprot.fasta 570,830 sequences; 206,533,160 total letters Results from round 1 Query= YP_009724392.1 envelope protein [Severe acute respiratory syndrome coronavirus 2] Length=75 Score E Sequences producing significant alignments: (Bits) Value sp|P0DTC4|VEMP_SARS2 Envelope small membrane protein OS=Severe ac... 144 5e-46 sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe acu... 134 6e-42 sp|Q3I5J3|VEMP_BCRP3 Envelope small membrane protein OS=Bat coron... 134 6e-42 sp|Q3LZW9|VEMP_BCHK3 Envelope small membrane protein OS=Bat coron... 134 6e-42 sp|Q0Q473|VEMP_BC279 Envelope small membrane protein OS=Bat coron... 132 2e-41 sp|Q0Q4E8|VEMP_BC133 Envelope small membrane protein OS=Bat coron... 56.6 2e-11 sp|A3EX99|VEMP_BCHK4 Envelope small membrane protein OS=Bat coron... 56.2 4e-11 sp|K9N5R3|VEMP_MERS1 Envelope small membrane protein OS=Middle Ea... 45.1 1e-06 sp|A3EXD5|VEMP_BCHK5 Envelope small membrane protein OS=Bat coron... 42.7 8e-06 sp|Q0ZME5|VEMP_CVHN5 Envelope small membrane protein OS=Human cor... 40.8 4e-05 sp|Q14EA8|VEMP_CVHN2 Envelope small membrane protein OS=Human cor... 40.8 4e-05 sp|Q9IKC8|VEMP_CVRSD Envelope small membrane protein OS=Rat coron... 34.7 0.011 sp|P0C2R0|VEMP_CVMA5 Envelope small membrane protein OS=Murine co... 33.5 0.032 sp|Q5MQC8|VEMP_CVHN1 Envelope small membrane protein OS=Human cor... 32.7 0.069 sp|P29076|VEMP_CVMS Envelope small membrane protein OS=Murine cor... 32.0 0.12 sp|P06591|VEMP_CVMJH Envelope small membrane protein OS=Murine co... 31.2 0.25 sp|P0C2Q7|VEMP_CVBQ Envelope small membrane protein OS=Bovine cor... 29.6 0.85 sp|P0C2Q6|VEMP_CVBON Envelope small membrane protein OS=Bovine co... 29.6 0.85 sp|P0C2Q5|VEMP_CVBOK Envelope small membrane protein OS=Bovine co... 29.6 0.85 sp|P0C2Q4|VEMP_CVBLY Envelope small membrane protein OS=Bovine co... 29.6 0.85 sp|P0C2Q3|VEMP_CVBLU Envelope small membrane protein OS=Bovine co... 29.6 0.85 sp|P0C2Q2|VEMP_CVBLS Envelope small membrane protein OS=Bovine co... 29.6 0.85 sp|P15775|VEMP_CVBF Envelope small membrane protein OS=Bovine cor... 29.6 0.85 sp|P0C2Q1|VEMP_CVBEN Envelope small membrane protein OS=Bovine co... 29.6 0.85 sp|P0C2Q9|VEMP_CVPIA Envelope small membrane protein OS=Porcine h... 29.6 0.95 sp|P0C2Q8|VEMP_CVP67 Envelope small membrane protein OS=Porcine h... 29.6 0.95 sp|Q04854|VEMP_CVHOC Envelope small membrane protein OS=Human cor... 29.3 1.5 sp|P15779|VEMP_CVBM Envelope small membrane protein OS=Bovine cor... 28.9 2.2 sp|P19741|VEMP_CVH22 Envelope small membrane protein OS=Human cor... 27.7 4.2 sp|A3EXG8|VEMP_BCHK9 Envelope small membrane protein OS=Bat coron... 27.7 4.6 sp|P36696|VEMP_CVCAI Envelope small membrane protein OS=Canine co... 26.9 8.4 >sp|P0DTC4|VEMP_SARS2 Envelope small membrane protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=E PE=1 SV=1 Length=75 Score = 144 bits (362), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 75/75 (100%), Positives = 75/75 (100%), Gaps = 0/75 (0%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 Query 61 RVKNLNSSRVPDLLV 75 RVKNLNSSRVPDLLV Sbjct 61 RVKNLNSSRVPDLLV 75 >sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=E PE=1 SV=1 Length=76 Score = 134 bits (336), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 72/76 (95%), Positives = 73/76 (96%), Gaps = 1/76 (1%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKP+ YVYS Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60 Query 61 RVKNLNSSR-VPDLLV 75 RVKNLNSS VPDLLV Sbjct 61 RVKNLNSSEGVPDLLV 76 >sp|Q3I5J3|VEMP_BCRP3 Envelope small membrane protein OS=Bat coronavirus Rp3/2004 OX=349344 GN=E PE=3 SV=1 Length=76 Score = 134 bits (336), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 72/76 (95%), Positives = 73/76 (96%), Gaps = 1/76 (1%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKP+ YVYS Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60 Query 61 RVKNLNSSR-VPDLLV 75 RVKNLNSS VPDLLV Sbjct 61 RVKNLNSSEGVPDLLV 76 >sp|Q3LZW9|VEMP_BCHK3 Envelope small membrane protein OS=Bat coronavirus HKU3 OX=442736 GN=E PE=3 SV=1 Length=76 Score = 134 bits (336), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 72/76 (95%), Positives = 73/76 (96%), Gaps = 1/76 (1%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKP+ YVYS Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60 Query 61 RVKNLNSSR-VPDLLV 75 RVKNLNSS VPDLLV Sbjct 61 RVKNLNSSEGVPDLLV 76 >sp|Q0Q473|VEMP_BC279 Envelope small membrane protein OS=Bat coronavirus 279/2005 OX=389167 GN=E PE=3 SV=1 Length=76 Score = 132 bits (332), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 71/76 (93%), Positives = 72/76 (95%), Gaps = 1/76 (1%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MYSFVSEETGTLIVNSVLLF AFVVFLLVTLAILTALRLCAYCCNIVNVSLVKP+ YVYS Sbjct 1 MYSFVSEETGTLIVNSVLLFFAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60 Query 61 RVKNLNSSR-VPDLLV 75 RVKNLNSS VPDLLV Sbjct 61 RVKNLNSSEGVPDLLV 76 >sp|Q0Q4E8|VEMP_BC133 Envelope small membrane protein OS=Bat coronavirus 133/2005 OX=389230 GN=E PE=3 SV=1 Length=82 Score = 56.6 bits (135), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/75 (43%), Positives = 45/75 (60%), Gaps = 4/75 (5%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M FV E+ GT+IVN +L + + LLV LA+LTA+RLC C + VN L P+FY+Y+ Sbjct 1 MLPFVHEQIGTIIVNFFILTVVCAITLLVCLAVLTAIRLCVQCASGVNTLLFVPAFYIYN 60 Query 61 RVKN----LNSSRVP 71 +N +R P Sbjct 61 TGRNAYFKFQENRPP 75 >sp|A3EX99|VEMP_BCHK4 Envelope small membrane protein OS=Bat coronavirus HKU4 OX=694007 GN=E PE=3 SV=1 Length=82 Score = 56.2 bits (134), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/75 (43%), Positives = 45/75 (60%), Gaps = 4/75 (5%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M FV E+ GT+IVN +L + + L+V LAILTA+RLC C + VN L P+FY+Y+ Sbjct 1 MLPFVHEQIGTIIVNFFILTVVCAITLVVCLAILTAIRLCVQCASGVNTLLFVPAFYIYN 60 Query 61 RVKN----LNSSRVP 71 +N +R P Sbjct 61 TGRNAYFKFQENRPP 75 >sp|K9N5R3|VEMP_MERS1 Envelope small membrane protein OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=E PE=1 SV=1 Length=82 Score = 45.1 bits (105), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 38/75 (51%), Gaps = 4/75 (5%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M FV E G IVN + + + LLV +A LTA RLC C N LV+P+ Y+Y+ Sbjct 1 MLPFVQERIGLFIVNFFIFTVVCAITLLVCMAFLTATRLCVQCMTGFNTLLVQPALYLYN 60 Query 61 RVKN----LNSSRVP 71 ++ S+ P Sbjct 61 TGRSVYVKFQDSKPP 75 >sp|A3EXD5|VEMP_BCHK5 Envelope small membrane protein OS=Bat coronavirus HKU5 OX=694008 GN=E PE=3 SV=1 Length=82 Score = 42.7 bits (99), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 0/60 (0%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M FV E+ G IVN +L + V L+V LAILTA+RLC C + + + P+ ++Y+ Sbjct 1 MLPFVQEQIGAFIVNFFILSVVCAVTLVVCLAILTAIRLCVQCVSGCHTLVFLPAVHIYN 60 >sp|Q0ZME5|VEMP_CVHN5 Envelope small membrane protein OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=E PE=3 SV=1 Length=82 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/61 (33%), Positives = 34/61 (56%), Gaps = 0/61 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + L L+ V+FL+ +A+L ++LC C N+ ++ PS YVY+R + L Sbjct 8 DTAWYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPSAYVYNRGRQLYK 67 Query 68 S 68 S Sbjct 68 S 68 >sp|Q14EA8|VEMP_CVHN2 Envelope small membrane protein OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=E PE=3 SV=1 Length=82 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/61 (33%), Positives = 34/61 (56%), Gaps = 0/61 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + L L+ V+FL+ +A+L ++LC C N+ ++ PS YVY+R + L Sbjct 8 DTAWYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPSAYVYNRGRQLYK 67 Query 68 S 68 S Sbjct 68 S 68 >sp|Q9IKC8|VEMP_CVRSD Envelope small membrane protein OS=Rat coronavirus (strain 681) OX=33740 GN=E PE=3 SV=1 Length=88 Score = 34.7 bits (78), Expect = 0.011, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 0/38 (0%) Query 28 LVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++ +A L +++LC C + N L+ PS YVY+R K L Sbjct 28 IIVVAFLASIKLCIQLCGLCNTLLLSPSIYVYNRSKQL 65 >sp|P0C2R0|VEMP_CVMA5 Envelope small membrane protein OS=Murine coronavirus (strain A59) OX=11142 GN=E PE=1 SV=1 Length=83 Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (59%), Gaps = 3/46 (7%) Query 23 FVVFLLVTL---AILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 F V L+VT+ A L +++LC C + N ++ PS Y+Y R K L Sbjct 20 FAVCLMVTIIVVAFLASIKLCIQLCGLCNTLVLSPSIYLYDRSKQL 65 >sp|Q5MQC8|VEMP_CVHN1 Envelope small membrane protein OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=E PE=3 SV=1 Length=82 Score = 32.7 bits (73), Expect = 0.069, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 0/61 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T I ++L L ++ L+ +A L ++LC C N ++ PS YVY R L Sbjct 8 DTAWYIGQILVLVLFCLISLIFVVAFLATIKLCMQLCGFCNFFIISPSAYVYKRGMQLYK 67 Query 68 S 68 S Sbjct 68 S 68 >sp|P29076|VEMP_CVMS Envelope small membrane protein OS=Murine coronavirus (strain S) OX=11145 GN=E PE=3 SV=1 Length=88 Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 30/53 (57%), Gaps = 1/53 (2%) Query 14 VNSVLLFLAFVVFLLVTL-AILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 V ++ +A + + +T+ A L +++LC C + N ++ PS Y+Y R K L Sbjct 13 VGQIIFIVAVCLMVTITVVAFLASIKLCIQLCGLCNTLVLSPSIYLYDRSKQL 65 >sp|P06591|VEMP_CVMJH Envelope small membrane protein OS=Murine coronavirus (strain JHM) OX=11144 GN=E PE=3 SV=1 Length=88 Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 23/38 (61%), Gaps = 0/38 (0%) Query 28 LVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++ +A L +++ C C + N L+ PS Y+Y+R K L Sbjct 28 IIVVAFLASIKRCIQLCGLCNTLLLSPSIYLYNRSKQL 65 >sp|P0C2Q7|VEMP_CVBQ Envelope small membrane protein OS=Bovine coronavirus (strain Quebec) OX=11133 GN=E PE=3 SV=1 Length=84 Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N ++ PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|P0C2Q6|VEMP_CVBON Envelope small membrane protein OS=Bovine coronavirus (strain Ontario) OX=231422 GN=E PE=3 SV=1 Length=84 Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N ++ PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|P0C2Q5|VEMP_CVBOK Envelope small membrane protein OS=Bovine coronavirus (strain OK-0514) OX=231432 GN=E PE=3 SV=1 Length=84 Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N ++ PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|P0C2Q4|VEMP_CVBLY Envelope small membrane protein OS=Bovine coronavirus (strain LY-138) OX=11131 GN=E PE=3 SV=1 Length=84 Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N ++ PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|P0C2Q3|VEMP_CVBLU Envelope small membrane protein OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=E PE=3 SV=1 Length=84 Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N ++ PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|P0C2Q2|VEMP_CVBLS Envelope small membrane protein OS=Bovine coronavirus (strain LSU-94LSS-051) OX=233261 GN=E PE=3 SV=1 Length=84 Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N ++ PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|P15775|VEMP_CVBF Envelope small membrane protein OS=Bovine coronavirus (strain F15) OX=11129 GN=E PE=3 SV=1 Length=84 Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N ++ PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|P0C2Q1|VEMP_CVBEN Envelope small membrane protein OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=E PE=3 SV=1 Length=84 Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N ++ PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|P0C2Q9|VEMP_CVPIA Envelope small membrane protein OS=Porcine hemagglutinating encephalomyelitis virus (strain IAF-404) OX=230236 GN=E PE=3 SV=1 Length=84 Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N ++ PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|P0C2Q8|VEMP_CVP67 Envelope small membrane protein OS=Porcine hemagglutinating encephalomyelitis virus (strain 67N) OX=230237 GN=E PE=3 SV=1 Length=84 Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 22/39 (56%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N ++ PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|Q04854|VEMP_CVHOC Envelope small membrane protein OS=Human coronavirus OC43 OX=31631 GN=E PE=3 SV=1 Length=84 Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust. Identities = 12/38 (32%), Positives = 21/38 (55%), Gaps = 0/38 (0%) Query 28 LVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 +V +A L +LC C + N ++ PS YV++R + Sbjct 30 IVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67 >sp|P15779|VEMP_CVBM Envelope small membrane protein OS=Bovine coronavirus (strain Mebus) OX=11132 GN=E PE=3 SV=1 Length=84 Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust. Identities = 12/39 (31%), Positives = 21/39 (54%), Gaps = 0/39 (0%) Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNL 65 ++V +A L +LC C + N + PS YV++R + Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLGLSPSIYVFNRGRQF 67 >sp|P19741|VEMP_CVH22 Envelope small membrane protein OS=Human coronavirus 229E OX=11137 GN=E PE=3 SV=1 Length=77 Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYC---CNIVNVSLVKPSFYVYSRVKN 64 + L+VN +L + +V LLV + I+ ++LC C CN +K +++Y + Sbjct 7 DDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMH 66 Query 65 LN--SSRVPD 72 ++ RV D Sbjct 67 IDPFPKRVID 76 >sp|A3EXG8|VEMP_BCHK9 Envelope small membrane protein OS=Bat coronavirus HKU9 OX=694006 GN=E PE=3 SV=1 Length=79 Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 0/64 (0%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MY V LI N ++L + ++ ++V A+L L+ C V + KP+ VY+ Sbjct 1 MYDIVGTNNSILIANVLVLIIICLLVVIVGCALLLILQFVFGVCGFVFKFVCKPTILVYN 60 Query 61 RVKN 64 + +N Sbjct 61 KFRN 64 >sp|P36696|VEMP_CVCAI Envelope small membrane protein OS=Canine coronavirus (strain Insavc-1) OX=36391 GN=E PE=3 SV=1 Length=82 Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust. Identities = 12/38 (32%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Query 37 LRLCAYCCNIVNVSLVKPSFYVYSRVKNLNSSRV--PD 72 ++LC CCN+ ++ P+ + Y KN R PD Sbjct 40 IKLCMVCCNLGRTVIIVPARHAYDAYKNFMQIRAYNPD 77 Lambda K H a alpha 0.331 0.142 0.407 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5227974420 Results from round 2 Query= YP_009724392.1 envelope protein [Severe acute respiratory syndrome coronavirus 2] Length=75 Score E Sequences producing significant alignments: (Bits) Value Sequences used in model and found again: sp|Q0Q4E8|VEMP_BC133 Envelope small membrane protein OS=Bat coron... 77.3 2e-19 sp|A3EX99|VEMP_BCHK4 Envelope small membrane protein OS=Bat coron... 77.3 2e-19 sp|A3EXD5|VEMP_BCHK5 Envelope small membrane protein OS=Bat coron... 74.9 1e-18 sp|K9N5R3|VEMP_MERS1 Envelope small membrane protein OS=Middle Ea... 74.6 2e-18 sp|P0DTC4|VEMP_SARS2 Envelope small membrane protein OS=Severe ac... 70.7 7e-17 sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe acu... 66.5 3e-15 sp|Q3I5J3|VEMP_BCRP3 Envelope small membrane protein OS=Bat coron... 66.5 3e-15 sp|Q3LZW9|VEMP_BCHK3 Envelope small membrane protein OS=Bat coron... 66.5 3e-15 sp|Q0Q473|VEMP_BC279 Envelope small membrane protein OS=Bat coron... 65.7 7e-15 sp|Q0ZME5|VEMP_CVHN5 Envelope small membrane protein OS=Human cor... 62.6 1e-13 sp|Q14EA8|VEMP_CVHN2 Envelope small membrane protein OS=Human cor... 62.6 1e-13 Sequences not found previously or not previously below threshold: sp|Q5MQC8|VEMP_CVHN1 Envelope small membrane protein OS=Human cor... 53.8 4e-10 sp|P0C2Q9|VEMP_CVPIA Envelope small membrane protein OS=Porcine h... 51.1 4e-09 sp|P0C2Q8|VEMP_CVP67 Envelope small membrane protein OS=Porcine h... 51.1 4e-09 sp|P0C2Q7|VEMP_CVBQ Envelope small membrane protein OS=Bovine cor... 51.1 4e-09 sp|P0C2Q6|VEMP_CVBON Envelope small membrane protein OS=Bovine co... 51.1 4e-09 sp|P0C2Q5|VEMP_CVBOK Envelope small membrane protein OS=Bovine co... 51.1 4e-09 sp|P0C2Q4|VEMP_CVBLY Envelope small membrane protein OS=Bovine co... 51.1 4e-09 sp|P0C2Q3|VEMP_CVBLU Envelope small membrane protein OS=Bovine co... 51.1 4e-09 sp|P0C2Q2|VEMP_CVBLS Envelope small membrane protein OS=Bovine co... 51.1 4e-09 sp|P15775|VEMP_CVBF Envelope small membrane protein OS=Bovine cor... 51.1 4e-09 sp|P0C2Q1|VEMP_CVBEN Envelope small membrane protein OS=Bovine co... 51.1 4e-09 sp|P15779|VEMP_CVBM Envelope small membrane protein OS=Bovine cor... 51.1 5e-09 sp|Q04854|VEMP_CVHOC Envelope small membrane protein OS=Human cor... 50.7 6e-09 sp|P06591|VEMP_CVMJH Envelope small membrane protein OS=Murine co... 50.7 6e-09 sp|Q9IKC8|VEMP_CVRSD Envelope small membrane protein OS=Rat coron... 49.9 1e-08 sp|P0C2R0|VEMP_CVMA5 Envelope small membrane protein OS=Murine co... 49.5 2e-08 sp|P29076|VEMP_CVMS Envelope small membrane protein OS=Murine cor... 49.1 2e-08 sp|A3EXG8|VEMP_BCHK9 Envelope small membrane protein OS=Bat coron... 28.7 2.0 sp|P19741|VEMP_CVH22 Envelope small membrane protein OS=Human cor... 28.3 2.8 sp|Q10426|RIK1_SCHPO Chromatin modification-related protein rik1 ... 28.7 4.6 sp|Q52PA5|VEMP_FIPV Envelope small membrane protein OS=Feline cor... 27.6 5.4 >sp|Q0Q4E8|VEMP_BC133 Envelope small membrane protein OS=Bat coronavirus 133/2005 OX=389230 GN=E PE=3 SV=1 Length=82 Score = 77.3 bits (189), Expect = 2e-19, Method: Composition-based stats. Identities = 32/75 (43%), Positives = 45/75 (60%), Gaps = 4/75 (5%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M FV E+ GT+IVN +L + + LLV LA+LTA+RLC C + VN L P+FY+Y+ Sbjct 1 MLPFVHEQIGTIIVNFFILTVVCAITLLVCLAVLTAIRLCVQCASGVNTLLFVPAFYIYN 60 Query 61 RVKN----LNSSRVP 71 +N +R P Sbjct 61 TGRNAYFKFQENRPP 75 >sp|A3EX99|VEMP_BCHK4 Envelope small membrane protein OS=Bat coronavirus HKU4 OX=694007 GN=E PE=3 SV=1 Length=82 Score = 77.3 bits (189), Expect = 2e-19, Method: Composition-based stats. Identities = 32/75 (43%), Positives = 45/75 (60%), Gaps = 4/75 (5%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M FV E+ GT+IVN +L + + L+V LAILTA+RLC C + VN L P+FY+Y+ Sbjct 1 MLPFVHEQIGTIIVNFFILTVVCAITLVVCLAILTAIRLCVQCASGVNTLLFVPAFYIYN 60 Query 61 RVKN----LNSSRVP 71 +N +R P Sbjct 61 TGRNAYFKFQENRPP 75 >sp|A3EXD5|VEMP_BCHK5 Envelope small membrane protein OS=Bat coronavirus HKU5 OX=694008 GN=E PE=3 SV=1 Length=82 Score = 74.9 bits (183), Expect = 1e-18, Method: Composition-based stats. Identities = 26/75 (35%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M FV E+ G IVN +L + V L+V LAILTA+RLC C + + + P+ ++Y+ Sbjct 1 MLPFVQEQIGAFIVNFFILSVVCAVTLVVCLAILTAIRLCVQCVSGCHTLVFLPAVHIYN 60 Query 61 RVK----NLNSSRVP 71 + S P Sbjct 61 TGRAAYVKFQESHPP 75 >sp|K9N5R3|VEMP_MERS1 Envelope small membrane protein OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=E PE=1 SV=1 Length=82 Score = 74.6 bits (182), Expect = 2e-18, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 38/75 (51%), Gaps = 4/75 (5%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M FV E G IVN + + + LLV +A LTA RLC C N LV+P+ Y+Y+ Sbjct 1 MLPFVQERIGLFIVNFFIFTVVCAITLLVCMAFLTATRLCVQCMTGFNTLLVQPALYLYN 60 Query 61 RVKN----LNSSRVP 71 ++ S+ P Sbjct 61 TGRSVYVKFQDSKPP 75 >sp|P0DTC4|VEMP_SARS2 Envelope small membrane protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=E PE=1 SV=1 Length=75 Score = 70.7 bits (172), Expect = 7e-17, Method: Composition-based stats. Identities = 75/75 (100%), Positives = 75/75 (100%), Gaps = 0/75 (0%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 Query 61 RVKNLNSSRVPDLLV 75 RVKNLNSSRVPDLLV Sbjct 61 RVKNLNSSRVPDLLV 75 >sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=E PE=1 SV=1 Length=76 Score = 66.5 bits (161), Expect = 3e-15, Method: Composition-based stats. Identities = 72/76 (95%), Positives = 73/76 (96%), Gaps = 1/76 (1%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKP+ YVYS Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60 Query 61 RVKNLNSSR-VPDLLV 75 RVKNLNSS VPDLLV Sbjct 61 RVKNLNSSEGVPDLLV 76 >sp|Q3I5J3|VEMP_BCRP3 Envelope small membrane protein OS=Bat coronavirus Rp3/2004 OX=349344 GN=E PE=3 SV=1 Length=76 Score = 66.5 bits (161), Expect = 3e-15, Method: Composition-based stats. Identities = 72/76 (95%), Positives = 73/76 (96%), Gaps = 1/76 (1%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKP+ YVYS Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60 Query 61 RVKNLNSSR-VPDLLV 75 RVKNLNSS VPDLLV Sbjct 61 RVKNLNSSEGVPDLLV 76 >sp|Q3LZW9|VEMP_BCHK3 Envelope small membrane protein OS=Bat coronavirus HKU3 OX=442736 GN=E PE=3 SV=1 Length=76 Score = 66.5 bits (161), Expect = 3e-15, Method: Composition-based stats. Identities = 72/76 (95%), Positives = 73/76 (96%), Gaps = 1/76 (1%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKP+ YVYS Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60 Query 61 RVKNLNSSR-VPDLLV 75 RVKNLNSS VPDLLV Sbjct 61 RVKNLNSSEGVPDLLV 76 >sp|Q0Q473|VEMP_BC279 Envelope small membrane protein OS=Bat coronavirus 279/2005 OX=389167 GN=E PE=3 SV=1 Length=76 Score = 65.7 bits (159), Expect = 7e-15, Method: Composition-based stats. Identities = 71/76 (93%), Positives = 72/76 (95%), Gaps = 1/76 (1%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MYSFVSEETGTLIVNSVLLF AFVVFLLVTLAILTALRLCAYCCNIVNVSLVKP+ YVYS Sbjct 1 MYSFVSEETGTLIVNSVLLFFAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60 Query 61 RVKNLNSSR-VPDLLV 75 RVKNLNSS VPDLLV Sbjct 61 RVKNLNSSEGVPDLLV 76 >sp|Q0ZME5|VEMP_CVHN5 Envelope small membrane protein OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=E PE=3 SV=1 Length=82 Score = 62.6 bits (151), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (33%), Positives = 34/61 (56%), Gaps = 0/61 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + L L+ V+FL+ +A+L ++LC C N+ ++ PS YVY+R + L Sbjct 8 DTAWYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPSAYVYNRGRQLYK 67 Query 68 S 68 S Sbjct 68 S 68 >sp|Q14EA8|VEMP_CVHN2 Envelope small membrane protein OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=E PE=3 SV=1 Length=82 Score = 62.6 bits (151), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (33%), Positives = 34/61 (56%), Gaps = 0/61 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + L L+ V+FL+ +A+L ++LC C N+ ++ PS YVY+R + L Sbjct 8 DTAWYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPSAYVYNRGRQLYK 67 Query 68 S 68 S Sbjct 68 S 68 >sp|Q5MQC8|VEMP_CVHN1 Envelope small membrane protein OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=E PE=3 SV=1 Length=82 Score = 53.8 bits (128), Expect = 4e-10, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (46%), Gaps = 0/68 (0%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M +T I ++L L ++ L+ +A L ++LC C N ++ PS YVY Sbjct 1 MVDLFFNDTAWYIGQILVLVLFCLISLIFVVAFLATIKLCMQLCGFCNFFIISPSAYVYK 60 Query 61 RVKNLNSS 68 R L S Sbjct 61 RGMQLYKS 68 >sp|P0C2Q9|VEMP_CVPIA Envelope small membrane protein OS=Porcine hemagglutinating encephalomyelitis virus (strain IAF-404) OX=230236 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 29/60 (48%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P0C2Q8|VEMP_CVP67 Envelope small membrane protein OS=Porcine hemagglutinating encephalomyelitis virus (strain 67N) OX=230237 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 29/60 (48%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P0C2Q7|VEMP_CVBQ Envelope small membrane protein OS=Bovine coronavirus (strain Quebec) OX=11133 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 29/60 (48%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P0C2Q6|VEMP_CVBON Envelope small membrane protein OS=Bovine coronavirus (strain Ontario) OX=231422 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 29/60 (48%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P0C2Q5|VEMP_CVBOK Envelope small membrane protein OS=Bovine coronavirus (strain OK-0514) OX=231432 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 29/60 (48%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P0C2Q4|VEMP_CVBLY Envelope small membrane protein OS=Bovine coronavirus (strain LY-138) OX=11131 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 29/60 (48%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P0C2Q3|VEMP_CVBLU Envelope small membrane protein OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 29/60 (48%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P0C2Q2|VEMP_CVBLS Envelope small membrane protein OS=Bovine coronavirus (strain LSU-94LSS-051) OX=233261 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 29/60 (48%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P15775|VEMP_CVBF Envelope small membrane protein OS=Bovine coronavirus (strain F15) OX=11129 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 29/60 (48%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P0C2Q1|VEMP_CVBEN Envelope small membrane protein OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 4e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 29/60 (48%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P15779|VEMP_CVBM Envelope small membrane protein OS=Bovine coronavirus (strain Mebus) OX=11132 GN=E PE=3 SV=1 Length=84 Score = 51.1 bits (121), Expect = 5e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 28/60 (47%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ ++V +A L +LC C + N + PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLGLSPSIYVFNRGRQFYE 69 >sp|Q04854|VEMP_CVHOC Envelope small membrane protein OS=Human coronavirus OC43 OX=31631 GN=E PE=3 SV=1 Length=84 Score = 50.7 bits (120), Expect = 6e-09, Method: Composition-based stats. Identities = 13/60 (22%), Positives = 28/60 (47%), Gaps = 0/60 (0%) Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNS 67 +T + + + ++ +V +A L +LC C + N ++ PS YV++R + Sbjct 10 DTVWYVGQIIFIVAICLLVTIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFYE 69 >sp|P06591|VEMP_CVMJH Envelope small membrane protein OS=Murine coronavirus (strain JHM) OX=11144 GN=E PE=3 SV=1 Length=88 Score = 50.7 bits (120), Expect = 6e-09, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 0/67 (0%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M++ +T + + + ++ ++ +A L +++ C C + N L+ PS Y+Y+ Sbjct 1 MFNLFLTDTVWYVGQIIFIVAVCLMVTIIVVAFLASIKRCIQLCGLCNTLLLSPSIYLYN 60 Query 61 RVKNLNS 67 R K L Sbjct 61 RSKQLYK 67 >sp|Q9IKC8|VEMP_CVRSD Envelope small membrane protein OS=Rat coronavirus (strain 681) OX=33740 GN=E PE=3 SV=1 Length=88 Score = 49.9 bits (118), Expect = 1e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 34/67 (51%), Gaps = 0/67 (0%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M++ +T + + + ++ ++ +A L +++LC C + N L+ PS YVY+ Sbjct 1 MFNLFLIDTVWYVGQIIFIVAVCLMVTIIVVAFLASIKLCIQLCGLCNTLLLSPSIYVYN 60 Query 61 RVKNLNS 67 R K L Sbjct 61 RSKQLYK 67 >sp|P0C2R0|VEMP_CVMA5 Envelope small membrane protein OS=Murine coronavirus (strain A59) OX=11142 GN=E PE=1 SV=1 Length=83 Score = 49.5 bits (117), Expect = 2e-08, Method: Composition-based stats. Identities = 16/67 (24%), Positives = 34/67 (51%), Gaps = 0/67 (0%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M++ +T + + +F ++ ++ +A L +++LC C + N ++ PS Y+Y Sbjct 1 MFNLFLTDTVWYVGQIIFIFAVCLMVTIIVVAFLASIKLCIQLCGLCNTLVLSPSIYLYD 60 Query 61 RVKNLNS 67 R K L Sbjct 61 RSKQLYK 67 >sp|P29076|VEMP_CVMS Envelope small membrane protein OS=Murine coronavirus (strain S) OX=11145 GN=E PE=3 SV=1 Length=88 Score = 49.1 bits (116), Expect = 2e-08, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (48%), Gaps = 0/67 (0%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 M++ +T + + + ++ + +A L +++LC C + N ++ PS Y+Y Sbjct 1 MFNLFLTDTVWYVGQIIFIVAVCLMVTITVVAFLASIKLCIQLCGLCNTLVLSPSIYLYD 60 Query 61 RVKNLNS 67 R K L Sbjct 61 RSKQLYK 67 >sp|A3EXG8|VEMP_BCHK9 Envelope small membrane protein OS=Bat coronavirus HKU9 OX=694006 GN=E PE=3 SV=1 Length=79 Score = 28.7 bits (63), Expect = 2.0, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 0/64 (0%) Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60 MY V LI N ++L + ++ ++V A+L L+ C V + KP+ VY+ Sbjct 1 MYDIVGTNNSILIANVLVLIIICLLVVIVGCALLLILQFVFGVCGFVFKFVCKPTILVYN 60 Query 61 RVKN 64 + +N Sbjct 61 KFRN 64 >sp|P19741|VEMP_CVH22 Envelope small membrane protein OS=Human coronavirus 229E OX=11137 GN=E PE=3 SV=1 Length=77 Score = 28.3 bits (62), Expect = 2.8, Method: Composition-based stats. Identities = 16/60 (27%), Positives = 28/60 (47%), Gaps = 0/60 (0%) Query 11 TLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNSSRV 70 L+VN +L + +V LLV + I+ ++LC C N ++ P VY ++ Sbjct 10 ALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDP 69 >sp|Q10426|RIK1_SCHPO Chromatin modification-related protein rik1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rik1 PE=1 SV=2 Length=1040 Score = 28.7 bits (63), Expect = 4.6, Method: Composition-based stats. Identities = 14/44 (32%), Positives = 23/44 (52%), Gaps = 0/44 (0%) Query 30 TLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNSSRVPDL 73 L +L AL++ Y C+ V+ S ++S VK++ R P L Sbjct 27 CLVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGL 70 >sp|Q52PA5|VEMP_FIPV Envelope small membrane protein OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=E PE=3 SV=1 Length=82 Score = 27.6 bits (60), Expect = 5.4, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 0/58 (0%) Query 12 LIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNSSR 69 ++V+ L ++ +L ++A+L ++LC CCN+ +V P+ + Y K ++ Sbjct 15 MVVSVFFWLLLIIILILFSIALLNVIKLCMVCCNLGKTIIVLPARHAYDAYKTFMQTK 72 Lambda K H a alpha 0.319 0.149 0.436 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0457 0.140 1.90 42.6 43.6 Effective search space used: 5227974420 Database: uniprot_sprot.fasta Posted date: Feb 9, 2024 7:20 PM Number of letters in database: 206,533,160 Number of sequences in database: 570,830 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40